NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1443061101|ref|XP_025879125|]
View 

actin-related protein 2/3 complex subunit 3 isoform X2 [Oryza sativa Japonica Group]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
P21-Arc super family cl04383
ARP2/3 complex ARPC3 (21 kDa) subunit; The seven component ARP2/3 actin-organizing complex is ...
 2-127 2.78e-66

ARP2/3 complex ARPC3 (21 kDa) subunit; The seven component ARP2/3 actin-organizing complex is involved in actin assembly and function.


The actual alignment was detected with superfamily member pfam04062:

Pssm-ID: 461152  Cd Length: 174  Bit Score: 198.11  E-value: 2.78e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443061101   2 VYHSSFVDDTGITKACGCPLLPLKTHIRGPAPAFDQDKADIVDEAITFFRANVFFKNFNVKSPADKLLIYLTFYINIALK 81
Cdd:pfam04062   3 AYHSSFNDDTNVRLVGNMALLPLKTKFRGPAPPLDNEDYDIIDEALDLFRANVFFRNFEIKGPADRVLIYLTLFISECLK 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1443061101  82 RLEGCRTLAVGTKAIINLGLEKVPVPGEPGFPFPGLFTLPQSQEEA 127
Cdd:pfam04062  83 KLQKCTSKNEAQKELYTLALDNFAIPGDAGFPLNSLYAKPASRAEA 128
 
Name Accession Description Interval E-value
P21-Arc pfam04062
ARP2/3 complex ARPC3 (21 kDa) subunit; The seven component ARP2/3 actin-organizing complex is ...
 2-127 2.78e-66

ARP2/3 complex ARPC3 (21 kDa) subunit; The seven component ARP2/3 actin-organizing complex is involved in actin assembly and function.


Pssm-ID: 461152  Cd Length: 174  Bit Score: 198.11  E-value: 2.78e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443061101   2 VYHSSFVDDTGITKACGCPLLPLKTHIRGPAPAFDQDKADIVDEAITFFRANVFFKNFNVKSPADKLLIYLTFYINIALK 81
Cdd:pfam04062   3 AYHSSFNDDTNVRLVGNMALLPLKTKFRGPAPPLDNEDYDIIDEALDLFRANVFFRNFEIKGPADRVLIYLTLFISECLK 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1443061101  82 RLEGCRTLAVGTKAIINLGLEKVPVPGEPGFPFPGLFTLPQSQEEA 127
Cdd:pfam04062  83 KLQKCTSKNEAQKELYTLALDNFAIPGDAGFPLNSLYAKPASRAEA 128
 
Name Accession Description Interval E-value
P21-Arc pfam04062
ARP2/3 complex ARPC3 (21 kDa) subunit; The seven component ARP2/3 actin-organizing complex is ...
 2-127 2.78e-66

ARP2/3 complex ARPC3 (21 kDa) subunit; The seven component ARP2/3 actin-organizing complex is involved in actin assembly and function.


Pssm-ID: 461152  Cd Length: 174  Bit Score: 198.11  E-value: 2.78e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443061101   2 VYHSSFVDDTGITKACGCPLLPLKTHIRGPAPAFDQDKADIVDEAITFFRANVFFKNFNVKSPADKLLIYLTFYINIALK 81
Cdd:pfam04062   3 AYHSSFNDDTNVRLVGNMALLPLKTKFRGPAPPLDNEDYDIIDEALDLFRANVFFRNFEIKGPADRVLIYLTLFISECLK 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1443061101  82 RLEGCRTLAVGTKAIINLGLEKVPVPGEPGFPFPGLFTLPQSQEEA 127
Cdd:pfam04062  83 KLQKCTSKNEAQKELYTLALDNFAIPGDAGFPLNSLYAKPASRAEA 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH