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Conserved domains on  [gi|1207162028|ref|XP_021324977|]
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RGM domain family, member D isoform X1 [Danio rerio]

Protein Classification

repulsive guidance molecule family protein( domain architecture ID 10534812)

repulsive guidance molecule (RGM) family protein may have several functions in the developing and adult nervous system, including regulation of cephalic neural tube closure, inhibition of neurite outgrowth and cortical neuron branching, and the formation of mature synapses

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RGM_N pfam06535
Repulsive guidance molecule (RGM) N-terminus; This family consists of the N-terminal region of ...
 85-256 1.70e-97

Repulsive guidance molecule (RGM) N-terminus; This family consists of the N-terminal region of several mammalian and one bird sequence from Gallus gallus (Chicken). All of the mammalian proteins are hypothetical and have no known function but Swiss:Q8JG54 from the chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum.


:

Pssm-ID: 461940  Cd Length: 165  Bit Score: 290.41  E-value: 1.70e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207162028  85 CRIQRCNAEYVASFSPSGGLQEevhPDVDYCIALRAYSLCTRRTARACRGDLVYHSAVFRIKELFAQHNCSSDGPTSSAK 164
Cdd:pfam06535   1 CKILKCNSEYVAATSALGGGPE---PNEAYCSALRSYALCTRRTARTCRGDLAYHSAVHGIEDLMKQHNCSKVGPTSPPR 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207162028 165 APSTSKPTVVDVCNYESRVLASGPAaqqkKYGHCGLFGDPHLRTFRDEFQTCRVEGAWPLIHNRYLSVQVTNVPVVEGSS 244
Cdd:pfam06535  78 PRSPPASPSPDICTYEGRFSKGKPP----EYRHCGLFGDPHLRTFNDEFQTCKVEGAWPLIDNPYLSVQVTNSPVVPGSL 153

                         170
                  ....*....|..
gi 1207162028 245 ATATNKITVIFK 256
Cdd:pfam06535 154 ATATTKLTVIFK 165
RGM_C pfam06534
Repulsive guidance molecule (RGM) C-terminus; This family consists of several mammalian and ...
 261-444 5.57e-89

Repulsive guidance molecule (RGM) C-terminus; This family consists of several mammalian and one bird sequence from Gallus gallus (Chicken). This family represents the C-terminal region of several sequences but in others it represents the full protein. All of the mammalian proteins are hypothetical and have no known function but Swiss:Q8JG54 from the chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum.


:

Pssm-ID: 461939  Cd Length: 171  Bit Score: 269.11  E-value: 5.57e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207162028 261 CTEQKVYQATTEDLPSAFQDGTRSGGKGE---SLWIVEGSGGlgiRQVKIHARYLGTSIIVRQVGRYLTFAIRMPEDLA- 336
Cdd:pfam06534   1 CTDQKVYQAETDDLPAAFVDGTTNGGDRDggnSLRILEKEPG---RHVEIHARYIGTTIIVRQVGRYLTFAIRMPEEVAn 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207162028 337 --EENGGLQLCLHGCPRSEVIKAHVLNRQQSLRPPrlmggwygeddggevkSGLSSHIDMLERATTKCREMLQVEDVYFQ 414
Cdd:pfam06534  78 alEEDQDLQLCVNGCPRSERIDYRTLLAEPVKRTA----------------CYQPRVAFTLESATAKCRESLPVEDVYFQ 141

                         170       180       190
                  ....*....|....*....|....*....|
gi 1207162028 415 SCVFDLLTTGDPEFSMAAYGALEDLKALPP 444
Cdd:pfam06534 142 SCVFDLLTTGDANFTLAAYSALEDVKRLHP 171
 
Name Accession Description Interval E-value
RGM_N pfam06535
Repulsive guidance molecule (RGM) N-terminus; This family consists of the N-terminal region of ...
 85-256 1.70e-97

Repulsive guidance molecule (RGM) N-terminus; This family consists of the N-terminal region of several mammalian and one bird sequence from Gallus gallus (Chicken). All of the mammalian proteins are hypothetical and have no known function but Swiss:Q8JG54 from the chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum.


Pssm-ID: 461940  Cd Length: 165  Bit Score: 290.41  E-value: 1.70e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207162028  85 CRIQRCNAEYVASFSPSGGLQEevhPDVDYCIALRAYSLCTRRTARACRGDLVYHSAVFRIKELFAQHNCSSDGPTSSAK 164
Cdd:pfam06535   1 CKILKCNSEYVAATSALGGGPE---PNEAYCSALRSYALCTRRTARTCRGDLAYHSAVHGIEDLMKQHNCSKVGPTSPPR 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207162028 165 APSTSKPTVVDVCNYESRVLASGPAaqqkKYGHCGLFGDPHLRTFRDEFQTCRVEGAWPLIHNRYLSVQVTNVPVVEGSS 244
Cdd:pfam06535  78 PRSPPASPSPDICTYEGRFSKGKPP----EYRHCGLFGDPHLRTFNDEFQTCKVEGAWPLIDNPYLSVQVTNSPVVPGSL 153

                         170
                  ....*....|..
gi 1207162028 245 ATATNKITVIFK 256
Cdd:pfam06535 154 ATATTKLTVIFK 165
RGM_C pfam06534
Repulsive guidance molecule (RGM) C-terminus; This family consists of several mammalian and ...
 261-444 5.57e-89

Repulsive guidance molecule (RGM) C-terminus; This family consists of several mammalian and one bird sequence from Gallus gallus (Chicken). This family represents the C-terminal region of several sequences but in others it represents the full protein. All of the mammalian proteins are hypothetical and have no known function but Swiss:Q8JG54 from the chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum.


Pssm-ID: 461939  Cd Length: 171  Bit Score: 269.11  E-value: 5.57e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207162028 261 CTEQKVYQATTEDLPSAFQDGTRSGGKGE---SLWIVEGSGGlgiRQVKIHARYLGTSIIVRQVGRYLTFAIRMPEDLA- 336
Cdd:pfam06534   1 CTDQKVYQAETDDLPAAFVDGTTNGGDRDggnSLRILEKEPG---RHVEIHARYIGTTIIVRQVGRYLTFAIRMPEEVAn 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207162028 337 --EENGGLQLCLHGCPRSEVIKAHVLNRQQSLRPPrlmggwygeddggevkSGLSSHIDMLERATTKCREMLQVEDVYFQ 414
Cdd:pfam06534  78 alEEDQDLQLCVNGCPRSERIDYRTLLAEPVKRTA----------------CYQPRVAFTLESATAKCRESLPVEDVYFQ 141

                         170       180       190
                  ....*....|....*....|....*....|
gi 1207162028 415 SCVFDLLTTGDPEFSMAAYGALEDLKALPP 444
Cdd:pfam06534 142 SCVFDLLTTGDANFTLAAYSALEDVKRLHP 171
 
Name Accession Description Interval E-value
RGM_N pfam06535
Repulsive guidance molecule (RGM) N-terminus; This family consists of the N-terminal region of ...
 85-256 1.70e-97

Repulsive guidance molecule (RGM) N-terminus; This family consists of the N-terminal region of several mammalian and one bird sequence from Gallus gallus (Chicken). All of the mammalian proteins are hypothetical and have no known function but Swiss:Q8JG54 from the chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum.


Pssm-ID: 461940  Cd Length: 165  Bit Score: 290.41  E-value: 1.70e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207162028  85 CRIQRCNAEYVASFSPSGGLQEevhPDVDYCIALRAYSLCTRRTARACRGDLVYHSAVFRIKELFAQHNCSSDGPTSSAK 164
Cdd:pfam06535   1 CKILKCNSEYVAATSALGGGPE---PNEAYCSALRSYALCTRRTARTCRGDLAYHSAVHGIEDLMKQHNCSKVGPTSPPR 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207162028 165 APSTSKPTVVDVCNYESRVLASGPAaqqkKYGHCGLFGDPHLRTFRDEFQTCRVEGAWPLIHNRYLSVQVTNVPVVEGSS 244
Cdd:pfam06535  78 PRSPPASPSPDICTYEGRFSKGKPP----EYRHCGLFGDPHLRTFNDEFQTCKVEGAWPLIDNPYLSVQVTNSPVVPGSL 153

                         170
                  ....*....|..
gi 1207162028 245 ATATNKITVIFK 256
Cdd:pfam06535 154 ATATTKLTVIFK 165
RGM_C pfam06534
Repulsive guidance molecule (RGM) C-terminus; This family consists of several mammalian and ...
 261-444 5.57e-89

Repulsive guidance molecule (RGM) C-terminus; This family consists of several mammalian and one bird sequence from Gallus gallus (Chicken). This family represents the C-terminal region of several sequences but in others it represents the full protein. All of the mammalian proteins are hypothetical and have no known function but Swiss:Q8JG54 from the chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum.


Pssm-ID: 461939  Cd Length: 171  Bit Score: 269.11  E-value: 5.57e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207162028 261 CTEQKVYQATTEDLPSAFQDGTRSGGKGE---SLWIVEGSGGlgiRQVKIHARYLGTSIIVRQVGRYLTFAIRMPEDLA- 336
Cdd:pfam06534   1 CTDQKVYQAETDDLPAAFVDGTTNGGDRDggnSLRILEKEPG---RHVEIHARYIGTTIIVRQVGRYLTFAIRMPEEVAn 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207162028 337 --EENGGLQLCLHGCPRSEVIKAHVLNRQQSLRPPrlmggwygeddggevkSGLSSHIDMLERATTKCREMLQVEDVYFQ 414
Cdd:pfam06534  78 alEEDQDLQLCVNGCPRSERIDYRTLLAEPVKRTA----------------CYQPRVAFTLESATAKCRESLPVEDVYFQ 141

                         170       180       190
                  ....*....|....*....|....*....|
gi 1207162028 415 SCVFDLLTTGDPEFSMAAYGALEDLKALPP 444
Cdd:pfam06534 142 SCVFDLLTTGDANFTLAAYSALEDVKRLHP 171
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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