NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1039751636|ref|XP_017172604|]
View 

protein CMSS1 isoform X2 [Mus musculus]

Protein Classification

P-loop NTPase family protein( domain architecture ID 1562424)

P-loop NTPase (nucleoside triphosphate hydrolase) family protein contains two conserved sequence signatures, the Walker A motif (the P-loop proper) and Walker B motif which bind, respectively, the beta and gamma phosphate moieties of the bound nucleotide (typically ATP or GTP), and a Mg(2+) cation

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
P-loop_NTPase super family cl38936
P-loop containing Nucleoside Triphosphate Hydrolases; Members of the P-loop NTPase domain ...
 73-226 3.45e-29

P-loop containing Nucleoside Triphosphate Hydrolases; Members of the P-loop NTPase domain superfamily are characterized by a conserved nucleotide phosphate-binding motif, also referred to as the Walker A motif (GxxxxGK[S/T], where x is any residue), and the Walker B motif (hhhh[D/E], where h is a hydrophobic residue). The Walker A and B motifs bind the beta-gamma phosphate moiety of the bound nucleotide (typically ATP or GTP) and the Mg2+ cation, respectively. The P-loop NTPases are involved in diverse cellular functions, and they can be divided into two major structural classes: the KG (kinase-GTPase) class which includes Ras-like GTPases and its circularly permutated YlqF-like; and the ASCE (additional strand catalytic E) class which includes ATPase Binding Cassette (ABC), DExD/H-like helicases, 4Fe-4S iron sulfur cluster binding proteins of NifH family, RecA-like F1-ATPases, and ATPases Associated with a wide variety of Activities (AAA). Also included are a diverse set of nucleotide/nucleoside kinase families.


The actual alignment was detected with superfamily member pfam14617:

Pssm-ID: 476819  Cd Length: 250  Bit Score: 109.95  E-value: 3.45e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039751636  73 SVIELEELHLPDSCFLKANDLT-----HSLSSYLKEICPKWVKLRKTHNEKKSVLMLILCSSAVRALELIRSLTAFKG-D 146
Cdd:pfam14617  72 SDVELSDLYISASAIEDTTSFTkprtlDNLPDYIEHLPGFTKKLSQRPKSNGSPHTLVLTIAALRAADVLRPLKKLQTkG 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039751636 147 AKVMKLFAKHIKVQEQVKLLEKRVIHLGVGTPGRIKELVKQDGLHLNPLKFLVFDWNWRDQKLRRMMDIPEIRKEVFELL 226
Cdd:pfam14617 152 FKVAKLFAKHIKLEEHITYCKASRIGIGVGTPGRIADLLENESLSVDNLKYIILDASFRDIKNRGILDIRETRKAVIKFL 231
 
Name Accession Description Interval E-value
CMS1 pfam14617
U3-containing 90S pre-ribosomal complex subunit; This is a family of fungal and plant ...
 73-226 3.45e-29

U3-containing 90S pre-ribosomal complex subunit; This is a family of fungal and plant CMS1-like proteins. The family has similarity to the DEAD-box helicases.


Pssm-ID: 373164  Cd Length: 250  Bit Score: 109.95  E-value: 3.45e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039751636  73 SVIELEELHLPDSCFLKANDLT-----HSLSSYLKEICPKWVKLRKTHNEKKSVLMLILCSSAVRALELIRSLTAFKG-D 146
Cdd:pfam14617  72 SDVELSDLYISASAIEDTTSFTkprtlDNLPDYIEHLPGFTKKLSQRPKSNGSPHTLVLTIAALRAADVLRPLKKLQTkG 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039751636 147 AKVMKLFAKHIKVQEQVKLLEKRVIHLGVGTPGRIKELVKQDGLHLNPLKFLVFDWNWRDQKLRRMMDIPEIRKEVFELL 226
Cdd:pfam14617 152 FKVAKLFAKHIKLEEHITYCKASRIGIGVGTPGRIADLLENESLSVDNLKYIILDASFRDIKNRGILDIRETRKAVIKFL 231
DEADc cd00268
DEAD-box helicase domain of DEAD box helicases; DEAD-box helicases comprise a diverse family ...
 111-229 3.36e-08

DEAD-box helicase domain of DEAD box helicases; DEAD-box helicases comprise a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP-binding region.


