|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
232-523 |
1.58e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.52 E-value: 1.58e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 232 ERKDQEKATLAAQIENLTRDLENREKQQLQMLDQLTEIQNHFETCEANRKRTDLQLSELSQHAEEATKQAEHYLSEFQRS 311
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 312 ETLREEAEKRREDLKAKAQEsirqwklkhkkLERSMEKQAETLVQLTEKNNQFIKERDELKSQLCAALQQIENLRKELND 391
Cdd:COG1196 301 EQDIARLEERRRELEERLEE-----------LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 392 VLSKRALQEEELHCKEKKLNDIESHQAELELEVKNSLDTIHRLENELKRQSKSQSQIKAEKIHLEEEITELKKSQSQDKV 471
Cdd:COG1196 370 AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE 449
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1039742045 472 KLLEMQESIKDLSAIRADLANKLAEEEKAKKAVFRDLSELTAQVKSKEEETA 523
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
295-638 |
2.03e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 81.26 E-value: 2.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 295 EEATKQAEHYLSEFQRSETLREEAEKRREDLKAKAQESIRQWKLKHKklersmEKQAETLVQLTEKNnQFIKERDELKSQ 374
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAE------LRELELALLVLRLE-ELREELEELQEE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 375 LCAALQQIENLRKELNDVLSKRALQEEELHCKEKKLNDIEShqaelelEVKNSLDTIHRLENELKRQSKSQSQIKAEKIH 454
Cdd:TIGR02168 248 LKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQK-------ELYALANEISRLEQQKQILRERLANLERQLEE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 455 LEEEITELKKSQSQDKVKLLEMQESIKDLSAIRADLANKLAEEEKAKKAVFRDLSELTAQVkskeEETATAITQLKLERD 534
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL----ETLRSKVAQLELQIA 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 535 VHQRELEDLSSSLESVKLKHEQNIQELMKHFKK----EKSEAESHIRMLKAESLEDKNMAKAHLGQLEKLKSQCEKLTEE 610
Cdd:TIGR02168 397 SLNNEIERLEARLERLEDRRERLQQEIEELLKKleeaELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQA 476
|
330 340
....*....|....*....|....*...
gi 1039742045 611 LTHTENENKKLKLKYQSLKEELDKKEKY 638
Cdd:TIGR02168 477 LDAAERELAQLQARLDSLERLQENLEGF 504
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
33-680 |
3.52e-14 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 77.49 E-value: 3.52e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 33 SRSDAETKRVleELTGKLNEVQKPDVVSDRVERRLQEIEREMRLERELVERRHDQlglVSLKLQEALKKQEAKADENEDV 112
Cdd:PTZ00121 1169 ARKAEDAKKA--EAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAE---DAKKAEAVKKAEEAKKDAEEAK 1243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 113 IKRKLRQSETEKSQLEQELEISRR---LLSQSESNRETLLHQVEELRT--QLIKAEGDQRGLQHQVPCISKQPLSHQDDQ 187
Cdd:PTZ00121 1244 KAEEERNNEEIRKFEEARMAHFARrqaAIKAEEARKADELKKAEEKKKadEAKKAEEKKKADEAKKKAEEAKKADEAKKK 1323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 188 GDDRRfRRGVEREKLSLEKQMADLRVQLNFNSMASELEEVKRCMERKDQEKATLAAQIENLTRDLENREKQQlqmldqlt 267
Cdd:PTZ00121 1324 AEEAK-KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD-------- 1394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 268 EIQNHFEtcEANRKRTDLQLSELSQH-AEEATKQAEhylsEFQRSETLREEAEKRR--EDLKAKAQESIRQWKLKHKKLE 344
Cdd:PTZ00121 1395 EAKKKAE--EDKKKADELKKAAAAKKkADEAKKKAE----EKKKADEAKKKAEEAKkaDEAKKKAEEAKKAEEAKKKAEE 1468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 345 RSMEKQAETLVQLTEKNNQFIKERDELKSQLCAALQQIENLRKELNDVLSKRALQEEELHCKEKKLNDIESHQAElelEV 424
Cdd:PTZ00121 1469 AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAE---EK 1545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 425 KnsldtihrlenelkrqsKSQSQIKAEKIHLEEEI--TELKKSQSQDKVKLLEMQESIKDLSAIRADLANKLAEEEKAKK 502
Cdd:PTZ00121 1546 K-----------------KADELKKAEELKKAEEKkkAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK 1608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 503 AVFRDLSE---LTAQVKSKEEETATAITQLKLERDVHQRELEDLSSSLESVKLKHEQNIQELMKHFKK-EKSEAESHIRM 578
Cdd:PTZ00121 1609 AEEAKKAEeakIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKaEEAKKAEEDEK 1688
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 579 LKAESLEDKNMAKAHLGQLEKLKSQCEKLTEELTHTENENKKLKLKYQSLKEELDKKEKYISTEEEHLRRMEESRLHLKD 658
Cdd:PTZ00121 1689 KAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEK 1768
|
650 660
....*....|....*....|..
gi 1039742045 659 QLLCLETEQESILGVIGKEIDE 680
Cdd:PTZ00121 1769 KAEEIRKEKEAVIEEELDEEDE 1790
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
11-651 |
5.40e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.63 E-value: 5.40e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 11 LRDLSSEQVRLGDDLNRELFRRSRSDAETKRVLEELTGKLNEVQKPDVVSDRVERRLQEIEREMRLERELVERRHDQLgl 90
Cdd:TIGR02168 290 LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL-- 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 91 vslklqEALKKQEAKADENEDVIKRKLRQSETEKSQLEQELEISRRLLSQSESNRETLLHQVEELRTQLIKAEGDQrglq 170
Cdd:TIGR02168 368 ------EELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE---- 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 171 HQVPCISKQPLSHQDDQGDDRRFRRGVEREKLSLEKQMADLRVQLNFNSMASELEEVKRCMERKDQEKATLAAQIENltr 250
Cdd:TIGR02168 438 LQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN--- 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 251 dlENREKQQLQMLDQLTEIQNHFETC--EANRKRTDLQLSELSQHAEEAT---KQAEHYLSEFQRSETLREEAEKRREDL 325
Cdd:TIGR02168 515 --QSGLSGILGVLSELISVDEGYEAAieAALGGRLQAVVVENLNAAKKAIaflKQNELGRVTFLPLDSIKGTEIQGNDRE 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 326 KAKAQESIRQWKLKHKKLERSMEK----------------QAETLVQLTEKNNQFI------------------------ 365
Cdd:TIGR02168 593 ILKNIEGFLGVAKDLVKFDPKLRKalsyllggvlvvddldNALELAKKLRPGYRIVtldgdlvrpggvitggsaktnssi 672
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 366 ----KERDELKSQLCAALQQIENLRKELNDVLSKRALQEEELHCKEKKLNDIESHQAELELEVKNSLDTIHRLENELKRQ 441
Cdd:TIGR02168 673 lerrREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 442 SKSQSQIKAEKIHLEEEITELKKSQSQDKVKLLEMQESIKDLSairaDLANKLAEEEKAKKAVFRDLSELTAQVKSKEEE 521
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK----EELKALREALDELRAELTLLNEEAANLRERLES 828
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 522 TATAITQLKLERDVHQRELEDLSSSLESVKLKHEQ------NIQELMKHFKKEKSEAESHIRMLKAESLEDKNMAKAHLG 595
Cdd:TIGR02168 829 LERRIAATERRLEDLEEQIEELSEDIESLAAEIEEleelieELESELEALLNERASLEEALALLRSELEELSEELRELES 908
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 1039742045 596 QLEKLKSQCEKLTEELTHTENENKKLKLKYQSLKEELdkKEKYISTEEEHLRRMEE 651
Cdd:TIGR02168 909 KRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL--SEEYSLTLEEAEALENK 962
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
30-680 |
6.17e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.51 E-value: 6.17e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 30 FRRSRSDAETKrvLEELTGKLNEVQkpDVVSDrVERRLQEIERE-------MRLERELVERRHDQLGLVSLKLQEALKKQ 102
Cdd:COG1196 170 YKERKEEAERK--LEATEENLERLE--DILGE-LERQLEPLERQaekaeryRELKEELKELEAELLLLKLRELEAELEEL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 103 EAKADENEdvikRKLRQSETEKSQLEQELEISRRLLSQSESNRETLLHQVEELRTQLIKAEGDQRglqhqvpciskqplS 182
Cdd:COG1196 245 EAELEELE----AELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA--------------R 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 183 HQDDQGDDRRFRRGVEREKLSLEKQMADLRVQLNfnSMASELEEVKRCMERKDQEKATLAAQIENLTRDLENREKQQLQM 262
Cdd:COG1196 307 LEERRRELEERLEELEEELAELEEELEELEEELE--ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEEL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 263 LDQLTEIQNHFETCEANRKRTDLQLSELSQHAEEATKQAEHYLSEFQRSETLREEAEKRREDLKAKAQESIRQwklkHKK 342
Cdd:COG1196 385 AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE----EEA 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 343 LERSMEKQAETLVQLTEKNNQFIKERDELKSQLCAALQQIENLRKELNDVLSKRALQEEELHCKEKKLNDIESHQAELEL 422
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAAL 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 423 EVKNSLDTIHRLENELKRQSKSQSQIKAEKIHLEEEITELKKSQSQDKVKLLEMQESIKDLSAIRADLanklaEEEKAKK 502
Cdd:COG1196 541 EAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDL-----READARY 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 503 AVFRDLSELTAQVKSKEEETATAITQLKLERDVHQRELEDLSSSLESVKLKHEQNIQELmkhfKKEKSEAESHIRMLKAE 582
Cdd:COG1196 616 YVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAAL----LEAEAELEELAERLAEE 691
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 583 SLEDKNMAKAHLGQLEKLKSQCEKLTEELTHTENENKKLKLKYQSLKEELDKKEKYISTEEEHLRRMEESRlhlkdqllc 662
Cdd:COG1196 692 ELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDL--------- 762
|
650
....*....|....*...
gi 1039742045 663 leTEQESILGVIGKEIDE 680
Cdd:COG1196 763 --EELERELERLEREIEA 778
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
44-792 |
5.06e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 73.64 E-value: 5.06e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 44 EELTGKLNEVQKPDVVSDRVERRLQEIEREMRLERELVERRHDQlglVSLKLQEALKKQEAKADENEDVIKRKLRQSETE 123
Cdd:PTZ00121 1094 EEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAE---DARKAEEARKAEDAKRVEIARKAEDARKAEEAR 1170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 124 KSQLEQELEISRRLLsqsESNRETLLHQVEELRtqliKAEGDQRGLQHQvpciSKQPLSHQDDQGDDRRFRRGVEREKLS 203
Cdd:PTZ00121 1171 KAEDAKKAEAARKAE---EVRKAEELRKAEDAR----KAEAARKAEEER----KAEEARKAEDAKKAEAVKKAEEAKKDA 1239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 204 LEKQMADlRVQLNFNSMASELEEVKRCMERKDQEKATLAAQIENLTRDLENREKQQLQMLDQLTEIQNHFETCEANRKRT 283
Cdd:PTZ00121 1240 EEAKKAE-EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAD 1318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 284 DL--QLSELSQHAEEATKQAEHylsEFQRSETLREEAEKRREDLKA--KAQESIRQWKLKHKKLERSMEKQAETLV---Q 356
Cdd:PTZ00121 1319 EAkkKAEEAKKKADAAKKKAEE---AKKAAEAAKAEAEAAADEAEAaeEKAEAAEKKKEEAKKKADAAKKKAEEKKkadE 1395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 357 LTEKNNQFIKERDELKSQlCAALQQIENLRKELNDvlsKRALQEEELHCKEKKLNDIESHQAELELEVKNSLDTIHRLEN 436
Cdd:PTZ00121 1396 AKKKAEEDKKKADELKKA-AAAKKKADEAKKKAEE---KKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 437 ELKRQSKSQSQIKAEKihLEEEITELKKSQSQDKVKLLEMQESIKDLSAIRADLANKLAEEEKAKKAvfRDLSELTAQVK 516
Cdd:PTZ00121 1472 ADEAKKKAEEAKKADE--AKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKA--DEAKKAEEKKK 1547
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 517 SKEEETATAITQLKLERDVHQ--RELEDLSSSL---ESVKLKHEQNIQELMKHFKKEKSEAESHIRM-----LKAESLED 586
Cdd:PTZ00121 1548 ADELKKAEELKKAEEKKKAEEakKAEEDKNMALrkaEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKaeeakIKAEELKK 1627
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 587 KNMAKAHLGQLEKLKSQCEKLTEELTHTENENKklklkyqSLKEELDKKEKYISTEEEHLRRMEESRLHLKDQLLCLETE 666
Cdd:PTZ00121 1628 AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENK-------IKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE 1700
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 667 QESILGVIGKEIDEACKTfsrdslEKLKVltsgpqlhydphrwlAESKTKLQwlCEELKERESRERSMRQQLAACRQELR 746
Cdd:PTZ00121 1701 AKKAEELKKKEAEEKKKA------EELKK---------------AEEENKIK--AEEAKKEAEEDKKKAEEAKKDEEEKK 1757
|
730 740 750 760
....*....|....*....|....*....|....*....|....*.
gi 1039742045 747 ELTEHKESELLCLFEHIERQEQLLEEfhqekrGLLEETQRKDEEVE 792
Cdd:PTZ00121 1758 KIAHLKKEEEKKAEEIRKEKEAVIEE------ELDEEDEKRRMEVD 1797
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
255-587 |
1.35e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 72.02 E-value: 1.35e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 255 REKQQLQML-DQLTEIQNHFETCEANRKRTDLQLSELSQHAEEATKQAEHYLSEFQR----SETLREEAEKRREDLKAKA 329
Cdd:TIGR02169 671 SEPAELQRLrERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQleqeEEKLKERLEELEEDLSSLE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 330 QEsIRQWKLKHKKLERSMEKQAETLVQLTEKNN--------QFIKERDELKSQLCAALQQIE----NLRKELNDVLSKRA 397
Cdd:TIGR02169 751 QE-IENVKSELKELEARIEELEEDLHKLEEALNdlearlshSRIPEIQAELSKLEEEVSRIEarlrEIEQKLNRLTLEKE 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 398 LQEEELHCKEKKLNDIESHQAELELEVKNSLDTIHRLENELKRQSKSQSQIKAEKIHLEEEITELKKsqsqdkvKLLEMQ 477
Cdd:TIGR02169 830 YLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA-------QLRELE 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 478 ESIKDLSAIRADLANKLAEEEKAKKAVFRDLSELTAQVKSKEEETAT--AITQLKLERDVHQRELEDlsssLESVKLKHE 555
Cdd:TIGR02169 903 RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEelSLEDVQAELQRVEEEIRA----LEPVNMLAI 978
|
330 340 350
....*....|....*....|....*....|....*..
gi 1039742045 556 QNIQELMKHF-----KKEKSEAESHIRMLKAESLEDK 587
Cdd:TIGR02169 979 QEYEEVLKRLdelkeKRAKLEEERKAILERIEEYEKK 1015
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
64-795 |
1.16e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 1.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 64 ERRLQEIEREM-RLERELVERRHDqlgLVSLKLQ--EALKKQEAKADENE---DVIKRKLRQSETEKSQLEQELEISRRL 137
Cdd:TIGR02168 178 ERKLERTRENLdRLEDILNELERQ---LKSLERQaeKAERYKELKAELRElelALLVLRLEELREELEELQEELKEAEEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 138 LSQSESNRETLLHQVEELRTQLIKAEGDQRGLQHQVPCIS--KQPLSHQDDQGDDRrfRRGVEREKLSLEKQMADL---- 211
Cdd:TIGR02168 255 LEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAneISRLEQQKQILRER--LANLERQLEELEAQLEELeskl 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 212 -RVQLNFNSMASELEEVKRCMERKDQEKATLAAQIENLTRDLENREKQ-------QLQMLDQLTEIQNHFETCEA----- 278
Cdd:TIGR02168 333 dELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQletlrskVAQLELQIASLNNEIERLEArlerl 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 279 --NRKRTDLQLSELSQHAEEATKQA--------EHYLSEFQRSETLREEAEKRREDLKAKAQESIRQWKLKH-------- 340
Cdd:TIGR02168 413 edRRERLQQEIEELLKKLEEAELKElqaeleelEEELEELQEELERLEEALEELREELEEAEQALDAAERELaqlqarld 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 341 --KKLERSMEKQAETLVQLTEKNNQFIKERDELKSQLC--------------------------AALQQIENLRKELN-- 390
Cdd:TIGR02168 493 slERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISvdegyeaaieaalggrlqavvvenlnAAKKAIAFLKQNELgr 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 391 ------DVLSKRALQEEELHCKEKK------LNDIESHQAELELEVKNSLDTIHRLEN-----ELKRQSKSQSQI---KA 450
Cdd:TIGR02168 573 vtflplDSIKGTEIQGNDREILKNIegflgvAKDLVKFDPKLRKALSYLLGGVLVVDDldnalELAKKLRPGYRIvtlDG 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 451 EKIHLEEEITelkKSQSQDKVKLLEMQESIKDLSAIRADLANKLAEEEKAKKAV---FRDLSELTAQVKSKEEETATAIT 527
Cdd:TIGR02168 653 DLVRPGGVIT---GGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELrkeLEELEEELEQLRKELEELSRQIS 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 528 QLKLERDVHQRELEDLSSSLESVKLKHEQNIQELMKhFKKEKSEAESHIRMLKAESLEDKNMAKAHLGQLEKLKSQCEKL 607
Cdd:TIGR02168 730 ALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEE-LEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDEL 808
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 608 TEELTHTENENKKLKLKYQSLKEELDKKEKYISTEEEHLRRMEESRLHLKDQLLCLETEQESILgvigKEIDEAckTFSR 687
Cdd:TIGR02168 809 RAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE----SELEAL--LNER 882
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 688 DSLEklkvltsgpqlhydphRWLAESKTKLQWLCEELKERESRERSMRQQLAACRQELRELTEHK---ESELLCLFEHI- 763
Cdd:TIGR02168 883 ASLE----------------EALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLeglEVRIDNLQERLs 946
|
810 820 830
....*....|....*....|....*....|..
gi 1039742045 764 ERQEQLLEEFHQEKRGLLEETQRKDEEVETLQ 795
Cdd:TIGR02168 947 EEYSLTLEEAEALENKIEDDEEEARRRLKRLE 978
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
223-551 |
2.73e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.79 E-value: 2.73e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 223 ELEEVKRCMERKDQEKATLAAQIENLTRDLENREK-QQLQMLDQ---LTEIQNHFETCEANRKRTDLQLSELSQHAEEAT 298
Cdd:TIGR02169 178 ELEEVEENIERLDLIIDEKRQQLERLRREREKAERyQALLKEKReyeGYELLKEKEALERQKEAIERQLASLEEELEKLT 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 299 KQAEHYLSEFQRSETLREEAEKRREDL----KAKAQESIRQWKLKHKKLERSMEKQAETLVQLTEKNNQFIKERDELKSq 374
Cdd:TIGR02169 258 EEISELEKRLEEIEQLLEELNKKIKDLgeeeQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLA- 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 375 lcaalqQIENLRKELNDVLSKRALQEEELHCKEKKLNDIESHQAELELEVKNSLDtihrlenELKRQSKSQSQIKAEKIH 454
Cdd:TIGR02169 337 ------EIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRD-------ELKDYREKLEKLKREINE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 455 LEEEITELKKSQSQDKVKLLEMQESIKDLSAIRADLANKLAEEEKAKKAVFRDLSELTAQVKSKEEEtataITQLKLERD 534
Cdd:TIGR02169 404 LKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQE----LYDLKEEYD 479
|
330
....*....|....*..
gi 1039742045 535 VHQRELEDLSSSLESVK 551
Cdd:TIGR02169 480 RVEKELSKLQRELAEAE 496
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
277-600 |
7.71e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.23 E-value: 7.71e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 277 EANRKRTDLQLSELSQHAEEATKQAEHYLSEFQRSETLREEAEKRREDLKAK---AQESIRQWKLKHKKLERSMEKQAET 353
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQisaLRKDLARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 354 LVQLTEKNNQFIKERDELKSQLCAALQQIENLRKELNDVLSKRALQEEELHCKEKKLNDIESHQAELELEVKNSLDTIHR 433
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 434 LENELKRqsksqsqIKAEKIHLEEEITELKKSQSQDKVKLLEMQESIKDLSAIRAdlanklaEEEKAKKAVFRDLSELTA 513
Cdd:TIGR02168 836 TERRLED-------LEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERA-------SLEEALALLRSELEELSE 901
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 514 QVKSKEEEtataITQLKLERDVHQRELEDLSSSLESVKLKHEQNIQELMKHFKKEKSEAESHIRMLKAESLEDKNMAKAH 593
Cdd:TIGR02168 902 ELRELESK----RSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRL 977
|
....*..
gi 1039742045 594 LGQLEKL 600
Cdd:TIGR02168 978 ENKIKEL 984
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
224-795 |
2.35e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 64.70 E-value: 2.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 224 LEEVKRCMERKDQEKATLAAQIENLTRDLENREKQQLQMLDQLTEIQNHFETCEANRKRTDLQLSELSQHAEEATKQAEH 303
Cdd:PRK03918 167 LGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 304 YLSEFQRSETLRE---EAEKRREDLKAKaqesIRQWKLKHKKLErSMEKQAETLVQLTEKNNQFIKERDELKSQLCAALQ 380
Cdd:PRK03918 247 LESLEGSKRKLEEkirELEERIEELKKE----IEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 381 QIENLRKELNDVLSKralqEEELHCKEKKLNDIESHQAELELEVKnSLDTIHRLENELKRQSKSQSQIKAEKIhlEEEIT 460
Cdd:PRK03918 322 EINGIEERIKELEEK----EERLEELKKKLKELEKRLEELEERHE-LYEEAKAKKEELERLKKRLTGLTPEKL--EKELE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 461 ELKKSQSQDKVKLLEMQESIKDLSAIRADLANKLAEEEKAKKAVFRDLSELTaqvkskEEETATAITQLKLERDVHQREL 540
Cdd:PRK03918 395 ELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELT------EEHRKELLEEYTAELKRIEKEL 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 541 EDLSSSLESVKlkheQNIQELMKHFKKEKSEAESHIRMLKAESLEDKnMAKAHLGQLEKLKSQCEKLTEELThtenenkK 620
Cdd:PRK03918 469 KEIEEKERKLR----KELRELEKVLKKESELIKLKELAEQLKELEEK-LKKYNLEELEKKAEEYEKLKEKLI-------K 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 621 LKLKYQSLKEELDKKEKYIS---TEEEHLRRMEESRLHLKDQLLCLETEQESILGVIGKEIDEACKTFSRdsleklkvLT 697
Cdd:PRK03918 537 LKGEIKSLKKELEKLEELKKklaELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLE--------LK 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 698 SGPQLHYDPHRWLAESKTKLQWLCEELKERESRERSMRQQLAACRQ--------ELRELTEHKESELLCLFEHIERQEQL 769
Cdd:PRK03918 609 DAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKkyseeeyeELREEYLELSRELAGLRAELEELEKR 688
|
570 580
....*....|....*....|....*....
gi 1039742045 770 LEEFHQEKRGL---LEETQRKDEEVETLQ 795
Cdd:PRK03918 689 REEIKKTLEKLkeeLEEREKAKKELEKLE 717
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
3-549 |
2.57e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 2.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 3 QLHTFHQSLRDLSSEQVRLGDDLNRELFRRSRSDAE---TKRVLEELTGKLNEVQKPDVvsdRVERRLQEIEREMRLERE 79
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAEleeLRLELEELELELEEAQAEEY---ELLAELARLEQDIARLEE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 80 LVERRHDQLglvslklqEALKKQEAKADENEDVIKRKLRQSETEKSQLEQELEISRRLLSQSESNRETLLHQVEELRTQL 159
Cdd:COG1196 310 RRRELEERL--------EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 160 IKAEGDQRGLQHQVpciskqpLSHQDDQGDDRRFRRGVEREKLSLEKQMADLRVQLnfNSMASELEEVKRCMERKDQEKA 239
Cdd:COG1196 382 EELAEELLEALRAA-------AELAAQLEELEEAEEALLERLERLEEELEELEEAL--AELEEEEEEEEEALEEAAEEEA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 240 TLAAQIENLTRDLENREKQQLQMLDQLTEIQNHFETcEANRKRTDLQLSELSQHAEEATKQAEHYLSEFQRSETLREEAE 319
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAE-AAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIG 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 320 KRREDLKAKAQESIRQWKLKHKKLERSMEKQAE----------TLVQLTEKNNQFIKERDELKSQLCAALQQIENLRKEL 389
Cdd:COG1196 532 VEAAYEAALEAALAAALQNIVVEDDEVAAAAIEylkaakagraTFLPLDKIRARAALAAALARGAIGAAVDLVASDLREA 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 390 N-------DVLSKRALQEEELHCKEKKLNDIESHQAELELEVKNSLDTIHRLENELKRQSKSQSQIKAEKIHLEEEITEL 462
Cdd:COG1196 612 DaryyvlgDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 463 KKSQSQDKVKLLEMQESIKDLSAIRADLANKLAEEEKAKKAVFRDLSELTAQVKSKEEETATAITQLKLERDVHQRELED 542
Cdd:COG1196 692 ELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
....*..
gi 1039742045 543 LSSSLES 549
Cdd:COG1196 772 LEREIEA 778
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
31-644 |
4.88e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.01 E-value: 4.88e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 31 RRSRSDAETKRVLEELTgKLNEVQKPDVVsdrveRRLQEIEREMRLERELVERRHdqlglvslklQEALKKQEAKADENE 110
Cdd:PTZ00121 1268 RQAAIKAEEARKADELK-KAEEKKKADEA-----KKAEEKKKADEAKKKAEEAKK----------ADEAKKKAEEAKKKA 1331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 111 DVIKRKLRQSETEKSQLEQELEISRRLLSQSESNRETLLHQVEELRTqliKAEGDQRGLQHQVPCISKQPLSHQDDQGDD 190
Cdd:PTZ00121 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK---KADAAKKKAEEKKKADEAKKKAEEDKKKAD 1408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 191 RRFRRGVEREKLSLEKQMADLRVQLNfnSMASELEEVKRCMERKdqEKATLAAQIENLTRDLENREKQqlqmlDQLTEIQ 270
Cdd:PTZ00121 1409 ELKKAAAAKKKADEAKKKAEEKKKAD--EAKKKAEEAKKADEAK--KKAEEAKKAEEAKKKAEEAKKA-----DEAKKKA 1479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 271 NHFETCEANRKRTDlqlsELSQHAEEATKQAEhylsEFQRSETLREEAEKRREDLKAKAQESIRQWKLKHKKLERSME-- 348
Cdd:PTZ00121 1480 EEAKKADEAKKKAE----EAKKKADEAKKAAE----AKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADel 1551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 349 KQAETLVQLTEKNNQFIKERDELKSQLcaALQQIENLRKelndVLSKRALQEEELHCKEKKLNDIESHQAElelEVKNSL 428
Cdd:PTZ00121 1552 KKAEELKKAEEKKKAEEAKKAEEDKNM--ALRKAEEAKK----AEEARIEEVMKLYEEEKKMKAEEAKKAE---EAKIKA 1622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 429 DTIHRLENELKRQSKSQSQIKAEKIHLEEeiteLKKSQSQDKVKllEMQESIKDLSAIRADLANKLAEEEKAKKAvfrdl 508
Cdd:PTZ00121 1623 EELKKAEEEKKKVEQLKKKEAEEKKKAEE----LKKAEEENKIK--AAEEAKKAEEDKKKAEEAKKAEEDEKKAA----- 1691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 509 seltaQVKSKEEETATAITQLKLERDVHQRELEDLSSSLESVKLKHEQniqelmkhFKKEKSEAESHIRMLKAESLEDKN 588
Cdd:PTZ00121 1692 -----EALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEE--------AKKEAEEDKKKAEEAKKDEEEKKK 1758
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 1039742045 589 MAkahlgqleKLKSQCEKLTEELThtenenkklKLKYQSLKEELDKKEKYISTEEE 644
Cdd:PTZ00121 1759 IA--------HLKKEEEKKAEEIR---------KEKEAVIEEELDEEDEKRRMEVD 1797
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
26-680 |
7.48e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.16 E-value: 7.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 26 NRELFRRSRSDAETKRVLE------ELTGKLNEVQKPDVVSDRVERRLQEIEREMRLERELVERRHDQLGLVSLKLQEAL 99
Cdd:TIGR02169 199 QLERLRREREKAERYQALLkekreyEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELN 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 100 KKQEAKADENEDVIKRKLRQSETEKSQLE-------QELEISRRLLSQSESNRETLLHQVEELRTQLIKAEGDQRGLQHQ 172
Cdd:TIGR02169 279 KKIKDLGEEEQLRVKEKIGELEAEIASLErsiaekeRELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEE 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 173 VPCISKQ-PLSHQDDQGDDRRFRRGVEREKlSLEKQMADLRvqlnfnsmaSELEEVKRCMERKDQEKATLAAQIENLTRD 251
Cdd:TIGR02169 359 YAELKEElEDLRAELEEVDKEFAETRDELK-DYREKLEKLK---------REINELKRELDRLQEELQRLSEELADLNAA 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 252 LENREKQQLQMLDQLTEIQNHFETCEANRKRTDLQLSELSQHAEEATKQAEHYLSEFQRSETLREEAEKRREDLKAKAQE 331
Cdd:TIGR02169 429 IAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRG 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 332 SIRQWKLKHKKLER---------SMEKQAETLVQLTEKNN-QFIKERDELKSQLCAAL---------------------- 379
Cdd:TIGR02169 509 GRAVEEVLKASIQGvhgtvaqlgSVGERYATAIEVAAGNRlNNVVVEDDAVAKEAIELlkrrkagratflplnkmrderr 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 380 ---------------------QQIENL--------------------------------------------RKELNDVLS 394
Cdd:TIGR02169 589 dlsilsedgvigfavdlvefdPKYEPAfkyvfgdtlvvedieaarrlmgkyrmvtlegelfeksgamtggsRAPRGGILF 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 395 KRALQEEELHCKEKK------LNDIESHQAELELEVKNSLDTIHRLENELKRQSKSQSQIKAEKIHLEEEITELKKSQSQ 468
Cdd:TIGR02169 669 SRSEPAELQRLRERLeglkreLSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSS 748
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 469 DKVKLLEMQESIKDLSAIRADLANKLAEEEKAKKAVFRDLSEltaqvkSKEEETATAITQLKLERDVHQRELEDLSSSLE 548
Cdd:TIGR02169 749 LEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH------SRIPEIQAELSKLEEEVSRIEARLREIEQKLN 822
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 549 SVKLKHEQnIQELMKHFKKEKSEAESHIRMLKAESLEDKNMAKAHLGQLEKLKSQCEKLTEELTHTENENKKLKLKYQSL 628
Cdd:TIGR02169 823 RLTLEKEY-LEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLREL 901
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|..
gi 1039742045 629 KEELDKKEKYISTEEEHLRRMEESRLHLKDQLLCLETEQESILGVIGKEIDE 680
Cdd:TIGR02169 902 ERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSL 953
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
67-549 |
9.15e-10 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 62.89 E-value: 9.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 67 LQEIEREMRLERELVERRHDQLGLVSLKLQEALKKQEAKADENEDViKRKLR----QSETEKSQLEQELEISRRLLSQSE 142
Cdd:pfam01576 73 LEEILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAA-RQKLQlekvTTEAKIKKLEEDILLLEDQNSKLS 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 143 SNRETLLHQVEELRTQLIKAEGDQRGLQHQVPCISKQPLSHQDDQGDDRRFRRGVEREKLSLEKQMADLRVQLNfnSMAS 222
Cdd:pfam01576 152 KERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIA--ELQA 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 223 ELEEVKRCMERKDQEKATLAAQIENLTRDLENREKQQLQMLDQLTEIQNHFETCEANRKRTDLQLSELSQHAEEATKQAE 302
Cdd:pfam01576 230 QIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELE 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 303 HYLSEFQRSETLREEAEKRREDLKAKAQESIRQWKLKHKKLErsmEKQAETLVQLTEKNNQFIKERDELKSQLCAALQQI 382
Cdd:pfam01576 310 DTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMR---QKHTQALEELTEQLEQAKRNKANLEKAKQALESEN 386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 383 ENLRKELNDVLSKRALQEEELHCKEKKLNDIESHQAELELEVKNSLDTIHRLENELKRQSKSQSQIKAEKIHLEEEITEL 462
Cdd:pfam01576 387 AELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSL 466
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 463 kKSQSQDKVKLLE--------MQESIKDLSAIRADLANKLAEEEKAKKAVFRDLSELTAQV---KSKEEETATAITQLKL 531
Cdd:pfam01576 467 -ESQLQDTQELLQeetrqklnLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLsdmKKKLEEDAGTLEALEE 545
|
490
....*....|....*...
gi 1039742045 532 ERDVHQRELEDLSSSLES 549
Cdd:pfam01576 546 GKKRLQRELEALTQQLEE 563
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
125-794 |
2.96e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.24 E-value: 2.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 125 SQLEQELEISRRLLSQSESNRETLLHQVEELRTQLIKAEGDQ------RGLQHQVPCISKQPLSHQDDqgDDRRFRRGVE 198
Cdd:TIGR02169 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRERekaeryQALLKEKREYEGYELLKEKE--ALERQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 199 REKLSLEKQMADLRVQLN-----FNSMASELEEV-KRCMERKDQEKATLAAQIENLTRDLENREKQQLQMLDQLTEIQNH 272
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISelekrLEEIEQLLEELnKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEER 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 273 FETCEANRKRTDLQLSELSQHAEEATKQAEHYLSEFQRSETLREEAEKRREDLKAKAQEsirqWKLKHKKLERSMEKqae 352
Cdd:TIGR02169 324 LAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAE----TRDELKDYREKLEK--- 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 353 tlvqLTEKNNQFIKERDELKSQLCAALQQIENLRKELNDVLSKRALQEEELHCKEKKLNDIESHQAELELEVKNSLDTIH 432
Cdd:TIGR02169 397 ----LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELY 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 433 RLENELKRQSKSQSQIKAEKIHLEEEITELKKSQSQDKVKLLEMQESIKDLSAIRADLANklAEEEKAKKAVFRDLSELT 512
Cdd:TIGR02169 473 DLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGS--VGERYATAIEVAAGNRLN 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 513 AQVKSKEEETATAITQLKLER---------DVHQRELEDLSSSLESVKLKHEQNIQELMKHFKK---------------- 567
Cdd:TIGR02169 551 NVVVEDDAVAKEAIELLKRRKagratflplNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPafkyvfgdtlvvedie 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 568 -------------------EKSEA------ESHIRMLKAESLEDKNMAKAHlgQLEKLKSQCEKLTEELTHTENENKKLK 622
Cdd:TIGR02169 631 aarrlmgkyrmvtlegelfEKSGAmtggsrAPRGGILFSRSEPAELQRLRE--RLEGLKRELSSLQSELRRIENRLDELS 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 623 LKYQSLKEELDKKEKYISTEEEHLRRMEESRLHLKDQLLCLE---TEQESILGVIGKEIDEacktfSRDSLEKLKVLTSG 699
Cdd:TIGR02169 709 QELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEqeiENVKSELKELEARIEE-----LEEDLHKLEEALND 783
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 700 PQLHYDPHRWlAESKTKLQWLCEELKERESRERSMRQQLAA---CRQELRELTEHKESELLCLFEHIERQEQLLEEFHQE 776
Cdd:TIGR02169 784 LEARLSHSRI-PEIQAELSKLEEEVSRIEARLREIEQKLNRltlEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGK 862
|
730
....*....|....*...
gi 1039742045 777 KRGLLEETQRKDEEVETL 794
Cdd:TIGR02169 863 KEELEEELEELEAALRDL 880
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
224-828 |
5.96e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.54 E-value: 5.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 224 LEEVKRCMERKDQEKATLAAQIENLTRDLEN----REKQQLQMLDQLTEIQNHFETCEANRKRTDLQLSELSQHAEEATK 299
Cdd:PTZ00121 1026 IEKIEELTEYGNNDDVLKEKDIIDEDIDGNHegkaEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKK 1105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 300 QAEHYLSEFQRSETLREEAEKRREDLKAKAQESIRQWKLKHKKLErsmEKQAETLVQLTEKNNQFIKERDELKSQLCAAL 379
Cdd:PTZ00121 1106 TETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAED---AKRVEIARKAEDARKAEEARKAEDAKKAEAAR 1182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 380 QQIENLR-KELNDVLSKRALQEEELHCKEKKLNDIESHQAELELEVKNSLDTIHRLENELKRQSKSQSQikaEKIHLEEE 458
Cdd:PTZ00121 1183 KAEEVRKaEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNN---EEIRKFEE 1259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 459 ITELKKSQSQDKVKLLEMQESIKDLSAIRADLANKLAEEEKAKKAvfrDLSELTAQVKSKEEETATAITQLKLERDVHQR 538
Cdd:PTZ00121 1260 ARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKA---DEAKKKAEEAKKADEAKKKAEEAKKKADAAKK 1336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 539 ELEDLSSSLESVKLKHEQNIQELMKHFKKEKS-EAESHIRMLKAESLEDKNMAKAHLGQLEKLKSQCEKLTEELTHTENE 617
Cdd:PTZ00121 1337 KAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAaEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAA 1416
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 618 NKK---LKLKYQSLK--EELDKKEKYISTEEEHLRRMEESRlhlKDQLLCLETEQESILGVIGKEIDEACKTfsrdslEK 692
Cdd:PTZ00121 1417 KKKadeAKKKAEEKKkaDEAKKKAEEAKKADEAKKKAEEAK---KAEEAKKKAEEAKKADEAKKKAEEAKKA------DE 1487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 693 LKVLTSGPQLHYDPHRWLAESKTKlqwlCEELKERESRERSmrqqlaacrQELRELTEHKESELLCLFEHIERQEQL--L 770
Cdd:PTZ00121 1488 AKKKAEEAKKKADEAKKAAEAKKK----ADEAKKAEEAKKA---------DEAKKAEEAKKADEAKKAEEKKKADELkkA 1554
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 1039742045 771 EEFHQEKRGLLEETQRKDEEVETLQPNLLFKLPPWEEASQTTVNAQSAAQMEDKADRV 828
Cdd:PTZ00121 1555 EELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
63-659 |
6.41e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 60.13 E-value: 6.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 63 VERRLQEIEREMRLERELVERRHDQlglvslKLQEALKKQEAKADENEDVIKRKLRQSETEKSQLEQELEISRRLLSQSE 142
Cdd:pfam15921 243 VEDQLEALKSESQNKIELLLQQHQD------RIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYM 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 143 SNRETLLHQVEELRTQLIKAegdQRGLQHQVPCISKQPLSHQDDQGDDRRFRRGVEREKLSLEKQMADLRVQLNF--NSM 220
Cdd:pfam15921 317 RQLSDLESTVSQLRSELREA---KRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKreKEL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 221 ASELEEVKRCMERKDQEKATlaaqIENLTRDLENREKQ---------------QLQMLDQLTEIQNHFETCEanrkrtdl 285
Cdd:pfam15921 394 SLEKEQNKRLWDRDTGNSIT----IDHLRRELDDRNMEvqrleallkamksecQGQMERQMAAIQGKNESLE-------- 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 286 QLSELSQHAEEATKQAEHYLSEFQRSETLREEAEKRREDLKAKAQESIRQWKLKHKKLERSMEKQAETLVQLTEKNNQ-- 363
Cdd:pfam15921 462 KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgd 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 364 ----FIKERDELKSQLCAALQQIENLRKELNDVLskralqeEELHCKEKKLNDIESHQAELELEVKNSLDTIHRLENELK 439
Cdd:pfam15921 542 hlrnVQTECEALKLQMAEKDKVIEILRQQIENMT-------QLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKD 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 440 RQSKSQSQIKAEKIHLEEEITELKKSQSqdkvkllEMQESIKDLSAIRADLANKLAEEEKAKKAVFRDLSELTAQVKSKE 519
Cdd:pfam15921 615 KKDAKIRELEARVSDLELEKVKLVNAGS-------ERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKS 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 520 EETATAITQLKLERDVHQRELEDLSSSLESVK------LKHEQNIQELMKHFKKEKSEAESHIRMLKaESLEDKNMAKAH 593
Cdd:pfam15921 688 EEMETTTNKLKMQLKSAQSELEQTRNTLKSMEgsdghaMKVAMGMQKQITAKRGQIDALQSKIQFLE-EAMTNANKEKHF 766
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039742045 594 LG--------QLEKLKSQCEKLTEELTHTENENKKLKLKYQSLKEELDKKEKYISTEEEHLRRMEESRLHLKDQ 659
Cdd:pfam15921 767 LKeeknklsqELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQ 840
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
222-534 |
7.88e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 7.88e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 222 SELEEVKRCMER-------KDQEKATLAAQIENLTRDLENREKQQLQMLDQLTEIQNHFETCEANRKRTDLQLSELSQHA 294
Cdd:TIGR02168 677 REIEELEEKIEEleekiaeLEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 295 EEATKQAEHYLSEFQRSETLREEAEKRREDLKAKAQESIRQWKL----------KHKKLERSMEKQAETLVQLTEKNNQF 364
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAlrealdelraELTLLNEEAANLRERLESLERRIAAT 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 365 IKERDELKSQLCAALQQIENLRKELNDVLSKRALQEEELHCKEKKLNDIESHQAELELEVKNSLDTIHRLENELKRqsks 444
Cdd:TIGR02168 837 ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSE---- 912
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 445 qsqikaekihLEEEITELKKSQSQDKVKLLEMQESIkdlsairADLANKLAEEEkakKAVFRDLSELTAQVKSKEEETAT 524
Cdd:TIGR02168 913 ----------LRRELEELREKLAQLELRLEGLEVRI-------DNLQERLSEEY---SLTLEEAEALENKIEDDEEEARR 972
|
330
....*....|
gi 1039742045 525 AITQLKLERD 534
Cdd:TIGR02168 973 RLKRLENKIK 982
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
242-468 |
2.43e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.08 E-value: 2.43e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 242 AAQIENLTRDLENREKQQLQMLDQLTEIQNHFETCEANRKRTDLQLSELSQHAEEATKQAEHYLSEFQRSETLREEAEKR 321
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 322 REDLKAKAQESIRqwklkhkKLERSMEKQAETLVQLTEKNNQFIKERDELKSQLCAALQQIENLRKELNDVLSKRALQEE 401
Cdd:COG4942 99 LEAQKEELAELLR-------ALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039742045 402 ELHCKEKKLNDIESHQAELELEVKNSLDTIHRLENELKRQSKSQSQIKAEKIHLEEEITELKKSQSQ 468
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
105-658 |
5.61e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.00 E-value: 5.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 105 KADENEDVIKRKLRQSETEKSQLEQELEISRRLLSQSESNRETLLHQVEELRTQLIKAEGDQRGLQHQVPCISKQplshq 184
Cdd:PRK03918 162 NAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEEL----- 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 185 ddqgddRRFRRGVEREKLSLEKQMADLRVQL-NFNSMASELEEVKRCMERKDQEkatlAAQIENLTRDLENREKQQLQML 263
Cdd:PRK03918 237 ------KEEIEELEKELESLEGSKRKLEEKIrELEERIEELKKEIEELEEKVKE----LKELKEKAEEYIKLSEFYEEYL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 264 DQLTEIQNHFETCEANRKRTDLQLSELSQHAEEAtKQAEHYLSEFQRSETLREEAEKRREDLKAKAQESIRqwkLKHKKL 343
Cdd:PRK03918 307 DELREIEKRLSRLEEEINGIEERIKELEEKEERL-EELKKKLKELEKRLEELEERHELYEEAKAKKEELER---LKKRLT 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 344 ERSMEKQAETLVQLTEKNNQFIKERDELKSQLCAALQQIENLRKELNDV--------LSKRALQEEE----LHCKEKKLN 411
Cdd:PRK03918 383 GLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELkkakgkcpVCGRELTEEHrkelLEEYTAELK 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 412 DIESHQAELELEVKNSLDTIHRLENELKRQSK--SQSQIKAEKIHLEEEITELKKSQSQDKVKLLEmqESIKDLSAIRAD 489
Cdd:PRK03918 463 RIEKELKEIEEKERKLRKELRELEKVLKKESEliKLKELAEQLKELEEKLKKYNLEELEKKAEEYE--KLKEKLIKLKGE 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 490 LANkLAEEEKAKKAVFRDLSELTAQVKSKEEETATAITQLKLERDVHQRELEDLSSSLES-----VKLKH-EQNIQELMK 563
Cdd:PRK03918 541 IKS-LKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPfyneyLELKDaEKELEREEK 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 564 HFKKEKSEAESHIRMLkAESLEDKNMAKAHLGQLEKLKSQ--CEKLTEELTHTENENKKLKLKYQSLKEELDKKEKYIST 641
Cdd:PRK03918 620 ELKKLEEELDKAFEEL-AETEKRLEELRKELEELEKKYSEeeYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEK 698
|
570
....*....|....*..
gi 1039742045 642 EEEHLRRMEESRLHLKD 658
Cdd:PRK03918 699 LKEELEEREKAKKELEK 715
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
375-583 |
1.26e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.16 E-value: 1.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 375 LCAALQQIENLRKELNDVLSKRALQEEELHCKEKKLNDIESHQAELELEVKNSLDTIHRLENELKRQSKSQSQIKAEKIH 454
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 455 LEEEITELK-----------KSQSQDKVKLLEMQESIKD----------LSAIRADLANKLAEEEKAKKAVFRDLSELTA 513
Cdd:COG4942 95 LRAELEAQKeelaellralyRLGRQPPLALLLSPEDFLDavrrlqylkyLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 514 QVKSKEEETATAITQLKLERDVHQRELEDLSSSLEsvklKHEQNIQELMKHFKKEKSEAESHIRMLKAES 583
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELA----ELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
60-439 |
2.71e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 2.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 60 SDRVERRLQEIEREMRLERELVERRHDQLGLVSLKLQEALKKQEAKADENEDViKRKLRQSETEKSQLEQELEISRRLLS 139
Cdd:TIGR02168 665 SAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQL-RKELEELSRQISALRKDLARLEAEVE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 140 QSESNRETLLHQVEELRTQLIKAEGDQRGLQHQVPCISKQPLSHQDDQGDDRRFRRGVEREKLSLEKQMADLRVqlNFNS 219
Cdd:TIGR02168 744 QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE--EAAN 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 220 MASELEEVKRCMERKDQEKATLAAQIENLTRDLENREKQQLQMLDQLTEIQNHFETCEANRKRTDLQLSELSQHAEEATK 299
Cdd:TIGR02168 822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSE 901
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 300 QAEHYLSEFQRSETLREEAEKRREDLKAKaQESIRQwKLKHkKLERSMEKQAETLVQLTEKNNQFIKERDELKSQlcaaL 379
Cdd:TIGR02168 902 ELRELESKRSELRRELEELREKLAQLELR-LEGLEV-RIDN-LQERLSEEYSLTLEEAEALENKIEDDEEEARRR----L 974
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 380 QQIENLRKELNDVlskRALQEEELHCKEKKLNDIESHQAELELEVKNSLDTIHRLENELK 439
Cdd:TIGR02168 975 KRLENKIKELGPV---NLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREAR 1031
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
205-639 |
3.19e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 54.26 E-value: 3.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 205 EKQMADLRVQLNFNSMASELEEVKRCMERKDQEKATLAAQIENLTRDLE---------NREKQQLQMLD---QLTEIQNH 272
Cdd:TIGR04523 243 EKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNqlkseisdlNNQKEQDWNKElksELKNQEKK 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 273 FETCEANRKRTDLQLSELSQHAEEATKQAEHYLSEFQRSETLREEAEKRREDLKAKAQ---ESIRQWKLKHKKLERSMEK 349
Cdd:TIGR04523 323 LEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQsykQEIKNLESQINDLESKIQN 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 350 QAETLVQLTEKNNQFIKERDELKSQLCAALQQIENLRKELNDVLSKRALQEEELHCKEKKLNDIESHQAELELEVKNSLD 429
Cdd:TIGR04523 403 QEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQ 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 430 TIHRLENELKRQSKSQSQIKAEKIHLEEEITELKKSQSQDKVKllemqesIKDLSAIRADLANKLAEEEKakkavfrdls 509
Cdd:TIGR04523 483 NLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEK-------IEKLESEKKEKESKISDLED---------- 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 510 eltaqvKSKEEETATAITQLKLERDVHQRELEDLSSSLESVKLKHEQnIQELMKHFKKEKSEAEShirmlkaesledknm 589
Cdd:TIGR04523 546 ------ELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEE-KQELIDQKEKEKKDLIK--------------- 603
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 1039742045 590 akahlgQLEKLKSQCEKLTEELTHTENENKKLKLKYQSLKEELDKKEKYI 639
Cdd:TIGR04523 604 ------EIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEV 647
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
69-660 |
3.61e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 54.28 E-value: 3.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 69 EIEREMRLERELVERRHDQLGLVSLKLQEALKKQEAKADENEDVIKRKLRQSETEKSQLEQELEISRRLLSQSEsNRETL 148
Cdd:TIGR00606 391 QIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQ-QLEGS 469
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 149 LHQVEELRTQLIKAEGDQRGLQHQ--VPCISKQPLSHQDDQGDdrrfrrgVEREKLSLEKQMADLRVQlnfnsmaselEE 226
Cdd:TIGR00606 470 SDRILELDQELRKAERELSKAEKNslTETLKKEVKSLQNEKAD-------LDRKLRKLDQEMEQLNHH----------TT 532
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 227 VKRCMERKDQEKATLAAQIENLTRDLENREKQQLQMLDQLTEIQNHFETCEANRKRTDLQLSELSQHAEEATKQAEHYLS 306
Cdd:TIGR00606 533 TRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINN 612
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 307 EFQRSETLREEAEKRREDLKAKAQESIRQWKLKhKKLERSmEKQAETLVQLTEKNNQFIKERDELKSQLCAALQQIENLR 386
Cdd:TIGR00606 613 ELESKEEQLSSYEDKLFDVCGSQDEESDLERLK-EEIEKS-SKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTE 690
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 387 KELNDVLSKralQEEELHCKEKKLNDIESHQAELELEVKNSLDTIHRLENELKRQSKSQSQIKAEKIHLEEEITELKKSQ 466
Cdd:TIGR00606 691 AELQEFISD---LQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDI 767
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 467 SQDKVKLLEMQESIKDLSAIRADLAnKLAEEEKAKKAVFRDLSELTAqvKSKEEETATAITQLKLERDVHQRELEDLSSS 546
Cdd:TIGR00606 768 EEQETLLGTIMPEEESAKVCLTDVT-IMERFQMELKDVERKIAQQAA--KLQGSDLDRTVQQVNQEKQEKQHELDTVVSK 844
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 547 LESVKlKHEQNIQELMKHFKKEKSEAESHirmlKAESLEDKNMAKAHLGQLEKLKSQCEKLTEELTHTENENKKLKlkyQ 626
Cdd:TIGR00606 845 IELNR-KLIQDQQEQIQHLKSKTNELKSE----KLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLE---T 916
|
570 580 590
....*....|....*....|....*....|....
