|
Name |
Accession |
Description |
Interval |
E-value |
| C1Q |
smart00110 |
Complement component C1q domain; Globular domain found in many collagens and eponymously in ... |
580-715 |
1.40e-66 |
|
Complement component C1q domain; Globular domain found in many collagens and eponymously in complement C1q. When part of full length proteins these domains form a 'bouquet' due to the multimerization of heterotrimers. The C1q fold is similar to that of tumour necrosis factor.
Pssm-ID: 128420 Cd Length: 135 Bit Score: 215.63 E-value: 1.40e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 580 ELSAHATPAFTAVLTSPFPASGMPVRFDRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWVALYKNNVPATYT 659
Cdd:smart00110 1 NYKAQPRSAFSVIRSNRPPPPGQPIRFDKVLYNQQGHYDPRTGKFTCPVPGVYYFSYHVESKGRNVKVSLMKNGIQVMST 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1039768032 660 YDEYKKGYLDQASGGAVLQLRPNDQVWVQMPSDQaNGLYSTEYIHSSFSGFLLCPT 715
Cdd:smart00110 81 YDEYQKGLYDVASGGALLQLRQGDQVWLELPDEK-NGLYAGEYVDSTFSGFLLFPD 135
|
|
| C1q |
pfam00386 |
C1q domain; C1q is a subunit of the C1 enzyme complex that activates the serum complement ... |
588-712 |
5.12e-54 |
|
C1q domain; C1q is a subunit of the C1 enzyme complex that activates the serum complement system.
Pssm-ID: 395310 [Multi-domain] Cd Length: 126 Bit Score: 181.71 E-value: 5.12e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 588 AFTAVLTSPFPASG-MPVRFDRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVH-VKGTNVWVALYKNNVPATYTYDEYKK 665
Cdd:pfam00386 1 AFSAGRTTGLTAPNeQPVRFDKVLTNIGGHYDPATGKFTCPVPGVYYFSYHITtVDGKSLYVSLVKNGQEVVSFYDQPQK 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1039768032 666 GYLDQASGGAVLQLRPNDQVWVQMpsDQANGLYSTEY-IHSSFSGFLL 712
Cdd:pfam00386 81 GSLDVASGSVVLELQRGDEVWLQL--TGYNGLYYDGSdTDSTFSGFLL 126
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
191-473 |
8.18e-26 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 111.15 E-value: 8.18e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 191 GAPGPPGFRGEPGPQGEPGPRGDRGLKGDNGvgQPGLPGAPGQagapgppglpgpaglgkpglDGIPGAPGDKGDSGPPG 270
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAG--PAGPPGPQGE--------------------RGEKGPAGPQGEAGPQG 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 271 VPGSRGEPGAVGPKGPPGVDGV-GIPGAAGVPGPQGPVGAKGEPGLRGPPGLIGPVGY------GMPGKPGPKGDRGPVG 343
Cdd:NF038329 175 PAGKDGEAGAKGPAGEKGPQGPrGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDgqqgpdGDPGPTGEDGPQGPDG 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 344 APGLLGDRGEPGEDGKPGEQGPqglggppglpgsAGLPGRRGPPGSKGEVGPGGPPgvpgirGDQGPNGLAGKPGLPGER 423
Cdd:NF038329 255 PAGKDGPRGDRGEAGPDGPDGK------------DGERGPVGPAGKDGQNGKDGLP------GKDGKDGQNGKDGLPGKD 316
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1039768032 424 glpgahgppgptgpkgepgftGRPGGPGVAGALGQKGDLGLPGQPGLRGP 473
Cdd:NF038329 317 ---------------------GKDGQPGKDGLPGKDGKDGQPGKPAPKTP 345
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
138-361 |
1.05e-25 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 110.77 E-value: 1.05e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 138 GPPGLPGKVGPPGQPGLRGEPGIRGDqglrgppgppglpgpsgitvPGKPGAQGAPGPPGFRGEPGPQGEPGPRGDRGLK 217
Cdd:NF038329 126 GPAGPAGEQGPRGDRGETGPAGPAGP--------------------PGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAK 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 218 GDNG-VGQPGLPGAPGQAGAPGPPGLPGPAGLGKPGLDGIPGAPGDKGDSGPPGVPGSRGEPGAVGPKGPPGVDGVgiPG 296
Cdd:NF038329 186 GPAGeKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGP--RG 263
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039768032 297 AAGVPGPQGPVGAKGEPGLRGPPGLIGPVGY-GMPGKPGPKGDRGPVGAPGLLGDRGEPGEDGKPG 361
Cdd:NF038329 264 DRGEAGPDGPDGKDGERGPVGPAGKDGQNGKdGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPG 329
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
135-355 |
1.24e-23 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 104.60 E-value: 1.24e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 135 GKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPpgppglpgpsgitvPGKPGAQGAPGPPGFRGEPGPQGEPGPRGDR 214
