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Conserved domains on  [gi|1443056877|ref|XP_025878506|]
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putative disease resistance protein RGA3 [Oryza sativa Japonica Group]

Protein Classification

NB-LRR family disease resistance protein( domain architecture ID 16059275)

NB-LRR family disease resistance protein guards the plant against pathogens via an indirect interaction with an avirulence protein contained in the plant, triggering a defense response that restricts the pathogen growth; similar to Oryza sativa Japonica Group disease resistance protein RGA4

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Rx_N pfam18052
Rx N-terminal domain; This entry represents the N-terminal domain found in many plant ...
 8-91 1.28e-09

Rx N-terminal domain; This entry represents the N-terminal domain found in many plant resistance proteins. This domain has been predicted to be a coiled-coil, however the structure shows that it adopts a four helical bundle fold.


:

Pssm-ID: 436239  Cd Length: 93  Bit Score: 54.97  E-value: 1.28e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443056877   8 VLADLLSRSISFVIDRYcQQQQGVEENLQQLQRMLLRIQTVDEEANGRRITNQAMLLQLKTMRNVMYRGYYFLDNFRYRI 87
Cdd:pfam18052   1 AVSSLLEKLGSLLAEEA-KLLKGVKDDLEKLKDELESIQAFLEDAERKQITDEQVKLWLKQLRDVAYDAEDVLDEFLYEA 79


                  ....
gi 1443056877  88 ALGH 91
Cdd:pfam18052  80 LRRK 83
NB-ARC super family cl26397
NB-ARC domain;
174-379 8.82e-06

NB-ARC domain;


The actual alignment was detected with superfamily member pfam00931:

Pssm-ID: 395745 [Multi-domain]  Cd Length: 245  Bit Score: 46.99  E-value: 8.82e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443056877 174 RQAEQERIISFLLEphragAEGVAVLPIIGPARVGKSTLVENVCHD--ERVRKYFSTI-VFYYTGSTEGAV--------- 241
Cdd:pfam00931   1 REDMVEKVIGKLSE-----KDEPGIVGIHGMGGVGKTTLAAQIFNDfdEVEGHFDSVAwVVVSKTFTISTLqqtilqnlg 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443056877 242 --------ADTGVIKH--QNPASTKQSLVVIelvDDM-DDETWRRILSSL-RGDNiaapVSKIIITSQSNKIATF--GTT 307
Cdd:pfam00931  76 lseddwdnKEEGELARkiRRALLTKRFLLVL---DDVwDEEDWDKIGIPLpDREN----GCRVLLTTRSEEVAGRvgGPS 148

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1443056877 308 ETLQLDMLPKEAFWYFLKTIAFGSTNpEEEPKLTSICMEIAAQANGAFLHANIIGGILRSNFSVQFWYKVLK 379
Cdd:pfam00931 149 DPHEVELLEPDEAWELFENKVFPKTL-GECELLEDVAKEIVEKCRGLPLALKVLGGLLSCKKTVEEWKHVYD 219
 
Name Accession Description Interval E-value
Rx_N pfam18052
Rx N-terminal domain; This entry represents the N-terminal domain found in many plant ...
 8-91 1.28e-09

Rx N-terminal domain; This entry represents the N-terminal domain found in many plant resistance proteins. This domain has been predicted to be a coiled-coil, however the structure shows that it adopts a four helical bundle fold.


Pssm-ID: 436239  Cd Length: 93  Bit Score: 54.97  E-value: 1.28e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443056877   8 VLADLLSRSISFVIDRYcQQQQGVEENLQQLQRMLLRIQTVDEEANGRRITNQAMLLQLKTMRNVMYRGYYFLDNFRYRI 87
Cdd:pfam18052   1 AVSSLLEKLGSLLAEEA-KLLKGVKDDLEKLKDELESIQAFLEDAERKQITDEQVKLWLKQLRDVAYDAEDVLDEFLYEA 79


                  ....
gi 1443056877  88 ALGH 91
Cdd:pfam18052  80 LRRK 83
NB-ARC pfam00931
NB-ARC domain;
174-379 8.82e-06

NB-ARC domain;


Pssm-ID: 395745 [Multi-domain]  Cd Length: 245  Bit Score: 46.99  E-value: 8.82e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443056877 174 RQAEQERIISFLLEphragAEGVAVLPIIGPARVGKSTLVENVCHD--ERVRKYFSTI-VFYYTGSTEGAV--------- 241
Cdd:pfam00931   1 REDMVEKVIGKLSE-----KDEPGIVGIHGMGGVGKTTLAAQIFNDfdEVEGHFDSVAwVVVSKTFTISTLqqtilqnlg 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443056877 242 --------ADTGVIKH--QNPASTKQSLVVIelvDDM-DDETWRRILSSL-RGDNiaapVSKIIITSQSNKIATF--GTT 307
Cdd:pfam00931  76 lseddwdnKEEGELARkiRRALLTKRFLLVL---DDVwDEEDWDKIGIPLpDREN----GCRVLLTTRSEEVAGRvgGPS 148

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1443056877 308 ETLQLDMLPKEAFWYFLKTIAFGSTNpEEEPKLTSICMEIAAQANGAFLHANIIGGILRSNFSVQFWYKVLK 379
Cdd:pfam00931 149 DPHEVELLEPDEAWELFENKVFPKTL-GECELLEDVAKEIVEKCRGLPLALKVLGGLLSCKKTVEEWKHVYD 219
 
Name Accession Description Interval E-value
Rx_N pfam18052
Rx N-terminal domain; This entry represents the N-terminal domain found in many plant ...
 8-91 1.28e-09

Rx N-terminal domain; This entry represents the N-terminal domain found in many plant resistance proteins. This domain has been predicted to be a coiled-coil, however the structure shows that it adopts a four helical bundle fold.


Pssm-ID: 436239  Cd Length: 93  Bit Score: 54.97  E-value: 1.28e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443056877   8 VLADLLSRSISFVIDRYcQQQQGVEENLQQLQRMLLRIQTVDEEANGRRITNQAMLLQLKTMRNVMYRGYYFLDNFRYRI 87
Cdd:pfam18052   1 AVSSLLEKLGSLLAEEA-KLLKGVKDDLEKLKDELESIQAFLEDAERKQITDEQVKLWLKQLRDVAYDAEDVLDEFLYEA 79


                  ....
gi 1443056877  88 ALGH 91
Cdd:pfam18052  80 LRRK 83
NB-ARC pfam00931
NB-ARC domain;
174-379 8.82e-06

NB-ARC domain;


Pssm-ID: 395745 [Multi-domain]  Cd Length: 245  Bit Score: 46.99  E-value: 8.82e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443056877 174 RQAEQERIISFLLEphragAEGVAVLPIIGPARVGKSTLVENVCHD--ERVRKYFSTI-VFYYTGSTEGAV--------- 241
Cdd:pfam00931   1 REDMVEKVIGKLSE-----KDEPGIVGIHGMGGVGKTTLAAQIFNDfdEVEGHFDSVAwVVVSKTFTISTLqqtilqnlg 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443056877 242 --------ADTGVIKH--QNPASTKQSLVVIelvDDM-DDETWRRILSSL-RGDNiaapVSKIIITSQSNKIATF--GTT 307
Cdd:pfam00931  76 lseddwdnKEEGELARkiRRALLTKRFLLVL---DDVwDEEDWDKIGIPLpDREN----GCRVLLTTRSEEVAGRvgGPS 148

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1443056877 308 ETLQLDMLPKEAFWYFLKTIAFGSTNpEEEPKLTSICMEIAAQANGAFLHANIIGGILRSNFSVQFWYKVLK 379
Cdd:pfam00931 149 DPHEVELLEPDEAWELFENKVFPKTL-GECELLEDVAKEIVEKCRGLPLALKVLGGLLSCKKTVEEWKHVYD 219
AAA_16 pfam13191
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ...
 172-218 2.34e-03

AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.


Pssm-ID: 433025 [Multi-domain]  Cd Length: 167  Bit Score: 39.02  E-value: 2.34e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1443056877 172 FGRQAEQERIISfLLEPHRAGAEGVAVLpiIGPARVGKSTLVENVCH 218
Cdd:pfam13191   3 VGREEELEQLLD-ALDRVRSGRPPSVLL--TGEAGTGKTTLLRELLR 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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