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Conserved domains on  [gi|1039728998|ref|XP_017176307|]
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otospiralin isoform X1 [Mus musculus]

Protein Classification

OTOS domain-containing protein( domain architecture ID 10633539)

OTOS domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OTOS super family cl21047
Otospiralin; This family of proteins, Otospiralin, has a role in maintaining the neurosensory ...
 21-89 9.63e-41

Otospiralin; This family of proteins, Otospiralin, has a role in maintaining the neurosensory epithelium of the inner ear. This family of proteins is found in eukaryotes. Proteins in this family are approximately 90 amino acids in length.


The actual alignment was detected with superfamily member pfam15182:

Pssm-ID: 464549  Cd Length: 69  Bit Score: 128.42  E-value: 9.63e-41
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039728998 21 AKPMPEEADPHTQPPAMPYWPFSTSDFWNYVQYFQTQGAYPQIEDMARTFFAHFPLGSTLGFHVPYQED 89
Cdd:pfam15182  1 ARPVQEEGDPYAEPPAMPYWPFSTSDFWNYVEYFRSLGAYNQINDMARTFFAHYPLGDTLGYNVPYQEE 69
 
Name Accession Description Interval E-value
OTOS pfam15182
Otospiralin; This family of proteins, Otospiralin, has a role in maintaining the neurosensory ...
 21-89 9.63e-41

Otospiralin; This family of proteins, Otospiralin, has a role in maintaining the neurosensory epithelium of the inner ear. This family of proteins is found in eukaryotes. Proteins in this family are approximately 90 amino acids in length.


Pssm-ID: 464549  Cd Length: 69  Bit Score: 128.42  E-value: 9.63e-41
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039728998 21 AKPMPEEADPHTQPPAMPYWPFSTSDFWNYVQYFQTQGAYPQIEDMARTFFAHFPLGSTLGFHVPYQED 89
Cdd:pfam15182  1 ARPVQEEGDPYAEPPAMPYWPFSTSDFWNYVEYFRSLGAYNQINDMARTFFAHYPLGDTLGYNVPYQEE 69
 
Name Accession Description Interval E-value
OTOS pfam15182
Otospiralin; This family of proteins, Otospiralin, has a role in maintaining the neurosensory ...
 21-89 9.63e-41

Otospiralin; This family of proteins, Otospiralin, has a role in maintaining the neurosensory epithelium of the inner ear. This family of proteins is found in eukaryotes. Proteins in this family are approximately 90 amino acids in length.


Pssm-ID: 464549  Cd Length: 69  Bit Score: 128.42  E-value: 9.63e-41
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039728998 21 AKPMPEEADPHTQPPAMPYWPFSTSDFWNYVQYFQTQGAYPQIEDMARTFFAHFPLGSTLGFHVPYQED 89
Cdd:pfam15182  1 ARPVQEEGDPYAEPPAMPYWPFSTSDFWNYVEYFRSLGAYNQINDMARTFFAHYPLGDTLGYNVPYQEE 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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