|
Name |
Accession |
Description |
Interval |
E-value |
| S-100 |
cd00213 |
S-100: S-100 domain, which represents the largest family within the superfamily of proteins ... |
2-74 |
2.21e-24 |
|
S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents the interaction site of S100 proteins with their target proteins. There is experimental evidence showing that many S100 proteins have multiple binding partners with diverse mode of interaction with different targets. In addition to S100 proteins (such as S100A1,-3,-4,-6,-7,-10,-11,and -13), this group includes the ''fused'' gene family, a group of calcium binding S100-related proteins. The ''fused'' gene family includes multifunctional epidermal differentiation proteins - profilaggrin, trichohyalin, repetin, hornerin, and cornulin; functionally these proteins are associated with keratin intermediate filaments and partially crosslinked to the cell envelope. These ''fused'' gene proteins contain N-terminal sequence with two Ca-binding EF-hands motif, which may be associated with calcium signaling in epidermal cells and autoprocessing in a calcium-dependent manner. In contrast to S100 proteins, "fused" gene family proteins contain an extraordinary high number of almost perfect peptide repeats with regular array of polar and charged residues similar to many known cell envelope proteins.
:
Pssm-ID: 238131 [Multi-domain] Cd Length: 88 Bit Score: 99.87 E-value: 2.21e-24
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039765608 2 SALLESITSMIEIFQQYSTSDKEEETLSKEELKELLEGQLQAVLKNPDDQDIAEVFMQMLDVDHDDKLDFAEY 74
Cdd:cd00213 1 SELEKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEF 73
|
|
| PRK12678 super family |
cl36163 |
transcription termination factor Rho; Provisional |
293-530 |
2.17e-05 |
|
transcription termination factor Rho; Provisional
The actual alignment was detected with superfamily member PRK12678:
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 50.67 E-value: 2.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 293 SARSGSGGRGQSPDGSGRSSNRRDRPRQPSPSQSSDSQVHSGVQVEGRRGQSSSANRRAGSSSGSGVQGASAGGLAADAS 372
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 373 RRSGARQGQASAQGRAGSQGQAQGRVGSSADRQGRRGVSESQASDSEghsdfsEGQAVGAHRQSGAGQRHEQRSSRGQHG 452
Cdd:PRK12678 136 AARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQ------AEAERGERGRREERGRDGDDRDRRDRR 209
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039765608 453 SRyyyeQEHSEEESDSQHQHGHQHEQQRGHQHQHEHEQPESGHRQQQSSGRGHQGAHQEQGRDSARSRGSNQGHSSSR 530
Cdd:PRK12678 210 EQ----GDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNER 283
|
|
| PRK12678 super family |
cl36163 |
transcription termination factor Rho; Provisional |
1085-1327 |
4.04e-05 |
|
transcription termination factor Rho; Provisional
The actual alignment was detected with superfamily member PRK12678:
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 49.90 E-value: 4.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1085 ISGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRVGSSADRQGRRGVSESQASDSEGHSDfsegqavgah 1164
Cdd:PRK12678 55 IKEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEA---------- 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1165 RQSGAGQRHEQRSSRGQHGSRYYYEQEHSEEESDSQHQHGHQHEQQRGHQHQHEHEQPESGHRQQQSSGRGHQGAHQEQG 1244
Cdd:PRK12678 125 AQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRD 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1245 RDSARSRGSNQGHSSSRHQADsprvsaRSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSQvhsgvqvEGRRGQSSSA 1324
Cdd:PRK12678 205 RRDRREQGDRREERGRRDGGD------RRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGR-------RGRRFRDRDR 271
|
...
gi 1039765608 1325 NRR 1327
Cdd:PRK12678 272 RGR 274
|
|
| PRK12678 super family |
cl36163 |
transcription termination factor Rho; Provisional |
1339-1573 |
1.11e-04 |
|
transcription termination factor Rho; Provisional
The actual alignment was detected with superfamily member PRK12678:
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 48.36 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1339 ASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRIGSSADRQGRRGVSESQASDSEGHSDFSEGQAVGAHRQSEAGQR 1418
Cdd:PRK12678 60 GGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARR 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1419 HEQRSSRGQhgsgyyyEQEHSEEESDSQHQHGHQHEQQRGTQHQHEHQQPESGHRQQQSSGRGHQGTHQEQGRDSARSRG 1498
Cdd:PRK12678 140 GAARKAGEG-------GEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQG 212
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039765608 1499 SNQGHSSSRHQADsprvsaRSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSQvhsgvqvEGRRRQSSSANRR 1573
Cdd:PRK12678 213 DRREERGRRDGGD------RRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGR-------RGRRFRDRDRRGR 274
|
|
| PRK12678 super family |
cl36163 |
transcription termination factor Rho; Provisional |
4082-4314 |
1.64e-04 |
|
transcription termination factor Rho; Provisional
The actual alignment was detected with superfamily member PRK12678:
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 47.98 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 4082 EGRRGQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRVGSSADRQGRRGVSESQASD 4161
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 4162 SeghsdfSEGQAVGAHRQSGAGQRHEQRSSRGQHGsgyyYEQEHSEEESDSQHQQGHQHEQQRGHQHQHQHQHEHEQPES 4241
Cdd:PRK12678 136 A------ARRGAARKAGEGGEQPATEARADAAERT----EEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR 205
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039765608 4242 GHRQQQSSGRGHQGAHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGQSPDGSGRSSNRRDRPRQ 4314
Cdd:PRK12678 206 RDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGD 278
|
|
| PRK12678 super family |
cl36163 |
transcription termination factor Rho; Provisional |
2591-2800 |
1.64e-04 |
|
transcription termination factor Rho; Provisional
The actual alignment was detected with superfamily member PRK12678:
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 47.98 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2591 QGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRVGSSADRQGRRGVSESQASDSeghsdfSEGQAVGAHRQSGAG 2670
Cdd:PRK12678 61 GGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAA------SAPEAAQARERRERG 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2671 QRHEQRSSRSQHGSGYYYEQEHSEEESDSQHQHSHQHEQQRGHQHQHQHQHEHEQPESGHRQQQSSGRGNQGAHQEQGRD 2750
Cdd:PRK12678 135 EAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDR 214
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2751 SARSRGSNQGHSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPR 2800
Cdd:PRK12678 215 REERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGR 264
|
|
| PRK12678 super family |
cl36163 |
transcription termination factor Rho; Provisional |
3414-3658 |
1.95e-04 |
|
transcription termination factor Rho; Provisional
The actual alignment was detected with superfamily member PRK12678:
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 47.59 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 3414 SEGQAVGAHRQSGAGQRHEQRSSRGQHGSGYYYEQEHSEEESDSQHQHGHQHEQQRGHQHQHQHQHEHEQPESGHRQQQS 3493
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 3494 SGRGhqGAHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSsdsqvhsg 3573
Cdd:PRK12678 136 AARR--GAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR-------- 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 3574 vqvEGRRGQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQaQGRVGSSADRQGRRGVSGSQ 3653
Cdd:PRK12678 206 ---RDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGR-RGRRFRDRDRRGRRGGDGGN 281
|
....*
gi 1039765608 3654 ASDSE 3658
Cdd:PRK12678 282 EREPE 286
|
|
| PRK12678 super family |
cl36163 |
transcription termination factor Rho; Provisional |
2406-2650 |
4.68e-04 |
|
transcription termination factor Rho; Provisional
The actual alignment was detected with superfamily member PRK12678:
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 46.44 E-value: 4.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2406 SEGQAVGAHRQSGAGQRHEQRSSRGQHGSGYYYEQEHSEEESDSQHQHGHQHEQQRGHQHQHQHQHEHEQPESGHRQQQS 2485
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2486 SGRGhqGAHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSsdsqvhsg 2565
Cdd:PRK12678 136 AARR--GAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR-------- 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2566 vqvEGRRGQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQaQGRVGSSADRQGRRGVSESQ 2645
Cdd:PRK12678 206 ---RDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGR-RGRRFRDRDRRGRRGGDGGN 281
|
....*
gi 1039765608 2646 ASDSE 2650
Cdd:PRK12678 282 EREPE 286
|
|
| PRK12678 super family |
cl36163 |
transcription termination factor Rho; Provisional |
671-915 |
6.74e-04 |
|
transcription termination factor Rho; Provisional
The actual alignment was detected with superfamily member PRK12678:
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 46.05 E-value: 6.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 671 SEGQAVGAHRQSGAGQRHEQRSSRGQHGSGYYYEQEHSEEESDSQHQHGHQHEQQRGHQHQHQHQHEHEQPESGHRQQQS 750
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 751 SGRGhqGAHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSsdsqvhsg 830
Cdd:PRK12678 136 AARR--GAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR-------- 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 831 vqvEGRRGQSSSANRRAGSSSGSGVQGTSAGGLAADASRRSGARQGQASAQGRAGSQGQaQGRVGSSADRQGRRGVSESQ 910
Cdd:PRK12678 206 ---RDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGR-RGRRFRDRDRRGRRGGDGGN 281
|
....*
gi 1039765608 911 ASDSE 915
Cdd:PRK12678 282 EREPE 286
|
|
| PRK12678 super family |
cl36163 |
transcription termination factor Rho; Provisional |
861-1065 |
7.92e-04 |
|
transcription termination factor Rho; Provisional
The actual alignment was detected with superfamily member PRK12678:
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 45.67 E-value: 7.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 861 GGLAADASRRSGARQGQASAQGRAGSQGQAQGRVGSSADRQGRRGVSESQASDSEGHSDFSEGQAVGAHRQSGAGQRHEQ 940
Cdd:PRK12678 60 GGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARR 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 941 RSSRGQHGSGYYYEQEHSEEESDSQHQHGHQHEQQRGHQHQHQHQHEHEQPESGHRQQQSSGRGNQGAHQKQGRDSARSR 1020
Cdd:PRK12678 140 GAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERG 219
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1039765608 1021 GSNQGHSSSRHQADSPRVSARSGS*GR*QSPDASGRNSTKRDRPR 1065
Cdd:PRK12678 220 RRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGR 264
|
|
| PRK12678 super family |
cl36163 |
transcription termination factor Rho; Provisional |
3664-3908 |
1.66e-03 |
|
transcription termination factor Rho; Provisional
The actual alignment was detected with superfamily member PRK12678:
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 44.51 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 3664 SEGQAVGAHRQSGAGQRHEQRSSRGQHGSGYYYEQEHSEEESDSQHQHGHQHEQQRGHQHQHQHQHEHEQPESGHRQQQF 3743
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 3744 SGRGhqGAHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSsdsqvhsg 3823
Cdd:PRK12678 136 AARR--GAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR-------- 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 3824 vqvEGRRGQSSSANRRAGSSSSSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQaQGRVGSSADRQGRRGVSESQ 3903
Cdd:PRK12678 206 ---RDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGR-RGRRFRDRDRRGRRGGDGGN 281
|
....*
gi 1039765608 3904 ASDSE 3908
Cdd:PRK12678 282 EREPE 286
|
|
| PRK12678 super family |
cl36163 |
transcription termination factor Rho; Provisional |
1901-2145 |
1.66e-03 |
|
transcription termination factor Rho; Provisional
The actual alignment was detected with superfamily member PRK12678:
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 44.51 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1901 SEGQAVGAHRQSGAGQRHEQRSSRGQHGSGYYYEQEHSEEESDSQHQHGHQHEQQRGHQHQHQHQHEHEQPESGHRQQQF 1980
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1981 SGRGhqGAHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSsdsqvhsg 2060
Cdd:PRK12678 136 AARR--GAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR-------- 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2061 vqvEGRRGQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQaQGRVGSSADRQGRRGVSESQ 2140
Cdd:PRK12678 206 ---RDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGR-RGRRFRDRDRRGRRGGDGGN 281
|
....*
gi 1039765608 2141 ASDSE 2145
Cdd:PRK12678 282 EREPE 286
|
|
| PRK12678 super family |
cl36163 |
transcription termination factor Rho; Provisional |
1509-1677 |
2.49e-03 |
|
transcription termination factor Rho; Provisional
The actual alignment was detected with superfamily member PRK12678:
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 44.12 E-value: 2.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1509 QADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSQvHSGVQVEGRRRQSSSANRRAGSSSGSGVQGASAG 1588
Cdd:PRK12678 77 ARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASA-PEAAQARERRERGEAARRGAARKAGEGGEQPATE 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1589 GLAADASRRSGARQGQASAQGRAGSQGQAQGRvgSSADRQGRRGVSESQASDSEGHSDF----SEGQAVGAHRQSGAGQR 1664
Cdd:PRK12678 156 ARADAAERTEEEERDERRRRGDREDRQAEAER--GERGRREERGRDGDDRDRRDRREQGdrreERGRRDGGDRRGRRRRR 233
|
170
....*....|...
gi 1039765608 1665 HEQRSSRGQHGSG 1677
Cdd:PRK12678 234 DRRDARGDDNRED 246
|
|
| PRK12678 super family |
cl36163 |
transcription termination factor Rho; Provisional |
2243-2449 |
2.68e-03 |
|
transcription termination factor Rho; Provisional
The actual alignment was detected with superfamily member PRK12678:
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 43.74 E-value: 2.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2243 AHQEQGRDSARSRGSnqghSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSQvHSGVQVEGRR 2322
Cdd:PRK12678 57 EARGGGAAAAAATPA----APAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASA-PEAAQARERR 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2323 GQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRvgSSADRQGRRGVSESQASDSEGH 2402
Cdd:PRK12678 132 ERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAER--GERGRREERGRDGDDRDRRDRR 209
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1039765608 2403 SDF----SEGQAVGAHRQSGAGQRHEQRSSRGQHGSGYYYEQEHSEEESDS 2449
Cdd:PRK12678 210 EQGdrreERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGG 260
|
|
| PRK12678 super family |
cl36163 |
transcription termination factor Rho; Provisional |
2774-3020 |
4.24e-03 |
|
transcription termination factor Rho; Provisional
The actual alignment was detected with superfamily member PRK12678:
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 43.35 E-value: 4.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2774 SARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSHVHSGVQVEGRRGQSSSANRRAGSSSGSGVQGASAGGLAADAS 2853
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2854 RRSGARQGQASAQGRAGSQGQAQGRVGSSADRQGRRGVSESQASDSEghsdfsEGQAVGAHRQSGAGQRHEQRSSRGQHG 2933
Cdd:PRK12678 136 AARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQ------AEAERGERGRREERGRDGDDRDRRDRR 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2934 sgfypvyyyyEQEHSEEESDSQHQHGHQHEQQRGHQHQHQHQHEHEQPESGHRQQQSSGRGHQGahqEQGRDSARSRGSN 3013
Cdd:PRK12678 210 ----------EQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRG---RRFRDRDRRGRRG 276
|
....*..
gi 1039765608 3014 QGHSSSR 3020
Cdd:PRK12678 277 GDGGNER 283
|
|
| PRK12678 super family |
cl36163 |
transcription termination factor Rho; Provisional |
1738-1944 |
9.57e-03 |
|
transcription termination factor Rho; Provisional
The actual alignment was detected with superfamily member PRK12678:
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 42.20 E-value: 9.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1738 AHQEQGRDSARSRGSnqghSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSQvHSGVQVEGRR 1817
Cdd:PRK12678 57 EARGGGAAAAAATPA----APAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASA-PEAAQARERR 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1818 GQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGALQGQASAQGRAGSQGQAQGRvgSSADRQGRRGVSGSQASDSEGH 1897
Cdd:PRK12678 132 ERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAER--GERGRREERGRDGDDRDRRDRR 209
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1039765608 1898 SDF----SEGQAVGAHRQSGAGQRHEQRSSRGQHGSGYYYEQEHSEEESDS 1944
Cdd:PRK12678 210 EQGdrreERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGG 260
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| S-100 |
cd00213 |
S-100: S-100 domain, which represents the largest family within the superfamily of proteins ... |
2-74 |
2.21e-24 |
|
S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents the interaction site of S100 proteins with their target proteins. There is experimental evidence showing that many S100 proteins have multiple binding partners with diverse mode of interaction with different targets. In addition to S100 proteins (such as S100A1,-3,-4,-6,-7,-10,-11,and -13), this group includes the ''fused'' gene family, a group of calcium binding S100-related proteins. The ''fused'' gene family includes multifunctional epidermal differentiation proteins - profilaggrin, trichohyalin, repetin, hornerin, and cornulin; functionally these proteins are associated with keratin intermediate filaments and partially crosslinked to the cell envelope. These ''fused'' gene proteins contain N-terminal sequence with two Ca-binding EF-hands motif, which may be associated with calcium signaling in epidermal cells and autoprocessing in a calcium-dependent manner. In contrast to S100 proteins, "fused" gene family proteins contain an extraordinary high number of almost perfect peptide repeats with regular array of polar and charged residues similar to many known cell envelope proteins.
Pssm-ID: 238131 [Multi-domain] Cd Length: 88 Bit Score: 99.87 E-value: 2.21e-24
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039765608 2 SALLESITSMIEIFQQYSTSDKEEETLSKEELKELLEGQLQAVLKNPDDQDIAEVFMQMLDVDHDDKLDFAEY 74
Cdd:cd00213 1 SELEKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEF 73
|
|
| S_100 |
pfam01023 |
S-100/ICaBP type calcium binding domain; The S-100 domain is a subfamily of the EF-hand ... |
4-48 |
9.41e-12 |
|
S-100/ICaBP type calcium binding domain; The S-100 domain is a subfamily of the EF-hand calcium binding proteins.
Pssm-ID: 460028 Cd Length: 45 Bit Score: 62.45 E-value: 9.41e-12
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 1039765608 4 LLESITSMIEIFQQYSTSDKEEETLSKEELKELLEGQLQAVLKNP 48
Cdd:pfam01023 1 LERAIETIIDVFHKYAGKEGDKDTLSKKELKELLEKELPNFLKNQ 45
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
293-530 |
2.17e-05 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 50.67 E-value: 2.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 293 SARSGSGGRGQSPDGSGRSSNRRDRPRQPSPSQSSDSQVHSGVQVEGRRGQSSSANRRAGSSSGSGVQGASAGGLAADAS 372
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 373 RRSGARQGQASAQGRAGSQGQAQGRVGSSADRQGRRGVSESQASDSEghsdfsEGQAVGAHRQSGAGQRHEQRSSRGQHG 452
Cdd:PRK12678 136 AARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQ------AEAERGERGRREERGRDGDDRDRRDRR 209
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039765608 453 SRyyyeQEHSEEESDSQHQHGHQHEQQRGHQHQHEHEQPESGHRQQQSSGRGHQGAHQEQGRDSARSRGSNQGHSSSR 530
Cdd:PRK12678 210 EQ----GDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNER 283
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
1085-1327 |
4.04e-05 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 49.90 E-value: 4.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1085 ISGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRVGSSADRQGRRGVSESQASDSEGHSDfsegqavgah 1164
Cdd:PRK12678 55 IKEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEA---------- 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1165 RQSGAGQRHEQRSSRGQHGSRYYYEQEHSEEESDSQHQHGHQHEQQRGHQHQHEHEQPESGHRQQQSSGRGHQGAHQEQG 1244
Cdd:PRK12678 125 AQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRD 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1245 RDSARSRGSNQGHSSSRHQADsprvsaRSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSQvhsgvqvEGRRGQSSSA 1324
Cdd:PRK12678 205 RRDRREQGDRREERGRRDGGD------RRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGR-------RGRRFRDRDR 271
|
...
gi 1039765608 1325 NRR 1327
Cdd:PRK12678 272 RGR 274
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
1339-1573 |
1.11e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 48.36 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1339 ASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRIGSSADRQGRRGVSESQASDSEGHSDFSEGQAVGAHRQSEAGQR 1418
Cdd:PRK12678 60 GGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARR 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1419 HEQRSSRGQhgsgyyyEQEHSEEESDSQHQHGHQHEQQRGTQHQHEHQQPESGHRQQQSSGRGHQGTHQEQGRDSARSRG 1498
Cdd:PRK12678 140 GAARKAGEG-------GEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQG 212
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039765608 1499 SNQGHSSSRHQADsprvsaRSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSQvhsgvqvEGRRRQSSSANRR 1573
Cdd:PRK12678 213 DRREERGRRDGGD------RRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGR-------RGRRFRDRDRRGR 274
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
4082-4314 |
1.64e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 47.98 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 4082 EGRRGQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRVGSSADRQGRRGVSESQASD 4161
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 4162 SeghsdfSEGQAVGAHRQSGAGQRHEQRSSRGQHGsgyyYEQEHSEEESDSQHQQGHQHEQQRGHQHQHQHQHEHEQPES 4241
Cdd:PRK12678 136 A------ARRGAARKAGEGGEQPATEARADAAERT----EEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR 205
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039765608 4242 GHRQQQSSGRGHQGAHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGQSPDGSGRSSNRRDRPRQ 4314
Cdd:PRK12678 206 RDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGD 278
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
2591-2800 |
1.64e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 47.98 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2591 QGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRVGSSADRQGRRGVSESQASDSeghsdfSEGQAVGAHRQSGAG 2670
Cdd:PRK12678 61 GGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAA------SAPEAAQARERRERG 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2671 QRHEQRSSRSQHGSGYYYEQEHSEEESDSQHQHSHQHEQQRGHQHQHQHQHEHEQPESGHRQQQSSGRGNQGAHQEQGRD 2750
Cdd:PRK12678 135 EAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDR 214
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2751 SARSRGSNQGHSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPR 2800
Cdd:PRK12678 215 REERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGR 264
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
3414-3658 |
1.95e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 47.59 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 3414 SEGQAVGAHRQSGAGQRHEQRSSRGQHGSGYYYEQEHSEEESDSQHQHGHQHEQQRGHQHQHQHQHEHEQPESGHRQQQS 3493
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 3494 SGRGhqGAHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSsdsqvhsg 3573
Cdd:PRK12678 136 AARR--GAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR-------- 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 3574 vqvEGRRGQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQaQGRVGSSADRQGRRGVSGSQ 3653
Cdd:PRK12678 206 ---RDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGR-RGRRFRDRDRRGRRGGDGGN 281
|
....*
gi 1039765608 3654 ASDSE 3658
Cdd:PRK12678 282 EREPE 286
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
2406-2650 |
4.68e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 46.44 E-value: 4.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2406 SEGQAVGAHRQSGAGQRHEQRSSRGQHGSGYYYEQEHSEEESDSQHQHGHQHEQQRGHQHQHQHQHEHEQPESGHRQQQS 2485
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2486 SGRGhqGAHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSsdsqvhsg 2565
Cdd:PRK12678 136 AARR--GAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR-------- 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2566 vqvEGRRGQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQaQGRVGSSADRQGRRGVSESQ 2645
Cdd:PRK12678 206 ---RDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGR-RGRRFRDRDRRGRRGGDGGN 281
|
....*
gi 1039765608 2646 ASDSE 2650
Cdd:PRK12678 282 EREPE 286
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
671-915 |
6.74e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 46.05 E-value: 6.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 671 SEGQAVGAHRQSGAGQRHEQRSSRGQHGSGYYYEQEHSEEESDSQHQHGHQHEQQRGHQHQHQHQHEHEQPESGHRQQQS 750
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 751 SGRGhqGAHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSsdsqvhsg 830
Cdd:PRK12678 136 AARR--GAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR-------- 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 831 vqvEGRRGQSSSANRRAGSSSGSGVQGTSAGGLAADASRRSGARQGQASAQGRAGSQGQaQGRVGSSADRQGRRGVSESQ 910
Cdd:PRK12678 206 ---RDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGR-RGRRFRDRDRRGRRGGDGGN 281
|
....*
gi 1039765608 911 ASDSE 915
Cdd:PRK12678 282 EREPE 286
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
861-1065 |
7.92e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 45.67 E-value: 7.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 861 GGLAADASRRSGARQGQASAQGRAGSQGQAQGRVGSSADRQGRRGVSESQASDSEGHSDFSEGQAVGAHRQSGAGQRHEQ 940
Cdd:PRK12678 60 GGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARR 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 941 RSSRGQHGSGYYYEQEHSEEESDSQHQHGHQHEQQRGHQHQHQHQHEHEQPESGHRQQQSSGRGNQGAHQKQGRDSARSR 1020
Cdd:PRK12678 140 GAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERG 219
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1039765608 1021 GSNQGHSSSRHQADSPRVSARSGS*GR*QSPDASGRNSTKRDRPR 1065
Cdd:PRK12678 220 RRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGR 264
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
3664-3908 |
1.66e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 44.51 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 3664 SEGQAVGAHRQSGAGQRHEQRSSRGQHGSGYYYEQEHSEEESDSQHQHGHQHEQQRGHQHQHQHQHEHEQPESGHRQQQF 3743
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 3744 SGRGhqGAHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSsdsqvhsg 3823
Cdd:PRK12678 136 AARR--GAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR-------- 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 3824 vqvEGRRGQSSSANRRAGSSSSSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQaQGRVGSSADRQGRRGVSESQ 3903
Cdd:PRK12678 206 ---RDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGR-RGRRFRDRDRRGRRGGDGGN 281
|
....*
gi 1039765608 3904 ASDSE 3908
Cdd:PRK12678 282 EREPE 286
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
1901-2145 |
1.66e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 44.51 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1901 SEGQAVGAHRQSGAGQRHEQRSSRGQHGSGYYYEQEHSEEESDSQHQHGHQHEQQRGHQHQHQHQHEHEQPESGHRQQQF 1980
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1981 SGRGhqGAHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSsdsqvhsg 2060
Cdd:PRK12678 136 AARR--GAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR-------- 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2061 vqvEGRRGQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQaQGRVGSSADRQGRRGVSESQ 2140
Cdd:PRK12678 206 ---RDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGR-RGRRFRDRDRRGRRGGDGGN 281
|
....*
gi 1039765608 2141 ASDSE 2145
Cdd:PRK12678 282 EREPE 286
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
1509-1677 |
2.49e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 44.12 E-value: 2.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1509 QADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSQvHSGVQVEGRRRQSSSANRRAGSSSGSGVQGASAG 1588
Cdd:PRK12678 77 ARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASA-PEAAQARERRERGEAARRGAARKAGEGGEQPATE 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1589 GLAADASRRSGARQGQASAQGRAGSQGQAQGRvgSSADRQGRRGVSESQASDSEGHSDF----SEGQAVGAHRQSGAGQR 1664
Cdd:PRK12678 156 ARADAAERTEEEERDERRRRGDREDRQAEAER--GERGRREERGRDGDDRDRRDRREQGdrreERGRRDGGDRRGRRRRR 233
|
170
....*....|...
gi 1039765608 1665 HEQRSSRGQHGSG 1677
Cdd:PRK12678 234 DRRDARGDDNRED 246
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
2243-2449 |
2.68e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 43.74 E-value: 2.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2243 AHQEQGRDSARSRGSnqghSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSQvHSGVQVEGRR 2322
Cdd:PRK12678 57 EARGGGAAAAAATPA----APAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASA-PEAAQARERR 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2323 GQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRvgSSADRQGRRGVSESQASDSEGH 2402
Cdd:PRK12678 132 ERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAER--GERGRREERGRDGDDRDRRDRR 209
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1039765608 2403 SDF----SEGQAVGAHRQSGAGQRHEQRSSRGQHGSGYYYEQEHSEEESDS 2449
Cdd:PRK12678 210 EQGdrreERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGG 260
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
2774-3020 |
4.24e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 43.35 E-value: 4.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2774 SARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSHVHSGVQVEGRRGQSSSANRRAGSSSGSGVQGASAGGLAADAS 2853
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2854 RRSGARQGQASAQGRAGSQGQAQGRVGSSADRQGRRGVSESQASDSEghsdfsEGQAVGAHRQSGAGQRHEQRSSRGQHG 2933
Cdd:PRK12678 136 AARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQ------AEAERGERGRREERGRDGDDRDRRDRR 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2934 sgfypvyyyyEQEHSEEESDSQHQHGHQHEQQRGHQHQHQHQHEHEQPESGHRQQQSSGRGHQGahqEQGRDSARSRGSN 3013
Cdd:PRK12678 210 ----------EQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRG---RRFRDRDRRGRRG 276
|
....*..
gi 1039765608 3014 QGHSSSR 3020
Cdd:PRK12678 277 GDGGNER 283
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
1227-1444 |
6.37e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 42.58 E-value: 6.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1227 RQQQSSGRGHQGAHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDS 1306
Cdd:PRK12678 79 RAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARA 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1307 qvhsgvQVEGRRGQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRIGSSADRQGRRG 1386
Cdd:PRK12678 159 ------DAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRR 232
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1039765608 1387 VSESQASDSEGHSD-FSEGQAVGAHRQSEAGQRHEQRSSRGQHGSGYYYEQEHSEEESD 1444
Cdd:PRK12678 233 RDRRDARGDDNREDrGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNEREPELREDD 291
|
|
| ser_rich_anae_1 |
NF033849 |
serine-rich protein; This serine-rich protein belongs to a family with large size (over 1000 ... |
1341-1660 |
8.71e-03 |
|
serine-rich protein; This serine-rich protein belongs to a family with large size (over 1000 amino acids), which a highly serine-rich central region that averages over 300 aa in length. Species encoding members of this family of proteins tend to be anaerobic bacteria, including Gram-positive bacteria of the human gut microbiome and Chloroflexi from marine sediments.
Pssm-ID: 468206 [Multi-domain] Cd Length: 1122 Bit Score: 42.30 E-value: 8.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1341 AGGLAADASRRSGARQGQASAQGRAGSQGQaqgrigssadrqgrrgvsesqaSDSEGHSDfSEGQAVGAHRQSEAGQRHE 1420
Cdd:NF033849 232 AANLGQSAGTGYGESVGHSTSQGQSHSVGT----------------------SESHSVGT-SQSQSHTTGHGSTRGWSHT 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1421 QRSSRGqHGSGYYYEQEHSEEESDSQHQHGHQHEQQRGTQHQHEHQQPESGHRQQQSSGrGHQGTHQEQGRDSARSRGSN 1500
Cdd:NF033849 289 QSTSES-ESTGQSSSVGTSESQSHGTTEGTSTTDSSSHSQSSSYNVSSGTGVSSSHSDG-TSQSTSISHSESSSESTGTS 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1501 QGHSSSRHQADSPRVSARSG---SGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSQVHSGVQVEGRRRQSSSANRRAGSS 1577
Cdd:NF033849 367 VGHSTSSSVSSSESSSRSSSsgvSGGFSGGIAGGGVTSEGLGASQGGSEGWGSGDSVQSVSQSYGSSSSTGTSSGHSDSS 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1578 SGSGVQGASAG-GLAADASRRSGARQGQASAQGRA----GSQGQAQGRVGSSADRQGrRGVSESQaSDSEGHSDfSEGQA 1652
Cdd:NF033849 447 SHSTSSGQADSvSQGTSWSEGTGTSQGQSVGTSESwstsQSETDSVGDSTGTSESVS-QGDGRST-GRSESQGT-SLGTS 523
|
....*...
gi 1039765608 1653 VGAHRQSG 1660
Cdd:NF033849 524 GGRTSGAG 531
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
1738-1944 |
9.57e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 42.20 E-value: 9.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1738 AHQEQGRDSARSRGSnqghSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSQvHSGVQVEGRR 1817
Cdd:PRK12678 57 EARGGGAAAAAATPA----APAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASA-PEAAQARERR 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1818 GQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGALQGQASAQGRAGSQGQAQGRvgSSADRQGRRGVSGSQASDSEGH 1897
Cdd:PRK12678 132 ERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAER--GERGRREERGRDGDDRDRRDRR 209
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1039765608 1898 SDF----SEGQAVGAHRQSGAGQRHEQRSSRGQHGSGYYYEQEHSEEESDS 1944
Cdd:PRK12678 210 EQGdrreERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGG 260
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| S-100 |
cd00213 |
S-100: S-100 domain, which represents the largest family within the superfamily of proteins ... |
2-74 |
2.21e-24 |
|
S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents the interaction site of S100 proteins with their target proteins. There is experimental evidence showing that many S100 proteins have multiple binding partners with diverse mode of interaction with different targets. In addition to S100 proteins (such as S100A1,-3,-4,-6,-7,-10,-11,and -13), this group includes the ''fused'' gene family, a group of calcium binding S100-related proteins. The ''fused'' gene family includes multifunctional epidermal differentiation proteins - profilaggrin, trichohyalin, repetin, hornerin, and cornulin; functionally these proteins are associated with keratin intermediate filaments and partially crosslinked to the cell envelope. These ''fused'' gene proteins contain N-terminal sequence with two Ca-binding EF-hands motif, which may be associated with calcium signaling in epidermal cells and autoprocessing in a calcium-dependent manner. In contrast to S100 proteins, "fused" gene family proteins contain an extraordinary high number of almost perfect peptide repeats with regular array of polar and charged residues similar to many known cell envelope proteins.
Pssm-ID: 238131 [Multi-domain] Cd Length: 88 Bit Score: 99.87 E-value: 2.21e-24
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039765608 2 SALLESITSMIEIFQQYSTSDKEEETLSKEELKELLEGQLQAVLKNPDDQDIAEVFMQMLDVDHDDKLDFAEY 74
Cdd:cd00213 1 SELEKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEF 73
|
|
| calgranulins |
cd05030 |
Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 ... |
2-74 |
3.60e-12 |
|
Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Pssm-ID: 240156 [Multi-domain] Cd Length: 88 Bit Score: 65.06 E-value: 3.60e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039765608 2 SALLESITSMIEIFQQYSTSDKEEETLSKEELKELLEGQLQAVLKNPDDQDIAEVFMQMLDVDHDDKLDFAEY 74
Cdd:cd05030 1 TELEKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEF 73
|
|
| S_100 |
pfam01023 |
S-100/ICaBP type calcium binding domain; The S-100 domain is a subfamily of the EF-hand ... |
4-48 |
9.41e-12 |
|
S-100/ICaBP type calcium binding domain; The S-100 domain is a subfamily of the EF-hand calcium binding proteins.
Pssm-ID: 460028 Cd Length: 45 Bit Score: 62.45 E-value: 9.41e-12
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 1039765608 4 LLESITSMIEIFQQYSTSDKEEETLSKEELKELLEGQLQAVLKNP 48
Cdd:pfam01023 1 LERAIETIIDVFHKYAGKEGDKDTLSKKELKELLEKELPNFLKNQ 45
|
|
| S-100A10_like |
cd05031 |
S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of ... |
2-74 |
3.04e-10 |
|
S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Pssm-ID: 240157 [Multi-domain] Cd Length: 94 Bit Score: 59.74 E-value: 3.04e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039765608 2 SALLESITSMIEIFQQYSTSDKEEETLSKEELKELLEGQLQAVLKNPDDQDIAEVFMQMLDVDHDDKLDFAEY 74
Cdd:cd05031 1 SELEHAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEF 73
|
|
| S-100A1 |
cd05025 |
S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding ... |
2-74 |
2.31e-09 |
|
S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Pssm-ID: 240152 [Multi-domain] Cd Length: 92 Bit Score: 57.21 E-value: 2.31e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039765608 2 SALLESITSMIEIFQQYSTSDKEEETLSKEELKELLEGQLQAVLKNPDDQDIAEVFMQMLDVDHDDKLDFAEY 74
Cdd:cd05025 2 SELETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEF 74
|
|
| S-100B |
cd05027 |
S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein ... |
2-74 |
4.36e-09 |
|
S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B inhibits the phosphorylation of multiple kinase substrates including the Alzheimer protein tau and neuromodulin (GAP-43) through a calcium-sensitive interaction with the protein substrates.
Pssm-ID: 240154 [Multi-domain] Cd Length: 88 Bit Score: 56.40 E-value: 4.36e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039765608 2 SALLESITSMIEIFQQYSTSDKEEETLSKEELKELLEGQLQAVLKNPDDQDIAEVFMQMLDVDHDDKLDFAEY 74
Cdd:cd05027 1 SELEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEF 73
|
|
| S-100Z |
cd05026 |
S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain ... |
1-74 |
7.44e-09 |
|
S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfaces on the protein. In comparison with their normal tissue counterparts, S100Z gene expression appears to be deregulated in some tumor tissues.
Pssm-ID: 240153 [Multi-domain] Cd Length: 93 Bit Score: 55.65 E-value: 7.44e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039765608 1 MSALLE-SITSMIEIFQQYSTSDKEEETLSKEELKELLEGQLQAVLKNPDDQDIAEVFMQMLDVDHDDKLDFAEY 74
Cdd:cd05026 1 MPTQLEgAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEF 75
|
|
| S-100A6 |
cd05029 |
S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 ... |
2-74 |
2.44e-07 |
|
S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interaction with target proteins. Several such proteins have been identified: glyceraldehyde-3-phosphate dehydrogenase , annexins 2, 6 and 11 and Calcyclin-Binding Protein (CacyBP).
Pssm-ID: 240155 [Multi-domain] Cd Length: 88 Bit Score: 51.38 E-value: 2.44e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039765608 2 SALLESITSMIEIFQQYSTSDKEEETLSKEELKELLEGQLqAVLKNPDDQDIAEVfMQMLDVDHDDKLDFAEY 74
Cdd:cd05029 3 SPLDQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKEL-TIGSKLQDAEIAKL-MEDLDRNKDQEVNFQEY 73
|
|
| S-100A11 |
cd05023 |
S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the ... |
7-74 |
3.97e-07 |
|
S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S100A11 is homodimer, which is able to form a heterodimer with S100B through subunit exchange. Ca2+ binding to S100A11 results in a conformational change in the protein, exposing a hydrophobic surface that interacts with target proteins. In addition to binding to annexin A1 and A6 S100A11 also interacts with actin and transglutaminase.
Pssm-ID: 240150 [Multi-domain] Cd Length: 89 Bit Score: 50.54 E-value: 3.97e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039765608 7 SITSMIEIFQQYSTSDKEEETLSKEELKELLEGQLQAVLKNPDDQDIAEVFMQMLDVDHDDKLDFAEY 74
Cdd:cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEF 74
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
293-530 |
2.17e-05 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 50.67 E-value: 2.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 293 SARSGSGGRGQSPDGSGRSSNRRDRPRQPSPSQSSDSQVHSGVQVEGRRGQSSSANRRAGSSSGSGVQGASAGGLAADAS 372
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 373 RRSGARQGQASAQGRAGSQGQAQGRVGSSADRQGRRGVSESQASDSEghsdfsEGQAVGAHRQSGAGQRHEQRSSRGQHG 452
Cdd:PRK12678 136 AARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQ------AEAERGERGRREERGRDGDDRDRRDRR 209
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039765608 453 SRyyyeQEHSEEESDSQHQHGHQHEQQRGHQHQHEHEQPESGHRQQQSSGRGHQGAHQEQGRDSARSRGSNQGHSSSR 530
Cdd:PRK12678 210 EQ----GDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNER 283
|
|
| S-100A13 |
cd05022 |
S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding ... |
2-74 |
3.22e-05 |
|
S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu(II)-binding sites are unique among the S100 proteins, which are reported to bind Cu(II) or Zn(II) ions in addition to Ca(II) ions. In addition, the three-dimensional structure of S100A13 differs significantly from those of other S100 proteins; the hydrophobic pocket that largely contributes to protein-protein interactions in other S100 proteins is absent in S100A13. The structure of S100A13 contains a large patch of negatively charged residues flanked by dense cationic clusters, formed mostly from positively charged residues from the C-terminal end, which plays major role in binding FGF-1.
Pssm-ID: 240149 [Multi-domain] Cd Length: 89 Bit Score: 45.41 E-value: 3.22e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039765608 2 SALLESITSMIEIFQQYSTSDKEEeTLSKEELKELLEGQLQAVLKnpdDQDIAEVFMQMLDVDHDDKLDFAEY 74
Cdd:cd05022 1 TELEKAIETLVSNFHKASVKGGKE-SLTASEFQELLTQQLPHLLK---DVEGLEEKMKNLDVNQDSKLSFEEF 69
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
1085-1327 |
4.04e-05 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 49.90 E-value: 4.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1085 ISGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRVGSSADRQGRRGVSESQASDSEGHSDfsegqavgah 1164
Cdd:PRK12678 55 IKEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEA---------- 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1165 RQSGAGQRHEQRSSRGQHGSRYYYEQEHSEEESDSQHQHGHQHEQQRGHQHQHEHEQPESGHRQQQSSGRGHQGAHQEQG 1244
Cdd:PRK12678 125 AQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRD 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1245 RDSARSRGSNQGHSSSRHQADsprvsaRSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSQvhsgvqvEGRRGQSSSA 1324
Cdd:PRK12678 205 RRDRREQGDRREERGRRDGGD------RRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGR-------RGRRFRDRDR 271
|
...
gi 1039765608 1325 NRR 1327
Cdd:PRK12678 272 RGR 274
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
338-565 |
6.49e-05 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 49.13 E-value: 6.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 338 EGRRGQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRVGSSADRQGRRGVSESQASD 417
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 418 SeghsdfSEGQAVGAHRQSGAGQRHEQRSSRGQHGSRYYYEQEHSEEESDSQHQHGHQHEQQRGHQHQHEHEQPESGHRQ 497
Cdd:PRK12678 136 A------ARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRR 209
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039765608 498 QQSSGRGHQGAHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGqspdasGRSSNRRDRPR 565
Cdd:PRK12678 210 EQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGG------RRGRRFRDRDR 271
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
360-596 |
6.60e-05 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 49.13 E-value: 6.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 360 QGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRVGSSADRQGRRGVSESQASDSEGHSDfsegqavgahRQSGAG 439
Cdd:PRK12678 61 GGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEA----------AQARER 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 440 QRHEQRSSRGQHGSRYYYEQEHSEEESDSQHQHGHQHEQQRGHQHQHEHEQPESGHRQQQSSGRGHQGAHQEQGRDSARS 519
Cdd:PRK12678 131 RERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRRE 210
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039765608 520 RGSNQGHSSSRHQADsprvsaRSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSQvhsgvqvEGRRGQSSSANRR 596
Cdd:PRK12678 211 QGDRREERGRRDGGD------RRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGR-------RGRRFRDRDRRGR 274
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
1339-1573 |
1.11e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 48.36 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1339 ASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRIGSSADRQGRRGVSESQASDSEGHSDFSEGQAVGAHRQSEAGQR 1418
Cdd:PRK12678 60 GGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARR 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1419 HEQRSSRGQhgsgyyyEQEHSEEESDSQHQHGHQHEQQRGTQHQHEHQQPESGHRQQQSSGRGHQGTHQEQGRDSARSRG 1498
Cdd:PRK12678 140 GAARKAGEG-------GEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQG 212
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039765608 1499 SNQGHSSSRHQADsprvsaRSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSQvhsgvqvEGRRRQSSSANRR 1573
Cdd:PRK12678 213 DRREERGRRDGGD------RRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGR-------RGRRFRDRDRRGR 274
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
1315-1542 |
1.23e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 48.36 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1315 EGRRGQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRIGSSADRQGRRGVSESQASD 1394
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1395 SeghsdfSEGQAVGAHRQSEAGQRHEQRSSRGQHGSGYYYEQEHSEEESDSQHQHGHQHEQQRGTQHQHEHQQPESGHRQ 1474
Cdd:PRK12678 136 A------ARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRR 209
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039765608 1475 QQSSGRGHQGTHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGqspdasGRSSNRRDRPR 1542
Cdd:PRK12678 210 EQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGG------RRGRRFRDRDR 271
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
4082-4314 |
1.64e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 47.98 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 4082 EGRRGQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRVGSSADRQGRRGVSESQASD 4161
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 4162 SeghsdfSEGQAVGAHRQSGAGQRHEQRSSRGQHGsgyyYEQEHSEEESDSQHQQGHQHEQQRGHQHQHQHQHEHEQPES 4241
Cdd:PRK12678 136 A------ARRGAARKAGEGGEQPATEARADAAERT----EEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR 205
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039765608 4242 GHRQQQSSGRGHQGAHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGQSPDGSGRSSNRRDRPRQ 4314
Cdd:PRK12678 206 RDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGD 278
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
2591-2800 |
1.64e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 47.98 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2591 QGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRVGSSADRQGRRGVSESQASDSeghsdfSEGQAVGAHRQSGAG 2670
Cdd:PRK12678 61 GGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAA------SAPEAAQARERRERG 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2671 QRHEQRSSRSQHGSGYYYEQEHSEEESDSQHQHSHQHEQQRGHQHQHQHQHEHEQPESGHRQQQSSGRGNQGAHQEQGRD 2750
Cdd:PRK12678 135 EAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDR 214
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2751 SARSRGSNQGHSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPR 2800
Cdd:PRK12678 215 REERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGR 264
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
3414-3658 |
1.95e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 47.59 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 3414 SEGQAVGAHRQSGAGQRHEQRSSRGQHGSGYYYEQEHSEEESDSQHQHGHQHEQQRGHQHQHQHQHEHEQPESGHRQQQS 3493
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 3494 SGRGhqGAHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSsdsqvhsg 3573
Cdd:PRK12678 136 AARR--GAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR-------- 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 3574 vqvEGRRGQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQaQGRVGSSADRQGRRGVSGSQ 3653
Cdd:PRK12678 206 ---RDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGR-RGRRFRDRDRRGRRGGDGGN 281
|
....*
gi 1039765608 3654 ASDSE 3658
Cdd:PRK12678 282 EREPE 286
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
1038-1261 |
2.65e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 47.21 E-value: 2.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1038 VSARSGS*GR*QSPDASGRNSTKRDRPRQPSPSQSSDSHVHSGKAGSISGSGVQGASAGGLAADASRRSGARQGQASAQG 1117
Cdd:PRK12678 64 AAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAAR 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1118 RAGSQGQAQGRVGSSADRQGRRGVSESQASDSEGHSDFSEGQAVGAHRQSGAGQRHEQRSSRGQHGSRyyyeQEHSEEES 1197
Cdd:PRK12678 144 KAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQ----GDRREERG 219
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039765608 1198 DSQHQHGHQHEQQRGHQHQHEHEQPESGHRQQQSSGRGHQGAHQEQGRDSARSRGSNQGHSSSR 1261
Cdd:PRK12678 220 RRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNER 283
|
|
| EF-hand_7 |
pfam13499 |
EF-hand domain pair; |
8-74 |
2.69e-04 |
|
EF-hand domain pair;
Pssm-ID: 463900 [Multi-domain] Cd Length: 67 Bit Score: 41.86 E-value: 2.69e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039765608 8 ITSMIEIFQQYstsDKEEE-TLSKEELKELLEGQLQAvlKNPDDQDIaEVFMQMLDVDHDDKLDFAEY 74
Cdd:pfam13499 1 EEKLKEAFKLL---DSDGDgYLDVEELKKLLRKLEEG--EPLSDEEV-EELFKEFDLDKDGRISFEEF 62
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
1270-1507 |
2.72e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 47.21 E-value: 2.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1270 SARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSQVHSGVQVEGRRGQSSSANRRAGSSSGSGVQGASAGGLAADAS 1349
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1350 RRSGARQGQASAQGRAGSQGQAQGRIGSSADRQGRRGVSESQASDSEGhsdfsEGQAVGAHRQSEAGQRHEQRSSRGQHG 1429
Cdd:PRK12678 136 AARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQA-----EAERGERGRREERGRDGDDRDRRDRRE 210
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039765608 1430 SGyyyEQEHSEEESDSQHQHGHQHEQQRGTQHQHEHQQPESGHRQQQSSGRGhqgthqeqGRDSARSRGSNQGHSSSR 1507
Cdd:PRK12678 211 QG---DRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRG--------GRRGRRFRDRDRRGRRGG 277
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
265-468 |
2.77e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 47.21 E-value: 2.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 265 RQQSHSKPSPVRADQRRSRAGQAGSSKVSARSGSGGRGQSPDGSGRSSNRRDRPRQPSPSQSSDSqvhSGVQVEGRRGQS 344
Cdd:PRK12678 58 ARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAP---EAAQARERRERG 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 345 SSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRVGSS----ADRQGRRGVSESQASDSEG 420
Cdd:PRK12678 135 EAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGrreeRGRDGDDRDRRDRREQGDR 214
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1039765608 421 HSDfsEGQAVGAHRQSGAGQRHEQRSSRGQHGSRYYYEQEHSEEESDS 468
Cdd:PRK12678 215 REE--RGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGG 260
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
240-467 |
3.20e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 46.82 E-value: 3.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 240 RPRADSQKEPQSSHGQADNSDSEGGRQQSHSKPSPVRADQRRSRAGQAGSSKVSARSGSGGRGQSPDGSGRSSNRRDRPR 319
Cdd:PRK12678 69 TPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEG 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 320 QPSPSQSSDSqvHSGVQVEGRRGQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRVG 399
Cdd:PRK12678 149 GEQPATEARA--DAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDR 226
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039765608 400 SSADRQGRRGVSESQASDSEGHSDFSEGqavGAHRQSGAGQRHEQRSSRGQHGSRYYYEQEHSEEESD 467
Cdd:PRK12678 227 RGRRRRRDRRDARGDDNREDRGDRDGDD---GEGRGGRRGRRFRDRDRRGRRGGDGGNEREPELREDD 291
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
2406-2650 |
4.68e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 46.44 E-value: 4.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2406 SEGQAVGAHRQSGAGQRHEQRSSRGQHGSGYYYEQEHSEEESDSQHQHGHQHEQQRGHQHQHQHQHEHEQPESGHRQQQS 2485
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2486 SGRGhqGAHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSsdsqvhsg 2565
Cdd:PRK12678 136 AARR--GAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR-------- 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2566 vqvEGRRGQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQaQGRVGSSADRQGRRGVSESQ 2645
Cdd:PRK12678 206 ---RDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGR-RGRRFRDRDRRGRRGGDGGN 281
|
....*
gi 1039765608 2646 ASDSE 2650
Cdd:PRK12678 282 EREPE 286
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
2656-2900 |
5.18e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 46.44 E-value: 5.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2656 SEGQAVGAHRQSGAGQRHEQRSSRSQHGSGYYYEQEHSEEESDSQHQHSHQHEQQRGHQHQHQHQHEHEQPESGHRQQQS 2735
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2736 SGRGnqGAHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSsdshvhsg 2815
Cdd:PRK12678 136 AARR--GAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR-------- 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2816 vqvEGRRGQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQaQGRVGSSADRQGRRGVSESQ 2895
Cdd:PRK12678 206 ---RDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGR-RGRRFRDRDRRGRRGGDGGN 281
|
....*
gi 1039765608 2896 ASDSE 2900
Cdd:PRK12678 282 EREPE 286
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
671-915 |
6.74e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 46.05 E-value: 6.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 671 SEGQAVGAHRQSGAGQRHEQRSSRGQHGSGYYYEQEHSEEESDSQHQHGHQHEQQRGHQHQHQHQHEHEQPESGHRQQQS 750
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 751 SGRGhqGAHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSsdsqvhsg 830
Cdd:PRK12678 136 AARR--GAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR-------- 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 831 vqvEGRRGQSSSANRRAGSSSGSGVQGTSAGGLAADASRRSGARQGQASAQGRAGSQGQaQGRVGSSADRQGRRGVSESQ 910
Cdd:PRK12678 206 ---RDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGR-RGRRFRDRDRRGRRGGDGGN 281
|
....*
gi 1039765608 911 ASDSE 915
Cdd:PRK12678 282 EREPE 286
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
861-1065 |
7.92e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 45.67 E-value: 7.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 861 GGLAADASRRSGARQGQASAQGRAGSQGQAQGRVGSSADRQGRRGVSESQASDSEGHSDFSEGQAVGAHRQSGAGQRHEQ 940
Cdd:PRK12678 60 GGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARR 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 941 RSSRGQHGSGYYYEQEHSEEESDSQHQHGHQHEQQRGHQHQHQHQHEHEQPESGHRQQQSSGRGNQGAHQKQGRDSARSR 1020
Cdd:PRK12678 140 GAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERG 219
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1039765608 1021 GSNQGHSSSRHQADSPRVSARSGS*GR*QSPDASGRNSTKRDRPR 1065
Cdd:PRK12678 220 RRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGR 264
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
2329-2550 |
8.19e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 45.67 E-value: 8.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2329 NRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRVGSSADRQGRRGVSESQASDSEGHSDFSEG 2408
Cdd:PRK12678 57 EARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEA 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2409 QAVGAHRQSGAGQRHEQRSSRGQhgsgyyyEQEHSEEESDSQHQHGHQHEQQRGHQHQHQHQHEHEQPESGHRQQQSSGR 2488
Cdd:PRK12678 137 ARRGAARKAGEGGEQPATEARAD-------AAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRR 209
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039765608 2489 ghqGAHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGsGGRGQSPDASGRSSNRRDRPR 2550
Cdd:PRK12678 210 ---EQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNRED-RGDRDGDDGEGRGGRRGRRFR 267
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
3501-3707 |
1.63e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 44.51 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 3501 AHQEQGRDSARSRGSnqghSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSQvHSGVQVEGRR 3580
Cdd:PRK12678 57 EARGGGAAAAAATPA----APAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASA-PEAAQARERR 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 3581 GQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRvgSSADRQGRRGVSGSQASDSEGH 3660
Cdd:PRK12678 132 ERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAER--GERGRREERGRDGDDRDRRDRR 209
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1039765608 3661 SDF----SEGQAVGAHRQSGAGQRHEQRSSRGQHGSGYYYEQEHSEEESDS 3707
Cdd:PRK12678 210 EQGdrreERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGG 260
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
3664-3908 |
1.66e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 44.51 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 3664 SEGQAVGAHRQSGAGQRHEQRSSRGQHGSGYYYEQEHSEEESDSQHQHGHQHEQQRGHQHQHQHQHEHEQPESGHRQQQF 3743
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 3744 SGRGhqGAHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSsdsqvhsg 3823
Cdd:PRK12678 136 AARR--GAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR-------- 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 3824 vqvEGRRGQSSSANRRAGSSSSSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQaQGRVGSSADRQGRRGVSESQ 3903
Cdd:PRK12678 206 ---RDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGR-RGRRFRDRDRRGRRGGDGGN 281
|
....*
gi 1039765608 3904 ASDSE 3908
Cdd:PRK12678 282 EREPE 286
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
1901-2145 |
1.66e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 44.51 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1901 SEGQAVGAHRQSGAGQRHEQRSSRGQHGSGYYYEQEHSEEESDSQHQHGHQHEQQRGHQHQHQHQHEHEQPESGHRQQQF 1980
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1981 SGRGhqGAHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSsdsqvhsg 2060
Cdd:PRK12678 136 AARR--GAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR-------- 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2061 vqvEGRRGQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQaQGRVGSSADRQGRRGVSESQ 2140
Cdd:PRK12678 206 ---RDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGR-RGRRFRDRDRRGRRGGDGGN 281
|
....*
gi 1039765608 2141 ASDSE 2145
Cdd:PRK12678 282 EREPE 286
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
3587-3808 |
1.80e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 44.51 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 3587 NRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRVGSSADRQGRRGVSGSQASDSEGHSDFSEG 3666
Cdd:PRK12678 57 EARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEA 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 3667 QAVGAHRQSGAGQRHEQRSSRGQhgsgyyyEQEHSEEESDSQHQHGHQHEQQRGHQHQHQHQHEHEQPESGHRQQQfsgR 3746
Cdd:PRK12678 137 ARRGAARKAGEGGEQPATEARAD-------AAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR---R 206
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039765608 3747 GHQGAHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGsGGRGQSPDASGRSSNRRDRPR 3808
Cdd:PRK12678 207 DRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNRED-RGDRDGDDGEGRGGRRGRRFR 267
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
2569-2800 |
1.80e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 44.51 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2569 EGRRGQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRVGSSADRQGRRGVSESQASD 2648
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2649 SeghsdfSEGQAVGAHRQSGAGQRHEQRSSRSQHGsgyyYEQEHSEEESDSQHQHSHQHEQQRGHQHQHQHQHEHEQPES 2728
Cdd:PRK12678 136 A------ARRGAARKAGEGGEQPATEARADAAERT----EEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR 205
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039765608 2729 GHRQQQSSGRGNQGAH---QEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGqspdasGRSSNRRDRPR 2800
Cdd:PRK12678 206 RDRREQGDRREERGRRdggDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRG------RRFRDRDRRGR 274
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
4119-4344 |
1.85e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 44.51 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 4119 SGARQGQ---ASAQGRAGSQGQAQGRVGSSADRQGRRGVSESQASDSEGHsdfsegqavGAHRQSGAGQRHEQRSSRGQH 4195
Cdd:PRK12678 44 SGMRKGEliaAIKEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQP---------AAEAAAAKAEAAPAARAAAAA 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 4196 GSGYYYEQEHSEEESDSQHQQGHQHEQQRGHQHQHQHQHEHEQPESGHRQQQSSgRGHQGAHQEQGRDSARSRGSNQGHS 4275
Cdd:PRK12678 115 AAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEE-RDERRRRGDREDRQAEAERGERGRR 193
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039765608 4276 SSRHQADSPRVSARSGSGGRGQSPDGSGRSSNRRDRPRQPSASQSSDSQVHSGVQVEAQRGQSSSANRR 4344
Cdd:PRK12678 194 EERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRR 262
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
758-964 |
1.94e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 44.51 E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 758 AHQEQGRDSARSRGSnqghSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSQvHSGVQVEGRR 837
Cdd:PRK12678 57 EARGGGAAAAAATPA----APAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASA-PEAAQARERR 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 838 GQSSSANRRAGSSSGSGVQGTSAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRvgSSADRQGRRGVSESQASDSEGH 917
Cdd:PRK12678 132 ERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAER--GERGRREERGRDGDDRDRRDRR 209
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1039765608 918 SDF----SEGQAVGAHRQSGAGQRHEQRSSRGQHGSGYYYEQEHSEEESDS 964
Cdd:PRK12678 210 EQGdrreERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGG 260
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
1352-1573 |
2.19e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 44.12 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1352 SGARQGQ---ASAQGRAGSQGQAQGRIGSSADRQGRRGVSESQASDSEGHSDFSEGQAVGAHRQSEAGQRHEQRSSRGQH 1428
Cdd:PRK12678 44 SGMRKGEliaAIKEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPE 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1429 GSGyYYEQEHSEEESDSQHQHGHQHEQQRGTQHQHEHQQPESGHRQQQSSGRGHQGThQEQGRDSARSRGSNQGHSSSRH 1508
Cdd:PRK12678 124 AAQ-ARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDRE-DRQAEAERGERGRREERGRDGD 201
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039765608 1509 QADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSQVHSGVQVEGRRRQSSSANRR 1573
Cdd:PRK12678 202 DRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRF 266
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
234-419 |
2.21e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 44.12 E-value: 2.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 234 QREGNRRPRADSQKEPQSSHGQADNSDSEGGRQQSHSKPSPVRADQRRSRAGQAGSSKVSARSGSGGRGQSPDGSGRSSN 313
Cdd:PRK12678 107 AARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAE 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 314 RRDRPRQPSPSQSSDSQvhsgvQVEGRRGQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQ 393
Cdd:PRK12678 187 RGERGRREERGRDGDDR-----DRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGR 261
|
170 180
....*....|....*....|....*.
gi 1039765608 394 aQGRVGSSADRQGRRGVSESQASDSE 419
Cdd:PRK12678 262 -RGRRFRDRDRRGRRGGDGGNEREPE 286
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
1509-1677 |
2.49e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 44.12 E-value: 2.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1509 QADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSQvHSGVQVEGRRRQSSSANRRAGSSSGSGVQGASAG 1588
Cdd:PRK12678 77 ARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASA-PEAAQARERRERGEAARRGAARKAGEGGEQPATE 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1589 GLAADASRRSGARQGQASAQGRAGSQGQAQGRvgSSADRQGRRGVSESQASDSEGHSDF----SEGQAVGAHRQSGAGQR 1664
Cdd:PRK12678 156 ARADAAERTEEEERDERRRRGDREDRQAEAER--GERGRREERGRDGDDRDRRDRREQGdrreERGRRDGGDRRGRRRRR 233
|
170
....*....|...
gi 1039765608 1665 HEQRSSRGQHGSG 1677
Cdd:PRK12678 234 DRRDARGDDNRED 246
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
2243-2449 |
2.68e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 43.74 E-value: 2.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2243 AHQEQGRDSARSRGSnqghSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSQvHSGVQVEGRR 2322
Cdd:PRK12678 57 EARGGGAAAAAATPA----APAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASA-PEAAQARERR 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2323 GQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRvgSSADRQGRRGVSESQASDSEGH 2402
Cdd:PRK12678 132 ERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAER--GERGRREERGRDGDDRDRRDRR 209
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1039765608 2403 SDF----SEGQAVGAHRQSGAGQRHEQRSSRGQHGSGYYYEQEHSEEESDS 2449
Cdd:PRK12678 210 EQGdrreERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGG 260
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
4006-4212 |
2.68e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 43.74 E-value: 2.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 4006 AHQEQGRDSARSRGSnqghSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSQvHSGVQVEGRR 4085
Cdd:PRK12678 57 EARGGGAAAAAATPA----APAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASA-PEAAQARERR 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 4086 GQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRvgSSADRQGRRGVSESQASDSEGH 4165
Cdd:PRK12678 132 ERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAER--GERGRREERGRDGDDRDRRDRR 209
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1039765608 4166 SDF----SEGQAVGAHRQSGAGQRHEQRSSRGQHGSGYYYEQEHSEEESDS 4212
Cdd:PRK12678 210 EQGdrreERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGG 260
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
2493-2698 |
2.87e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 43.74 E-value: 2.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2493 AHQEQGRDSARSRGSnqghSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSQvHSGVQVEGRR 2572
Cdd:PRK12678 57 EARGGGAAAAAATPA----APAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASA-PEAAQARERR 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2573 GQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRvgSSADRQGRRGVSESQASDSEGH 2652
Cdd:PRK12678 132 ERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAER--GERGRREERGRDGDDRDRRDRR 209
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2653 SDF----SEGQAVGAHRQSGAGQRHEQRSSRSQHGSGYYYEQEHSEEESD 2698
Cdd:PRK12678 210 EQGdrreERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRG 259
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
1988-2180 |
2.90e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 43.74 E-value: 2.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1988 AHQEQGRDSARSRGSnqghSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSQvHSGVQVEGRR 2067
Cdd:PRK12678 57 EARGGGAAAAAATPA----APAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASA-PEAAQARERR 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2068 GQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRvgSSADRQGRRGVSESQASDSEGH 2147
Cdd:PRK12678 132 ERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAER--GERGRREERGRDGDDRDRRDRR 209
|
170 180 190
....*....|....*....|....*....|....*..
gi 1039765608 2148 SDF----SEGQAVGAHRQSGAGQRHEQRSSRGQHGSG 2180
Cdd:PRK12678 210 EQGdrreERGRRDGGDRRGRRRRRDRRDARGDDNRED 246
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
3751-3943 |
2.90e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 43.74 E-value: 2.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 3751 AHQEQGRDSARSRGSnqghSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSQvHSGVQVEGRR 3830
Cdd:PRK12678 57 EARGGGAAAAAATPA----APAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASA-PEAAQARERR 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 3831 GQSSSANRRAGSSSSSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRvgSSADRQGRRGVSESQASDSEGH 3910
Cdd:PRK12678 132 ERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAER--GERGRREERGRDGDDRDRRDRR 209
|
170 180 190
....*....|....*....|....*....|....*..
gi 1039765608 3911 SDF----SEGQAVGAHRQSGAGQRHEQRSSRGQHGSG 3943
Cdd:PRK12678 210 EQGdrreERGRRDGGDRRGRRRRRDRRDARGDDNRED 246
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
1402-1642 |
2.95e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 43.74 E-value: 2.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1402 SEGQAVGAHRQSEAGQRHEQRSSRGQHGSGYYYEQEHSEEESDSQHQHGHQHEQQRgTQHQHEHQQPESGHRQQQSSGRG 1481
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAA-AAAAAEAASAPEAAQARERRERG 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1482 HQGTHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSqvhsgvqvE 1561
Cdd:PRK12678 135 EAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR--------R 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1562 GRRRQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQaQGRVGSSADRQGRRGVSESQASDS 1641
Cdd:PRK12678 207 DRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGR-RGRRFRDRDRRGRRGGDGGNEREP 285
|
.
gi 1039765608 1642 E 1642
Cdd:PRK12678 286 E 286
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
1239-1445 |
3.83e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 43.35 E-value: 3.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1239 AHQEQGRDSARSRGSnqghSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSQvHSGVQVEGRR 1318
Cdd:PRK12678 57 EARGGGAAAAAATPA----APAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASA-PEAAQARERR 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1319 GQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRigSSADRQGRRGVSESQASDSEGH 1398
Cdd:PRK12678 132 ERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAER--GERGRREERGRDGDDRDRRDRR 209
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1039765608 1399 SDF----SEGQAVGAHRQSEAGQRHEQRSSRGQHGSGYYYEQEHSEEESDS 1445
Cdd:PRK12678 210 EQGdrreERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGG 260
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
2774-3020 |
4.24e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 43.35 E-value: 4.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2774 SARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSHVHSGVQVEGRRGQSSSANRRAGSSSGSGVQGASAGGLAADAS 2853
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2854 RRSGARQGQASAQGRAGSQGQAQGRVGSSADRQGRRGVSESQASDSEghsdfsEGQAVGAHRQSGAGQRHEQRSSRGQHG 2933
Cdd:PRK12678 136 AARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQ------AEAERGERGRREERGRDGDDRDRRDRR 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2934 sgfypvyyyyEQEHSEEESDSQHQHGHQHEQQRGHQHQHQHQHEHEQPESGHRQQQSSGRGHQGahqEQGRDSARSRGSN 3013
Cdd:PRK12678 210 ----------EQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRG---RRFRDRDRRGRRG 276
|
....*..
gi 1039765608 3014 QGHSSSR 3020
Cdd:PRK12678 277 GDGGNER 283
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
2747-2935 |
4.82e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 42.97 E-value: 4.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2747 QGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDShvhSGVQVEGRRGQSS 2826
Cdd:PRK12678 59 RGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAP---EAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2827 SANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRvgSSADRQGRRGVSESQASDSEGHSDF- 2905
Cdd:PRK12678 136 AARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAER--GERGRREERGRDGDDRDRRDRREQGd 213
|
170 180 190
....*....|....*....|....*....|...
gi 1039765608 2906 ---SEGQAVGAHRQSGAGQRHEQRSSRGQHGSG 2935
Cdd:PRK12678 214 rreERGRRDGGDRRGRRRRRDRRDARGDDNRED 246
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
2319-2550 |
4.90e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 42.97 E-value: 4.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2319 EGRRGQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRVGSSADRQGRRGVSESQASD 2398
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2399 SeghsdfSEGQAVGAHRQSGAGQRHEQRSSRGQHGsgyyYEQEHSEEESDSQHQHGHQHEQQRGHQHQHQHQHEHEQPES 2478
Cdd:PRK12678 136 A------ARRGAARKAGEGGEQPATEARADAAERT----EEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR 205
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039765608 2479 GHRQQQS---SGRGHQGAHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGqspdasGRSSNRRDRPR 2550
Cdd:PRK12678 206 RDRREQGdrrEERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRG------RRFRDRDRRGR 274
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
1841-2045 |
6.21e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 42.58 E-value: 6.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1841 GGLAADASRRSGALQGQASAQGRAGSQGQAQGRVGSSADRQGRRGVSGSQASDSEGHSDFSEGQAVGAHRQSGAGQRHEQ 1920
Cdd:PRK12678 60 GGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARR 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1921 RSSRGQHGSGYYYEQEHSEEESDSQHQHGHQHEQQRGHQHQHQHQHEHEQPESGHRQQQFSGRGHQGAHQEQGRDSARSR 2000
Cdd:PRK12678 140 GAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERG 219
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1039765608 2001 GSNQGHSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPR 2045
Cdd:PRK12678 220 RRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGR 264
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
1227-1444 |
6.37e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 42.58 E-value: 6.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1227 RQQQSSGRGHQGAHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDS 1306
Cdd:PRK12678 79 RAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARA 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1307 qvhsgvQVEGRRGQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRIGSSADRQGRRG 1386
Cdd:PRK12678 159 ------DAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRR 232
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1039765608 1387 VSESQASDSEGHSD-FSEGQAVGAHRQSEAGQRHEQRSSRGQHGSGYYYEQEHSEEESD 1444
Cdd:PRK12678 233 RDRRDARGDDNREDrGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNEREPELREDD 291
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
746-963 |
7.30e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 42.58 E-value: 7.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 746 RQQQSSGRGHQGAHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDS 825
Cdd:PRK12678 79 RAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARA 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 826 qvHSGVQVEGRRGQSSSANRRAGSSSGSGVQGTSAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRVGSSADRQGRRG 905
Cdd:PRK12678 159 --DAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRR 236
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1039765608 906 VSESQASDSEGHSDFSEGqavGAHRQSGAGQRHEQRSSRGQHGSGYYYEQEHSEEESD 963
Cdd:PRK12678 237 DARGDDNREDRGDRDGDD---GEGRGGRRGRRFRDRDRRGRRGGDGGNEREPELREDD 291
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
2231-2448 |
7.42e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 42.58 E-value: 7.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2231 RQQQSSGRGHQGAHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDS 2310
Cdd:PRK12678 79 RAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARA 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 2311 qvHSGVQVEGRRGQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRVGSSADRQGRRG 2390
Cdd:PRK12678 159 --DAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRR 236
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1039765608 2391 VSESQASDSEGHSDFSEGqavGAHRQSGAGQRHEQRSSRGQHGSGYYYEQEHSEEESD 2448
Cdd:PRK12678 237 DARGDDNREDRGDRDGDD---GEGRGGRRGRRFRDRDRRGRRGGDGGNEREPELREDD 291
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
3489-3706 |
7.48e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 42.58 E-value: 7.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 3489 RQQQSSGRGHQGAHQEQGRDSARSRGSNQGHSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDS 3568
Cdd:PRK12678 79 RAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARA 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 3569 qvhsgvQVEGRRGQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRVGSSADRQGRRG 3648
Cdd:PRK12678 159 ------DAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRR 232
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1039765608 3649 VSGSQASDSEGHSD-FSEGQAVGAHRQSGAGQRHEQRSSRGQHGSGYYYEQEHSEEESD 3706
Cdd:PRK12678 233 RDRRDARGDDNREDrGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNEREPELREDD 291
|
|
| ser_rich_anae_1 |
NF033849 |
serine-rich protein; This serine-rich protein belongs to a family with large size (over 1000 ... |
1341-1660 |
8.71e-03 |
|
serine-rich protein; This serine-rich protein belongs to a family with large size (over 1000 amino acids), which a highly serine-rich central region that averages over 300 aa in length. Species encoding members of this family of proteins tend to be anaerobic bacteria, including Gram-positive bacteria of the human gut microbiome and Chloroflexi from marine sediments.
Pssm-ID: 468206 [Multi-domain] Cd Length: 1122 Bit Score: 42.30 E-value: 8.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1341 AGGLAADASRRSGARQGQASAQGRAGSQGQaqgrigssadrqgrrgvsesqaSDSEGHSDfSEGQAVGAHRQSEAGQRHE 1420
Cdd:NF033849 232 AANLGQSAGTGYGESVGHSTSQGQSHSVGT----------------------SESHSVGT-SQSQSHTTGHGSTRGWSHT 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1421 QRSSRGqHGSGYYYEQEHSEEESDSQHQHGHQHEQQRGTQHQHEHQQPESGHRQQQSSGrGHQGTHQEQGRDSARSRGSN 1500
Cdd:NF033849 289 QSTSES-ESTGQSSSVGTSESQSHGTTEGTSTTDSSSHSQSSSYNVSSGTGVSSSHSDG-TSQSTSISHSESSSESTGTS 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1501 QGHSSSRHQADSPRVSARSG---SGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSQVHSGVQVEGRRRQSSSANRRAGSS 1577
Cdd:NF033849 367 VGHSTSSSVSSSESSSRSSSsgvSGGFSGGIAGGGVTSEGLGASQGGSEGWGSGDSVQSVSQSYGSSSSTGTSSGHSDSS 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1578 SGSGVQGASAG-GLAADASRRSGARQGQASAQGRA----GSQGQAQGRVGSSADRQGrRGVSESQaSDSEGHSDfSEGQA 1652
Cdd:NF033849 447 SHSTSSGQADSvSQGTSWSEGTGTSQGQSVGTSESwstsQSETDSVGDSTGTSESVS-QGDGRST-GRSESQGT-SLGTS 523
|
....*...
gi 1039765608 1653 VGAHRQSG 1660
Cdd:NF033849 524 GGRTSGAG 531
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
921-1150 |
9.09e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 42.20 E-value: 9.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 921 SEGQAVGAHRQSGAGQRHEQRSSRGQHGSGYYYEQEHSEEESDSQHQHGHQHEQQRGHQHQHQHQHEHEQPESGHRQQQS 1000
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1001 SGRGnqGAHQKQGRDSARSRGSNQGHSSSRHQADSPRVSARSGS*GR*QSPDASGRNSTKRDRPRQPSPSQSSDSHVHSG 1080
Cdd:PRK12678 136 AARR--GAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGD 213
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039765608 1081 KA---GSISGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRVGSSADRQGRRGVSESQASDSE 1150
Cdd:PRK12678 214 RReerGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNEREPE 286
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
1738-1944 |
9.57e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 42.20 E-value: 9.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1738 AHQEQGRDSARSRGSnqghSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSQvHSGVQVEGRR 1817
Cdd:PRK12678 57 EARGGGAAAAAATPA----APAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASA-PEAAQARERR 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1818 GQSSSANRRAGSSSGSGVQGASAGGLAADASRRSGALQGQASAQGRAGSQGQAQGRvgSSADRQGRRGVSGSQASDSEGH 1897
Cdd:PRK12678 132 ERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAER--GERGRREERGRDGDDRDRRDRR 209
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1039765608 1898 SDF----SEGQAVGAHRQSGAGQRHEQRSSRGQHGSGYYYEQEHSEEESDS 1944
Cdd:PRK12678 210 EQGdrreERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGG 260
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
996-1199 |
9.98e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 42.20 E-value: 9.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 996 RQQQSSGRGNQGAHQKQGRDSARSRGSNQGHSSSRHQADSPRVSARSGS*GR*QSPDASGRNSTKRDRPRQPSPSQSSDS 1075
Cdd:PRK12678 58 ARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAA 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039765608 1076 HVHS-GKAGSISGSGVQGASAGGLAADASRRSGARQGQASAQGRAGSQGQAQGRVGSSADRQGRRGVSESQASDSEGHSD 1154
Cdd:PRK12678 138 RRGAaRKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREE 217
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1039765608 1155 fsEGQAVGAHRQSGAGQRHEQRSSRGQHGSRYYYEQEHSEEESDS 1199
Cdd:PRK12678 218 --RGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGG 260
|
|
| |