Cdd:NF038329 123 GPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGE--------------RGEKGPAGPQGEAGPQGPAGKDGEAGAKGPA 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 215 GLKGDNG----VGQPGLPGAPGQAGAPGPPGLPGPAGLGKPGLDGIPGAPGDKGDSGPPGVPGSRGEPGAVGPKGPPGVD 290
Cdd:NF038329 189 GEKGPQGprgeTGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEA 268
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 291 G-VGIPGAAGVPGPQGPVGAKGEPGLRGPPGLIGPVGY----GMPGKPGPKGDRGPVGAPGLLGDRGEPG 355
Cdd:NF038329 269 GpDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQngkdGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
197-495 |
2.59e-23 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 103.45 E-value: 2.59e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 197 GFRGEPGPQGEPGPRGDRGLKGDngvgqpglpgapgqagapgppglpgpaglgkPGLDGIPGAPGDKGDSGPPGVPGSRG 276
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGD-------------------------------RGETGPAGPAGPPGPQGERGEKGPAG 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 277 EPGAVGPKGPPGVDGVgiPGAAGVPGPQGPVGAKGEPGLRGPPGLIGPVGygMPGKPGPKGDRGPVGAPGLlGDRGEPGE 356
Cdd:NF038329 166 PQGEAGPQGPAGKDGE--AGAKGPAGEKGPQGPRGETGPAGEQGPAGPAG--PDGEAGPAGEDGPAGPAGD-GQQGPDGD 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 357 DGKPGEQGPQGLggppglpgsAGLPGRRGPPGSKGEVGPGGPpgvpgiRGDQGPNGLAGKPGLPGERglpgahgppgptg 436
Cdd:NF038329 241 PGPTGEDGPQGP---------DGPAGKDGPRGDRGEAGPDGP------DGKDGERGPVGPAGKDGQN------------- 292
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1039768032 437 pkgepgftGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLK 495
Cdd:NF038329 293 --------GKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
134-336 |
2.19e-15 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 79.18 E-value: 2.19e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 134 MGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLpgpsgitvPGKPGAQGAPGPPGfRGEPGPQGEPGPRGD 213
Cdd:NF038329 176 AGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGE--------AGPAGEDGPAGPAG-DGQQGPDGDPGPTGE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 214 RGLKGDngVGQPGLPGAPGqagapgppglpgpaglgKPGLDGIPGAPGDKGDSGPPGVPGSRGEPGAVGPKGPPGVDGVG 293
Cdd:NF038329 247 DGPQGP--DGPAGKDGPRG-----------------DRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQN 307
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1039768032 294 ipGAAGVPGPQGPVGAKGEPGLRGPPGligpvGYGMPGKPGPK 336
Cdd:NF038329 308 --GKDGLPGKDGKDGQPGKDGLPGKDG-----KDGQPGKPAPK 343
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
388-513 |
1.60e-06 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 51.06 E-value: 1.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 388 GSKGEVGPGGPPGVPGIRGDQGPNGLAGKPGLPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQ 467
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1039768032 468 PGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGKVGEPG 513
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPG 242
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
135-360 |
2.81e-05 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 47.33 E-value: 2.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 135 GKAGPPGLPGKVGPPGQPGLRGEPGIRG-DQGLRGPPGPPGLPGPSGITVPGKPGAQGAPGPPGFRGEPGPQGEPGPRGD 213
Cdd:COG5164 34 GSTRPAGNTGGTRPAQNQGSTTPAGNTGgTRPAGNQGATGPAQNQGGTTPAQNQGGTRPAGNTGGTTPAGDGGATGPPDD 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 214 RGLKGDNGVGQPGLPGAPGQAGAPGPPGLPGPAGLGKpGLDGIPGAPGDKGDSGPPGVPGSRGEPGAVGPKGPPGVDGVG 293
Cdd:COG5164 114 GGATGPPDDGGSTTPPSGGSTTPPGDGGSTPPGPGST-GPGGSTTPPGDGGSTTPPGPGGSTTPPDDGGSTTPPNKGETG 192
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039768032 294 IP---GAAGVPGPQGPVGAKGEPGLRGPPGLIGPVGYGMPGKP--GPKGDRGPVGAPGLLGDRGEPGEDGKP 360
Cdd:COG5164 193 TDiptGGTPRQGPDGPVKKDDKNGKGNPPDDRGGKTGPKDQRPktNPIERRGPERPEAAALPAELTALEAEN 264
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
185-233 |
1.07e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 40.55 E-value: 1.07e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 1039768032 185 GKPGAQGAPGPPGFRGEPGPQGEPGPRGDRGLKGDNGV-GQPGLPGAPGQ 233
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPpGPPGPPGPPGA 50
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
186-392 |
4.45e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 43.82 E-value: 4.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 186 KPGAQGAPGPPGFRGEPGPQGEPGPRGDRGlkgdngvGQPGLPGAPGQAGAPGPPGLPGPAGLGKPGLDGIPGAPGDKGD 265
Cdd:PRK07764 583 QVEAVVGPAPGAAGGEGPPAPASSGPPEEA-------ARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPK 655
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 266 SGPPGVPGSRGEPGAVGPKGPPGVDGVGIPGAAGVPGPQGPVGAKGEPGLRGPPGLIGPVGYGMPGKPGPKGDRGPVGAP 345
Cdd:PRK07764 656 HVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAA 735
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1039768032 346 GLLG-DRGEPGEDGKPGEQGPQGLGGPPGLPGSAGLPGRRGPPGSKGE 392
Cdd:PRK07764 736 DDPVpLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEE 783
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| C1Q |
smart00110 |
Complement component C1q domain; Globular domain found in many collagens and eponymously in ... |
580-715 |
1.40e-66 |
|
Complement component C1q domain; Globular domain found in many collagens and eponymously in complement C1q. When part of full length proteins these domains form a 'bouquet' due to the multimerization of heterotrimers. The C1q fold is similar to that of tumour necrosis factor.
Pssm-ID: 128420 Cd Length: 135 Bit Score: 215.63 E-value: 1.40e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 580 ELSAHATPAFTAVLTSPFPASGMPVRFDRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWVALYKNNVPATYT 659
Cdd:smart00110 1 NYKAQPRSAFSVIRSNRPPPPGQPIRFDKVLYNQQGHYDPRTGKFTCPVPGVYYFSYHVESKGRNVKVSLMKNGIQVMST 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1039768032 660 YDEYKKGYLDQASGGAVLQLRPNDQVWVQMPSDQaNGLYSTEYIHSSFSGFLLCPT 715
Cdd:smart00110 81 YDEYQKGLYDVASGGALLQLRQGDQVWLELPDEK-NGLYAGEYVDSTFSGFLLFPD 135
|
|
| C1q |
pfam00386 |
C1q domain; C1q is a subunit of the C1 enzyme complex that activates the serum complement ... |
588-712 |
5.12e-54 |
|
C1q domain; C1q is a subunit of the C1 enzyme complex that activates the serum complement system.
Pssm-ID: 395310 [Multi-domain] Cd Length: 126 Bit Score: 181.71 E-value: 5.12e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 588 AFTAVLTSPFPASG-MPVRFDRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVH-VKGTNVWVALYKNNVPATYTYDEYKK 665
Cdd:pfam00386 1 AFSAGRTTGLTAPNeQPVRFDKVLTNIGGHYDPATGKFTCPVPGVYYFSYHITtVDGKSLYVSLVKNGQEVVSFYDQPQK 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1039768032 666 GYLDQASGGAVLQLRPNDQVWVQMpsDQANGLYSTEY-IHSSFSGFLL 712
Cdd:pfam00386 81 GSLDVASGSVVLELQRGDEVWLQL--TGYNGLYYDGSdTDSTFSGFLL 126
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
191-473 |
8.18e-26 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 111.15 E-value: 8.18e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 191 GAPGPPGFRGEPGPQGEPGPRGDRGLKGDNGvgQPGLPGAPGQagapgppglpgpaglgkpglDGIPGAPGDKGDSGPPG 270
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAG--PAGPPGPQGE--------------------RGEKGPAGPQGEAGPQG 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 271 VPGSRGEPGAVGPKGPPGVDGV-GIPGAAGVPGPQGPVGAKGEPGLRGPPGLIGPVGY------GMPGKPGPKGDRGPVG 343
Cdd:NF038329 175 PAGKDGEAGAKGPAGEKGPQGPrGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDgqqgpdGDPGPTGEDGPQGPDG 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 344 APGLLGDRGEPGEDGKPGEQGPqglggppglpgsAGLPGRRGPPGSKGEVGPGGPPgvpgirGDQGPNGLAGKPGLPGER 423
Cdd:NF038329 255 PAGKDGPRGDRGEAGPDGPDGK------------DGERGPVGPAGKDGQNGKDGLP------GKDGKDGQNGKDGLPGKD 316
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1039768032 424 glpgahgppgptgpkgepgftGRPGGPGVAGALGQKGDLGLPGQPGLRGP 473
Cdd:NF038329 317 ---------------------GKDGQPGKDGLPGKDGKDGQPGKPAPKTP 345
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
138-361 |
1.05e-25 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 110.77 E-value: 1.05e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 138 GPPGLPGKVGPPGQPGLRGEPGIRGDqglrgppgppglpgpsgitvPGKPGAQGAPGPPGFRGEPGPQGEPGPRGDRGLK 217
Cdd:NF038329 126 GPAGPAGEQGPRGDRGETGPAGPAGP--------------------PGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAK 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 218 GDNG-VGQPGLPGAPGQAGAPGPPGLPGPAGLGKPGLDGIPGAPGDKGDSGPPGVPGSRGEPGAVGPKGPPGVDGVgiPG 296
Cdd:NF038329 186 GPAGeKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGP--RG 263
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039768032 297 AAGVPGPQGPVGAKGEPGLRGPPGLIGPVGY-GMPGKPGPKGDRGPVGAPGLLGDRGEPGEDGKPG 361
Cdd:NF038329 264 DRGEAGPDGPDGKDGERGPVGPAGKDGQNGKdGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPG 329
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
135-355 |
1.24e-23 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 104.60 E-value: 1.24e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 135 GKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPpgppglpgpsgitvPGKPGAQGAPGPPGFRGEPGPQGEPGPRGDR 214
Cdd:NF038329 123 GPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGE--------------RGEKGPAGPQGEAGPQGPAGKDGEAGAKGPA 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 215 GLKGDNG----VGQPGLPGAPGQAGAPGPPGLPGPAGLGKPGLDGIPGAPGDKGDSGPPGVPGSRGEPGAVGPKGPPGVD 290
Cdd:NF038329 189 GEKGPQGprgeTGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEA 268
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 291 G-VGIPGAAGVPGPQGPVGAKGEPGLRGPPGLIGPVGY----GMPGKPGPKGDRGPVGAPGLLGDRGEPG 355
Cdd:NF038329 269 GpDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQngkdGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
197-495 |
2.59e-23 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 103.45 E-value: 2.59e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 197 GFRGEPGPQGEPGPRGDRGLKGDngvgqpglpgapgqagapgppglpgpaglgkPGLDGIPGAPGDKGDSGPPGVPGSRG 276
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGD-------------------------------RGETGPAGPAGPPGPQGERGEKGPAG 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 277 EPGAVGPKGPPGVDGVgiPGAAGVPGPQGPVGAKGEPGLRGPPGLIGPVGygMPGKPGPKGDRGPVGAPGLlGDRGEPGE 356
Cdd:NF038329 166 PQGEAGPQGPAGKDGE--AGAKGPAGEKGPQGPRGETGPAGEQGPAGPAG--PDGEAGPAGEDGPAGPAGD-GQQGPDGD 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 357 DGKPGEQGPQGLggppglpgsAGLPGRRGPPGSKGEVGPGGPpgvpgiRGDQGPNGLAGKPGLPGERglpgahgppgptg 436
Cdd:NF038329 241 PGPTGEDGPQGP---------DGPAGKDGPRGDRGEAGPDGP------DGKDGERGPVGPAGKDGQN------------- 292
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1039768032 437 pkgepgftGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLK 495
Cdd:NF038329 293 --------GKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
134-336 |
2.19e-15 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 79.18 E-value: 2.19e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 134 MGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLpgpsgitvPGKPGAQGAPGPPGfRGEPGPQGEPGPRGD 213
Cdd:NF038329 176 AGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGE--------AGPAGEDGPAGPAG-DGQQGPDGDPGPTGE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 214 RGLKGDngVGQPGLPGAPGqagapgppglpgpaglgKPGLDGIPGAPGDKGDSGPPGVPGSRGEPGAVGPKGPPGVDGVG 293
Cdd:NF038329 247 DGPQGP--DGPAGKDGPRG-----------------DRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQN 307
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1039768032 294 ipGAAGVPGPQGPVGAKGEPGLRGPPGligpvGYGMPGKPGPK 336
Cdd:NF038329 308 --GKDGLPGKDGKDGQPGKDGLPGKDG-----KDGQPGKPAPK 343
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
388-513 |
1.60e-06 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 51.06 E-value: 1.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 388 GSKGEVGPGGPPGVPGIRGDQGPNGLAGKPGLPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQ 467
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1039768032 468 PGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGKVGEPG 513
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPG 242
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
135-360 |
2.81e-05 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 47.33 E-value: 2.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 135 GKAGPPGLPGKVGPPGQPGLRGEPGIRG-DQGLRGPPGPPGLPGPSGITVPGKPGAQGAPGPPGFRGEPGPQGEPGPRGD 213
Cdd:COG5164 34 GSTRPAGNTGGTRPAQNQGSTTPAGNTGgTRPAGNQGATGPAQNQGGTTPAQNQGGTRPAGNTGGTTPAGDGGATGPPDD 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 214 RGLKGDNGVGQPGLPGAPGQAGAPGPPGLPGPAGLGKpGLDGIPGAPGDKGDSGPPGVPGSRGEPGAVGPKGPPGVDGVG 293
Cdd:COG5164 114 GGATGPPDDGGSTTPPSGGSTTPPGDGGSTPPGPGST-GPGGSTTPPGDGGSTTPPGPGGSTTPPDDGGSTTPPNKGETG 192
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039768032 294 IP---GAAGVPGPQGPVGAKGEPGLRGPPGLIGPVGYGMPGKP--GPKGDRGPVGAPGLLGDRGEPGEDGKP 360
Cdd:COG5164 193 TDiptGGTPRQGPDGPVKKDDKNGKGNPPDDRGGKTGPKDQRPktNPIERRGPERPEAAALPAELTALEAEN 264
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
185-233 |
1.07e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 40.55 E-value: 1.07e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 1039768032 185 GKPGAQGAPGPPGFRGEPGPQGEPGPRGDRGLKGDNGV-GQPGLPGAPGQ 233
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPpGPPGPPGPPGA 50
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
186-392 |
4.45e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 43.82 E-value: 4.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 186 KPGAQGAPGPPGFRGEPGPQGEPGPRGDRGlkgdngvGQPGLPGAPGQAGAPGPPGLPGPAGLGKPGLDGIPGAPGDKGD 265
Cdd:PRK07764 583 QVEAVVGPAPGAAGGEGPPAPASSGPPEEA-------ARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPK 655
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 266 SGPPGVPGSRGEPGAVGPKGPPGVDGVGIPGAAGVPGPQGPVGAKGEPGLRGPPGLIGPVGYGMPGKPGPKGDRGPVGAP 345
Cdd:PRK07764 656 HVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAA 735
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1039768032 346 GLLG-DRGEPGEDGKPGEQGPQGLGGPPGLPGSAGLPGRRGPPGSKGE 392
Cdd:PRK07764 736 DDPVpLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEE 783
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
184-233 |
7.09e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 38.24 E-value: 7.09e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 1039768032 184 PGKPGAQGAPGPPGFRGEPGPQGEPGPRGDRGLKGDNgvGQPGLPGAPGQ 233
Cdd:pfam01391 9 PGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPP--GPPGAPGAPGP 56
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
273-339 |
2.81e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 36.32 E-value: 2.81e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039768032 273 GSRGEPGAVGPKGPPGVdgvgiPGAAGVPGPQGPVGAKGEPGLRGPPGLIGPvgygmPGKPGPKGDR 339
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGP-----PGPPGPPGPPGPPGEPGPPGPPGPPGPPGP-----PGAPGAPGPP 57
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
184-346 |
2.94e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 41.12 E-value: 2.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 184 PGKPGAQGAPGPPGfrgEPGPQGEPGPRGDRGLKGDNGVGQPGLPGAPGQAGAPGPPGLPGPAGLGKPGLDGIPGAPGDK 263
Cdd:PRK07764 612 AARPAAPAAPAAPA---APAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039768032 264 GDSGPPGVPGSRGEPGAVGPKGPPGVDGvGIPGAAGVPGPQGPVGAKGEPGLRGPPG-LIGPVGYGMPGKPGPKGDRGPV 342
Cdd:PRK07764 689 APAAPAGAAPAQPAPAPAATPPAGQADD-PAAQPPQAAQGASAPSPAADDPVPLPPEpDDPPDPAGAPAQPPPPPAPAPA 767
|
....
gi 1039768032 343 GAPG 346
Cdd:PRK07764 768 AAPA 771
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
250-291 |
4.94e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 35.93 E-value: 4.94e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1039768032 250 KPGLDGIPGAPGDKGDSGPPGVPGSRGEPGAVGPKGPPGVDG 291
Cdd:pfam01391 14 PPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| |
