|
Name |
Accession |
Description |
Interval |
E-value |
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
232-534 |
7.43e-16 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 79.57 E-value: 7.43e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370454560 232 WSIKNPMWPERIYQSPYGVTAVDFSigaPN--LLAVGYHNGTIAIYNVRSNSNVPVLdssespQKHLGPVWQLQWieqdr 309
Cdd:COG2319 105 WDLATGLLLRTLTGHTGAVRSVAFS---PDgkTLASGSADGTVRLWDLATGKLLRTL------TGHSGAVTSVAF----- 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370454560 310 gtTGDGKReiLVSISADGRISKWVIRKGldcydlmRLKRTtaasnkkggekekkdeaLISRQAPGMCFAFHPkDTNIYLA 389
Cdd:COG2319 171 --SPDGKL--LASGSDDGTVRLWDLATG-------KLLRT-----------------LTGHTGAVRSVAFSP-DGKLLAS 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370454560 390 GTEEGHIHKCSCSyNEQYLDTYRGHKGPVYKVTWNPfchD--VFLSCSADWGVIIWQQENVKPSLSFYPATSVVYDVAWS 467
Cdd:COG2319 222 GSADGTVRLWDLA-TGKLLRTLTGHSGSVRSVAFSP---DgrLLASGSADGTVRLWDLATGELLRTLTGHSGGVNSVAFS 297
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1370454560 468 PKSSYIFAAANENRVEIWDLhiSTLDPLIVNTANPGiKFTTILFAKQTDCLLVGDSDGQVSVYELRN 534
Cdd:COG2319 298 PDGKLLASGSDDGTVRLWDL--ATGKLLRTLTGHTG-AVRSVAFSPDGKTLASGSDDGTVRLWDLAT 361
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
204-486 |
1.04e-14 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 74.68 E-value: 1.04e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370454560 204 WNKTNPDLLAVGYGHFGFKE------QKRGLACC--------WSIKNPMWPERIYQSPYGVTAVDFSiGAPNLLAVGYHN 269
Cdd:cd00200 36 WDLETGELLRTLKGHTGPVRdvaasaDGTYLASGssdktirlWDLETGECVRTLTGHTSYVSSVAFS-PDGRILSSSSRD 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370454560 270 GTIAIYNVRSNSNVPVLDSsespqkHLGPVWQLQWIEQDRgttgdgkreILVSISADGRISKWVIRKGldcydlmRLKRT 349
Cdd:cd00200 115 KTIKVWDVETGKCLTTLRG------HTDWVNSVAFSPDGT---------FVASSSQDGTIKLWDLRTG-------KCVAT 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370454560 350 taasnkkggekekkdeaLISRQAPGMCFAFHPkDTNIYLAGTEEGHIhKCSCSYNEQYLDTYRGHKGPVYKVTWNPfCHD 429
Cdd:cd00200 173 -----------------LTGHTGEVNSVAFSP-DGEKLLSSSSDGTI-KLWDLSTGKCLGTLRGHENGVNSVAFSP-DGY 232
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1370454560 430 VFLSCSADWGVIIWQQENVKPSLSFYPATSVVYDVAWSPKSSYIFAAANENRVEIWD 486
Cdd:cd00200 233 LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
404-443 |
4.01e-04 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 38.06 E-value: 4.01e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1370454560 404 NEQYLDTYRGHKGPVYKVTWNPfCHDVFLSCSADWGVIIW 443
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLW 39
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
406-443 |
3.65e-03 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 35.40 E-value: 3.65e-03
10 20 30
....*....|....*....|....*....|....*...
gi 1370454560 406 QYLDTYRGHKGPVYKVTWNPfCHDVFLSCSADWGVIIW 443
Cdd:pfam00400 2 KLLKTLEGHTGSVTSLAFSP-DGKLLASGSDDGTVKVW 38
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
232-534 |
7.43e-16 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 79.57 E-value: 7.43e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370454560 232 WSIKNPMWPERIYQSPYGVTAVDFSigaPN--LLAVGYHNGTIAIYNVRSNSNVPVLdssespQKHLGPVWQLQWieqdr 309
Cdd:COG2319 105 WDLATGLLLRTLTGHTGAVRSVAFS---PDgkTLASGSADGTVRLWDLATGKLLRTL------TGHSGAVTSVAF----- 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370454560 310 gtTGDGKReiLVSISADGRISKWVIRKGldcydlmRLKRTtaasnkkggekekkdeaLISRQAPGMCFAFHPkDTNIYLA 389
Cdd:COG2319 171 --SPDGKL--LASGSDDGTVRLWDLATG-------KLLRT-----------------LTGHTGAVRSVAFSP-DGKLLAS 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370454560 390 GTEEGHIHKCSCSyNEQYLDTYRGHKGPVYKVTWNPfchD--VFLSCSADWGVIIWQQENVKPSLSFYPATSVVYDVAWS 467
Cdd:COG2319 222 GSADGTVRLWDLA-TGKLLRTLTGHSGSVRSVAFSP---DgrLLASGSADGTVRLWDLATGELLRTLTGHSGGVNSVAFS 297
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1370454560 468 PKSSYIFAAANENRVEIWDLhiSTLDPLIVNTANPGiKFTTILFAKQTDCLLVGDSDGQVSVYELRN 534
Cdd:COG2319 298 PDGKLLASGSDDGTVRLWDL--ATGKLLRTLTGHTG-AVRSVAFSPDGKTLASGSDDGTVRLWDLAT 361
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
199-487 |
8.68e-15 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 76.49 E-value: 8.68e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370454560 199 VSSLAWNktnPD--LLAVGYGhfgfkeqkRGLACCWSIKNPMWPERIYQSPYGVTAVDFSigaPN--LLAVGYHNGTIAI 274
Cdd:COG2319 165 VTSVAFS---PDgkLLASGSD--------DGTVRLWDLATGKLLRTLTGHTGAVRSVAFS---PDgkLLASGSADGTVRL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370454560 275 YNVRSNSNVPVLDSsespqkHLGPVWQLQWieqdrgtTGDGKReiLVSISADGRISKWVIRKGldcydlmRLKRTtaasn 354
Cdd:COG2319 231 WDLATGKLLRTLTG------HSGSVRSVAF-------SPDGRL--LASGSADGTVRLWDLATG-------ELLRT----- 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370454560 355 kkggekekkdeaLISRQAPGMCFAFHPkDTNIYLAGTEEGHIH-------KCscsyneqyLDTYRGHKGPVYKVTWNPFc 427
Cdd:COG2319 284 ------------LTGHSGGVNSVAFSP-DGKLLASGSDDGTVRlwdlatgKL--------LRTLTGHTGAVRSVAFSPD- 341
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370454560 428 HDVFLSCSADWGVIIWQQENVKPSLSFYPATSVVYDVAWSPKSSYIFAAANENRVEIWDL 487
Cdd:COG2319 342 GKTLASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSPDGRTLASGSADGTVRLWDL 401
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
204-486 |
1.04e-14 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 74.68 E-value: 1.04e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370454560 204 WNKTNPDLLAVGYGHFGFKE------QKRGLACC--------WSIKNPMWPERIYQSPYGVTAVDFSiGAPNLLAVGYHN 269
Cdd:cd00200 36 WDLETGELLRTLKGHTGPVRdvaasaDGTYLASGssdktirlWDLETGECVRTLTGHTSYVSSVAFS-PDGRILSSSSRD 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370454560 270 GTIAIYNVRSNSNVPVLDSsespqkHLGPVWQLQWIEQDRgttgdgkreILVSISADGRISKWVIRKGldcydlmRLKRT 349
Cdd:cd00200 115 KTIKVWDVETGKCLTTLRG------HTDWVNSVAFSPDGT---------FVASSSQDGTIKLWDLRTG-------KCVAT 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370454560 350 taasnkkggekekkdeaLISRQAPGMCFAFHPkDTNIYLAGTEEGHIhKCSCSYNEQYLDTYRGHKGPVYKVTWNPfCHD 429
Cdd:cd00200 173 -----------------LTGHTGEVNSVAFSP-DGEKLLSSSSDGTI-KLWDLSTGKCLGTLRGHENGVNSVAFSP-DGY 232
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1370454560 430 VFLSCSADWGVIIWQQENVKPSLSFYPATSVVYDVAWSPKSSYIFAAANENRVEIWD 486
Cdd:cd00200 233 LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
249-534 |
4.37e-14 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 74.18 E-value: 4.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370454560 249 GVTAVDFSigaPN--LLAVGYHNGTIAIYNVRSNSNVPVLDSsespqkHLGPVWQLQWieqdrgtTGDGKReiLVSISAD 326
Cdd:COG2319 164 AVTSVAFS---PDgkLLASGSDDGTVRLWDLATGKLLRTLTG------HTGAVRSVAF-------SPDGKL--LASGSAD 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370454560 327 GRISKWVIRKGldcydlmRLKRTtaasnkkggekekkdeaLISRQAPGMCFAFHPkDTNIYLAGTEEGHIHKCSCSyNEQ 406
Cdd:COG2319 226 GTVRLWDLATG-------KLLRT-----------------LTGHSGSVRSVAFSP-DGRLLASGSADGTVRLWDLA-TGE 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370454560 407 YLDTYRGHKGPVYKVTWNPfchD--VFLSCSADWGVIIWQQENVKPSLSFYPATSVVYDVAWSPKSSYIFAAANENRVEI 484
Cdd:COG2319 280 LLRTLTGHSGGVNSVAFSP---DgkLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRL 356
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1370454560 485 WDLHISTLDPLIVNTANPgikFTTILFAKQTDCLLVGDSDGQVSVYELRN 534
Cdd:COG2319 357 WDLATGELLRTLTGHTGA---VTSVAFSPDGRTLASGSADGTVRLWDLAT 403
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
249-531 |
2.25e-10 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 61.58 E-value: 2.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370454560 249 GVTAVDFSIGAPNLLAVGYhNGTIAIYNVRSNSNVPVLDSsespqkHLGPVWQLQWieqdrgttgDGKREILVSISADGR 328
Cdd:cd00200 53 PVRDVAASADGTYLASGSS-DKTIRLWDLETGECVRTLTG------HTSYVSSVAF---------SPDGRILSSSSRDKT 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370454560 329 ISKWVIRKGLDCYdlmrlkrttaasnkkggekekkdeALISRQAPGMCFAFHPkDTNIYLAGTEEGHIH-----KCSCSY 403
Cdd:cd00200 117 IKVWDVETGKCLT------------------------TLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKlwdlrTGKCVA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370454560 404 neqyldTYRGHKGPVYKVTWNPfchD--VFLSCSADWGVIIWQQENVKPSLSFYPATSVVYDVAWSPKSSYIFAAANENR 481
Cdd:cd00200 172 ------TLTGHTGEVNSVAFSP---DgeKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT 242
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1370454560 482 VEIWDLHISTLDPLIVNTANPgikFTTILFAKQTDCLLVGDSDGQVSVYE 531
Cdd:cd00200 243 IRVWDLRTGECVQTLSGHTNS---VTSLAWSPDGKRLASGSADGTIRIWD 289
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
295-544 |
5.27e-10 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 60.81 E-value: 5.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370454560 295 HLGPVWQLQWieqdrgttgDGKREILVSISADGRISKWvirkgldCYDLMRLKRTtaasnkkggekekkdeaLISRQAPG 374
Cdd:cd00200 8 HTGGVTCVAF---------SPDGKLLATGSGDGTIKVW-------DLETGELLRT-----------------LKGHTGPV 54
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370454560 375 MCFAFHPKDTNIYLAGTEeghiHKCSC--SYNEQYLDTYRGHKGPVYKVTWNPFCHdVFLSCSADWGVIIWQQENVKPSL 452
Cdd:cd00200 55 RDVAASADGTYLASGSSD----KTIRLwdLETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLT 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370454560 453 SFYPATSVVYDVAWSPKSSYIFAAANENRVEIWDLhistldplivNTANPGIKFT-------TILFAKQTDCLLVGDSDG 525
Cdd:cd00200 130 TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL----------RTGKCVATLTghtgevnSVAFSPDGEKLLSSSSDG 199
|
250
....*....|....*....
gi 1370454560 526 QVSVYELRnMPTVLETGRG 544
Cdd:cd00200 200 TIKLWDLS-TGKCLGTLRG 217
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
410-487 |
4.70e-09 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 57.73 E-value: 4.70e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1370454560 410 TYRGHKGPVYKVTWNPfCHDVFLSCSADWGVIIWQQENVKPSLSFYPATSVVYDVAWSPKSSYIFAAANENRVEIWDL 487
Cdd:cd00200 4 TLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
408-534 |
9.11e-06 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 47.98 E-value: 9.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370454560 408 LDTYRGHKGPVYKVTWNPfCHDVFLSCSADWGVIIWQQENVKPSLSFYPATSVVYDVAWSPKSSYIFAAANENRVEIWDL 487
Cdd:COG2319 71 LATLLGHTAAVLSVAFSP-DGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDL 149
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1370454560 488 H----ISTLDPlivntanPGIKFTTILFAKQTDCLLVGDSDGQVSVYELRN 534
Cdd:COG2319 150 AtgklLRTLTG-------HSGAVTSVAFSPDGKLLASGSDDGTVRLWDLAT 193
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
404-443 |
4.01e-04 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 38.06 E-value: 4.01e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1370454560 404 NEQYLDTYRGHKGPVYKVTWNPfCHDVFLSCSADWGVIIW 443
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLW 39
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
406-443 |
3.65e-03 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 35.40 E-value: 3.65e-03
10 20 30
....*....|....*....|....*....|....*...
gi 1370454560 406 QYLDTYRGHKGPVYKVTWNPfCHDVFLSCSADWGVIIW 443
Cdd:pfam00400 2 KLLKTLEGHTGSVTSLAFSP-DGKLLASGSDDGTVKVW 38
|
|
|