NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1370451612|ref|XP_024307172|]
View 

podoplanin isoform X1 [Homo sapiens]

Protein Classification

Podoplanin domain-containing protein( domain architecture ID 10530717)

Podoplanin domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Podoplanin pfam05808
Podoplanin; This family consists of several mammalian podoplanin like proteins which are ...
 1-119 1.13e-54

Podoplanin; This family consists of several mammalian podoplanin like proteins which are thought to control specifically the unique shape of podocytes.


:

Pssm-ID: 461746  Cd Length: 135  Bit Score: 166.91  E-value: 1.13e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451612   1 MPGAEDDVVTPGTSEDRYKS-GLTTLVATSVNSVTGIRIEDLPTSESTVHAQEQSPSATASNVATSHSTEKVDGDTQTTV 79
Cdd:pfam05808  16 TPGVEDNVVTTGASEEPYESsGLTTLVPTNTESVTDPHVEDLPTQESTVHAHEESQSTTTPNVATSHSREKVGEETQTTV 95

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1370451612  80 EKDGLSTVTLVGIIVGVLLAIGFIGAIIVVVMRKMSGRYS 119
Cdd:pfam05808  96 EKDGLATVTLVGIIVGVLLAIGFIGGIIIVVVRKMSGRYS 135
 
Name Accession Description Interval E-value
Podoplanin pfam05808
Podoplanin; This family consists of several mammalian podoplanin like proteins which are ...
 1-119 1.13e-54

Podoplanin; This family consists of several mammalian podoplanin like proteins which are thought to control specifically the unique shape of podocytes.


Pssm-ID: 461746  Cd Length: 135  Bit Score: 166.91  E-value: 1.13e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451612   1 MPGAEDDVVTPGTSEDRYKS-GLTTLVATSVNSVTGIRIEDLPTSESTVHAQEQSPSATASNVATSHSTEKVDGDTQTTV 79
Cdd:pfam05808  16 TPGVEDNVVTTGASEEPYESsGLTTLVPTNTESVTDPHVEDLPTQESTVHAHEESQSTTTPNVATSHSREKVGEETQTTV 95

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1370451612  80 EKDGLSTVTLVGIIVGVLLAIGFIGAIIVVVMRKMSGRYS 119
Cdd:pfam05808  96 EKDGLATVTLVGIIVGVLLAIGFIGGIIIVVVRKMSGRYS 135
 
Name Accession Description Interval E-value
Podoplanin pfam05808
Podoplanin; This family consists of several mammalian podoplanin like proteins which are ...
 1-119 1.13e-54

Podoplanin; This family consists of several mammalian podoplanin like proteins which are thought to control specifically the unique shape of podocytes.


Pssm-ID: 461746  Cd Length: 135  Bit Score: 166.91  E-value: 1.13e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451612   1 MPGAEDDVVTPGTSEDRYKS-GLTTLVATSVNSVTGIRIEDLPTSESTVHAQEQSPSATASNVATSHSTEKVDGDTQTTV 79
Cdd:pfam05808  16 TPGVEDNVVTTGASEEPYESsGLTTLVPTNTESVTDPHVEDLPTQESTVHAHEESQSTTTPNVATSHSREKVGEETQTTV 95

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1370451612  80 EKDGLSTVTLVGIIVGVLLAIGFIGAIIVVVMRKMSGRYS 119
Cdd:pfam05808  96 EKDGLATVTLVGIIVGVLLAIGFIGGIIIVVVRKMSGRYS 135
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH