|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
209-416 |
1.96e-25 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 105.09 E-value: 1.96e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 209 PARLRTLHNLVIQYAGQGRYEVAVPLCRQALEdlerssghCHPDVATMLNILALVYRDQNKYKEATELLHDALQIreqtl 288
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALE--------LDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 289 gpeHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIRekvlgadhPDVAKQLNNLALLCQNQGKFQDVERHYARALSIy 368
Cdd:COG0457 72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALEL- 139
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1039778160 369 ealggpqDPNVAKTKNNLASAYLKQNKYQQAEELYKEILSQEALPAPL 416
Cdd:COG0457 140 -------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLA 180
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
209-402 |
4.32e-20 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 94.60 E-value: 4.32e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 209 PARLRTLHNLVIQYAGQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIREQTL 288
Cdd:NF040586 517 PRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVL 596
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 289 -GPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLALLCQNQGKFQDVERHYARALSI 367
Cdd:NF040586 597 gGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDR 676
|
170 180 190
....*....|....*....|....*....|....*
gi 1039778160 368 YEALGGPQDPNVAKTKNNLASAYLKQNKYQQAEEL 402
Cdd:NF040586 677 YRRVLGEDHPFTLACRNNLAVLLRALGDPEEAREL 711
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
39-407 |
4.71e-18 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 88.05 E-value: 4.71e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 39 LEALRaEHHSLAGHLAEALA--GPGPVAgVELLEEKQQVVNhSLEAIELGLGEAQVL-LALSAHVSVL------EAEKQR 109
Cdd:NF040586 244 LDRLR-ERSPAAARLLELCAffGPEPIP-LDLLRSSDEMAR-LLLPYDLRLRELLLDgILLSRALRELgryalaRVDSGR 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 110 LRAQARRLAQenTWLREELEETQRRlRASEEAvaqleeekshlqfLGQLRQYDPPEESQRPESPPRRDSLAS-LFPSEEE 188
Cdd:NF040586 321 RTLQVHRLVQ--AVLRDRLSEEERA-RARHEV-------------HRILAAAAPGDEPDDPRNWPRYAELWPhLEPSGAL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 189 EKKGPEaagaaaaqqggyeipARlRTLHNLVIQYAGQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQN 268
Cdd:NF040586 385 ESDDPE---------------VR-RLLLDQVRYLYLRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLG 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 269 KYKEATELLHDAL--QIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLAL 346
Cdd:NF040586 449 RYEEARELDEDTLerQRRVLGLGEDHPHTLMTAGGLGADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAV 528
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039778160 347 LCQNQGKFQDVERHYARALSIYEALGGPQDPNVAKTKNNLASAYLKQNKYQQAEELYKEIL 407
Cdd:NF040586 529 SLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEAL 589
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
252-328 |
8.22e-17 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 75.12 E-value: 8.22e-17
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039778160 252 DVATMLNILALVYRDQNKYKEATELLHDALQIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREK 328
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
224-421 |
4.29e-16 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 81.89 E-value: 4.29e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 224 GQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIREQTLGPEHPAVAATLNNLA 303
Cdd:NF040586 490 ALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLA 569
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 304 VLYGKRGRYREAEPLCQRALEIREKVL-GADHPDVAKQLNNLALLCQNQGKFQDVERHYARALSIYEALGGPQDPNVAKT 382
Cdd:NF040586 570 RDLRELGRYAEALDLLEEALERYREVLgGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAA 649
|
170 180 190
....*....|....*....|....*....|....*....
gi 1039778160 383 KNNLASAYLKQNKYQQAEELYKEILsqEALPAPLGEPTP 421
Cdd:NF040586 650 ALSLANDLRALGDADEARELAREVL--DRYRRVLGEDHP 686
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
209-345 |
7.96e-16 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 81.12 E-value: 7.96e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 209 PARLRTLHNLVIQYAGQGRYEVAVPLCRQALEDLERSSGHCHPD-VATMLNiLALVYRDQNKYKEATELLHDALQIREQT 287
Cdd:NF040586 602 PDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDtLAAALS-LANDLRALGDADEARELAREVLDRYRRV 680
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1039778160 288 LGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLA 345
Cdd:NF040586 681 LGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHPYTLAAAVNLA 738
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
209-390 |
7.85e-13 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 71.49 E-value: 7.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 209 PARLRTLHNLVIQYAGQGRYEVAVPLCRQALEDLERS-SGHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIREQT 287
Cdd:NF040586 559 PRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRR 638
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 288 LGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLALLCQNQGKFQDVERHYARALSI 367
Cdd:NF040586 639 FGPDHPDTLAAALSLANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEG 718
|
170 180
....*....|....*....|...
gi 1039778160 368 YEALGGPQDPNVAKTKNNLASAY 390
Cdd:NF040586 719 LRERLGPDHPYTLAAAVNLANDL 741
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
217-337 |
5.64e-09 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 59.16 E-value: 5.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 217 NLVIQYAGQGRYEVAVPLCRQALEDLERSSGHCHP-DVATMLN---ILALVYRDQNKYKEATELLHDALQIREQTLGPEH 292
Cdd:NF040586 694 NLAVLLRALGDPEEARELAEAALEGLRERLGPDHPyTLAAAVNlanDLAALGDLDAALGEEALERLRRLLGEDLRAGPDH 773
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1039778160 293 PAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDV 337
Cdd:NF040586 774 PDTLACAANLALDLRATGRTEEAEELRADTLARLRRVLGPDHPDT 818
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
250-407 |
6.94e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 52.39 E-value: 6.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 250 HPDVATMLNILALVYRDQNKYKEATELLHDALQIreqtlgpeHPAVAATLNNLAVLYGKRGRYReAEPLCQRALEIRekv 329
Cdd:TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKK--------APDNAVVLNNLAWLYLELKDPR-ALEYAERALKLA--- 833
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039778160 330 lgadhPDVAKQLNNLALLCQNQGKFQDVERHYARALSIyealggpqDPNVAKTKNNLASAYLKQNKYQQAEELYKEIL 407
Cdd:TIGR02917 834 -----PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--------APEAAAIRYHLALALLATGRKAEARKELDKLL 898
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
26-153 |
1.46e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 1.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 26 EELVRQTRQVVQGLEALRAEHHSLAGHLAEALAGpgpvagVELLEEKQQVVNHSLEAIElglgeaQVLLALSAHVSVLEA 105
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEK------LEELRLEVSELEEEIEELQ------KELYALANEISRLEQ 302
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1039778160 106 EKQRLRAQARRLAQENTWLREELEETQRRLRASEEAVAQLEEEKSHLQ 153
Cdd:TIGR02168 303 QKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
26-153 |
4.62e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 4.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 26 EELVRQTRQVVQGLEALRAEHHSLAGHLAEAlagpgpVAGVELLEEKQQVVNHSLEAIELGLGEAQ-VLLALSAHVSVLE 104
Cdd:COG1196 228 ELLLLKLRELEAELEELEAELEELEAELEEL------EAELAELEAELEELRLELEELELELEEAQaEEYELLAELARLE 301
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1039778160 105 AEKQRLRAQARRLAQENTWLREELEETQRRLRASEEAVAQLEEEKSHLQ 153
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAE 350
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
296-328 |
2.36e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.58 E-value: 2.36e-04
10 20 30
....*....|....*....|....*....|...
gi 1039778160 296 AATLNNLAVLYGKRGRYREAEPLCQRALEIREK 328
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
217-297 |
4.23e-03 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 39.90 E-value: 4.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 217 NLVIQYAGQGRYEVAvpLCRQALEDLERS------SGHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIREQTLGP 290
Cdd:NF040586 736 NLANDLAALGDLDAA--LGEEALERLRRLlgedlrAGPDHPDTLACAANLALDLRATGRTEEAEELRADTLARLRRVLGP 813
|
....*..
gi 1039778160 291 EHPAVAA 297
Cdd:NF040586 814 DHPDTVA 820
|
|
| ZapB |
pfam06005 |
Cell division protein ZapB; ZapB is a non-essential, abundant cell division factor that is ... |
67-147 |
4.49e-03 |
|
Cell division protein ZapB; ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation.
Pssm-ID: 428718 [Multi-domain] Cd Length: 71 Bit Score: 36.09 E-value: 4.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 67 ELLEEKQQVVNHSLEAIELglgeaqvllaLSAHVSVLEAEKQRLRAQARRLAQENTWLREELEETQRRLRAseeAVAQLE 146
Cdd:pfam06005 4 ELLEQLETKIQAAVDTIAL----------LQMENEELKEENEELKEEANELEEENQQLKQERNQWQERIRG---LLGKLD 70
|
.
gi 1039778160 147 E 147
Cdd:pfam06005 71 E 71
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
103-169 |
6.13e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 39.55 E-value: 6.13e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039778160 103 LEAEKQRLRAQARRLAQENTWLREELEETQRRLRASEEAVAQLEEEK----SHLQFLGQLRQYDPPEESQR 169
Cdd:PRK11448 147 LQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQqeleAQLEQLQEKAAETSQERKQK 217
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
209-416 |
1.96e-25 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 105.09 E-value: 1.96e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 209 PARLRTLHNLVIQYAGQGRYEVAVPLCRQALEdlerssghCHPDVATMLNILALVYRDQNKYKEATELLHDALQIreqtl 288
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALE--------LDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 289 gpeHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIRekvlgadhPDVAKQLNNLALLCQNQGKFQDVERHYARALSIy 368
Cdd:COG0457 72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALEL- 139
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1039778160 369 ealggpqDPNVAKTKNNLASAYLKQNKYQQAEELYKEILSQEALPAPL 416
Cdd:COG0457 140 -------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLA 180
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
209-402 |
4.32e-20 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 94.60 E-value: 4.32e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 209 PARLRTLHNLVIQYAGQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIREQTL 288
Cdd:NF040586 517 PRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVL 596
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 289 -GPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLALLCQNQGKFQDVERHYARALSI 367
Cdd:NF040586 597 gGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDR 676
|
170 180 190
....*....|....*....|....*....|....*
gi 1039778160 368 YEALGGPQDPNVAKTKNNLASAYLKQNKYQQAEEL 402
Cdd:NF040586 677 YRRVLGEDHPFTLACRNNLAVLLRALGDPEEAREL 711
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
139-416 |
1.30e-18 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 89.67 E-value: 1.30e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 139 EEAVAQLEEEKSHLQFLGQLRQYDPPEESQRPESPPRRDSLASLFPSEEEEKKGPEAAGAAAAQQGGYEIPARLRTLHNL 218
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 219 VIQ----YAGQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATELLHDALQIreqtlgpeHPA 294
Cdd:COG3914 81 LELaallLQALGRYEEALALYRRALAL--------NPDNAEALFNLGNLLLALGRLEEALAALRRALAL--------NPD 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 295 VAATLNNLAVLYGKRGRYREAEPLCQRALEIRekvlgadhPDVAKQLNNLALLCQNQGKFQDVERHYARALSIyealggp 374
Cdd:COG3914 145 FAEAYLNLGEALRRLGRLEEAIAALRRALELD--------PDNAEALNNLGNALQDLGRLEEAIAAYRRALEL------- 209
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1039778160 375 qDPNVAKTKNNLASAYLKQNKYQQAEELYKEILSQEALPAPL 416
Cdd:COG3914 210 -DPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSEL 250
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
39-407 |
4.71e-18 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 88.05 E-value: 4.71e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 39 LEALRaEHHSLAGHLAEALA--GPGPVAgVELLEEKQQVVNhSLEAIELGLGEAQVL-LALSAHVSVL------EAEKQR 109
Cdd:NF040586 244 LDRLR-ERSPAAARLLELCAffGPEPIP-LDLLRSSDEMAR-LLLPYDLRLRELLLDgILLSRALRELgryalaRVDSGR 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 110 LRAQARRLAQenTWLREELEETQRRlRASEEAvaqleeekshlqfLGQLRQYDPPEESQRPESPPRRDSLAS-LFPSEEE 188
Cdd:NF040586 321 RTLQVHRLVQ--AVLRDRLSEEERA-RARHEV-------------HRILAAAAPGDEPDDPRNWPRYAELWPhLEPSGAL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 189 EKKGPEaagaaaaqqggyeipARlRTLHNLVIQYAGQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQN 268
Cdd:NF040586 385 ESDDPE---------------VR-RLLLDQVRYLYLRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLG 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 269 KYKEATELLHDAL--QIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLAL 346
Cdd:NF040586 449 RYEEARELDEDTLerQRRVLGLGEDHPHTLMTAGGLGADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAV 528
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039778160 347 LCQNQGKFQDVERHYARALSIYEALGGPQDPNVAKTKNNLASAYLKQNKYQQAEELYKEIL 407
Cdd:NF040586 529 SLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEAL 589
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
209-416 |
1.86e-17 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 81.98 E-value: 1.86e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 209 PARLRTLHNLVIQYAGQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATELLHDALQIReqtl 288
Cdd:COG0457 39 PDDAEALYNLGLAYLRLGRYEEALADYEQALEL--------DPDDAEALNNLGLALQALGRYEEALEDYDKALELD---- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 289 gpehPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIRekvlgadhPDVAKQLNNLALLCQNQGKFQDVERHYARALSIY 368
Cdd:COG0457 107 ----PDDAEALYNLGLALLELGRYDEAIEAYERALELD--------PDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1039778160 369 EALGGPQDPNVAKTKNNLASAYLKQNKYQQAEELYKEILSQEALPAPL 416
Cdd:COG0457 175 LAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAEL 222
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
252-328 |
8.22e-17 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 75.12 E-value: 8.22e-17
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039778160 252 DVATMLNILALVYRDQNKYKEATELLHDALQIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREK 328
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
295-370 |
2.29e-16 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 73.96 E-value: 2.29e-16
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039778160 295 VAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLALLCQNQGKFQDVERHYARALSIYEA 370
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
224-421 |
4.29e-16 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 81.89 E-value: 4.29e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 224 GQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIREQTLGPEHPAVAATLNNLA 303
Cdd:NF040586 490 ALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLA 569
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 304 VLYGKRGRYREAEPLCQRALEIREKVL-GADHPDVAKQLNNLALLCQNQGKFQDVERHYARALSIYEALGGPQDPNVAKT 382
Cdd:NF040586 570 RDLRELGRYAEALDLLEEALERYREVLgGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAA 649
|
170 180 190
....*....|....*....|....*....|....*....
gi 1039778160 383 KNNLASAYLKQNKYQQAEELYKEILsqEALPAPLGEPTP 421
Cdd:NF040586 650 ALSLANDLRALGDADEARELAREVL--DRYRRVLGEDHP 686
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
209-345 |
7.96e-16 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 81.12 E-value: 7.96e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 209 PARLRTLHNLVIQYAGQGRYEVAVPLCRQALEDLERSSGHCHPD-VATMLNiLALVYRDQNKYKEATELLHDALQIREQT 287
Cdd:NF040586 602 PDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDtLAAALS-LANDLRALGDADEARELAREVLDRYRRV 680
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1039778160 288 LGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLA 345
Cdd:NF040586 681 LGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHPYTLAAAVNLA 738
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
222-410 |
7.26e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 72.07 E-value: 7.26e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 222 YAGQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATELLHDALQIReqtlgpehPAVAATLNN 301
Cdd:COG2956 52 YRRRGEYDRAIRIHQKLLER--------DPDRAEALLELAQDYLKAGLLDRAEELLEKLLELD--------PDDAEALRL 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 302 LAVLYGKRGRYREAEPLCQRALEIrekvlgadHPDVAKQLNNLALLCQNQGKFQDVERHYARALSIyealggpqDPNVAK 381
Cdd:COG2956 116 LAEIYEQEGDWEKAIEVLERLLKL--------GPENAHAYCELAELYLEQGDYDEAIEALEKALKL--------DPDCAR 179
|
170 180
....*....|....*....|....*....
gi 1039778160 382 TKNNLASAYLKQNKYQQAEELYKEILSQE 410
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERALEQD 208
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
209-416 |
1.13e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 71.30 E-value: 1.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 209 PARLRTLHNLVIQYAGQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATELLHDALQIreqtl 288
Cdd:COG2956 73 PDRAEALLELAQDYLKAGLLDRAEELLEKLLEL--------DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL----- 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 289 gpeHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgadHPDVAKQLNNLALLCQNQGKFQDVERHYARALSiy 368
Cdd:COG2956 140 ---GPENAHAYCELAELYLEQGDYDEAIEALEKALKL--------DPDCARALLLLAELYLEQGDYEEAIAALERALE-- 206
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1039778160 369 ealggpQDPNVAKTKNNLASAYLKQNKYQQAEELYKEILSQEALPAPL 416
Cdd:COG2956 207 ------QDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL 248
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
96-363 |
2.02e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 73.10 E-value: 2.02e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 96 LSAHVSVLEAEKQRLRAQARRLAQENTWLREELEETQRRLRASEEAVAQLEEEKSHLQFLGQLRQYDPPEESQRPESPPR 175
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 176 RDSLASLFpseeeEKKGPEAAGAAAAQQGGYEIPARLRTLHNLVIQYAGQGRYEVAVPLCRQALEdlerssghCHPDVAT 255
Cdd:COG3914 81 LELAALLL-----QALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALA--------LNPDFAE 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 256 MLNILALVYRDQNKYKEATELLHDALQIReqtlgPEHPAVaatLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgadHP 335
Cdd:COG3914 148 AYLNLGEALRRLGRLEEAIAALRRALELD-----PDNAEA---LNNLGNALQDLGRLEEAIAAYRRALEL--------DP 211
|
250 260
....*....|....*....|....*...
gi 1039778160 336 DVAKQLNNLALLCQNQGKFQDVERHYAR 363
Cdd:COG3914 212 DNADAHSNLLFALRQACDWEVYDRFEEL 239
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
295-336 |
3.03e-13 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 64.06 E-value: 3.03e-13
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1039778160 295 VAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPD 336
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
209-390 |
7.85e-13 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 71.49 E-value: 7.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 209 PARLRTLHNLVIQYAGQGRYEVAVPLCRQALEDLERS-SGHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIREQT 287
Cdd:NF040586 559 PRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRR 638
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 288 LGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLALLCQNQGKFQDVERHYARALSI 367
Cdd:NF040586 639 FGPDHPDTLAAALSLANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEG 718
|
170 180
....*....|....*....|...
gi 1039778160 368 YEALGGPQDPNVAKTKNNLASAY 390
Cdd:NF040586 719 LRERLGPDHPYTLAAAVNLANDL 741
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
336-407 |
6.11e-12 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 61.25 E-value: 6.11e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039778160 336 DVAKQLNNLALLCQNQGKFQDVERHYARALSIYEALGGPQDPNVAKTKNNLASAYLKQNKYQQAEELYKEIL 407
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERAL 72
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
210-368 |
1.98e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 61.75 E-value: 1.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 210 ARLRTLHNLVIQYAGQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATELLHDALQIreqtlg 289
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALEL--------DPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL------ 67
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039778160 290 peHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEirekvLGADHPDVakqLNNLALLCQNQGKFQDVERHYARALSIY 368
Cdd:COG4783 68 --DPDEPEARLNLGLALLKAGDYDEALALLEKALK-----LDPEHPEA---YLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
259-407 |
2.04e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 64.75 E-value: 2.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 259 ILALVYRDQNKYKEATELLHDALQIreqtlgpeHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgadHPDVA 338
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALEL--------DPETVEAHLALGNLYRRRGEYDRAIRIHQKLLER--------DPDRA 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039778160 339 KQLNNLALLCQNQGKFQDVERHYARALSIyealggpqDPNVAKTKNNLASAYLKQNKYQQAEELYKEIL 407
Cdd:COG2956 77 EALLELAQDYLKAGLLDRAEELLEKLLEL--------DPDDAEALRLLAEIYEQEGDWEKAIEVLERLL 137
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
209-401 |
9.90e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 62.33 E-value: 9.90e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 209 PARLRTLHNLVIQYAGQGRYEVAVPLCRQALEdlerssghCHPDVATMLNILALVYRDQNKYKEATELLHDALQIReqtl 288
Cdd:COG0457 73 PDDAEALNNLGLALQALGRYEEALEDYDKALE--------LDPDDAEALYNLGLALLELGRYDEAIEAYERALELD---- 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 289 gpehPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREkvlgADHPDVAKQLNNLALLCQNQGKFQDVERHYARALSIY 368
Cdd:COG0457 141 ----PDDADALYNLGIALEKLGRYEEALELLEKLEAAAL----AALLAAALGEAALALAAAEVLLALLLALEQALRKKLA 212
|
170 180 190
....*....|....*....|....*....|...
gi 1039778160 369 EALGGPQDPNVAKTKNNLASAYLKQNKYQQAEE 401
Cdd:COG0457 213 ILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
211-286 |
3.69e-10 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 56.24 E-value: 3.69e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039778160 211 RLRTLHNLVIQYAGQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIREQ 286
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
260-411 |
3.90e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 58.28 E-value: 3.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 260 LALVYRDQNKYKEATELLHDALQireqtlgpEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgadHPDVAK 339
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALE--------LDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL--------DPDEPE 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039778160 340 QLNNLALLCQNQGKFQDVERHYARALSiyealggpQDPNVAKTKNNLASAYLKQNKYQQAEELYKEILSQEA 411
Cdd:COG4783 74 ARLNLGLALLKAGDYDEALALLEKALK--------LDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
253-293 |
4.84e-10 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 54.82 E-value: 4.84e-10
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1039778160 253 VATMLNILALVYRDQNKYKEATELLHDALQIREQTLGPEHP 293
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHP 41
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
305-411 |
1.86e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.79 E-value: 1.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 305 LYGKRGRYREAEPLCQRALEIrekvlgadHPDVAKQLNNLALLCQNQGKFQDVERhYARALSIyealggpqDPNVAKTKN 384
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIA-LEKALKL--------DPNNAEALL 63
|
90 100
....*....|....*....|....*..
gi 1039778160 385 NLASAYLKQNKYQQAEELYKEILSQEA 411
Cdd:COG3063 64 NLAELLLELGDYDEALAYLERALELDP 90
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
254-412 |
5.57e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 55.35 E-value: 5.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 254 ATMLNILALVYRDQNKYKEATELLHDALQIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgad 333
Cdd:COG5010 12 LYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL-------- 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039778160 334 HPDVAKQLNNLALLCQNQGKFQDVERHYARALSIyealggpqDPNVAKTKNNLASAYLKQNKYQQAEELYKEILSQEAL 412
Cdd:COG5010 84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL--------SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPL 154
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
217-337 |
5.64e-09 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 59.16 E-value: 5.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 217 NLVIQYAGQGRYEVAVPLCRQALEDLERSSGHCHP-DVATMLN---ILALVYRDQNKYKEATELLHDALQIREQTLGPEH 292
Cdd:NF040586 694 NLAVLLRALGDPEEARELAEAALEGLRERLGPDHPyTLAAAVNlanDLAALGDLDAALGEEALERLRRLLGEDLRAGPDH 773
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1039778160 293 PAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDV 337
Cdd:NF040586 774 PDTLACAANLALDLRATGRTEEAEELRADTLARLRRVLGPDHPDT 818
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
263-371 |
7.89e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 53.25 E-value: 7.89e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 263 VYRDQNKYKEATELLHDALQIreqtlgpeHPAVAATLNNLAVLYGKRGRYREAEPLcQRALEIrekvlgadHPDVAKQLN 342
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALL 63
|
90 100
....*....|....*....|....*....
gi 1039778160 343 NLALLCQNQGKFQDVERHYARALSIYEAL 371
Cdd:COG3063 64 NLAELLLELGDYDEALAYLERALELDPSA 92
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
250-408 |
1.23e-08 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 55.69 E-value: 1.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 250 HPDVATMLNILALVYRDQNKYKEATELLHDALQIReqtlgpehPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIRekv 329
Cdd:COG4785 69 LPDLAQLYYERGVAYDSLGDYDLAIADFDQALELD--------PDLAEAYNNRGLAYLLLGDYDAALEDFDRALELD--- 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 330 lgadhPDVAKQLNNLALLCQNQGKFQDVERHYARALSIYealggPQDP-------------NVAKTKNNL----ASAYLK 392
Cdd:COG4785 138 -----PDYAYAYLNRGIALYYLGRYELAIADLEKALELD-----PNDPeralwlylaerklDPEKALALLledwATAYLL 207
|
170
....*....|....*.
gi 1039778160 393 QNKYQQAEELYKEILS 408
Cdd:COG4785 208 QGDTEEARELFKLALA 223
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
222-330 |
1.43e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 52.48 E-value: 1.43e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 222 YAGQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATELlHDALQIreqtlgpeHPAVAATLNN 301
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALLN 64
|
90 100
....*....|....*....|....*....
gi 1039778160 302 LAVLYGKRGRYREAEPLCQRALEIREKVL 330
Cdd:COG3063 65 LAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
272-409 |
2.28e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 52.70 E-value: 2.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 272 EATELLHDALQireqtlgpEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIRekvlgadhPDVAKQLNNLALLCQNQ 351
Cdd:COG4235 1 EAIARLRQALA--------ANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD--------PDNADALLDLAEALLAA 64
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1039778160 352 GKFQDVERHYARALSIyealggpqDPNVAKTKNNLASAYLKQNKYQQAEELYKEILSQ 409
Cdd:COG4235 65 GDTEEAEELLERALAL--------DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
294-410 |
1.22e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 50.96 E-value: 1.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 294 AVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgadHPDVAKQLNNLALLCQNQGKFQDVERHYARALSIyealgg 373
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALEL--------DPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL------ 67
|
90 100 110
....*....|....*....|....*....|....*..
gi 1039778160 374 pqDPNVAKTKNNLASAYLKQNKYQQAEELYKEILSQE 410
Cdd:COG4783 68 --DPDEPEARLNLGLALLKAGDYDEALALLEKALKLD 102
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
209-367 |
3.20e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 50.34 E-value: 3.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 209 PARLRTLHNLVIQYAGQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIreqtl 288
Cdd:COG5010 9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL----- 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039778160 289 gpeHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgadHPDVAKQLNNLALLCQNQGKFQDVERHYARALSI 367
Cdd:COG5010 84 ---DPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL--------SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
250-407 |
6.94e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 52.39 E-value: 6.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 250 HPDVATMLNILALVYRDQNKYKEATELLHDALQIreqtlgpeHPAVAATLNNLAVLYGKRGRYReAEPLCQRALEIRekv 329
Cdd:TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKK--------APDNAVVLNNLAWLYLELKDPR-ALEYAERALKLA--- 833
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039778160 330 lgadhPDVAKQLNNLALLCQNQGKFQDVERHYARALSIyealggpqDPNVAKTKNNLASAYLKQNKYQQAEELYKEIL 407
Cdd:TIGR02917 834 -----PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--------APEAAAIRYHLALALLATGRKAEARKELDKLL 898
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
260-389 |
1.46e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 47.69 E-value: 1.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 260 LALVYRDQNKYKEATELLHDALQIReqtlgPEHPAVaatLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgadHPDVAK 339
Cdd:COG4235 23 LGRAYLRLGRYDEALAAYEKALRLD-----PDNADA---LLDLAEALLAAGDTEEAEELLERALAL--------DPDNPE 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1039778160 340 QLNNLALLCQNQGKFQDVERHYARALSIyealgGPQDPNVAKTKNNLASA 389
Cdd:COG4235 87 ALYLLGLAAFQQGDYAEAIAAWQKLLAL-----LPADAPARLLEASIAEA 131
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
260-407 |
2.28e-06 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 48.87 E-value: 2.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 260 LALVYRDQNKYKEATELLHDALQIReqtlgpehPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgadHPDVAK 339
Cdd:TIGR02521 37 LALGYLEQGDLEVAKENLDKALEHD--------PDDYLAYLALALYYQQLGELEKAEDSFRRALTL--------NPNNGD 100
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039778160 340 QLNNL-ALLCQnQGKFQDVERHYARALSiyealgGPQDPNVAKTKNNLASAYLKQNKYQQAEELYKEIL 407
Cdd:TIGR02521 101 VLNNYgTFLCQ-QGKYEQAMQQFEQAIE------DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRAL 162
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
260-401 |
2.81e-06 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 48.76 E-value: 2.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 260 LALVYRDQNKYKEATELLHDALQIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIRekvlgadhPDVAK 339
Cdd:COG4785 37 LAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELD--------PDLAE 108
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039778160 340 QLNNLALLCQNQGKFQDVERHYARALSIyealggpqDPNVAKTKNNLASAYLKQNKYQQAEE 401
Cdd:COG4785 109 AYNNRGLAYLLLGDYDAALEDFDRALEL--------DPDYAYAYLNRGIALYYLGRYELAIA 162
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
308-409 |
4.82e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 45.75 E-value: 4.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 308 KRGRYREAEPLCQRALEirekvLGADHPDVAKQLNNLALLCQNQGKFQDVERHYARALSIYealggPQDPNVAKTKNNLA 387
Cdd:COG1729 5 KAGDYDEAIAAFKAFLK-----RYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRY-----PDSPKAPDALLKLG 74
|
90 100
....*....|....*....|..
gi 1039778160 388 SAYLKQNKYQQAEELYKEILSQ 409
Cdd:COG1729 75 LSYLELGDYDKARATLEELIKK 96
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
209-325 |
6.30e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 45.95 E-value: 6.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 209 PARLRTLHNLVIQYAGQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATELLHDALQireqtL 288
Cdd:COG4783 35 PDNPEAFALLGEILLQLGDLDEAIVLLHEALEL--------DPDEPEARLNLGLALLKAGDYDEALALLEKALK-----L 101
|
90 100 110
....*....|....*....|....*....|....*..
gi 1039778160 289 GPEHPAVaatLNNLAVLYGKRGRYREAEPLCQRALEI 325
Cdd:COG4783 102 DPEHPEA---YLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
209-325 |
1.05e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.00 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 209 PARLRTLHNLVIQYAGQGRYEVAVPLCRQALEDLerssghchPDVATMLNILALVYRDQNKYKEATELLHDALQireqtL 288
Cdd:COG4235 14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD--------PDNADALLDLAEALLAAGDTEEAEELLERALA-----L 80
|
90 100 110
....*....|....*....|....*....|....*..
gi 1039778160 289 GPEHPAVaatLNNLAVLYGKRGRYREAEPLCQRALEI 325
Cdd:COG4235 81 DPDNPEA---LYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
26-153 |
1.46e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 1.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 26 EELVRQTRQVVQGLEALRAEHHSLAGHLAEALAGpgpvagVELLEEKQQVVNHSLEAIElglgeaQVLLALSAHVSVLEA 105
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEK------LEELRLEVSELEEEIEELQ------KELYALANEISRLEQ 302
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1039778160 106 EKQRLRAQARRLAQENTWLREELEETQRRLRASEEAVAQLEEEKSHLQ 153
Cdd:TIGR02168 303 QKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
26-153 |
4.62e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 4.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 26 EELVRQTRQVVQGLEALRAEHHSLAGHLAEAlagpgpVAGVELLEEKQQVVNHSLEAIELGLGEAQ-VLLALSAHVSVLE 104
Cdd:COG1196 228 ELLLLKLRELEAELEELEAELEELEAELEEL------EAELAELEAELEELRLELEELELELEEAQaEEYELLAELARLE 301
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1039778160 105 AEKQRLRAQARRLAQENTWLREELEETQRRLRASEEAVAQLEEEKSHLQ 153
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAE 350
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
296-328 |
5.90e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 40.10 E-value: 5.90e-05
10 20 30
....*....|....*....|....*....|...
gi 1039778160 296 AATLNNLAVLYGKRGRYREAEPLCQRALEIREK 328
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
320-410 |
1.20e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 42.30 E-value: 1.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 320 QRALEIREKVlgADHPDVAKQLNNLALLCQNQGKFQDVERHYARALSIyealggpqDPNVAKTKNNLASAYLKQNKYQQA 399
Cdd:COG4235 1 EAIARLRQAL--AANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRL--------DPDNADALLDLAEALLAAGDTEEA 70
|
90
....*....|.
gi 1039778160 400 EELYKEILSQE 410
Cdd:COG4235 71 EELLERALALD 81
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
298-333 |
1.46e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 39.06 E-value: 1.46e-04
10 20 30
....*....|....*....|....*....|....*.
gi 1039778160 298 TLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGAD 333
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
209-326 |
1.82e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 43.56 E-value: 1.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 209 PARLRTLHNLVIQYAGQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATELLHDALQireqtl 288
Cdd:COG2956 175 PDCARALLLLAELYLEQGDYEEAIAALERALEQ--------DPDYLPALPRLAELYEKLGDPEEALELLRKALE------ 240
|
90 100 110
....*....|....*....|....*....|....*...
gi 1039778160 289 gpEHPAVAAtLNNLAVLYGKRGRYREAEPLCQRALEIR 326
Cdd:COG2956 241 --LDPSDDL-LLALADLLERKEGLEAALALLERQLRRH 275
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
296-328 |
2.36e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.58 E-value: 2.36e-04
10 20 30
....*....|....*....|....*....|...
gi 1039778160 296 AATLNNLAVLYGKRGRYREAEPLCQRALEIREK 328
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
209-364 |
2.51e-04 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 43.45 E-value: 2.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 209 PARLRTLHNLVIQYAGQGRYEVAVPLCRQAlEDLERSSGHCHPDVATMLnILALVYRDQNKYKEATELLHDALQIREQTL 288
Cdd:pfam17874 37 LARGLATFVLGEAYLCLGDLDAALQAMREA-EALARRADSPHVTLWALL-QQGEILRAQGRLHQALETYQQALQLARDHG 114
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039778160 289 GPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVlgadHPDVAKQLN-NLALLCQNQGKFQDVERHYARA 364
Cdd:pfam17874 115 LQHLPLHGFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQW----EPDAAVDAYvLLARIALAQGELEEALTLLRRA 187
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
294-411 |
2.62e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 43.18 E-value: 2.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 294 AVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgadHPDVAKQLNNLALLCQNQGKFQDVERHYARALSiyealgg 373
Cdd:COG2956 6 AAALGWYFKGLNYLLNGQPDKAIDLLEEALEL--------DPETVEAHLALGNLYRRRGEYDRAIRIHQKLLE------- 70
|
90 100 110
....*....|....*....|....*....|....*...
gi 1039778160 374 pQDPNVAKTKNNLASAYLKQNKYQQAEELYKEILSQEA 411
Cdd:COG2956 71 -RDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDP 107
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
264-389 |
5.46e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.97 E-value: 5.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 264 YRDQNKYKEATELLHDALQireqtLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEirekvLGADHPDVAKQLNN 343
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLK-----RYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLK-----RYPDSPKAPDALLK 72
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1039778160 344 LALLCQNQGKFQDVERHYARALSIYealggPQDPNVAKTKNNLASA 389
Cdd:COG1729 73 LGLSYLELGDYDKARATLEELIKKY-----PDSEAAKEARARLARL 113
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
26-153 |
5.97e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.00 E-value: 5.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 26 EELVRQTRQVVQGLEALRAEHHSLAghlaealagpgpvagvELLEEKQQVVNHSLEAIELGLGEAQVLLALSAHvsvLEA 105
Cdd:COG1196 256 EELEAELAELEAELEELRLELEELE----------------LELEEAQAEEYELLAELARLEQDIARLEERRRE---LEE 316
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1039778160 106 EKQRLRAQARRLAQENTWLREELEETQRRLRASEEAVAQLEEEKSHLQ 153
Cdd:COG1196 317 RLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE 364
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
26-153 |
6.96e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 6.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 26 EELVRQTRQVVQgLEALRAEHHSLAGHLAEALAGPGpVAGVELLEEKQQVVNHSLEAIELGLGEAQVLLA-----LSAHV 100
Cdd:COG4913 302 AELARLEAELER-LEARLDALREELDELEAQIRGNG-GDRLEQLEREIERLERELEERERRRARLEALLAalglpLPASA 379
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1039778160 101 SVLEAEKQRLRAQARRLAQENTWLREELEETQRRLRASEEAVAQLEEEKSHLQ 153
Cdd:COG4913 380 EEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
337-378 |
1.07e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 37.10 E-value: 1.07e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1039778160 337 VAKQLNNLALLCQNQGKFQDVERHYARALSIYEALGGPQDPN 378
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
212-252 |
1.08e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 36.71 E-value: 1.08e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1039778160 212 LRTLHNLVIQYAGQGRYEVAVPLCRQALEDLERSSGHCHPD 252
Cdd:pfam13374 2 ASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
297-407 |
1.36e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 40.67 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 297 ATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLALLCQNQGKFQDVERHYARALSIyealggpqD 376
Cdd:COG4785 32 AAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALEL--------D 103
|
90 100 110
....*....|....*....|....*....|.
gi 1039778160 377 PNVAKTKNNLASAYLKQNKYQQAEELYKEIL 407
Cdd:COG4785 104 PDLAEAYNNRGLAYLLLGDYDAALEDFDRAL 134
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
380-408 |
1.38e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.24 E-value: 1.38e-03
10 20
....*....|....*....|....*....
gi 1039778160 380 AKTKNNLASAYLKQNKYQQAEELYKEILS 408
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALE 29
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
221-409 |
2.32e-03 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 40.37 E-value: 2.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 221 QYAGQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIREQtlGPEHPAVAATLN 300
Cdd:pfam17874 89 ILRAQGRLHQALETYQQALQLARDHGLQHLPLHGFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQ--WEPDAAVDAYVL 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 301 nLAVLYGKRGRYREAEPLCQRALEI--REKVLGADHPDVAKQLNNLALLCQNQGKFQDVERHYARALSIYEALggpqdpn 378
Cdd:pfam17874 167 -LARIALAQGELEEALTLLRRAELLarQSFFHVDWLANAERVRVRLWLARGDLRAAVRWLRAAEPPSDADNHF------- 238
|
170 180 190
....*....|....*....|....*....|.
gi 1039778160 379 VAKTKNNLASAYLKQNKYQQAEELYKEILSQ 409
Cdd:pfam17874 239 LERELRNLARVLLALGRFDDALSLLERLQNL 269
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
380-410 |
3.46e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.11 E-value: 3.46e-03
10 20 30
....*....|....*....|....*....|.
gi 1039778160 380 AKTKNNLASAYLKQNKYQQAEELYKEILSQE 410
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELD 31
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
39-153 |
3.56e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 3.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 39 LEALRAEHHSLAGHLAEALagpgpvAGVELLEEKQQVVNHSLEAIE--LGLGEAQV-LLALSAHVSVLEAEKQRLRAQAR 115
Cdd:COG4913 612 LAALEAELAELEEELAEAE------ERLEALEAELDALQERREALQrlAEYSWDEIdVASAEREIAELEAELERLDASSD 685
|
90 100 110
....*....|....*....|....*....|....*...
gi 1039778160 116 RLAQentwLREELEETQRRLRASEEAVAQLEEEKSHLQ 153
Cdd:COG4913 686 DLAA----LEEQLEELEAELEELEEELDELKGEIGRLE 719
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
217-297 |
4.23e-03 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 39.90 E-value: 4.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 217 NLVIQYAGQGRYEVAvpLCRQALEDLERS------SGHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIREQTLGP 290
Cdd:NF040586 736 NLANDLAALGDLDAA--LGEEALERLRRLlgedlrAGPDHPDTLACAANLALDLRATGRTEEAEELRADTLARLRRVLGP 813
|
....*..
gi 1039778160 291 EHPAVAA 297
Cdd:NF040586 814 DHPDTVA 820
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
26-155 |
4.26e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 4.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 26 EELVRQTRQVVQGLEALRAEHHSLAGHLAEALAGPGPVAGVELLEEKqqvvnhsLEAIELGLGEaqvLLALSAHVSVLEA 105
Cdd:COG4913 630 EERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAE-------LERLDASSDD---LAALEEQLEELEA 699
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1039778160 106 EKQRLRAQARRLAQENTWLREELEETQRRLRASEEAVAQLEEEKSHLQFL 155
Cdd:COG4913 700 ELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA 749
|
|
| ZapB |
pfam06005 |
Cell division protein ZapB; ZapB is a non-essential, abundant cell division factor that is ... |
67-147 |
4.49e-03 |
|
Cell division protein ZapB; ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation.
Pssm-ID: 428718 [Multi-domain] Cd Length: 71 Bit Score: 36.09 E-value: 4.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 67 ELLEEKQQVVNHSLEAIELglgeaqvllaLSAHVSVLEAEKQRLRAQARRLAQENTWLREELEETQRRLRAseeAVAQLE 146
Cdd:pfam06005 4 ELLEQLETKIQAAVDTIAL----------LQMENEELKEENEELKEEANELEEENQQLKQERNQWQERIRG---LLGKLD 70
|
.
gi 1039778160 147 E 147
Cdd:pfam06005 71 E 71
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
39-153 |
4.82e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 39.92 E-value: 4.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 39 LEALRAEHHSLAGHLAEALAgpgpvAGVELLEEKQQVVNHSLEAIELGLGEAQVLLALSAHVSVLEAEKQRLRAQARRLA 118
Cdd:COG1196 353 LEEAEAELAEAEEALLEAEA-----ELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
|
90 100 110
....*....|....*....|....*....|....*
gi 1039778160 119 QENTWLREELEETQRRLRASEEAVAQLEEEKSHLQ 153
Cdd:COG1196 428 EALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
103-169 |
6.13e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 39.55 E-value: 6.13e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039778160 103 LEAEKQRLRAQARRLAQENTWLREELEETQRRLRASEEAVAQLEEEK----SHLQFLGQLRQYDPPEESQR 169
Cdd:PRK11448 147 LQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQqeleAQLEQLQEKAAETSQERKQK 217
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
379-408 |
7.43e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 34.40 E-value: 7.43e-03
10 20 30
....*....|....*....|....*....|
gi 1039778160 379 VAKTKNNLASAYLKQNKYQQAEELYKEILS 408
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALA 30
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
209-288 |
8.62e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 35.92 E-value: 8.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778160 209 PARLRTLHNLVIQYAGQGRYEVAVPLcRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATELLHDALQIREQTL 288
Cdd:COG3063 23 PDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALLNLAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| |