gi 1039742045 627 SLKEELDKKEKYISTEEEHLRRMEESRLHLKDQL 660
Cdd:TIGR00606 917 FLEKDQQEKEELISSKETSNKKAQDKVNDIKEKV 950
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
97-795 |
9.49e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 9.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 97 EALKKQEAKADENEDVIKRKLRQSETEKSQLEQELEISRRLlsqSESNRETLLHQVEELRTQLIKAEGDQRGLQHQVpci 176
Cdd:TIGR02169 180 EEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEK---REYEGYELLKEKEALERQKEAIERQLASLEEEL--- 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 177 skqplshqddqgddrrfrRGVEREKLSLEKQMADLRVQLNfnsmaselEEVKRCMERKDQEKATLAAQIENLTRDLENRE 256
Cdd:TIGR02169 254 ------------------EKLTEEISELEKRLEEIEQLLE--------ELNKKIKDLGEEEQLRVKEKIGELEAEIASLE 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 257 KQQLQMLDQLTEIQNHFETCEANRKRTDLQLSELSQHAEEATKQAEHYLSEFQRSETLREEAEKRREDLKAKAQEsirqW 336
Cdd:TIGR02169 308 RSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAE----T 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 337 KLKHKKLERSMEKqaetlvqLTEKNNQFIKERDELKSQLCAALQQIENLRKELNDVLSKRALQEEELHCKEKKLNDIESH 416
Cdd:TIGR02169 384 RDELKDYREKLEK-------LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWK 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 417 QAELELEVKNSLDTIHRLENELKRQSKSQSQIKAEKIHLEEEITELKKSQSQDKVKLLEMQESIKDLSAIRADL------ 490
Cdd:TIGR02169 457 LEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLgsvger 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 491 --------------------------ANKLAEEEKAKKAVF----------RDLSEL----------------------- 511
Cdd:TIGR02169 537 yataievaagnrlnnvvveddavakeAIELLKRRKAGRATFlplnkmrderRDLSILsedgvigfavdlvefdpkyepaf 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 512 ------TAQVKSKEE------------------ETATAITQLKLERDVHQRELEDLSSSLESVKLKhEQNIQELMKHFKK 567
Cdd:TIGR02169 617 kyvfgdTLVVEDIEAarrlmgkyrmvtlegelfEKSGAMTGGSRAPRGGILFSRSEPAELQRLRER-LEGLKRELSSLQS 695
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 568 EKSEAESHIRMLKAESLEDKNMAKAHLGQLEKLKSQCEKLTEELTHTENENKKLKLKYQSLKEELDKKEKYISTEEEHLR 647
Cdd:TIGR02169 696 ELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLH 775
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 648 RMEESRLHLKDQLLcleteqESILGVIGKEIDEACKTFSR-----DSLE-KLKVLTSGPQLHYDP----HRWLAESKTKL 717
Cdd:TIGR02169 776 KLEEALNDLEARLS------HSRIPEIQAELSKLEEEVSRiearlREIEqKLNRLTLEKEYLEKEiqelQEQRIDLKEQI 849
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039742045 718 QWLCEELKERESRERSMRQQLAACRQELRELtehkESELLCLFEHIERQEQLLEEFHQEKRGLLEETQRKDEEVETLQ 795
Cdd:TIGR02169 850 KSIEKEIENLNGKKEELEEELEELEAALRDL----ESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELK 923
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
23-331 |
1.35e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 1.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 23 DDLNRELFRRSRSDAETKRVLEELTGKLNEVQKPDVVSDRVERRLQEIEREMRLERELVERRHDQLGLVSLKLQEALKKQ 102
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 103 EAKADENEDvikrKLRQSETEKSQLEQELEISRRLLSQSESNRETLLHQVEELRTQLIKAEGDQRGLQHQVPCISKQPLS 182
Cdd:TIGR02168 760 EAEIEELEE----RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 183 HQDDQGDDRRFRRGVEREKLSLEKQMADLRVQLnfNSMASELEEVKRCMERKDQEKATLAAQIENLTRDLENREKQQLQM 262
Cdd:TIGR02168 836 TERRLEDLEEQIEELSEDIESLAAEIEELEELI--EELESELEALLNERASLEEALALLRSELEELSEELRELESKRSEL 913
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 263 LDQLTEIQNHFETCEANRKRTDLQLSEL-SQHAEEATKQAEHYLSEFQRSETLREEAEKRREDLKAKAQE 331
Cdd:TIGR02168 914 RRELEELREKLAQLELRLEGLEVRIDNLqERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
311-525 |
1.79e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 51.37 E-value: 1.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 311 SETLREEAEKRREDLKAKAQESIRQWKLKHKKLERSMEKQAETLVQLTEKNnqfiKERDELKSQLCAALQQIENLRKELN 390
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQ----AEIDKLQAEIAEAEAEIEERREELG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 391 DVLskRALQEeelhckekklNDIESHQAELELEVKNSLDTIHRLE----------NELKRQSKSQSQIKAEKIHLEEEIT 460
Cdd:COG3883 90 ERA--RALYR----------SGGSVSYLDVLLGSESFSDFLDRLSalskiadadaDLLEELKADKAELEAKKAELEAKLA 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039742045 461 ELKKSQSQDKVKLLEMQESIKDLSAIRADLANKLAEEEKAKKAVFRDLSELTAQVKSKEEETATA 525
Cdd:COG3883 158 ELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAA 222
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
286-854 |
2.60e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.58 E-value: 2.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 286 QLSELSQHAEEATKQAEHYlsefqrsETLREEAEKRREDLKAKAQEsirqwklkHKKLERSMEKQAETLVQLTEKNNQFI 365
Cdd:PRK02224 207 RLNGLESELAELDEEIERY-------EEQREQARETRDEADEVLEE--------HEERREELETLEAEIEDLRETIAETE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 366 KERDELKSQLCAALQQIENLRKELNDVLSKRALQEEELHCKEKKLNDIESHQAELELEVKNSLDTIHRLENELKRQSKSQ 445
Cdd:PRK02224 272 REREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDA 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 446 SQIKAEKIHLEEEITELKKSQSQDKVKLLEMQESIKDLsairadlanklaEEEkakkavFRDLSELTAQVKSKEEETATA 525
Cdd:PRK02224 352 DDLEERAEELREEAAELESELEEAREAVEDRREEIEEL------------EEE------IEELRERFGDAPVDLGNAEDF 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 526 ITQLKLERDVHQRELEDLSSSLESVKLKHEQNiQELMKHFK----KEKSEAESHirmlkAESLEDKNMAKAHL-GQLEKL 600
Cdd:PRK02224 414 LEELREERDELREREAELEATLRTARERVEEA-EALLEAGKcpecGQPVEGSPH-----VETIEEDRERVEELeAELEDL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 601 KSQCEKLTEELTHTEnENKKLKLKYQSLKEELDKKEKYISTEEEHLRRMEESRLHLKDQLLCLETEQESILGVIGKEIDE 680
Cdd:PRK02224 488 EEEVEEVEERLERAE-DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEE 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 681 AcktfsRDSLEKLKVLtsgpqlhydpHRWLAESKTKLQWLcEELKERESRERSMRQQLAACRQELRELTEHKESELLCLF 760
Cdd:PRK02224 567 A-----EEAREEVAEL----------NSKLAELKERIESL-ERIRTLLAAIADAEDEIERLREKREALAELNDERRERLA 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 761 EHIERQEQLLEEFHQEKrglLEETQRKDEEVETLQPNLLFKLPPWEEASQTTVNAQSAAqmEDKADRVNALqmstRVALD 840
Cdd:PRK02224 631 EKRERKRELEAEFDEAR---IEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAV--ENELEELEEL----RERRE 701
|
570
....*....|....
gi 1039742045 841 HLESVPEKLSLLED 854
Cdd:PRK02224 702 ALENRVEALEALYD 715
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
232-694 |
4.30e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.79 E-value: 4.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 232 ERKDQEKATLAAQIENLTRDLENREKQQLQMLDQLTEIQNHFETCEANRKRTDLQLSELSQHAEEATKQAEHYLSEFQRS 311
Cdd:TIGR04523 148 KKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQN 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 312 ETLREEAEKRREDLKAKAQEsirqWKLKHKKLERSMEKQAETLVQLTEKNNQfIKERDELKSQLCAALQQIENLRKELND 391
Cdd:TIGR04523 228 NQLKDNIEKKQQEINEKTTE----ISNTQTQLNQLKDEQNKIKKQLSEKQKE-LEQNNKKIKELEKQLNQLKSEISDLNN 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 392 VLSKRALQE--EELHCKEKKLNDIESHQAELELEVKNSLDTIHRLENELKRQSKSQSQIKAEkihLEEEITELKKSQSQD 469
Cdd:TIGR04523 303 QKEQDWNKElkSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRE---LEEKQNEIEKLKKEN 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 470 KVKLlemqESIKDLSAIRADLANKLAEEEKAKKAVFRDLSELTAQVKSKEEEtataITQLKLERDVHQRELEDLsssles 549
Cdd:TIGR04523 380 QSYK----QEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE----IERLKETIIKNNSEIKDL------ 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 550 vklkheqniqelmkhfKKEKSEAESHIRMLKAESLEDKNMAKAHLGQLEKLKSQCEKLTEELTHTENENKKLKLKYQSLK 629
Cdd:TIGR04523 446 ----------------TNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELE 509
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039742045 630 EELDKKEKYISTEEEHLRRMEESRLHLKDQLLCLETEQESILGVIGKEIDEACKTFSRDSLEKLK 694
Cdd:TIGR04523 510 EKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELK 574
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
328-641 |
4.80e-06 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 50.85 E-value: 4.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 328 KAQESIRQWKLKHKKLersmekQAETLVQLTEKNNQFIKERDELKS-----QLCAALQQIENLRKELNDVLSKRALQEEE 402
Cdd:COG5022 766 QALKRIKKIQVIQHGF------RLRRLVDYELKWRLFIKLQPLLSLlgsrkEYRSYLACIIKLQKTIKREKKLRETEEVE 839
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 403 LHCKE----KKLNDIESHQAELELEVKNSL--DTIHRLEN------ELKRQSKSQSQIKAEKIHLEEEITELKKSQSQDK 470
Cdd:COG5022 840 FSLKAevliQKFGRSLKAKKRFSLLKKETIylQSAQRVELaerqlqELKIDVKSISSLKLVNLELESEIIELKKSLSSDL 919
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 471 VKLLEMQE-------------SIKDLSAI---RADLANKLAEEEKAKKAVFRDLSELTAQVKSKEEETATAITQLKLERD 534
Cdd:COG5022 920 IENLEFKTeliarlkkllnniDLEEGPSIeyvKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKK 999
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 535 V---HQRELEDLSSSLESVKLKHEQNiQELMKHFKKEKSEAESHIRMLKAESLEDKNMAK--AHLGQLEKLKSQ------ 603
Cdd:COG5022 1000 ElaeLSKQYGALQESTKQLKELPVEV-AELQSASKIISSESTELSILKPLQKLKGLLLLEnnQLQARYKALKLRrensll 1078
|
330 340 350
....*....|....*....|....*....|....*....
gi 1039742045 604 CEKLTEELTHTENENKKLKLK-YQSLKEELDKKEKYIST 641
Cdd:COG5022 1079 DDKQLYQLESTENLLKTINVKdLEVTNRNLVKPANVLQF 1117
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
327-548 |
1.40e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 327 AKAQESIRQWKLKHKKLERSMEKQAETLVQLTEKNNQFIKERDELKSQLCAALQQIENLRKELNDvlskralQEEELHCK 406
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAA-------LEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 407 EKKLNDIESHQAELELEVKNSLDTIHRLEN----ELKRQSKSQSQIKAEKIHLEEEITELKKSQSQDKVKLLEMQESIKD 482
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRALYRLGRqpplALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039742045 483 LSAIRADLANKLAEEEKAKKAVFRDLSE---LTAQVKSKEEETATAITQLKLERDVHQRELEDLSSSLE 548
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAErqkLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
233-802 |
1.83e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.86 E-value: 1.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 233 RKDQEKATLAAQIENLTRDLENREKQQLQMLDQLTE-------IQNHFETCEANRKRTDLQLSELSQHAEEATKQaehyL 305
Cdd:TIGR04523 30 KQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKdeekinnSNNKIKILEQQIKDLNDKLKKNKDKINKLNSD----L 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 306 SEFQRSETLREEAEKRREDLKAKAQESIRQWKLKHKKLERSMEKQAETLVQLTEKNNQFIKERDELKSQLCAALQQIENL 385
Cdd:TIGR04523 106 SKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNI 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 386 RKELNDVLSKRALQEEELHCKEKK----------LNDIESHQAELELEVKNSLDTIHRLENELKRQSKSQSQIKAEKIH- 454
Cdd:TIGR04523 186 QKNIDKIKNKLLKLELLLSNLKKKiqknkslesqISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKi 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 455 ---------------------------LEEEITELKKSQSQDKVKllEMQESIKDLSAIRADLANKLAEEEKAKKAVFRD 507
Cdd:TIGR04523 266 kkqlsekqkeleqnnkkikelekqlnqLKSEISDLNNQKEQDWNK--ELKSELKNQEKKLEEIQNQISQNNKIISQLNEQ 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 508 LSELTAQVKSKE----------EETATAITQLKLERDVHQRELEDLSSSLESVKLK------HEQNIQELMKHFKKEKSE 571
Cdd:TIGR04523 344 ISQLKKELTNSEsensekqrelEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKiqnqekLNQQKDEQIKKLQQEKEL 423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 572 AESHIRMLKAESLEDKNMAKAHLGQLEKLKSQCEKLTEELTHTENENKKLKLKYQSLKEELDKKEKYISTEEEHLRRMEE 651
Cdd:TIGR04523 424 LEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNE 503
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 652 SRLHLKDQLLCLETEQESILGVIGKEIDEACKTFSRDSLEKLKVLTSGPQLHYDPhrwLAESKTKLQWLCEELKERESre 731
Cdd:TIGR04523 504 EKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKEN---LEKEIDEKNKEIEELKQTQK-- 578
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039742045 732 rsmrqQLAACRQELRELTEHKESELLCLFEHIERQEQLLEEFHQEkrglLEETQRKDEEVETLQPNLLFKL 802
Cdd:TIGR04523 579 -----SLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE----LEKAKKENEKLSSIIKNIKSKK 640
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
186-798 |
1.84e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.81 E-value: 1.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 186 DQGDDRRFRRGVEREKLSLEKQMADLRVQLNFNSMASELEEVKRCMERKDQEKATLAAQIENLTRDLENREKQQL--QML 263
Cdd:TIGR00618 187 AKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLlkQLR 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 264 DQLTEIQNHFETCEANRKRTDLQ-----LSELSQHAEEATKQAEHYLSEFQRSETLREEAEKRREDLKAKAQESIRQWKL 338
Cdd:TIGR00618 267 ARIEELRAQEAVLEETQERINRArkaapLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 339 KhkklersmekqaETLVQLTEKNNQFIKERDELKSQLCAALQQIENLRKELNDVlsKRALQEEELHCKEKKLNDIESHQA 418
Cdd:TIGR00618 347 L------------QTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQK--TTLTQKLQSLCKELDILQREQATI 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 419 ELELEVKNSldtihrLENELKRQSKSQSQIKAEKIHLEEEITELKKSQSQDKVKLLEMQESIKDLSAIRADLANKLAEEE 498
Cdd:TIGR00618 413 DTRTSAFRD------LQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQET 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 499 KAKKAVFRDLSELTAQ---VKSKEEETATAITQLKLERDVHQR--ELEDLSSSLESVKLKHEQNIQELMKHFKKEKSEAE 573
Cdd:TIGR00618 487 RKKAVVLARLLELQEEpcpLCGSCIHPNPARQDIDNPGPLTRRmqRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQ 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 574 SHIRMLKAESLEDkNMAKAHLGQLEKLKSQCEKLTEE----------LTHTENENKKLKLKYQSLKEELDKKEKYISTEE 643
Cdd:TIGR00618 567 EIQQSFSILTQCD-NRSKEDIPNLQNITVRLQDLTEKlseaedmlacEQHALLRKLQPEQDLQDVRLHLQQCSQELALKL 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 644 EHLRRMEESRLHLKDQL-LCLETEQESILGVIGKEIDEACKTFSRDSLEKLKVLTSGPQLHYDPHRWLAESKTKLQWLCE 722
Cdd:TIGR00618 646 TALHALQLTLTQERVREhALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIEN 725
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039742045 723 ELKERESRERSMRQQLAACRQELRELTEHKESELLCLFEHIERQEQLLEEFHQEKRGLLEETQRKDEEVETLQPNL 798
Cdd:TIGR00618 726 ASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLL 801
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
596-795 |
2.75e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 2.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 596 QLEKLKSQCEKLTEELTHTENENKKLKLKYQSLKEELDKKEKYISTEEEHLRRMEESRLHLKDQLLCLETEQESILGVIG 675
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 676 KEIDEACKTfSRDSLEKLKVLTSGPQLHYDPHRWLAESKTKLQWLCEELKERESRERSMRQQLAACRQELRELTEHKESE 755
Cdd:COG4942 108 ELLRALYRL-GRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1039742045 756 LLCLFEHIERQEQLLEEFHQEKRGLLEETQRKDEEVETLQ 795
Cdd:COG4942 187 RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELE 226
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
61-301 |
4.32e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 4.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 61 DRVERRLQEIEREMRLERelverrhdqlglvslKLQEALKKQEAKADENEDVIKRKLRQSETEKSQLEQELEISRRLLSQ 140
Cdd:COG4942 23 AEAEAELEQLQQEIAELE---------------KELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 141 SESNRETLLHQVEELRTQLIKAEgdqRGLQHQVPCISKQPLSHQDDQGDDRRFRRGVEREKLSLEKQMADLRVQLNfnsm 220
Cdd:COG4942 88 LEKEIAELRAELEAQKEELAELL---RALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLA---- 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 221 asELEEVKRCMERKDQEKATLAAQIENLTRDLENREKQQLQMLDQL----TEIQNHFETCEANRKRTDLQLSELSQHAEE 296
Cdd:COG4942 161 --ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLekelAELAAELAELQQEAEELEALIARLEAEAAA 238
|
....*
gi 1039742045 297 ATKQA 301
Cdd:COG4942 239 AAERT 243
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
365-866 |
4.69e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.37 E-value: 4.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 365 IKERDELKSQLCAALQQIENLRKElndvlskralQEEELHCKEKKLNDIESHQAELELEVKNSLDTIHRLE---NELKRQ 441
Cdd:PRK03918 174 IKRRIERLEKFIKRTENIEELIKE----------KEKELEEVLREINEISSELPELREELEKLEKEVKELEelkEEIEEL 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 442 SKSQSQIKAEKIHLEEEITELKKSQSQDKVKLLEMQESIKDLsairadlanklaEEEKAKKAVFRDLSELTAQVKSKEEE 521
Cdd:PRK03918 244 EKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL------------KELKEKAEEYIKLSEFYEEYLDELRE 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 522 TATAITQLKLERDVHQRELEDLSSSLESVKlkheqNIQELMKHFKKEKSEAEshirmlkaESLEDKNMAKAHLGQLEKLK 601
Cdd:PRK03918 312 IEKRLSRLEEEINGIEERIKELEEKEERLE-----ELKKKLKELEKRLEELE--------ERHELYEEAKAKKEELERLK 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 602 SQCEKLTEElthtenenkKLKLKYQSLKEELDKKEKYISTEEEHLRRMEESRLHLKDQLLCLEtEQESILGVIGKEIDEA 681
Cdd:PRK03918 379 KRLTGLTPE---------KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK-KAKGKCPVCGRELTEE 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 682 CKTfsrdsleklkvltsgpqlhydphRWLAESKTKLQWLCEELKERESRERSMRQQLAACRQELREltEHKESELLCLFE 761
Cdd:PRK03918 449 HRK-----------------------ELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKK--ESELIKLKELAE 503
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 762 HIERQEQLLEEFHqekrglLEETQRKDEEVETLQPNLLfKLppweEASQTTVnaqsaaqmEDKADRVNALQMSTRVALDH 841
Cdd:PRK03918 504 QLKELEEKLKKYN------LEELEKKAEEYEKLKEKLI-KL----KGEIKSL--------KKELEKLEELKKKLAELEKK 564
|
490 500
....*....|....*....|....*
gi 1039742045 842 LESVPEKLSLLEDFKDFRGASSLSE 866
Cdd:PRK03918 565 LDELEEELAELLKELEELGFESVEE 589
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
64-660 |
5.58e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.02 E-value: 5.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 64 ERRLQEIEREMRLERELVERRHDQLGLVSLKLQEALKKQEAKADENE------DVIKRKLRQSETEKSQLEQELEISRRL 137
Cdd:pfam05483 105 ENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNatrhlcNLLKETCARSAEKTKKYEYEREETRQV 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 138 LSQSESNRETLLHQVEELRTQlikAEGDQRGLQHQVpciskqplshQDDQGDDRRFRRGVEREKLSLEKQMADLRVQLN- 216
Cdd:pfam05483 185 YMDLNNNIEKMILAFEELRVQ---AENARLEMHFKL----------KEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITe 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 217 -FNSMASELEEVKRCMERKDQEKATLAAQIENLTRDLENREKQQLQMLDQLTEIQNHFETCEANRKRTDLQLSELSQHAE 295
Cdd:pfam05483 252 kENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTE 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 296 EATKQAEHYLSEFQRSETLREEAEKRR---EDLKAKAQESIRQWKLKHKKLERSMEKQAETLVQLTEKNNQFIKERDELK 372
Cdd:pfam05483 332 EKEAQMEELNKAKAAHSFVVTEFEATTcslEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELK 411
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 373 SQLcAALQQIENLRKELNDVLSKRALQEEE----LHCKEKKLNDIESHQAELELEVKNSLDTIHRLENELKRQSKSQSQI 448
Cdd:pfam05483 412 KIL-AEDEKLLDEKKQFEKIAEELKGKEQEliflLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIEL 490
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 449 KAEKIHLEEEITELKKSQSQDKVKLLEMQEsikdlsairaDLANKLAEEEKAKKAVfRDLSELTAQVKSKEEETATAITQ 528
Cdd:pfam05483 491 TAHCDKLLLENKELTQEASDMTLELKKHQE----------DIINCKKQEERMLKQI-ENLEEKEMNLRDELESVREEFIQ 559
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 529 LKLERDVHQRELEDLSSSLESVKLKHEQNIQELMK---HFKKEKSEAESHIRMLKAESLEDKNMAKAHLGQLEKLKSQCE 605
Cdd:pfam05483 560 KGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENkcnNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVN 639
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 1039742045 606 KLTEELTHTENENKKLKLKYQSLKEELDKKEKYISTEEEHLRRMEESRLHLKDQL 660
Cdd:pfam05483 640 KLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEI 694
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
261-490 |
6.87e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 6.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 261 QMLDQLTEIQNHFETceanrkrtdlqLSELSQHAEEATKQAEH------YLSEFQRSETLREEAEKRREDLKA-KAQESI 333
Cdd:COG4913 222 DTFEAADALVEHFDD-----------LERAHEALEDAREQIELlepireLAERYAAARERLAELEYLRAALRLwFAQRRL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 334 RQWKLKHKKLERSMEKQAETLVQLTEKNNQFIKERDELKSQLCAA--------LQQIENLRKELNDVLSKRALQEEELHC 405
Cdd:COG4913 291 ELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNggdrleqlEREIERLERELEERERRRARLEALLAA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 406 KEKKLNDIESHQAELELEVKNSLDTI----HRLENELKRQSKSQSQIKAEKIHLEEEITELKKSQSQDKVKLLEMQESIK 481
Cdd:COG4913 371 LGLPLPASAEEFAALRAEAAALLEALeeelEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALA 450
|
250
....*....|
gi 1039742045 482 D-LSAIRADL 490
Cdd:COG4913 451 EaLGLDEAEL 460
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
339-615 |
6.91e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 46.84 E-value: 6.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 339 KHKKLERSMEKQAETLVQLT---EKNNQFIKERDELKsqlcaaLQQIENLRKELNDVLSKralQEEELHCKEKKLNDIES 415
Cdd:PRK05771 44 RLRKLRSLLTKLSEALDKLRsylPKLNPLREEKKKVS------VKSLEELIKDVEEELEK---IEKEIKELEEEISELEN 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 416 HQAELELEvKNSLDTIHRLENELKR-QSKSQSQIKAEKIHleEEITELKKSQSQDKVKLLEMQESIKDLSAI--RADLAN 492
Cdd:PRK05771 115 EIKELEQE-IERLEPWGNFDLDLSLlLGFKYVSVFVGTVP--EDKLEELKLESDVENVEYISTDKGYVYVVVvvLKELSD 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 493 KLAEEekAKKAVFRdlseltaQVKSKEEETAT-AITQLKLERDVHQRELEDLSSSLESVKLKHEQNIQELMKHFKKEKSE 571
Cdd:PRK05771 192 EVEEE--LKKLGFE-------RLELEEEGTPSeLIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELER 262
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1039742045 572 AESHIRMLKAESL--------EDKnmakahlgqLEKLKSQCEKLTEELTHTE 615
Cdd:PRK05771 263 AEALSKFLKTDKTfaiegwvpEDR---------VKKLKELIDKATGGSAYVE 305
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
340-545 |
7.93e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 7.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 340 HKKLERsMEKQAETLVQLTEKNNQFIKERDELksqlcAALQQIENLRKELNDVLSKRALQEEELHCKEkklnDIESHQAE 419
Cdd:COG4913 241 HEALED-AREQIELLEPIRELAERYAAARERL-----AELEYLRAALRLWFAQRRLELLEAELEELRA----ELARLEAE 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 420 LElEVKNSLDTIHRLENELKRQSKSQSQIKAEkiHLEEEITELKKSQSQDKVKLLEMQESIKDLSAIRADLANKLAEEEK 499
Cdd:COG4913 311 LE-RLEARLDALREELDELEAQIRGNGGDRLE--QLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRA 387
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1039742045 500 AKKAVFRDLSELTAQVKSKEEETATAITQLKLERDVHQRELEDLSS 545
Cdd:COG4913 388 EAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
71-824 |
9.42e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.50 E-value: 9.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 71 EREMRLERELVERRHDQLGLVSLKLQE-ALKKQEAKADENED--VIKRKLRQSETEKSQLEQELEISRRLLSQSESNRET 147
Cdd:pfam02463 173 EALKKLIEETENLAELIIDLEELKLQElKLKEQAKKALEYYQlkEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 148 LLHQVEELrtQLIKAEGDQRGLQHQVPCISKQPLSHQDDQGDDRRFRRGVEREKLSLEKQMADLRVQLNFNSMASELEEV 227
Cdd:pfam02463 253 IESSKQEI--EKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKEL 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 228 KRCMERKDQEKATLAAQIENLTRDLENREKQQLQMLDQLTEIQNHFETCEANRKRTDLQLSELSQHAEE----------- 296
Cdd:pfam02463 331 KKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELkseeekeaqll 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 297 ---ATKQAEHYLSEFQRSETLREEAEKRREDLKAKAQES--IRQWKLKHKKLERSMEKQAETLVQLTEKNNQFIKERDEL 371
Cdd:pfam02463 411 lelARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEkeELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLL 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 372 KSQLCAALQQIENLRKELNDVLSKRALQEEELHCKEKKLNDIESHQAELELEVKNSLDTIHRLENELKRQSKSQSQIKAE 451
Cdd:pfam02463 491 SRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRAL 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 452 KIHLEEEIT-ELKKSQSQDKVKLLEMQESIKDLSAIRADLANKLAEEEKAKKAVFRDLSELTAQVKSKEEETATAITQLK 530
Cdd:pfam02463 571 TELPLGARKlRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRK 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 531 LERDVHQRELEDLSSSLESVKLKHEQNIQELMKHFKKEKSEAESHIRML-------KAESLEDKNMAKAHLGQLEKLKSQ 603
Cdd:pfam02463 651 GVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLeikkkeqREKEELKKLKLEAEELLADRVQEA 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 604 CEKLTEELTHTENENKKLKLKYQSLKEELDKKEKYISTEEEHLRRMEESRLHLKDQLLCLETE------QESILGVIGKE 677
Cdd:pfam02463 731 QDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEeklkaqEEELRALEEEL 810
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 678 IDEACKTFSRDSLEKLKVLTSGPQLHYdpHRWLAESKTKLQWLCEELKERESRERSMRQQLAACRQELRELTEHKESELL 757
Cdd:pfam02463 811 KEEAELLEEEQLLIEQEEKIKEEELEE--LALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDEL 888
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039742045 758 CLFEHIERQEQLLEEFHQEKRGLLEETQRKDEEVETLQPNLLFKLPPWEEASQTTVNAQSAAQMEDK 824
Cdd:pfam02463 889 ESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNK 955
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
95-319 |
1.12e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 95 LQEALKKQEAKADENEDVIKRKLRQSETEKSQLEQELEI--SRRLLSQSESNRETLLHQVEELRTQLIKAEGDQRGLQHQ 172
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 173 VPCISKQPLSHQD---DQGDDRRFRRgVEREKLSLEKQMADLRVQLNFNS--MASELEEVKRCMERKDQEKATLAAQIEN 247
Cdd:COG3206 242 LAALRAQLGSGPDalpELLQSPVIQQ-LRAQLAELEAELAELSARYTPNHpdVIALRAQIAALRAQLQQEAQRILASLEA 320
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039742045 248 LTRDLENREKQQLQMLDQLTEIQNHFetceanrKRTDLQLSELSQHAEEATKQAEHYLsefQRSETLREEAE 319
Cdd:COG3206 321 ELEALQAREASLQAQLAQLEARLAEL-------PELEAELRRLEREVEVARELYESLL---QRLEEARLAEA 382
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
287-525 |
1.23e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 287 LSELSQHAEEATKQAEHYLSEFQRSetlREEAEKRREDLKAKAQESIRQwklkHKKLERSMEKQAETLVQLTEKNNQFIK 366
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQE---IAELEKELAALKKEEKALLKQ----LAALERRIAALARRIRALEQELAALEA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 367 ERDELKSQLCAALQQIENLRKELNDVLskRALQEEELHCKEK----------------KLNDIESHQAELELEVKNSLDT 430
Cdd:COG4942 84 ELAELEKEIAELRAELEAQKEELAELL--RALYRLGRQPPLAlllspedfldavrrlqYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 431 IHRLENELKRQSKSQSQIKAEkihLEEEITELKKSQSqdkvkllEMQESIKDLSAIRADLANKLAEEEKAKKAVFRDLSE 510
Cdd:COG4942 162 LAALRAELEAERAELEALLAE---LEEERAALEALKA-------ERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
250
....*....|....*
gi 1039742045 511 LTAQVKSKEEETATA 525
Cdd:COG4942 232 LEAEAAAAAERTPAA 246
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
370-542 |
1.61e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.15 E-value: 1.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 370 ELKSQLCAALQQIENLRKELNDVLSKRALQEEELHCKEKKLNDIESHQAELELEVKNSLDTIHRLENELKrQSKSQSQIK 449
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLG-NVRNNKEYE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 450 AekihLEEEITELKKSQSQDKVKLLEMQESIKDLSAIRADLANKLAEEEKakkavfrDLSELTAQVKSKEEETATAITQL 529
Cdd:COG1579 93 A----LQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEA-------ELEEKKAELDEELAELEAELEEL 161
|
170
....*....|...
gi 1039742045 530 KLERDVHQRELED 542
Cdd:COG1579 162 EAEREELAAKIPP 174
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
3-588 |
1.83e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.60 E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 3 QLHTFHQSLRDL----SSEQVRLGDDLNRELFRRSRSDAETKRVLEELTGKLNeVQKPDVVSDRVERRLQEiEREMRLER 78
Cdd:pfam12128 259 RLSHLHFGYKSDetliASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELS-AADAAVAKDRSELEALE-DQHGAFLD 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 79 ELVERRH---DQLGLVSLKLQEALKKQEAKADENEDVikrklrqseTEKSQlEQELEISRRLLSQSESNRETLLHQVEEL 155
Cdd:pfam12128 337 ADIETAAadqEQLPSWQSELENLEERLKALTGKHQDV---------TAKYN-RRRSKIKEQNNRDIAGIKDKLAKIREAR 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 156 RTQLIKAEGDQRGLQhqvpciskQPLSHQDDQGddrrfRRGVEREKLSLEKQMADLRVQLNFNSMASELEEvkrcmerkd 235
Cdd:pfam12128 407 DRQLAVAEDDLQALE--------SELREQLEAG-----KLEFNEEEYRLKSRLGELKLRLNQATATPELLL--------- 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 236 qEKATLAAQIENLTRDLENREKQQLQMLDQLTEIQNHFETCEANRKRTDLQLSELSQHAEEATKQ---AEHYLSEFQRSE 312
Cdd:pfam12128 465 -QLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQlfpQAGTLLHFLRKE 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 313 T---------LREEAEKRREDLKAKAQESI--------------------------RQWKLKHKKLERSMEKQAETLVQL 357
Cdd:pfam12128 544 ApdweqsigkVISPELLHRTDLDPEVWDGSvggelnlygvkldlkridvpewaaseEELRERLDKAEEALQSAREKQAAA 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 358 TEKNNQFIKERDELKSQLCAALQQIENLR---KELNDVLSKRALQ-----EEELHCKEKKLNDIESHQAELELEVKNSLD 429
Cdd:pfam12128 624 EEQLVQANGELEKASREETFARTALKNARldlRRLFDEKQSEKDKknkalAERKDSANERLNSLEAQLKQLDKKHQAWLE 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 430 TIHR--LENELKRQSKSQSQIKAEKIHLEEEITELKKSQSQDKVKLLEMQ--------------ESIKDLSAIRADLANK 493
Cdd:pfam12128 704 EQKEqkREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALEtwykrdlaslgvdpDVIAKLKREIRTLERK 783
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 494 LAEEEKAKKAVFR-------------------------DLSELTAQVKSKEEETATAITQLKLERDVHQRELEDLSSSLE 548
Cdd:pfam12128 784 IERIAVRRQEVLRyfdwyqetwlqrrprlatqlsnierAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLR 863
|
650 660 670 680
....*....|....*....|....*....|....*....|
gi 1039742045 549 SVKLKHEQnIQELMKHFKKEKSEAESHIRMLKAESLEDKN 588
Cdd:pfam12128 864 GLRCEMSK-LATLKEDANSEQAQGSIGERLAQLEDLKLKR 902
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
232-637 |
1.98e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 1.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 232 ERKDQEKATLAAQIENLTRDLENREKQQLQMLDQLTEIQNHFETCEANRKRTDL--QLSELSQHAEEATKQAEHYLSEFQ 309
Cdd:COG4717 77 EEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLyqELEALEAELAELPERLEELEERLE 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 310 RSETLREEAEKRREDLKAKAQESIRQWKLKHKKLERSMEKQAETLVQLTEKNNQFIKERDELKSQLCAALQQIENLRKEL 389
Cdd:COG4717 157 ELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENEL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 390 NDVLSKRALQEEEL----------------HCKEKKLNDIESHQAELELEVKNSLDTIHRLENELKRQSKSQSQIKAEKI 453
Cdd:COG4717 237 EAAALEERLKEARLllliaaallallglggSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEEL 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 454 HLEEEITELKKSQSQDKVKLLEMQESIKDLSAIRADLANKLAEEEKAKKAVFRD-LSELTAQVKSKEEETATAITQLKLE 532
Cdd:COG4717 317 EEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQeIAALLAEAGVEDEEELRAALEQAEE 396
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 533 RDVHQRELEDLSSSLESvklkHEQNIQELMKHFKKEKSEAESHIRMLKAESLEDknmakahlgQLEKLKSQCEKLTEELT 612
Cdd:COG4717 397 YQELKEELEELEEQLEE----LLGELEELLEALDEEELEEELEELEEELEELEE---------ELEELREELAELEAELE 463
|
410 420
....*....|....*....|....*..
gi 1039742045 613 HTENENK--KLKLKYQSLKEELDKKEK 637
Cdd:COG4717 464 QLEEDGElaELLQELEELKAELRELAE 490
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
234-396 |
2.14e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 44.57 E-value: 2.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 234 KDQEKATLAAQIENLTR--DLENREKQQLQmlDQLTEIQNHFETCEANRKRTDLQLSELSQHAEEATKQAEHYLSEFQRS 311
Cdd:PRK09039 51 KDSALDRLNSQIAELADllSLERQGNQDLQ--DSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSE 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 312 ETLREEAEKRREDLKAKAQESIRQWKLKHKKLERSMEKQAETLVQLteknnqfikerDELKSQLCAAL----QQIENLRK 387
Cdd:PRK09039 129 KQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKI-----------ADLGRRLNVALaqrvQELNRYRS 197
|
170
....*....|...