Pssm-ID: 350669 [Multi-domain]  Cd Length: 196  Bit Score: 52.06  E-value: 3.36e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039751636 111 LRKTHNEKKSVLMLILCSS---AVRALELIRSLTAFKGdAKVMKLFAKhIKVQEQVKLLEKRViHLGVGTPGRIKELVKQ 187
Cdd:cd00268    53 LPEPKKKGRGPQALVLAPTrelAMQIAEVARKLGKGTG-LKVAAIYGG-APIKKQIEALKKGP-DIVVGTPGRLLDLIER 129

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1039751636 188 DGLHLNPLKFLVFDwnwrdqklrrmmdipeirkEVFELLDMG 229
Cdd:cd00268   130 GKLDLSNVKYLVLD-------------------EADRMLDMG 152
SrmB COG0513
Superfamily II DNA and RNA helicase [Replication, recombination and repair];
147-229 2.37e-07

Superfamily II DNA and RNA helicase [Replication, recombination and repair];


Pssm-ID: 440279 [Multi-domain]  Cd Length: 420  Bit Score: 50.92  E-value: 2.37e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039751636 147 AKVMKLFAKHIKV-----------QEQVKLLEKRViHLGVGTPGRIKELVKQDGLHLNPLKFLVFDwnwrdqklrrmmdi 215
Cdd:COG0513    88 AEELRKLAKYLGLrvatvyggvsiGRQIRALKRGV-DIVVATPGRLLDLIERGALDLSGVETLVLD-------------- 152

                          90
                  ....*....|....
gi 1039751636 216 peirkEVFELLDMG 229
Cdd:COG0513   153 -----EADRMLDMG 161
PRK01297 PRK01297
ATP-dependent RNA helicase RhlB; Provisional
 138-220 2.42e-04

ATP-dependent RNA helicase RhlB; Provisional


Pssm-ID: 234938 [Multi-domain]  Cd Length: 475  Bit Score: 41.82  E-value: 2.42e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039751636 138 RSLTAFKGdAKVMKlFAKHIKVQEQVKLLEKRVIHLGVGTPGRIKELVKQDGLHLNPLKFLVFDwnwrdqKLRRMMD--- 214
Cdd:PRK01297  183 AALTKYTG-LNVMT-FVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD------EADRMLDmgf 254


                  ....*.
gi 1039751636 215 IPEIRK 220
Cdd:PRK01297  255 IPQVRQ 260
 
Name Accession Description Interval E-value
CMS1 pfam14617
U3-containing 90S pre-ribosomal complex subunit; This is a family of fungal and plant ...
 73-226 3.45e-29

U3-containing 90S pre-ribosomal complex subunit; This is a family of fungal and plant CMS1-like proteins. The family has similarity to the DEAD-box helicases.


Pssm-ID: 373164  Cd Length: 250  Bit Score: 109.95  E-value: 3.45e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039751636  73 SVIELEELHLPDSCFLKANDLT-----HSLSSYLKEICPKWVKLRKTHNEKKSVLMLILCSSAVRALELIRSLTAFKG-D 146
Cdd:pfam14617  72 SDVELSDLYISASAIEDTTSFTkprtlDNLPDYIEHLPGFTKKLSQRPKSNGSPHTLVLTIAALRAADVLRPLKKLQTkG 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039751636 147 AKVMKLFAKHIKVQEQVKLLEKRVIHLGVGTPGRIKELVKQDGLHLNPLKFLVFDWNWRDQKLRRMMDIPEIRKEVFELL 226
Cdd:pfam14617 152 FKVAKLFAKHIKLEEHITYCKASRIGIGVGTPGRIADLLENESLSVDNLKYIILDASFRDIKNRGILDIRETRKAVIKFL 231
DEADc cd00268
DEAD-box helicase domain of DEAD box helicases; DEAD-box helicases comprise a diverse family ...
 111-229 3.36e-08

DEAD-box helicase domain of DEAD box helicases; DEAD-box helicases comprise a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP-binding region.


Pssm-ID: 350669 [Multi-domain]  Cd Length: 196  Bit Score: 52.06  E-value: 3.36e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039751636 111 LRKTHNEKKSVLMLILCSS---AVRALELIRSLTAFKGdAKVMKLFAKhIKVQEQVKLLEKRViHLGVGTPGRIKELVKQ 187
Cdd:cd00268    53 LPEPKKKGRGPQALVLAPTrelAMQIAEVARKLGKGTG-LKVAAIYGG-APIKKQIEALKKGP-DIVVGTPGRLLDLIER 129

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1039751636 188 DGLHLNPLKFLVFDwnwrdqklrrmmdipeirkEVFELLDMG 229
Cdd:cd00268   130 GKLDLSNVKYLVLD-------------------EADRMLDMG 152
SrmB COG0513
Superfamily II DNA and RNA helicase [Replication, recombination and repair];
147-229 2.37e-07

Superfamily II DNA and RNA helicase [Replication, recombination and repair];


Pssm-ID: 440279 [Multi-domain]  Cd Length: 420  Bit Score: 50.92  E-value: 2.37e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039751636 147 AKVMKLFAKHIKV-----------QEQVKLLEKRViHLGVGTPGRIKELVKQDGLHLNPLKFLVFDwnwrdqklrrmmdi 215
Cdd:COG0513    88 AEELRKLAKYLGLrvatvyggvsiGRQIRALKRGV-DIVVATPGRLLDLIERGALDLSGVETLVLD-------------- 152

                          90
                  ....*....|....
gi 1039751636 216 peirkEVFELLDMG 229
Cdd:COG0513   153 -----EADRMLDMG 161
DEADc_DDX39 cd17950
DEAD-box helicase domain of DEAD box protein 39; DDX39A is involved in pre-mRNA splicing and ...
 157-201 6.67e-05

DEAD-box helicase domain of DEAD box protein 39; DDX39A is involved in pre-mRNA splicing and is required for the export of mRNA out of the nucleus. DDX39B is an essential splicing factor required for association of U2 small nuclear ribonucleoprotein with pre-mRNA, and it also plays an important role in mRNA export from the nucleus to the cytoplasm. Diseases associated with DDX39A (also called UAP56-Related Helicase, 49 kDa) include gastrointestinal stromal tumor and inflammatory bowel disease 6, while diseases associated with DDX39B (also called 56 kDa U2AF65-Associated Protein) include Plasmodium vivax malaria. DDX39 is a member of the DEAD-box helicases, a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP-binding region.


Pssm-ID: 350708 [Multi-domain]  Cd Length: 208  Bit Score: 42.72  E-value: 6.67e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1039751636 157 IKVQEQVKLLEKRVIHLGVGTPGRIKELVKQDGLHLNPLKFLVFD 201
Cdd:cd17950   109 VPIKKDIEVLKNKCPHIVVGTPGRILALVREKKLKLSHVKHFVLD 153
DEADc_DDX1 cd17938
DEAD-box helicase domain of DEAD box protein 1; DEAD box protein 1 (DDX1) acts as an ...
 157-201 7.94e-05

DEAD-box helicase domain of DEAD box protein 1; DEAD box protein 1 (DDX1) acts as an ATP-dependent RNA helicase, able to unwind both RNA-RNA and RNA-DNA duplexes. It possesses 5' single-stranded RNA overhang nuclease activity as well as ATPase activity on various RNA, but not DNA polynucleotides. DDX1 may play a role in RNA clearance at DNA double-strand breaks (DSBs), thereby facilitating the template-guided repair of transcriptionally active regions of the genome. It may also be involved in 3'-end cleavage and polyadenylation of pre-mRNAs. DDX1 is a member of the DEAD-box helicases, a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP-binding region.


Pssm-ID: 350696 [Multi-domain]  Cd Length: 204  Bit Score: 42.31  E-value: 7.94e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1039751636 157 IKVQEQVKLLEKRViHLGVGTPGRIKELVKQDGLHLNPLKFLVFD 201
Cdd:cd17938   101 VKAREQLKRLESGV-DIVVGTPGRLEDLIKTGKLDLSSVRFFVLD 144
PRK01297 PRK01297
ATP-dependent RNA helicase RhlB; Provisional
 138-220 2.42e-04

ATP-dependent RNA helicase RhlB; Provisional


Pssm-ID: 234938 [Multi-domain]  Cd Length: 475  Bit Score: 41.82  E-value: 2.42e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039751636 138 RSLTAFKGdAKVMKlFAKHIKVQEQVKLLEKRVIHLGVGTPGRIKELVKQDGLHLNPLKFLVFDwnwrdqKLRRMMD--- 214
Cdd:PRK01297  183 AALTKYTG-LNVMT-FVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD------EADRMLDmgf 254


                  ....*.
gi 1039751636 215 IPEIRK 220
Cdd:PRK01297  255 IPQVRQ 260
DEADc_DDX20 cd17943
DEAD-box helicase domain of DEAD box protein 20; DDX20 (also called DEAD Box Protein DP 103, ...
 117-201 3.05e-04

DEAD-box helicase domain of DEAD box protein 20; DDX20 (also called DEAD Box Protein DP 103, Component Of Gems 3, Gemin-3, and SMN-Interacting Protein) interacts directly with SMN (survival of motor neurons), the spinal muscular atrophy gene product, and may play a catalytic role in the function of the SMN complex on ribonucleoproteins. Diseases associated with DDX20 include spinal muscular atrophy and muscular atrophy. DDX20 is a member of the DEAD-box helicases, a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP-binding region.


Pssm-ID: 350701 [Multi-domain]  Cd Length: 192  Bit Score: 40.33  E-value: 3.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039751636 117 EKKSVLMLIL---CSSAVRALELIRSLTAFKGDAKVmKLFAKHIKVQEQVKLLEKrvIHLGVGTPGRIKELVKQDGLHLN 193
Cdd:cd17943    55 ERRHPQVLILaptREIAVQIHDVFKKIGKKLEGLKC-EVFIGGTPVKEDKKKLKG--CHIAVGTPGRIKQLIELGALNVS 131


                  ....*...
gi 1039751636 194 PLKFLVFD 201
Cdd:cd17943   132 HVRLFVLD 139
DEADc_DDX4 cd18052
DEAD-box helicase domain of DEAD box protein 4; DEAD box protein 4 (DDX4, also known as VASA ...
 157-229 3.75e-04

DEAD-box helicase domain of DEAD box protein 4; DEAD box protein 4 (DDX4, also known as VASA homolog) is an ATP-dependent RNA helicase required during spermatogenesis and is essential for the germline integrity. DEAD-box helicases are a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP-binding region.


Pssm-ID: 350810 [Multi-domain]  Cd Length: 264  Bit Score: 40.72  E-value: 3.75e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039751636 157 IKVQEQVKLLEKRViHLGVGTPGRIKELVKQDGLHLNPLKFLVFDwnwrdqKLRRMMDI---PEIRKEVfELLDMG 229
Cdd:cd18052   158 VSVGHQIRQIEKGC-HILVATPGRLLDFIGRGKISLSKLKYLILD------EADRMLDMgfgPEIRKLV-SEPGMP 225
DEADc_DDX3_DDX4 cd17967
DEAD-box helicase domain of ATP-dependent RNA helicases DDX3 and DDX4; This subfamily includes ...
 167-220 6.47e-04

DEAD-box helicase domain of ATP-dependent RNA helicases DDX3 and DDX4; This subfamily includes Drosophila melanogaster Vasa, which is essential for development. DEAD box protein 3 (DDX3) has been reported to display a high level of RNA-independent ATPase activity stimulated by both RNA and DNA. DEAD box protein 4 (DDX4, also known as VASA homolog) is an ATP-dependent RNA helicase required during spermatogenesis and is essential for the germline integrity. DDX3 and DDX4 are members of the DEAD-box helicases, a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP-binding region.


Pssm-ID: 350725 [Multi-domain]  Cd Length: 221  Bit Score: 39.78  E-value: 6.47e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1039751636 167 EKRVIHLGVGTPGRIKELVKQDGLHLNPLKFLVFDwnwrdqKLRRMMDI---PEIRK 220
Cdd:cd17967   125 LLRGCDILVATPGRLVDFIERGRISLSSIKFLVLD------EADRMLDMgfePQIRK 175
DEADc_DDX3 cd18051
DEAD-box helicase domain of DEAD box protein 3; DDX3 (also called helicase-like protein, DEAD ...
 159-222 2.41e-03

DEAD-box helicase domain of DEAD box protein 3; DDX3 (also called helicase-like protein, DEAD box, X isoform, or DDX14) has been reported to display a high level of RNA-independent ATPase activity stimulated by both RNA and DNA. This protein has multiple conserved domains and is thought to play roles in both the nucleus and cytoplasm. Nuclear roles include transcriptional regulation, mRNP assembly, pre-mRNA splicing, and mRNA export. In the cytoplasm, this protein is thought to be involved in translation, cellular signaling, and viral replication. Misregulation of this gene has been implicated in tumorigenesis. Diseases associated with DDX3 include mental retardation, X-linked 102 and agenesis of the corpus callosum, with facial anomalies and robin sequence. DDX3 is a member of the DEAD-box helicases, a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP-binding region.


Pssm-ID: 350809 [Multi-domain]  Cd Length: 249  Bit Score: 38.10  E-value: 2.41e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039751636 159 VQEQVKLLEkRVIHLGVGTPGRIKELVKQDGLHLNPLKFLVFDwnwrdqKLRRMMDI---PEIRKEV 222
Cdd:cd18051   145 IGQQMRDLE-RGCHLLVATPGRLVDMLERGKIGLDYCKYLVLD------EADRMLDMgfePQIRRIV 204
DEADc_DDX49 cd17955
DEAD-box helicase domain of DEAD box protein 49; DDX49 (also called Dbp8) is a member of the ...
 161-201 4.60e-03

DEAD-box helicase domain of DEAD box protein 49; DDX49 (also called Dbp8) is a member of the DEAD-box helicases, a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP-binding region.


Pssm-ID: 350713 [Multi-domain]  Cd Length: 204  Bit Score: 37.20  E-value: 4.60e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1039751636 161 EQVKLLEKRViHLGVGTPGRIKELVKQDGLH---LNPLKFLVFD 201
Cdd:cd17955   109 KQALELSKRP-HIVVATPGRLADHLRSSDDTtkvLSRVKFLVLD 151
DEADc_DDX24 cd17946
DEAD-box helicase domain of DEAD box protein 24; The human DDX24 gene encodes a DEAD box ...
 107-201 6.29e-03

DEAD-box helicase domain of DEAD box protein 24; The human DDX24 gene encodes a DEAD box protein, which shows little similarity to any of the other known human DEAD box proteins, but shows a high similarity to mouse Ddx24 at the amino acid level. MDM2 mediates nonproteolytic polyubiquitylation of the DEAD-Box RNA helicase DDX24. DDX24 is a member of the DEAD-box helicases, a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.


Pssm-ID: 350704 [Multi-domain]  Cd Length: 235  Bit Score: 36.83  E-value: 6.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039751636 107 KWVKLRKTHNEKKSVLMLILCSSAVRALELIRSLTAFK--GDAKVMKLFAKhIKVQEQVKLLEKRViHLGVGTPGRIKEL 184
Cdd:cd17946    55 SQKSSNGVGGKQKPLRALILTPTRELAVQVKDHLKAIAkyTNIKIASIVGG-LAVQKQERLLKKRP-EIVVATPGRLWEL 132

                          90       100
                  ....*....|....*....|
gi 1039751636 185 VKQDGLHLNPLK---FLVFD 201
Cdd:cd17946   133 IQEGNEHLANLKslrFLVLD 152
PRK11776 PRK11776
ATP-dependent RNA helicase DbpA; Provisional
 172-201 9.58e-03

ATP-dependent RNA helicase DbpA; Provisional


Pssm-ID: 236977 [Multi-domain]  Cd Length: 460  Bit Score: 36.70  E-value: 9.58e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 1039751636 172 HLGVGTPGRIKELVKQDGLHLNPLKFLVFD 201
Cdd:PRK11776  125 HIIVGTPGRILDHLRKGTLDLDALNTLVLD 154
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH