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Conserved domains on  [gi|1034598361|ref|XP_016879722|]
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schlafen family member 13 isoform X1 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PHA02782 super family cl31504
hypothetical protein; Provisional
15-347 1.24e-38

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PHA02782:

Pssm-ID: 165147 [Multi-domain]  Cd Length: 503  Bit Score: 151.36  E-value: 1.24e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361  15 PDLVidvgEVTLGEENRKKLQKTqrdqerarviraACALLNSGGGVIqmEMANRDERPTEMGLDLEESLRKLIQYPYLQa 94
Cdd:PHA02782  194 PNLV----KVKLGENDTENLSTS------------ISALLNSGGGTI--EVTSKEERVDYVLMKRLESIRHLWSVVYDH- 254
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361  95 fFETKQHGRCFYIFVKSWSGDPFLKdgsfnsricSLSSSLYCRSGTSVLHMNSRQAFDFL-KTKERQSKynlinegSPPS 173
Cdd:PHA02782  255 -FNVVNGKERCYIHMHSSNQSPMPS---------TVKTNLYMKTMGSCLQMDSMEALEYLsELKESGGR-------SPRP 317
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361 174 KIMKAVYQNISESNP-----AYEVFQTDTIEYGEILSFPESPSIEFKQFSTKHIQQYVENIIPEYISAFANTEGGYLFIG 248
Cdd:PHA02782  318 ELPEFEYPDGVEDTGsierlAEEFFNRSELQAGESVKFGNSINVKHTSVSAKQLRTRIRQQLPSILSSFANTEGGYLFIG 397
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361 249 VDDKSRKVLGCAkeqVDPDSLK---NVIARAISKLPIVHFCSSKPRVEYSTKIVEVF-CGKELYG-YLCVIKVKAFCCVV 323
Cdd:PHA02782  398 VDNNTHKVIGFT---VGQDYLKlveNDIEKYIKRLRVVHFCEKKEDIKYACRFIKVYkPGEETTStYVCAIKVERCCCAV 474
                         330       340
                  ....*....|....*....|....
gi 1034598361 324 FSEAPKSWMVREKYIRPLTTEEWV 347
Cdd:PHA02782  475 FADWPESWYMDTSGIKKYSPDEWV 498
COG3972 super family cl28313
Superfamily I DNA and RNA helicases [Replication, recombination and repair];
557-896 5.93e-10

Superfamily I DNA and RNA helicases [Replication, recombination and repair];


The actual alignment was detected with superfamily member COG3972:

Pssm-ID: 443172 [Multi-domain]  Cd Length: 565  Bit Score: 62.93  E-value: 5.93e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361 557 VLLGFRSLLSDQLGCEVLNLLTAQQyEIFSRSLRKNRELfVHGLPGSGKT-IMAMKIMekirnvfhcEAH------RILY 629
Cdd:COG3972   140 ALRLLNLVSLEDFFLPLIAVLDLQQ-ERIARSIPDGPQR-IRGVAGSGKTvLLAAKAA---------YLAlkhpgwRILV 208
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361 630 VCEN----QPLRNFISDRNICRAE-------------------------TRETFLREK----------FEHIQH------ 664
Cdd:COG3972   209 TCFNrslaDHLRDLIPRFLRRFSNgepednvklivfhawggkllkqygiPPLTFSQPNeafdeackalLEAIQGeiippi 288
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361 665 ---IVIDEAQNFRTEdgdWYRkakTITQREKDCPGVLWIFLDYFQ----TSHLGHSGLPPLSAQypREELTRVVRN---- 733
Cdd:COG3972   289 ydaILIDEAQDFEPE---FLR---LLYQLLKPPKKRLIWAYDEAQniygRKIPSAGGIPAGIGR--DTILKKNYRNtrpi 360
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361 734 ---ADEIAEYIQQEMQLIIENPP--INIPHGYLAILSEAKWVPGVPGNTKIIKNF-TLEQIVTYVADTC-RCFFERGYSP 806
Cdd:COG3972   361 ltfAHAFGMGLLRPPGLLQGDAEdyEVERPGDKVTLIRPPEPAGRKGPLPEFKKYdDRAEELEAIAEEIkKNLRDEGLRP 440
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361 807 KDVAVLVSTVTEVEQYQSKLLKAMRKKMVvqlsdACDMLGV-----------HIVLDSVRRFSGLERSIVF--GIH--PR 871
Cdd:COG3972   441 SDIAVIYLGNNEAKELGDRLAAALERQGI-----DSYIAGArsdpnffwkdgGVTISTIHRAKGLEAPVVIivGLDqlAK 515
                         410       420
                  ....*....|....*....|....*
gi 1034598361 872 TADPAILPNILICLASRAKQHLYIF 896
Cdd:COG3972   516 GESLERLRNLLYVAMTRARGWLVVS 540
 
Name Accession Description Interval E-value
PHA02782 PHA02782
hypothetical protein; Provisional
15-347 1.24e-38

hypothetical protein; Provisional


Pssm-ID: 165147 [Multi-domain]  Cd Length: 503  Bit Score: 151.36  E-value: 1.24e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361  15 PDLVidvgEVTLGEENRKKLQKTqrdqerarviraACALLNSGGGVIqmEMANRDERPTEMGLDLEESLRKLIQYPYLQa 94
Cdd:PHA02782  194 PNLV----KVKLGENDTENLSTS------------ISALLNSGGGTI--EVTSKEERVDYVLMKRLESIRHLWSVVYDH- 254
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361  95 fFETKQHGRCFYIFVKSWSGDPFLKdgsfnsricSLSSSLYCRSGTSVLHMNSRQAFDFL-KTKERQSKynlinegSPPS 173
Cdd:PHA02782  255 -FNVVNGKERCYIHMHSSNQSPMPS---------TVKTNLYMKTMGSCLQMDSMEALEYLsELKESGGR-------SPRP 317
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361 174 KIMKAVYQNISESNP-----AYEVFQTDTIEYGEILSFPESPSIEFKQFSTKHIQQYVENIIPEYISAFANTEGGYLFIG 248
Cdd:PHA02782  318 ELPEFEYPDGVEDTGsierlAEEFFNRSELQAGESVKFGNSINVKHTSVSAKQLRTRIRQQLPSILSSFANTEGGYLFIG 397
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361 249 VDDKSRKVLGCAkeqVDPDSLK---NVIARAISKLPIVHFCSSKPRVEYSTKIVEVF-CGKELYG-YLCVIKVKAFCCVV 323
Cdd:PHA02782  398 VDNNTHKVIGFT---VGQDYLKlveNDIEKYIKRLRVVHFCEKKEDIKYACRFIKVYkPGEETTStYVCAIKVERCCCAV 474
                         330       340
                  ....*....|....*....|....
gi 1034598361 324 FSEAPKSWMVREKYIRPLTTEEWV 347
Cdd:PHA02782  475 FADWPESWYMDTSGIKKYSPDEWV 498
AlbA_2 pfam04326
Putative DNA-binding domain; This family belongs to the AlbA clan of DNA-binding domains.
208-334 1.23e-19

Putative DNA-binding domain; This family belongs to the AlbA clan of DNA-binding domains.


Pssm-ID: 461263  Cd Length: 116  Bit Score: 85.04  E-value: 1.23e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361 208 ESPSIEFKQFSTKhiqqYVENIIPEYISAFANTEGGYLFIGVDDKsRKVLGCAKEQVDP-DSLKNVIARAIsklpivhfc 286
Cdd:pfam04326   1 ESETLEFKESLGK----SSKKKIAKTISAFANTEGGTIVIGVDDT-GKIVGVSDDEKDTeDLLKNQILDLI--------- 66
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1034598361 287 ssKPRVEYSTKIVEVfcgKElyGYLCVIKVKAFCCVVFSEAPKSWMVR 334
Cdd:pfam04326  67 --KPPIEVDIEEIEI---DG--KYVLVVEIPEGKLKPYYTNKGEVYIR 107
COG2865 COG2865
Predicted transcriptional regulator, contains HTH domain [Transcription];
202-318 7.15e-15

Predicted transcriptional regulator, contains HTH domain [Transcription];


Pssm-ID: 442112  Cd Length: 123  Bit Score: 71.84  E-value: 7.15e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361 202 EILSFPESPSIEFKQFSTKhiqqyvENIIPEYISAFANTEGGYLFIGVDDKsRKVLGCAkeqvDPDSLKNVIARAISklp 281
Cdd:COG2865     5 ELLAGGESETLEFKESLNE------PDEILKTVCAFANTEGGTLLIGVDDD-GEIVGLD----DPDKLLERLENLIA--- 70
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1034598361 282 ivHFCSSKPRVEYSTKIVEvfcGKElygyLCVIKVKA 318
Cdd:COG2865    71 --DNISPPIRPDVEEVEID---GKR----VLVIEVPP 98
COG3972 COG3972
Superfamily I DNA and RNA helicases [Replication, recombination and repair];
557-896 5.93e-10

Superfamily I DNA and RNA helicases [Replication, recombination and repair];


Pssm-ID: 443172 [Multi-domain]  Cd Length: 565  Bit Score: 62.93  E-value: 5.93e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361 557 VLLGFRSLLSDQLGCEVLNLLTAQQyEIFSRSLRKNRELfVHGLPGSGKT-IMAMKIMekirnvfhcEAH------RILY 629
Cdd:COG3972   140 ALRLLNLVSLEDFFLPLIAVLDLQQ-ERIARSIPDGPQR-IRGVAGSGKTvLLAAKAA---------YLAlkhpgwRILV 208
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361 630 VCEN----QPLRNFISDRNICRAE-------------------------TRETFLREK----------FEHIQH------ 664
Cdd:COG3972   209 TCFNrslaDHLRDLIPRFLRRFSNgepednvklivfhawggkllkqygiPPLTFSQPNeafdeackalLEAIQGeiippi 288
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361 665 ---IVIDEAQNFRTEdgdWYRkakTITQREKDCPGVLWIFLDYFQ----TSHLGHSGLPPLSAQypREELTRVVRN---- 733
Cdd:COG3972   289 ydaILIDEAQDFEPE---FLR---LLYQLLKPPKKRLIWAYDEAQniygRKIPSAGGIPAGIGR--DTILKKNYRNtrpi 360
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361 734 ---ADEIAEYIQQEMQLIIENPP--INIPHGYLAILSEAKWVPGVPGNTKIIKNF-TLEQIVTYVADTC-RCFFERGYSP 806
Cdd:COG3972   361 ltfAHAFGMGLLRPPGLLQGDAEdyEVERPGDKVTLIRPPEPAGRKGPLPEFKKYdDRAEELEAIAEEIkKNLRDEGLRP 440
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361 807 KDVAVLVSTVTEVEQYQSKLLKAMRKKMVvqlsdACDMLGV-----------HIVLDSVRRFSGLERSIVF--GIH--PR 871
Cdd:COG3972   441 SDIAVIYLGNNEAKELGDRLAAALERQGI-----DSYIAGArsdpnffwkdgGVTISTIHRAKGLEAPVVIivGLDqlAK 515
                         410       420
                  ....*....|....*....|....*
gi 1034598361 872 TADPAILPNILICLASRAKQHLYIF 896
Cdd:COG3972   516 GESLERLRNLLYVAMTRARGWLVVS 540
AAA_22 pfam13401
AAA domain;
595-676 1.63e-03

AAA domain;


Pssm-ID: 379165 [Multi-domain]  Cd Length: 129  Bit Score: 39.63  E-value: 1.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361 595 LFVHGLPGSGKTIMAMKIMEKIRNVfhcEAHRILYVCENQP-LRNFIsdRNICRA-------ETRETFLREKFEHI---- 662
Cdd:pfam13401   8 LVLTGESGTGKTTLLRRLLEQLPEV---RDSVVFVDLPSGTsPKDLL--RALLRAlglplsgRLSKEELLAALQQLllal 82
                          90
                  ....*....|....*..
gi 1034598361 663 ---QHIVIDEAQNFRTE 676
Cdd:pfam13401  83 avaVVLIIDEAQHLSLE 99
 
Name Accession Description Interval E-value
PHA02782 PHA02782
hypothetical protein; Provisional
15-347 1.24e-38

hypothetical protein; Provisional


Pssm-ID: 165147 [Multi-domain]  Cd Length: 503  Bit Score: 151.36  E-value: 1.24e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361  15 PDLVidvgEVTLGEENRKKLQKTqrdqerarviraACALLNSGGGVIqmEMANRDERPTEMGLDLEESLRKLIQYPYLQa 94
Cdd:PHA02782  194 PNLV----KVKLGENDTENLSTS------------ISALLNSGGGTI--EVTSKEERVDYVLMKRLESIRHLWSVVYDH- 254
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361  95 fFETKQHGRCFYIFVKSWSGDPFLKdgsfnsricSLSSSLYCRSGTSVLHMNSRQAFDFL-KTKERQSKynlinegSPPS 173
Cdd:PHA02782  255 -FNVVNGKERCYIHMHSSNQSPMPS---------TVKTNLYMKTMGSCLQMDSMEALEYLsELKESGGR-------SPRP 317
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361 174 KIMKAVYQNISESNP-----AYEVFQTDTIEYGEILSFPESPSIEFKQFSTKHIQQYVENIIPEYISAFANTEGGYLFIG 248
Cdd:PHA02782  318 ELPEFEYPDGVEDTGsierlAEEFFNRSELQAGESVKFGNSINVKHTSVSAKQLRTRIRQQLPSILSSFANTEGGYLFIG 397
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361 249 VDDKSRKVLGCAkeqVDPDSLK---NVIARAISKLPIVHFCSSKPRVEYSTKIVEVF-CGKELYG-YLCVIKVKAFCCVV 323
Cdd:PHA02782  398 VDNNTHKVIGFT---VGQDYLKlveNDIEKYIKRLRVVHFCEKKEDIKYACRFIKVYkPGEETTStYVCAIKVERCCCAV 474
                         330       340
                  ....*....|....*....|....
gi 1034598361 324 FSEAPKSWMVREKYIRPLTTEEWV 347
Cdd:PHA02782  475 FADWPESWYMDTSGIKKYSPDEWV 498
AlbA_2 pfam04326
Putative DNA-binding domain; This family belongs to the AlbA clan of DNA-binding domains.
208-334 1.23e-19

Putative DNA-binding domain; This family belongs to the AlbA clan of DNA-binding domains.


Pssm-ID: 461263  Cd Length: 116  Bit Score: 85.04  E-value: 1.23e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361 208 ESPSIEFKQFSTKhiqqYVENIIPEYISAFANTEGGYLFIGVDDKsRKVLGCAKEQVDP-DSLKNVIARAIsklpivhfc 286
Cdd:pfam04326   1 ESETLEFKESLGK----SSKKKIAKTISAFANTEGGTIVIGVDDT-GKIVGVSDDEKDTeDLLKNQILDLI--------- 66
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1034598361 287 ssKPRVEYSTKIVEVfcgKElyGYLCVIKVKAFCCVVFSEAPKSWMVR 334
Cdd:pfam04326  67 --KPPIEVDIEEIEI---DG--KYVLVVEIPEGKLKPYYTNKGEVYIR 107
COG2865 COG2865
Predicted transcriptional regulator, contains HTH domain [Transcription];
202-318 7.15e-15

Predicted transcriptional regulator, contains HTH domain [Transcription];


Pssm-ID: 442112  Cd Length: 123  Bit Score: 71.84  E-value: 7.15e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361 202 EILSFPESPSIEFKQFSTKhiqqyvENIIPEYISAFANTEGGYLFIGVDDKsRKVLGCAkeqvDPDSLKNVIARAISklp 281
Cdd:COG2865     5 ELLAGGESETLEFKESLNE------PDEILKTVCAFANTEGGTLLIGVDDD-GEIVGLD----DPDKLLERLENLIA--- 70
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1034598361 282 ivHFCSSKPRVEYSTKIVEvfcGKElygyLCVIKVKA 318
Cdd:COG2865    71 --DNISPPIRPDVEEVEID---GKR----VLVIEVPP 98
COG3972 COG3972
Superfamily I DNA and RNA helicases [Replication, recombination and repair];
557-896 5.93e-10

Superfamily I DNA and RNA helicases [Replication, recombination and repair];


Pssm-ID: 443172 [Multi-domain]  Cd Length: 565  Bit Score: 62.93  E-value: 5.93e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361 557 VLLGFRSLLSDQLGCEVLNLLTAQQyEIFSRSLRKNRELfVHGLPGSGKT-IMAMKIMekirnvfhcEAH------RILY 629
Cdd:COG3972   140 ALRLLNLVSLEDFFLPLIAVLDLQQ-ERIARSIPDGPQR-IRGVAGSGKTvLLAAKAA---------YLAlkhpgwRILV 208
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361 630 VCEN----QPLRNFISDRNICRAE-------------------------TRETFLREK----------FEHIQH------ 664
Cdd:COG3972   209 TCFNrslaDHLRDLIPRFLRRFSNgepednvklivfhawggkllkqygiPPLTFSQPNeafdeackalLEAIQGeiippi 288
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361 665 ---IVIDEAQNFRTEdgdWYRkakTITQREKDCPGVLWIFLDYFQ----TSHLGHSGLPPLSAQypREELTRVVRN---- 733
Cdd:COG3972   289 ydaILIDEAQDFEPE---FLR---LLYQLLKPPKKRLIWAYDEAQniygRKIPSAGGIPAGIGR--DTILKKNYRNtrpi 360
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361 734 ---ADEIAEYIQQEMQLIIENPP--INIPHGYLAILSEAKWVPGVPGNTKIIKNF-TLEQIVTYVADTC-RCFFERGYSP 806
Cdd:COG3972   361 ltfAHAFGMGLLRPPGLLQGDAEdyEVERPGDKVTLIRPPEPAGRKGPLPEFKKYdDRAEELEAIAEEIkKNLRDEGLRP 440
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361 807 KDVAVLVSTVTEVEQYQSKLLKAMRKKMVvqlsdACDMLGV-----------HIVLDSVRRFSGLERSIVF--GIH--PR 871
Cdd:COG3972   441 SDIAVIYLGNNEAKELGDRLAAALERQGI-----DSYIAGArsdpnffwkdgGVTISTIHRAKGLEAPVVIivGLDqlAK 515
                         410       420
                  ....*....|....*....|....*
gi 1034598361 872 TADPAILPNILICLASRAKQHLYIF 896
Cdd:COG3972   516 GESLERLRNLLYVAMTRARGWLVVS 540
Zot COG4128
Zona occludens toxin, predicted ATPase [General function prediction only];
596-673 3.52e-04

Zona occludens toxin, predicted ATPase [General function prediction only];


Pssm-ID: 443304 [Multi-domain]  Cd Length: 276  Bit Score: 43.55  E-value: 3.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361 596 FVHGLPGSGKTIMAMKIM-----EKIRNVF-HCEAHRILYVCENQPLRNFISDRNICRAETRETFLREK----FEHIQH- 664
Cdd:COG4128     5 LITGVPGSGKSYEAVWFLiipalKKGRRVItNIPGLKILERIAEHLGLAVPDTAELINVDTDDPDGLEKmarwFHWAPDg 84
                          90
                  ....*....|.
gi 1034598361 665 --IVIDEAQNF 673
Cdd:COG4128    85 alIVIDEAQRV 95
AAA_22 pfam13401
AAA domain;
595-676 1.63e-03

AAA domain;


Pssm-ID: 379165 [Multi-domain]  Cd Length: 129  Bit Score: 39.63  E-value: 1.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034598361 595 LFVHGLPGSGKTIMAMKIMEKIRNVfhcEAHRILYVCENQP-LRNFIsdRNICRA-------ETRETFLREKFEHI---- 662
Cdd:pfam13401   8 LVLTGESGTGKTTLLRRLLEQLPEV---RDSVVFVDLPSGTsPKDLL--RALLRAlglplsgRLSKEELLAALQQLllal 82
                          90
                  ....*....|....*..
gi 1034598361 663 ---QHIVIDEAQNFRTE 676
Cdd:pfam13401  83 avaVVLIIDEAQHLSLE 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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