gi 1039742045 388 E----LNDVLSKR 396
Cdd:PRK09039 198 EffgrLREILGDR 210
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
386-681 |
2.23e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 2.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 386 RKELNDVLSKRALQEEELHCKEKKLNDIESHQAELELEVKNSLDTIHRLENE----LKRQSKSQSQIKAEKIHLEEEITE 461
Cdd:TIGR02169 155 RRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRErekaERYQALLKEKREYEGYELLKEKEA 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 462 LKKSQSQDKVKLLEMQESIKDLSAIRADLANKLAEEEKAKKAVFRDLSELT----AQVKSKEEETATAITQLKLERDVHQ 537
Cdd:TIGR02169 235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGeeeqLRVKEKIGELEAEIASLERSIAEKE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 538 RELEDLSsslesvklKHEQNIQELMKHFKKEKSEAESHIRMLKAESLEDKNMAKAHLGQLEKLKSQCEKLTEELTHTENE 617
Cdd:TIGR02169 315 RELEDAE--------ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039742045 618 NKKLKLKYQSLKEELDKKEKYISTEEEHLRRMEESRLHLKDQLLCLE---TEQESILGVIGKEIDEA 681
Cdd:TIGR02169 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEakiNELEEEKEDKALEIKKQ 453
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
9-565 |
2.65e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.96 E-value: 2.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 9 QSLRDLSSEQVRLGDDLNRELFRRSRSDAETKrvLEELTGKLNEVQKPDVVSDRVERRLQEIEREM--RLERELVERRHD 86
Cdd:TIGR00618 345 RLLQTLHSQEIHIRDAHEVATSIREISCQQHT--LTQHIHTLQQQKTTLTQKLQSLCKELDILQREqaTIDTRTSAFRDL 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 87 QLGLVSLKLQEALKKQEAkadENEDVIKRKLRQSETEKSQLEQELEISRRLLSQSESNRETLLHQVEELRTQLIKAEGDQ 166
Cdd:TIGR00618 423 QGQLAHAKKQQELQQRYA---ELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLEL 499
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 167 RGLQHQVPCISKQPLSHQ---DDQGDDRRFRRGVEREKLSLEKQMADLRVQLNfnSMASELEEVKRCMERKDQEKATLAA 243
Cdd:TIGR00618 500 QEEPCPLCGSCIHPNPARqdiDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLT--SERKQRASLKEQMQEIQQSFSILTQ 577
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 244 QIENLTRDLENREKQQLQMLDQLteiqnhfetcEANRKRTDLQLSELSQHAEeatkQAEHYLSEFQRSETLREEAEKRRE 323
Cdd:TIGR00618 578 CDNRSKEDIPNLQNITVRLQDLT----------EKLSEAEDMLACEQHALLR----KLQPEQDLQDVRLHLQQCSQELAL 643
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 324 DLKAKAQEsirqwklkhkKLERSMEKQAETLVQLTEKNNQFIKERDELKSQLCAALQQIENLRKELNDVLSKRALQEEEL 403
Cdd:TIGR00618 644 KLTALHAL----------QLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHI 713
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 404 HCKEKKLNDIESHQAELELEVKNSLDTIHRLENELKRQSKSQSQIKA--------EKIHLEEEITELKKSQSQDKVKLLE 475
Cdd:TIGR00618 714 EEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTeahfnnneEVTAALQTGAELSHLAAEIQFFNRL 793
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 476 MQESIKDLSAIRADLANKLAEEEKAKKAVFRDLSELTAQVKSKEEETATAITQLKLErdvhQRELEDLSSSLESVKLKHE 555
Cdd:TIGR00618 794 REEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQ----LLKYEECSKQLAQLTQEQA 869
|
570
....*....|
gi 1039742045 556 QNIQELMKHF 565
Cdd:TIGR00618 870 KIIQLSDKLN 879
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
291-652 |
2.90e-04 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 44.62 E-value: 2.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 291 SQHAEEATKQAEHYLSEFQRSETLREEAEKRREDLKAKAQESIRQWKLKHKKLERSMEKQAETLVQLTEKNNQFIKERDE 370
Cdd:NF033838 57 KEHAKEVESHLEKILSEIQKSLDKRKHTQNVALNKKLSDIKTEYLYELNVLKEKSEAELTSKTKKELDAAFEQFKKDTLE 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 371 LKSQLCAALQQIENLRKELNDvlskralQEEELH--CKEKKLNDIESHQAELELEVKNSLDTIHRLENELKRQSKSQSQI 448
Cdd:NF033838 137 PGKKVAEATKKVEEAEKKAKD-------QKEEDRrnYPTNTYKTLELEIAESDVEVKKAELELVKEEAKEPRDEEKIKQA 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 449 KAEKIHLEEEITELKKSQSqDKVKLLEMQESIKDLSAIRADLAN-KLAEEEKAKKAVFRDLSELTAQVKSKEEETATAIT 527
Cdd:NF033838 210 KAKVESKKAEATRLEKIKT-DREKAEEEAKRRADAKLKEAVEKNvATSEQDKPKRRAKRGVLGEPATPDKKENDAKSSDS 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 528 QLKLErdvhqreledlssSLESVKLKHEQNIQELmkhfKKEKSEAESHIRMLKAEslEDKNMAKAHLGQLE--------K 599
Cdd:NF033838 289 SVGEE-------------TLPSPSLKPEKKVAEA----EKKVEEAKKKAKDQKEE--DRRNYPTNTYKTLEleiaesdvK 349
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039742045 600 LK-SQCEKLTEELTHTENENK--KLKLKYQSLKEELDKKEKyIST-----EEEHLRRMEES 652
Cdd:NF033838 350 VKeAELELVKEEAKEPRNEEKikQAKAKVESKKAEATRLEK-IKTdrkkaEEEAKRKAAEE 409
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
234-500 |
5.46e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.76 E-value: 5.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 234 KDQEKATLAA-------QIENLTRDLEN------REKQQ--LQMLDQLTEIQNHFETCEANRKRTDLQ-LSELSQHAEEA 297
Cdd:PRK05771 15 KSYKDEVLEAlhelgvvHIEDLKEELSNerlrklRSLLTklSEALDKLRSYLPKLNPLREEKKKVSVKsLEELIKDVEEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 298 TKQAEhylSEFQRSETLREEAEKRREDLKAKAQEsIRQWK--------LKHKK-----LERSMEKQAETLVQLTEKNNQF 364
Cdd:PRK05771 95 LEKIE---KEIKELEEEISELENEIKELEQEIER-LEPWGnfdldlslLLGFKyvsvfVGTVPEDKLEELKLESDVENVE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 365 IKERDELKSQLcaALQQIENLRKELNDVLSKRALQEEELhckekklndieshqaeleLEVKNSLDTIHRLENELKrqsks 444
Cdd:PRK05771 171 YISTDKGYVYV--VVVVLKELSDEVEEELKKLGFERLEL------------------EEEGTPSELIREIKEELE----- 225
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1039742045 445 qsQIKAEKIHLEEEITELKKSQSQDKVKLLEMQESIKDlsaiRADLANKLAEEEKA 500
Cdd:PRK05771 226 --EIEKERESLLEELKELAKKYLEELLALYEYLEIELE----RAEALSKFLKTDKT 275
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
66-388 |
6.07e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 6.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 66 RLQEIEREMRLERELVERRHDQLGLVSLKLQEALKKQEAkadenedvIKRKLRQSETEKSQLEQELEISRRLLSQSESNR 145
Cdd:TIGR02169 696 ELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEK--------LKERLEELEEDLSSLEQEIENVKSELKELEARI 767
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 146 ETLLHQVEELRTQL--IKAEGDQRGLQHQVPCISKQPLSHQDDQGDDRRFRRGVER---EKLSLEKQMADLRVQLN---- 216
Cdd:TIGR02169 768 EELEEDLHKLEEALndLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRltlEKEYLEKEIQELQEQRIdlke 847
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 217 --------FNSMASELEEVKRCMERKDQEKATLAAQIENLTRDLENREKqqlqmldQLTEIQNHFETCEANRKRTDLQLS 288
Cdd:TIGR02169 848 qiksiekeIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA-------QLRELERKIEELEAQIEKKRKRLS 920
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 289 ELSQHAEEATKQAEHYLSEFQRSETLREEaEKRREDLKAKAQ---ESIRQWKLKHKKLERSMEKQAETLVQLTEKNNQFI 365
Cdd:TIGR02169 921 ELKAKLEALEEELSEIEDPKGEDEEIPEE-ELSLEDVQAELQrveEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLE 999
|
330 340
....*....|....*....|...
gi 1039742045 366 KERDELKSQlcaaLQQIENLRKE 388
Cdd:TIGR02169 1000 EERKAILER----IEEYEKKKRE 1018
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
366-644 |
6.35e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 6.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 366 KERDELKSQLCAALQQIENLRKELNDVLSKRALQEEELHCKEKKLNDIESHQAELELEVKNSLDTIHRLENELKRQSKSQ 445
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 446 SQIKAEkihLEEEITELKKSQSQDKVKLLEMQESIKDLsAIRADLANKLAEEEKAKkavfrdlseltaqvkskeeetata 525
Cdd:COG4942 100 EAQKEE---LAELLRALYRLGRQPPLALLLSPEDFLDA-VRRLQYLKYLAPARREQ------------------------ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 526 ITQLKLERDvhqrELEDLSSSLESVKLKHEQNIQELmkhfkkekseaeshirmlkaesledknmaKAHLGQLEKLKSQCE 605
Cdd:COG4942 152 AEELRADLA----ELAALRAELEAERAELEALLAEL-----------------------------EEERAALEALKAERQ 198
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1039742045 606 K----LTEELTHTENENKKLKLKYQSLKEELDKKEKYISTEEE 644
Cdd:COG4942 199 KllarLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
70-665 |
7.36e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.49 E-value: 7.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 70 IEREMRLERELVERRHDQL-GLVSLKLQEALKKQEAKADENEDVIKRKLRQSETEKSQLEQELEIsrrlLSQSESNRE-- 146
Cdd:PRK02224 178 VERVLSDQRGSLDQLKAQIeEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEV----LEEHEERREel 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 147 -TLLHQVEELRTQLIKAEGDQRGLQHQVpciskqplSHQDDQGDDRRFRRGVEREKLSLEKQMADlRVQLNFNSMASELE 225
Cdd:PRK02224 254 eTLEAEIEDLRETIAETEREREELAEEV--------RDLRERLEELEEERDDLLAEAGLDDADAE-AVEARREELEDRDE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 226 EVKRCMERKDQEKATLAAQIENLTRDLENREKQQLQMLDQLTEIQNHFETCEANRKRTDLQLSELSQHAEEATKQAEHYL 305
Cdd:PRK02224 325 ELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAP 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 306 SEFQRSETLREEAEKRREDLKAKAQEsirqwklkhkkLERSMEKQAETLvqltEKNNQFikeRDELKSQLCAalQQIENl 385
Cdd:PRK02224 405 VDLGNAEDFLEELREERDELREREAE-----------LEATLRTARERV----EEAEAL---LEAGKCPECG--QPVEG- 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 386 rKELNDVLSKRALQEEELhckEKKLNDIESHQAELElevknslDTIHRLEnELKRQSKSQSQIKAEKIHLEEEITELKKS 465
Cdd:PRK02224 464 -SPHVETIEEDRERVEEL---EAELEDLEEEVEEVE-------ERLERAE-DLVEAEDRIERLEERREDLEELIAERRET 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 466 QSQDKVKLLEMQESIKDLsaiRADLANKLAEEEKAKKAVFRDLSELtAQVKSKEEETATAITQLKLERDVhQRELEDLSS 545
Cdd:PRK02224 532 IEEKRERAEELRERAAEL---EAEAEEKREAAAEAEEEAEEAREEV-AELNSKLAELKERIESLERIRTL-LAAIADAED 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 546 SLESVKLKHEQnIQELMKHFKKEKSEAESHIRMLkAESLEDKNMAKAHlGQLEKLKSQCEKLTEELTHTENENKKLKLKY 625
Cdd:PRK02224 607 EIERLREKREA-LAELNDERRERLAEKRERKREL-EAEFDEARIEEAR-EDKERAEEYLEQVEEKLDELREERDDLQAEI 683
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 1039742045 626 QSLKEELdkkekyisteeEHLRRMEESRLHLKDQLLCLET 665
Cdd:PRK02224 684 GAVENEL-----------EELEELRERREALENRVEALEA 712
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
34-501 |
8.14e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 8.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 34 RSDAETKRVLEELTGKLNEVQKPDVVSDRVERRLQEIEREMRLERElveRRHDQLglvSLKLQEALKKQEAKADENEDVI 113
Cdd:PTZ00121 1424 KKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEA---KKADEA---KKKAEEAKKADEAKKKAEEAKK 1497
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 114 KRKLRQSETEKSQLEQELEISRRLLSQSESNRETLLHQVEELRTQLIKAEGDQRGLQHQVPCISKQPLSHQDDQGDDRRF 193
Cdd:PTZ00121 1498 KADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKN 1577
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 194 RRGVEREKL-SLEKQMADLRVQLNFNSMASELEEVKRcmERKDQEKATLAAQIENLTRDLENREKQQLQMLDQLTEIQNH 272
Cdd:PTZ00121 1578 MALRKAEEAkKAEEARIEEVMKLYEEEKKMKAEEAKK--AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKA 1655
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 273 FETCEANRKRTDLQLSELSQHAEEATKQAEhylSEFQRSETLREEAEKRR--EDLKAKAQESIRqwklKHKKLERSMEKQ 350
Cdd:PTZ00121 1656 EEENKIKAAEEAKKAEEDKKKAEEAKKAEE---DEKKAAEALKKEAEEAKkaEELKKKEAEEKK----KAEELKKAEEEN 1728
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 351 AETLVQLTEKNNQFIKERDELKSQLcAALQQIENLRKElNDVLSKRALQEEELHCKEKKLNDIESHQAELELEVKnslDT 430
Cdd:PTZ00121 1729 KIKAEEAKKEAEEDKKKAEEAKKDE-EEKKKIAHLKKE-EEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIK---DI 1803
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039742045 431 IHRLENELKRQSKSQSQIKAEKIHLEEEITELKKSQSQDKVKLLEMQESIKDLSAIRADLANKLAEEEKAK 501
Cdd:PTZ00121 1804 FDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEK 1874
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
61-631 |
8.22e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.51 E-value: 8.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 61 DRVERRLQEIEREMRLERELVERrhdqlglvSLKLQEALKKQEAKADENEDVIKRKLRQSETEKSQLEQELEISRRLLSQ 140
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEK--------FIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKE 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 141 SESNRETLlhqvEELRTQLIKAEGDQRGLQHQVPCI------SKQPLSHQDDQGDDRRFRRGVEREKLSLEKQMADLRVQ 214
Cdd:PRK03918 233 LEELKEEI----EELEKELESLEGSKRKLEEKIRELeerieeLKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDE 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 215 LN--------FNSMASELEEVKRCMERKDQEKATLAAQIENLTRDLEnREKQQLQMLDQLTEIQNHFETCEAnrKRTDLQ 286
Cdd:PRK03918 309 LReiekrlsrLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLE-ELEERHELYEEAKAKKEELERLKK--RLTGLT 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 287 LSELSQHAEEATKQAEHYLSEFQRSETLREEAEKRREDLKaKAQESIRQWKLKHK--KLERSMEKQAETLVQLTEKNNQF 364
Cdd:PRK03918 386 PEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELK-KAIEELKKAKGKCPvcGRELTEEHRKELLEEYTAELKRI 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 365 IKERDELKSQLCAALQQIENLRKELND-----VLSKRALQEEELHCKEKKLNDIESHQAELELE-VKNSLDTIHRLENEL 438
Cdd:PRK03918 465 EKELKEIEEKERKLRKELRELEKVLKKeseliKLKELAEQLKELEEKLKKYNLEELEKKAEEYEkLKEKLIKLKGEIKSL 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 439 KRQSKSQSQIKAEKIHLEEEITELKKSQSQDKVKLLEMQ-ESIKDLSAIRADLANKLAEEEKAKKAVfRDLSELTAQVKS 517
Cdd:PRK03918 545 KKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLKELEPFYNEYLELKDAE-KELEREEKELKK 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 518 KEEETATAITQLKLErdvhQRELEDLSSSLESVKLKHEQ----NIQELMKHFKKEKSEAESHIRMLKA---ESLEDKNMA 590
Cdd:PRK03918 624 LEEELDKAFEELAET----EKRLEELRKELEELEKKYSEeeyeELREEYLELSRELAGLRAELEELEKrreEIKKTLEKL 699
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 1039742045 591 KAHLGQLEKLKSQCEKLTEELTHTENENKKLKlKYQSLKEE 631
Cdd:PRK03918 700 KEELEEREKAKKELEKLEKALERVEELREKVK-KYKALLKE 739
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
424-633 |
8.28e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.08 E-value: 8.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 424 VKNSLDTIHRLENELKRQSKSQSQIKAEKI-HLEEEITELKKSQSQDKVKLLEMQESIKDLSAIRADLANKLAE-----E 497
Cdd:PHA02562 193 IQQQIKTYNKNIEEQRKKNGENIARKQNKYdELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKikskiE 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 498 EKAKKAVFRDLSELTAQVKSKEEETATAITQLKLERDVHQRELEDLSSSLESVKLKHEQnIQELMKHFKKEKSEAESHIR 577
Cdd:PHA02562 273 QFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE-FNEQSKKLLELKNKISTNKQ 351
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1039742045 578 MLKAESLEDKNMAKAhlgqLEKLKSQCEKLTEELTHTENENKKLKLKYQSLKEELD 633
Cdd:PHA02562 352 SLITLVDKAKKVKAA----IEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKY 403
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
538-790 |
9.21e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 43.35 E-value: 9.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 538 RELEDLSSSL-ESVKLKHEQNIQE--LMKHFKKEKSEAESHIRM-LKAESLEDKNMAKAHLGQLEKlkSQCEKLTEELTH 613
Cdd:PLN02939 153 QALEDLEKILtEKEALQGKINILEmrLSETDARIKLAAQEKIHVeILEEQLEKLRNELLIRGATEG--LCVHSLSKELDV 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 614 TENENKKLKLKYQSLKEELDKkekyISTEEEHLRRMEESRLHLKDQLLCLETE----QESILGVIGKEID---EACKTFs 686
Cdd:PLN02939 231 LKEENMLLKDDIQFLKAELIE----VAETEERVFKLEKERSLLDASLRELESKfivaQEDVSKLSPLQYDcwwEKVENL- 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 687 RDSLEKLKVLTSGPQLHYDPHRWLAESKTKLQwlcEELKERESRERSMrQQLAACRQELRELTEHKESELLCLFEHIERQ 766
Cdd:PLN02939 306 QDLLDRATNQVEKAALVLDQNQDLRDKVDKLE---ASLKEANVSKFSS-YKVELLQQKLKLLEERLQASDHEIHSYIQLY 381
|
250 260
....*....|....*....|....
gi 1039742045 767 EQLLEEFHQEKRGLLEETQRKDEE 790
Cdd:PLN02939 382 QESIKEFQDTLSKLKEESKKRSLE 405
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
205-562 |
1.10e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.98 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 205 EKQMADLRVQLNfnSMASELEEVKRCMER-KDQEKATLAAQIENLTrdLENREKQQLQMLDQLTEIQNhfETCEANRK-- 281
Cdd:PRK11281 79 KEETEQLKQQLA--QAPAKLRQAQAELEAlKDDNDEETRETLSTLS--LRQLESRLAQTLDQLQNAQN--DLAEYNSQlv 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 282 -------RTDLQLSELSQHAEEATK--------------------QAEHYL----SEFQRSE-----TLREEAEKRREDL 325
Cdd:PRK11281 153 slqtqpeRAQAALYANSQRLQQIRNllkggkvggkalrpsqrvllQAEQALlnaqNDLQRKSlegntQLQDLLQKQRDYL 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 326 KAKAQESIRQWKL-----KHKKLERSmEKQAETLVQLTEKNNqfIKERDELKSQLcaalqqienlrkELNDVLSKRALQE 400
Cdd:PRK11281 233 TARIQRLEHQLQLlqeaiNSKRLTLS-EKTVQEAQSQDEAAR--IQANPLVAQEL------------EINLQLSQRLLKA 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 401 EElhckekKLNDIESHqaelELEVKNSLDTIhrlenelkrqskSQSQikaekIHLEEEITELKKS--------QSQDKVK 472
Cdd:PRK11281 298 TE------KLNTLTQQ----NLRVKNWLDRL------------TQSE-----RNIKEQISVLKGSlllsrilyQQQQALP 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 473 LLEMqesIKDLSAIRADLANKLAEEEKAKKAVFrDLSELTAQVKSKEEETAT-----AITQLKLERdvhqRE-LEDLSSS 546
Cdd:PRK11281 351 SADL---IEGLADRIADLRLEQFEINQQRDALF-QPDAYIDKLEAGHKSEVTdevrdALLQLLDER----RElLDQLNKQ 422
|
410 420
....*....|....*....|.
gi 1039742045 547 L-----ESVKLkhEQNIQELM 562
Cdd:PRK11281 423 LnnqlnLAINL--QLNQQQLL 441
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
61-363 |
1.43e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.42 E-value: 1.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 61 DRVERRLQEIEREMRLERELVERRHDQLGLVSLKLQEALKKQEAKADENE----------DVIKRKLRQSETEK-SQLEQ 129
Cdd:pfam17380 291 EKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQErmamererelERIRQEERKRELERiRQEEI 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 130 ELEISR-----RLLSQSESNRETLLHQVEELRTQLIKAEGDQRGLQHQVpciskqplshqddqgddrrfrrgVEREKLSL 204
Cdd:pfam17380 371 AMEISRmreleRLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQK-----------------------VEMEQIRA 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 205 EKQMADLRvqlnfnSMASELEEVKRCMERKDQEKATLAAQIENLTRDLENREKQQLQMLDQLTEIQnhfETCEANRKRTD 284
Cdd:pfam17380 428 EQEEARQR------EVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRK---RAEEQRRKILE 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 285 LQLSELSQHAEEATKQAEHYLSEFQRSETLREEAEKRRE-----------DLKAKAQESIRQWKLKHKKLErSMEKQAET 353
Cdd:pfam17380 499 KELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREaeeerrkqqemEERRRIQEQMRKATEERSRLE-AMEREREM 577
|
330
....*....|
gi 1039742045 354 LVQLTEKNNQ 363
Cdd:pfam17380 578 MRQIVESEKA 587
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
336-521 |
1.49e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 336 WKLKHKKLERSMEKQAETLVQLTEKNNQFIKERDELKSQlcaalQQIENLRKELndvlskralqEEELHCKEKKLNDIES 415
Cdd:PRK12704 25 RKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAK-----EEIHKLRNEF----------EKELRERRNELQKLEK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 416 HQAELELEVKNSLDTIHRLENELKRQSKSQSQIKAEKIHLEEEITELKKSQsqdkvklLEMQESIKDLSA--IRADLANK 493
Cdd:PRK12704 90 RLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQ-------LQELERISGLTAeeAKEILLEK 162
|
170 180
....*....|....*....|....*...
gi 1039742045 494 LaeEEKAKKavfrdlsELTAQVKSKEEE 521
Cdd:PRK12704 163 V--EEEARH-------EAAVLIKEIEEE 181
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
242-588 |
1.88e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.27 E-value: 1.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 242 AAQIENLTRDLENREKQQLQMLDQLTEIQNHFETCEANRKRtdlqlselsqHAEEATKQAEHYlsefQRSETLREEAEKR 321
Cdd:pfam02463 161 EAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELK----------LKEQAKKALEYY----QLKEKLELEEEYL 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 322 REDLKAKA-QESIRQWKLKHKKLERSMEKQAETLVQLTEKNNQFIKERDELKSQLCAALQQIENLRKELNDVLSKRALQE 400
Cdd:pfam02463 227 LYLDYLKLnEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLE 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 401 EELHCKEKKLNDIESHQAELELEVKNSLDTIHRLENELKRQSKSQSQIKAEKIHLEEEITELKKSQSQDKVKLLEMQESI 480
Cdd:pfam02463 307 RRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERL 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 481 KDLSAIRADLANKLAEEEKAKKAVFRDLSELTAQVKSKEEETATAITQLKLERDVHQRELEDLSSSLESVKLKHEQNIQE 560
Cdd:pfam02463 387 SSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELE 466
|
330 340
....*....|....*....|....*...
gi 1039742045 561 LMKHFKKEKSEAESHIRMLKAESLEDKN 588
Cdd:pfam02463 467 LKKSEDLLKETQLVKLQEQLELLLSRQK 494
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
462-639 |
2.04e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.69 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 462 LKKSQSQDKVKLLEMQ-ESIKDLSAIRADLANKLAEEEkAKKAVFRDLSELTAQVKSKEEETAtaitqlKLERDVHQREl 540
Cdd:PRK12704 24 VRKKIAEAKIKEAEEEaKRILEEAKKEAEAIKKEALLE-AKEEIHKLRNEFEKELRERRNELQ------KLEKRLLQKE- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 541 EDLSSSLESVK------LKHEQNIQELMKHFKKEKSEAESHIRMLKAESLEDKNM----AKAHLgqLEKLKsqcEKLTEE 610
Cdd:PRK12704 96 ENLDRKLELLEkreeelEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLtaeeAKEIL--LEKVE---EEARHE 170
|
170 180
....*....|....*....|....*....
gi 1039742045 611 LTHTenenkkLKLKYQSLKEELDKKEKYI 639
Cdd:PRK12704 171 AAVL------IKEIEEEAKEEADKKAKEI 193
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
203-400 |
2.15e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 203 SLEKQMADLRVQLNfnSMASELEEVKRCMERKDQEKATLAAQIENLTRDLENREKQQLQMLDQLTEIQNHFETCEANRKR 282
Cdd:COG3883 27 ELQAELEAAQAELD--ALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGSVSY 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 283 TDL-----QLSELSQHAEEATKQAEHYLSEFQRSETLREEAEKRREDL---KAKAQESIRQWKLKHKKLERSMEKQAETL 354
Cdd:COG3883 105 LDVllgseSFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELeakLAELEALKAELEAAKAELEAQQAEQEALL 184
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1039742045 355 VQLTEKNNQFIKERDELKSQLCAALQQIENLRKELNDVLSKRALQE 400
Cdd:COG3883 185 AQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
129-577 |
2.32e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 2.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 129 QELEISRRLLSQSESNRETLLHQVEELRTQLIKAEGDQRGLQHQVpciskQPLSHQDDQGDDRRFRRGVEREKLSLEKQM 208
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREEL-----EKLEKLLQLLPLYQELEALEAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 209 ADLRVQLnfnsmaSELEEVKRCMERKDQEKATLAAQIENLTRDLENREKQQLQmldqltEIQNHFETCEANRKRTDLQLS 288
Cdd:COG4717 149 EELEERL------EELRELEEELEELEAELAELQEELEELLEQLSLATEEELQ------DLAEELEELQQRLAELEEELE 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 289 ELSQHAEEATKQAEHYLSEFQRSETLREEAEKRREDLKAKAQESIRQWKLKHKKLERSMEKQAETLVQLTEKnnqfiker 368
Cdd:COG4717 217 EAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLAL-------- 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 369 deLKSQLCAALQQIENLRKELNDVLSKRALQEEELHCKEKKLNDIESHQAELELEVKNSLDTIHRLENELKRQsKSQSQI 448
Cdd:COG4717 289 --LFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEEL-EEELQL 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 449 KAEKIHLEEEITELKKSQSQDKVKLLEMQESIKDLSAIRADLANKLAEEEKAKKAVFRDLSEltAQVKSKEEETATAITQ 528
Cdd:COG4717 366 EELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDE--EELEEELEELEEELEE 443
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 1039742045 529 LKLERDVHQRELEDLSSSLEsvKLKHEQNIQELMKHFKKEKSEAESHIR 577
Cdd:COG4717 444 LEEELEELREELAELEAELE--QLEEDGELAELLQELEELKAELRELAE 490
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
105-685 |
2.58e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.96 E-value: 2.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 105 KADENEDVIKRKLRQSETEKSQLEQEL-----EISRRL----LSQSESNRETLLHQVEELRTQLIKAEGDQrglqhqvpc 175
Cdd:TIGR01612 946 ILNKNIDTIKESNLIEKSYKDKFDNTLidkinELDKAFkdasLNDYEAKNNELIKYFNDLKANLGKNKENM--------- 1016
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 176 iskqpLSHQDDQGDdrRFRRGVEREKLSLEKQMADLRVQLnFNSMASELEEVKRCMERKDQ--EKATLAAQIENLTRDLE 253
Cdd:TIGR01612 1017 -----LYHQFDEKE--KATNDIEQKIEDANKNIPNIEIAI-HTSIYNIIDEIEKEIGKNIEllNKEILEEAEINITNFNE 1088
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 254 NREKQQLQMLDQLTEIQNHFETCEANRKRTDLQlsELSQHAEEATKQAEHYLsefQRSETLREEAEKRREDLKAKAQESI 333
Cdd:TIGR01612 1089 IKEKLKHYNFDDFGKEENIKYADEINKIKDDIK--NLDQKIDHHIKALEEIK---KKSENYIDEIKAQINDLEDVADKAI 1163
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 334 RQWKLKhkklerSMEKQAETLVQLTEKNNQFIKERDELKSQLC------AALQQIENLRKELNDVLSKRALQ--EEElhc 405
Cdd:TIGR01612 1164 SNDDPE------EIEKKIENIVTKIDKKKNIYDEIKKLLNEIAeiekdkTSLEEVKGINLSYGKNLGKLFLEkiDEE--- 1234
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 406 KEKKLNDIESHQAELElevknSLDTIHRLENELKRQSKSQSQIKAEKIHLEEEITELKK----SQSQDK---------VK 472
Cdd:TIGR01612 1235 KKKSEHMIKAMEAYIE-----DLDEIKEKSPEIENEMGIEMDIKAEMETFNISHDDDKDhhiiSKKHDEnisdireksLK 1309
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 473 LLEMQESIKDLSAIRADLANKLAEEEKAKKAVFRDLSELTA---------------QVKSKEEETATAITQLKLERDVHQ 537
Cdd:TIGR01612 1310 IIEDFSEESDINDIKKELQKNLLDAQKHNSDINLYLNEIANiynilklnkikkiidEVKEYTKEIEENNKNIKDELDKSE 1389
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 538 RELEDL--SSSLESVKLKHE------------QNIQELMKHFKKEKSEAESHIRMLKAE----SLEDKNMAKAHLGQLEK 599
Cdd:TIGR01612 1390 KLIKKIkdDINLEECKSKIEstlddkdideciKKIKELKNHILSEESNIDTYFKNADENnenvLLLFKNIEMADNKSQHI 1469
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 600 LKSQCEKLTEELTHTENENKKLKLKYQSLKEELDKKEKYISTEEEHLRRMEE---------SRLHLKDQLLCLETEQESI 670
Cdd:TIGR01612 1470 LKIKKDNATNDHDFNINELKEHIDKSKGCKDEADKNAKAIEKNKELFEQYKKdvtellnkySALAIKNKFAKTKKDSEII 1549
|
650
....*....|....*
gi 1039742045 671 LgvigKEIDEACKTF 685
Cdd:TIGR01612 1550 I----KEIKDAHKKF 1560
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
36-423 |
2.91e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.82 E-value: 2.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 36 DAETKRVLEELTGKLNEVQKPDVV---SDRVERRLQEIEREMR-LERELverrhdqlglvslklqEALKKQeAKADENED 111
Cdd:PRK11281 55 EAEDKLVQQDLEQTLALLDKIDRQkeeTEQLKQQLAQAPAKLRqAQAEL----------------EALKDD-NDEETRET 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 112 VIKRKLRQSETEKSQLEQELEISRRLLSQSESNRETLLHQVEelRTQLIKAEGDQRGLQhqvpcISKQPLSHQDDQGDdr 191
Cdd:PRK11281 118 LSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPE--RAQAALYANSQRLQQ-----IRNLLKGGKVGGKA-- 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 192 rfRRGVEREKLSLEKQMADLRVQLNfnsmaseleevkrcmeRKDQEKATLAAQIENLTRDLENREKQQLQmlDQLTEIQN 271
Cdd:PRK11281 189 --LRPSQRVLLQAEQALLNAQNDLQ----------------RKSLEGNTQLQDLLQKQRDYLTARIQRLE--HQLQLLQE 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 272 hfetcEANRKRtdLQLSElsQHAEEATKQaehylsefqrsetlreeaekrreDLKAKAQESirqwKLKHKKLERSMeKQA 351
Cdd:PRK11281 249 -----AINSKR--LTLSE--KTVQEAQSQ-----------------------DEAARIQAN----PLVAQELEINL-QLS 291
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039742045 352 ETLVQLTEKNNQFIKERDELKSQLCAALQ-------QIENLRKELndVLSKRALQEEELHCKEKKLNDIESHQAELELE 423
Cdd:PRK11281 292 QRLLKATEKLNTLTQQNLRVKNWLDRLTQsernikeQISVLKGSL--LLSRILYQQQQALPSADLIEGLADRIADLRLE 368
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
516-771 |
3.14e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.45 E-value: 3.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 516 KSKEEETATAITQLKLerdVHqreLEDLSSSLESVKLKH-EQNIQELMKH-------FKKEKSEAESHIRMLKAESLEDK 587
Cdd:PRK05771 15 KSYKDEVLEALHELGV---VH---IEDLKEELSNERLRKlRSLLTKLSEAldklrsyLPKLNPLREEKKKVSVKSLEELI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 588 NMAKAHLGQLEKlksQCEKLTEELTHTENENKKLK--------LKYQSLKEELDKKEKYISTEEEHLRRMEESRLHL--- 656
Cdd:PRK05771 89 KDVEEELEKIEK---EIKELEEEISELENEIKELEqeierlepWGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLesd 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 657 KDQLLCLETEQES---ILGVIGKEIDEACKTFSRDSLEKLKVLTSG-PQlhydphrwlaesktklqwlcEELKERESRER 732
Cdd:PRK05771 166 VENVEYISTDKGYvyvVVVVLKELSDEVEEELKKLGFERLELEEEGtPS--------------------ELIREIKEELE 225
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1039742045 733 SMRQQLAACRQELRELTEHKESELLCLFEHI----ERQEQLLE 771
Cdd:PRK05771 226 EIEKERESLLEELKELAKKYLEELLALYEYLeielERAEALSK 268
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
25-502 |
3.52e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 3.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 25 LNRELFRRSRSDAETKRVLEELTGKLNEVQKPDVVSDRVERRLQEIEREMRLERELVERRhDQLGLVSLKLQEALKKQEA 104
Cdd:PRK03918 243 LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFY-EEYLDELREIEKRLSRLEE 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 105 KADENEDVIKrKLRQSETEKSQLEQELEISRRLLSQSESNRET------LLHQVEELRTQLIKAEGDQrgLQHQVPCISK 178
Cdd:PRK03918 322 EINGIEERIK-ELEEKEERLEELKKKLKELEKRLEELEERHELyeeakaKKEELERLKKRLTGLTPEK--LEKELEELEK 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 179 QPLSHQDDQGDDRRFRRGVEREKLSLEKQMADLR----------VQLNFNSMASELEEVKRCMERKDQEKATLAAQIENL 248
Cdd:PRK03918 399 AKEEIEEEISKITARIGELKKEIKELKKAIEELKkakgkcpvcgRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKL 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 249 TRDLENREKQQLQMLDQLTEIQNHFETCEANRKRTDLQLSELSQHAEEATKQAEhylsefqRSETLREEAEKRREDLKaK 328
Cdd:PRK03918 479 RKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKE-------KLIKLKGEIKSLKKELE-K 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 329 AQESIRQWKLKHKKLERSMEKQAETLVQLTEKNNQFIKERDELKSQLCAALQQ---IENLRKELNDVLSKRALQEEELHC 405
Cdd:PRK03918 551 LEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEyleLKDAEKELEREEKELKKLEEELDK 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 406 KEKKLNDIESHQAEL-----ELEVKNSLDTIHRLENELKRQSKSQSQIKAEKIHLEEEITELKKSQSQDKVKLLEMQESI 480
Cdd:PRK03918 631 AFEELAETEKRLEELrkeleELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAK 710
|
490 500
....*....|....*....|..
gi 1039742045 481 KDLSAIRADLANKLAEEEKAKK 502
Cdd:PRK03918 711 KELEKLEKALERVEELREKVKK 732
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
455-644 |
3.80e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 3.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 455 LEEEITELKKSQSQDKVKLLEMQESIKDLSAIRADLANKLAEEEKAKKAVFRDLSELTAQVKSKEEETATAITQL----- 529
Cdd:COG3883 21 KQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALyrsgg 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 530 ---KLERDVHQRELEDLSSSLESVK--LKHEQNIQELMKHFKKEKSEAESHIRMLKAESLEDKNMAKAHLGQLEKLKSQC 604
Cdd:COG3883 101 svsYLDVLLGSESFSDFLDRLSALSkiADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQ 180
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1039742045 605 EKLTEELthtENENKKLKLKYQSLKEELDKKEKYISTEEE 644
Cdd:COG3883 181 EALLAQL---SAEEAAAEAQLAELEAELAAAEAAAAAAAA 217
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
247-558 |
4.29e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 4.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 247 NLTRDLENREKQQLQMLDQLteiQNHFETceANRKRTD-LQLSELSQHAEEATKQAEHYLSEF--QRSETLREEAEKRRE 323
Cdd:COG3206 104 NLDEDPLGEEASREAAIERL---RKNLTV--EPVKGSNvIEISYTSPDPELAAAVANALAEAYleQNLELRREEARKALE 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 324 DLKAKAQEsirqwklkhkkLERSMEKQAETLVQLTEKNNQFikerdELKSQLCAALQQIENLRKELNDVLSKRAlqeeel 403
Cdd:COG3206 179 FLEEQLPE-----------LRKELEEAEAALEEFRQKNGLV-----DLSEEAKLLLQQLSELESQLAEARAELA------ 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 404 hckekklnDIESHQAELELEVKNSLDTIHRLenelkRQSKSQSQIKAEKIHLEEEITELKKSQSQDKVKLLEMQESIKDL 483
Cdd:COG3206 237 --------EAEARLAALRAQLGSGPDALPEL-----LQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAAL 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 484 -SAIRADLANKLAEEEKAKKAVFRDLSELTAQVKSKEEETATA------ITQLKLERDVHQRELEDLSSSLESVKLKHEQ 556
Cdd:COG3206 304 rAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELpeleaeLRRLEREVEVARELYESLLQRLEEARLAEAL 383
|
..
gi 1039742045 557 NI 558
Cdd:COG3206 384 TV 385
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
44-556 |
4.90e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 40.86 E-value: 4.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 44 EELTGKLNEVQKPDVVSDRVERRLQEIEREMRLERELVERRHDQLGLVSLKLQEALKKQEAKADENEDvIKRKLRQSETE 123
Cdd:pfam05483 233 KEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELED-IKMSLQRSMST 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 124 KSQLEQELEISRRLLSQSESNRETLLHQ-----------VEELRTQLIKAEGDQRGLQH-------QVPCISKQPLSHQD 185
Cdd:pfam05483 312 QKALEEDLQIATKTICQLTEEKEAQMEElnkakaahsfvVTEFEATTCSLEELLRTEQQrleknedQLKIITMELQKKSS 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 186 DQGDDRRFRRGVEREKLSLEKQMADLRVQLN----FNSMASEL----EEVKRCMERKDQEKATLAAQIENLTRDLENREK 257
Cdd:pfam05483 392 ELEEMTKFKNNKEVELEELKKILAEDEKLLDekkqFEKIAEELkgkeQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLK 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 258 QQLQMLDQL-------TEIQNH-----FETCEANRKRTDLQLsELSQHAEEATKQAEHYLSEFQRSETLREEAEKRREDL 325
Cdd:pfam05483 472 EVEDLKTELekeklknIELTAHcdkllLENKELTQEASDMTL-ELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDEL 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 326 KAKAQESIRQWKLKHKKLERSMEKQAETLVQLTEKNnqfiKERDELKSQLCAALQQIENLRKELNDVLSKRALQEEELHC 405
Cdd:pfam05483 551 ESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKE----KQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSA 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 406 KEKKLNDIESHQAELELEVKNSLDTIHRLENELkrqsksQSQIKAEKIHLEEEITELKKSQSQDKVKLLEMQESIKDLSA 485
Cdd:pfam05483 627 ENKQLNAYEIKVNKLELELASAKQKFEEIIDNY------QKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQH 700
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039742045 486 IRADLANKLAEEEKAKKAVFRDLSELTAQVKSKEEETATAITQLKLERDVHQRELEDLSSSLESVKLKHEQ 556
Cdd:pfam05483 701 KIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEK 771
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
99-483 |
5.11e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.77 E-value: 5.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 99 LKKQEAKADENEDVIKRKLRQSETEKSQLEQELEISRRLLSQSESNRETLLHQVEELRTQLIKAEGDQRGLQhqvpcisk 178
Cdd:TIGR04523 312 LKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYK-------- 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 179 qplshqddqgddrrfrrgveREKLSLEKQMADLRVQLNFNSMASELEEVKrcMERKDQEKATLAAQIENLTRDLENREKQ 258
Cdd:TIGR04523 384 --------------------QEIKNLESQINDLESKIQNQEKLNQQKDEQ--IKKLQQEKELLEKEIERLKETIIKNNSE 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 259 QLQMLDQLTEIQNHFETCEANRKRTDLQLSELSQHAEEATKQAEHYLSEFQRSETLREEAEKRREDLKAKAQE---SIRQ 335
Cdd:TIGR04523 442 IKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDltkKISS 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 336 WKLKHKKLERSMEKQAETLVQLTEKNNQ--FIKERDELKSQLCAALQQIENLRKELNDVLSKRALQEEELHCKEKKLNDI 413
Cdd:TIGR04523 522 LKEKIEKLESEKKEKESKISDLEDELNKddFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDL 601
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 414 ESHQAELELEVKNSLDTIHRLENELKRQSKSQSQIKAEKIHLEEEITELKKSQSQDKVKLLEMQESIKDL 483
Cdd:TIGR04523 602 IKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKES 671
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
43-651 |
6.02e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.54 E-value: 6.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 43 LEELTGKLNEVQKPDVVSDRVERRLQEIEREMRLERELVERRHDQLGLVSLKLQEALKKQEAKADENEdvikrKLRQSET 122
Cdd:pfam01576 358 LEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESE-----RQRAELA 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 123 EK-SQLEQELEISRRLLSQSESNRETLLHQVEELRTQLIKAEGDQRGLQHQVPCISKQPLSHQDDQGDDRRFRRGVEREK 201
Cdd:pfam01576 433 EKlSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAK 512
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 202 LSLEKQMADLRVQLNfnSMASELEEVKRCMERKDQEKATLAAQIENLTRDLENREKQQLQMLDQLTEIQNHFE--TCEAN 279
Cdd:pfam01576 513 RNVERQLSTLQAQLS--DMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDdlLVDLD 590
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 280 RKRTDLQLSELSQHAEEATKQAEHYLSEFQRSETLREEAEKRREDLKAKAQESIRQWKLKHKK-LERSMEKQAETLVQLT 358
Cdd:pfam01576 591 HQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAKEeLERTNKQLRAEMEDLV 670
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 359 EKNNQFIKERDELKSQLCAALQQIENLR---KELNDVLS--------------------KRALQEEELHCKEKK---LND 412
Cdd:pfam01576 671 SSKDDVGKNVHELERSKRALEQQVEEMKtqlEELEDELQatedaklrlevnmqalkaqfERDLQARDEQGEEKRrqlVKQ 750
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 413 IESHQAELELEVK---NSLDTIHRLENELKrqsKSQSQIKAEKIHLEEEITELKKSQSQDKvkllEMQESIKDLSAIRAD 489
Cdd:pfam01576 751 VRELEAELEDERKqraQAVAAKKKLELDLK---ELEAQIDAANKGREEAVKQLKKLQAQMK----DLQRELEEARASRDE 823
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 490 LANKLAEEEKAKKAVFRDLSELTAQVKSKEEetatAITQLKLERDVHQRELEDLSSSLESVKlkheqniqelmkhfkKEK 569
Cdd:pfam01576 824 ILAQSKESEKKLKNLEAELLQLQEDLAASER----ARRQAQQERDELADEIASGASGKSALQ---------------DEK 884
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 570 SEAESHIRMLKAESLEDKNMAKAHLGQLEKLKSQCEKLTEELT--------------HTENENKKLKLKYQSLKEELDKK 635
Cdd:pfam01576 885 RRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAaerstsqksesarqQLERQNKELKAKLQEMEGTVKSK 964
|
650
....*....|....*..
gi 1039742045 636 EKY-ISTEEEHLRRMEE 651
Cdd:pfam01576 965 FKSsIAALEAKIAQLEE 981
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
65-395 |
6.69e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 6.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 65 RRLQEIEREMRLERELVerrhdqLGLVSLKLQEALKKQEAKADENEDVIKRKLRQSETEKSQLEQELEISRRLLSQSES- 143
Cdd:COG4913 587 GTRHEKDDRRRIRSRYV------LGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDe 660
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 144 -NRETLLHQVEELRTQLIKAEGDQRGLQHqvpciskqplshqddqgddrrfrrgvereklsLEKQMADLRVQLnfNSMAS 222
Cdd:COG4913 661 iDVASAEREIAELEAELERLDASSDDLAA--------------------------------LEEQLEELEAEL--EELEE 706
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 223 ELEEVKRCMERKDQEKATLAAQIENLTRDLENREKQQL--------QMLDQLTEIQNHFETCEANRKRTDLQLSELSQHA 294
Cdd:COG4913 707 ELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARlelralleERFAAALGDAVERELRENLEERIDALRARLNRAE 786
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 295 EEATKQAEHYLSEFqrsetlREEAEKRREDLkakaqESIRQWKLKHKKLERS--MEKQAETLVQLTEKNNQFIKerdELK 372
Cdd:COG4913 787 EELERAMRAFNREW------PAETADLDADL-----ESLPEYLALLDRLEEDglPEYEERFKELLNENSIEFVA---DLL 852
|
330 340
....*....|....*....|...
gi 1039742045 373 SQLCAALQQIENLRKELNDVLSK 395
Cdd:COG4913 853 SKLRRAIREIKERIDPLNDSLKR 875
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
400-507 |
6.86e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.23 E-value: 6.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 400 EEELHCKEKKLNDIESHQAELELEVKNSLDTIHRLENELKRQSKSQSqikaEKIHLEEEITELKKSQSQDKVKLLEMQES 479
Cdd:COG2433 412 EEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEER----REIRKDREISRLDREIERLERELEEERER 487
|
90 100
....*....|....*....|....*...
gi 1039742045 480 IKDLSAiradlanKLAEEEKAKKAVFRD 507
Cdd:COG2433 488 IEELKR-------KLERLKELWKLEHSG 508
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
3-268 |
7.47e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 7.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 3 QLHTFHQSLRDLSsEQVRLGDDLnRELFRRSRSDAETKRVLEELTGKLNevqkpdvvSDRVERRLQEIEREMRLERELVE 82
Cdd:COG4913 236 DLERAHEALEDAR-EQIELLEPI-RELAERYAAARERLAELEYLRAALR--------LWFAQRRLELLEAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 83 RRHDQLglvslklqEALKKQEAKADENEDVIKRKLRQSETE-KSQLEQELEISRRLLSQSESNRETLLHQVEELRTQLIK 161
Cdd:COG4913 306 RLEAEL--------ERLEARLDALREELDELEAQIRGNGGDrLEQLEREIERLERELEERERRRARLEALLAALGLPLPA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 162 AEGDQRGLQHQVpciskqplshqddqgddRRFRRGVEREKLSLEKQMADLRVQLnfnsmaseleevkrcmERKDQEKATL 241
Cdd:COG4913 378 SAEEFAALRAEA-----------------AALLEALEEELEALEEALAEAEAAL----------------RDLRRELREL 424
|
250 260
....*....|....*....|....*..
gi 1039742045 242 AAQIENLTRDLENREKQQLQMLDQLTE 268
Cdd:COG4913 425 EAEIASLERRKSNIPARLLALRDALAE 451
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
291-453 |
7.51e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.15 E-value: 7.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 291 SQHAEEATKQAEHYLSEFQRS-ETLREEAE----KRREDLKAKAQESIRQWKLKHKKLERSMEKQAETLVQLTEKNNQFI 365
Cdd:PRK12704 30 EAKIKEAEEEAKRILEEAKKEaEAIKKEALleakEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKRE 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 366 KERDELKSQLCAALQQIENLRKELNDvlskraLQEEELhckeKKLNDIESHQAElelEVKNSLdtIHRLENELKRQS--- 442
Cdd:PRK12704 110 EELEKKEKELEQKQQELEKKEEELEE------LIEEQL----QELERISGLTAE---EAKEIL--LEKVEEEARHEAavl 174
|
170
....*....|....*....
gi 1039742045 443 --------KSQSQIKAEKI 453
Cdd:PRK12704 175 ikeieeeaKEEADKKAKEI 193
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
13-520 |
8.52e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 39.88 E-value: 8.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 13 DLSSEQVRLgDDLNRELFRRSRSDAETKRVLEELTGKLNEVQKPDVVSDRVERRLQEIEREM-RLERELVERRHDQLGLV 91
Cdd:PRK01156 191 KLKSSNLEL-ENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKnRYESEIKTAESDLSMEL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 92 SLKLQEALKKQEAKADENEDVIKRKLRQSE--TEKSQLEQELEISRRLLSQSESNRETL--LHQVEELRTQLIKAEGDQR 167
Cdd:PRK01156 270 EKNNYYKELEERHMKIINDPVYKNRNYINDyfKYKNDIENKKQILSNIDAEINKYHAIIkkLSVLQKDYNDYIKKKSRYD 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 168 GLQHQVPCISKQPLSHQD-----DQGDDRRFRRGVEREKLSLEKQMADLRVQLNFNSMASELEEVKRCMERKDQEKATLA 242
Cdd:PRK01156 350 DLNNQILELEGYEMDYNSylksiESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLN 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 243 AQIENLTRDLENREKQqLQML---------------DQLTEIQNHFETcEANRKRTDLQLSELSQHA----EEATKQAEH 303
Cdd:PRK01156 430 QRIRALRENLDELSRN-MEMLngqsvcpvcgttlgeEKSNHIINHYNE-KKSRLEEKIREIEIEVKDidekIVDLKKRKE 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 304 YLS--EFQRSETLREEAEKRREDLKaKAQESIRQWKLKHKKLERSMEKQAETLVQLTEKNNQfikerDELKSQLCAALQQ 381
Cdd:PRK01156 508 YLEseEINKSINEYNKIESARADLE-DIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRT-----SWLNALAVISLID 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 382 IENLRKELNDVLSKRALQEEELHCKEKKLNDIESHQAELELEVKNSLDTIHRLENELKRQSKSQSQIKAEKIHLEEEITE 461
Cdd:PRK01156 582 IETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAE 661
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039742045 462 LK---KSQSQDKVKLLEMQESIKDLSAIRADLANKLAEEEKAKKAVFRDLSELTAQVKSKEE 520
Cdd:PRK01156 662 IDsiiPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINE 723
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
309-485 |
9.02e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 39.69 E-value: 9.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 309 QRSETLREEAEKRREDLKAKAQESIRQWKLkhkklersmEKQAETLVQLTEKNNQFIKERDELKSQLCAALQQIENLRKE 388
Cdd:PRK12705 26 KKRQRLAKEAERILQEAQKEAEEKLEAALL---------EAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDAR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 389 LNDVlskrALQEEELHCKEKKLNDIESHQAELELEVKNSLDTIHRLENELKRQ---SKSQSQIKAEKIHL----EEEITE 461
Cdd:PRK12705 97 AEKL----DNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQARKlllKLLDAELEEEKAQRvkkiEEEADL 172
|
170 180
....*....|....*....|....
gi 1039742045 462 LKKSQSQDKVKLLeMQESIKDLSA 485
Cdd:PRK12705 173 EAERKAQNILAQA-MQRIASETAS 195
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
223-421 |
9.63e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.90 E-value: 9.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 223 ELEEVKRCMERKDQEKATLAaQIENLTRDLEnREKQQLQMLDQLTEIQNHFetceANRKRTDLQLSELSQHAEEATKQAE 302
Cdd:COG4913 236 DLERAHEALEDAREQIELLE-PIRELAERYA-AARERLAELEYLRAALRLW----FAQRRLELLEAELEELRAELARLEA 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 303 hylsEFQRSETLREEAEKRREDLKAKAQES-----------IRQWKLKHKKLERSMEKQAETLVQLTEKNNQFIKERDEL 371
Cdd:COG4913 310 ----ELERLEARLDALREELDELEAQIRGNggdrleqlereIERLERELEERERRRARLEALLAALGLPLPASAEEFAAL 385
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1039742045 372 KSQLCAALQQIENLRKELNDVLSKRALQEEELhckEKKLNDIESHQAELE 421
Cdd:COG4913 386 RAEAAALLEALEEELEALEEALAEAEAALRDL---RRELRELEAEIASLE 432
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
192-683 |
9.86e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.03 E-value: 9.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 192 RFRRGVEREKLSLEKQMADLRVQLNFNSMASELEEVKRCMERKDQEKATLAAQIENLTRDLENREKQQLQMLDQLTEIQN 271
Cdd:TIGR00606 190 TLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDN 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 272 HFETCEANRKRTDLQLSELSQHAEEATKQAEhylsefqrsETLREEAEKRREDLKAKAQESIR-QWKLKHKKLERSMEKQ 350
Cdd:TIGR00606 270 EIKALKSRKKQMEKDNSELELKMEKVFQGTD---------EQLNDLYHNHQRTVREKERELVDcQRELEKLNKERRLLNQ 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 351 AETLVQLTEKNNQFIKERDELKSQLCAALQQIENLRKELnDVLSKRALQEEELHCKEKKLNDIESHQAELELEVKNSLDT 430
Cdd:TIGR00606 341 EKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLEL-DGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQS 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 431 IHRLENELKRQSKSQSQIKAEKIHLEEEITELKKSQSQDKVKLLEMQE-SIKDLSAIRADLANKLAEEEKAKKAVfrDLS 509
Cdd:TIGR00606 420 KERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEgSSDRILELDQELRKAERELSKAEKNS--LTE 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 510 ELTAQVKSKEEETATAITQLKLERDvhqreledlssslESVKLKHEQNIQELMKHFKKEKSEAESHIRMLKAESLEDKNM 589
Cdd:TIGR00606 498 TLKKEVKSLQNEKADLDRKLRKLDQ-------------EMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTS 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039742045 590 AKAHLGQLEKLKSQCEKLTEELTHTENENKKLKLKYQSLKEELDKKEKYISTEEEHLRRMEESRLHlkdqlLCLETEQES 669
Cdd:TIGR00606 565 LLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFD-----VCGSQDEES 639
|
490
....*....|....
gi 1039742045 670 ILGVIGKEIDEACK 683
Cdd:TIGR00606 640 DLERLKEEIEKSSK 653
|
|
| |
