NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1443070632|ref|XP_025880145|]
View 

probable glutamyl endopeptidase, chloroplastic isoform X1 [Oryza sativa Japonica Group]

Protein Classification

alpha/beta hydrolase family protein( domain architecture ID 11445445)

alpha/beta hydrolase family protein catalyzes the hydrolysis of substrates with different chemical composition or physicochemical properties using a nucleophile-His-acid catalytic triad

CATH:  3.40.50.1820
EC:  3.-.-.-
Gene Ontology:  GO:0016787
PubMed:  12369917

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DAP2 COG1506
Dipeptidyl aminopeptidase/acylaminoacyl peptidase [Amino acid transport and metabolism];
638-892 2.52e-41

Dipeptidyl aminopeptidase/acylaminoacyl peptidase [Amino acid transport and metabolism];


:

Pssm-ID: 441115 [Multi-domain]  Cd Length: 234  Bit Score: 151.71  E-value: 2.52e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 638 RYQRKDGVQLTATLYLPPGydpsqDGPLPCLVWSYPGEfkskdaAGQVRGSPNEFPgigatsplLWLARGFAILsgpTIP 717
Cdd:COG1506     1 TFKSADGTTLPGWLYLPAD-----GKKYPVVVYVHGGP------GSRDDSFLPLAQ--------ALASRGYAVL---APD 58

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 718 IIGEGDEEANDRYVEqlVTSAEAAAEEVVRRGVAHPDKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-RTLTPF 796
Cdd:COG1506    59 YRGYGESAGDWGGDE--VDDVLAAIDYLAARPYVDPDRIGIYGHSYGGYMALLAAARHPDRFKAAVALAGVSDlRSYYGT 136

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 797 GF---QNEDRTLWEATNTYVEMSPFMSANKIKKPILLIHGEQDNNsgTLTMQSDRFFNALKGHGALSRLVILPFESHGYS 873
Cdd:COG1506   137 TReytERLMGGPWEDPEAYAARSPLAYADKLKTPLLLIHGEADDR--VPPEQAERLYEALKKAGKPVELLVYPGEGHGFS 214

                         250
                  ....*....|....*....
gi 1443070632 874 aRESIMHVLWETDRWLQKY 892
Cdd:COG1506   215 -GAGAPDYLERILDFLDRH 232
COG4946 super family cl27624
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ...
 169-247 3.81e-04

Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];


The actual alignment was detected with superfamily member COG4946:

Pssm-ID: 443973 [Multi-domain]  Cd Length: 1072  Bit Score: 44.26  E-value: 3.81e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1443070632  169 DGTLGPEKVVHGypEGARINFVTWSQDGRHLSFsvrvdeednTSGKLRLWIADVESGEARPLFKSPeiYLNAIFDsFVW 247
Cdd:COG4946    375 DGSGEPKQLTLG--DLGRVFNPVWSPDGKKIAF---------TDNRGRLWVVDLASGKVRKVDTDG--YGDGISD-LAW 439
 
Name Accession Description Interval E-value
DAP2 COG1506
Dipeptidyl aminopeptidase/acylaminoacyl peptidase [Amino acid transport and metabolism];
638-892 2.52e-41

Dipeptidyl aminopeptidase/acylaminoacyl peptidase [Amino acid transport and metabolism];


Pssm-ID: 441115 [Multi-domain]  Cd Length: 234  Bit Score: 151.71  E-value: 2.52e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 638 RYQRKDGVQLTATLYLPPGydpsqDGPLPCLVWSYPGEfkskdaAGQVRGSPNEFPgigatsplLWLARGFAILsgpTIP 717
Cdd:COG1506     1 TFKSADGTTLPGWLYLPAD-----GKKYPVVVYVHGGP------GSRDDSFLPLAQ--------ALASRGYAVL---APD 58

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 718 IIGEGDEEANDRYVEqlVTSAEAAAEEVVRRGVAHPDKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-RTLTPF 796
Cdd:COG1506    59 YRGYGESAGDWGGDE--VDDVLAAIDYLAARPYVDPDRIGIYGHSYGGYMALLAAARHPDRFKAAVALAGVSDlRSYYGT 136

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 797 GF---QNEDRTLWEATNTYVEMSPFMSANKIKKPILLIHGEQDNNsgTLTMQSDRFFNALKGHGALSRLVILPFESHGYS 873
Cdd:COG1506   137 TReytERLMGGPWEDPEAYAARSPLAYADKLKTPLLLIHGEADDR--VPPEQAERLYEALKKAGKPVELLVYPGEGHGFS 214

                         250
                  ....*....|....*....
gi 1443070632 874 aRESIMHVLWETDRWLQKY 892
Cdd:COG1506   215 -GAGAPDYLERILDFLDRH 232
Peptidase_S9 pfam00326
Prolyl oligopeptidase family;
740-892 4.37e-21

Prolyl oligopeptidase family;


Pssm-ID: 459761 [Multi-domain]  Cd Length: 213  Bit Score: 92.68  E-value: 4.37e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 740 AAAEEVVRRGVAHPDKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN------RTLTPFGFQNEDR-TLWEATNTY 812
Cdd:pfam00326  50 AAAEYLIEQGYTDPDRLAIWGGSYGGYLTGAALNQRPDLFKAAVAHVPVVDwlaymsDTSLPFTERYMEWgNPWDNEEGY 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 813 VEMSP--FMSANKIKKPILLIHGEQDNNsgTLTMQSDRFFNALKGHGALSRLVILPFESHGYSARESIMHVLWETDRWLQ 890
Cdd:pfam00326 130 DYLSPysPADNVKVYPPLLLIHGLLDDR--VPPWQSLKLVAALQRKGVPFLLLIFPDEGHGIGKPRNKVEEYARELAFLL 207


                  ..
gi 1443070632 891 KY 892
Cdd:pfam00326 208 EY 209
COG4946 COG4946
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ...
 169-247 3.81e-04

Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];


Pssm-ID: 443973 [Multi-domain]  Cd Length: 1072  Bit Score: 44.26  E-value: 3.81e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1443070632  169 DGTLGPEKVVHGypEGARINFVTWSQDGRHLSFsvrvdeednTSGKLRLWIADVESGEARPLFKSPeiYLNAIFDsFVW 247
Cdd:COG4946    375 DGSGEPKQLTLG--DLGRVFNPVWSPDGKKIAF---------TDNRGRLWVVDLASGKVRKVDTDG--YGDGISD-LAW 439
 
Name Accession Description Interval E-value
DAP2 COG1506
Dipeptidyl aminopeptidase/acylaminoacyl peptidase [Amino acid transport and metabolism];
638-892 2.52e-41

Dipeptidyl aminopeptidase/acylaminoacyl peptidase [Amino acid transport and metabolism];


Pssm-ID: 441115 [Multi-domain]  Cd Length: 234  Bit Score: 151.71  E-value: 2.52e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 638 RYQRKDGVQLTATLYLPPGydpsqDGPLPCLVWSYPGEfkskdaAGQVRGSPNEFPgigatsplLWLARGFAILsgpTIP 717
Cdd:COG1506     1 TFKSADGTTLPGWLYLPAD-----GKKYPVVVYVHGGP------GSRDDSFLPLAQ--------ALASRGYAVL---APD 58

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 718 IIGEGDEEANDRYVEqlVTSAEAAAEEVVRRGVAHPDKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-RTLTPF 796
Cdd:COG1506    59 YRGYGESAGDWGGDE--VDDVLAAIDYLAARPYVDPDRIGIYGHSYGGYMALLAAARHPDRFKAAVALAGVSDlRSYYGT 136

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 797 GF---QNEDRTLWEATNTYVEMSPFMSANKIKKPILLIHGEQDNNsgTLTMQSDRFFNALKGHGALSRLVILPFESHGYS 873
Cdd:COG1506   137 TReytERLMGGPWEDPEAYAARSPLAYADKLKTPLLLIHGEADDR--VPPEQAERLYEALKKAGKPVELLVYPGEGHGFS 214

                         250
                  ....*....|....*....
gi 1443070632 874 aRESIMHVLWETDRWLQKY 892
Cdd:COG1506   215 -GAGAPDYLERILDFLDRH 232
Peptidase_S9 pfam00326
Prolyl oligopeptidase family;
740-892 4.37e-21

Prolyl oligopeptidase family;


Pssm-ID: 459761 [Multi-domain]  Cd Length: 213  Bit Score: 92.68  E-value: 4.37e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 740 AAAEEVVRRGVAHPDKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN------RTLTPFGFQNEDR-TLWEATNTY 812
Cdd:pfam00326  50 AAAEYLIEQGYTDPDRLAIWGGSYGGYLTGAALNQRPDLFKAAVAHVPVVDwlaymsDTSLPFTERYMEWgNPWDNEEGY 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 813 VEMSP--FMSANKIKKPILLIHGEQDNNsgTLTMQSDRFFNALKGHGALSRLVILPFESHGYSARESIMHVLWETDRWLQ 890
Cdd:pfam00326 130 DYLSPysPADNVKVYPPLLLIHGLLDDR--VPPWQSLKLVAALQRKGVPFLLLIFPDEGHGIGKPRNKVEEYARELAFLL 207


                  ..
gi 1443070632 891 KY 892
Cdd:pfam00326 208 EY 209
DLH COG0412
Dienelactone hydrolase [Secondary metabolites biosynthesis, transport and catabolism];
635-877 1.51e-12

Dienelactone hydrolase [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440181 [Multi-domain]  Cd Length: 226  Bit Score: 68.07  E-value: 1.51e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 635 EMIRYQRKDGVQLTATLYLPPGydpsqDGPLPCLVwsypgefkskdaagqVrgspneFPGIGATSPLL-----WLA-RGF 708
Cdd:COG0412     4 ETVTIPTPDGVTLPGYLARPAG-----GGPRPGVV---------------V------LHEIFGLNPHIrdvarRLAaAGY 57

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 709 AIL------SGPTIPIIGEGDEEANDRYVEQLVTSAEAAAEEVVRRGVAHPDKIAVGGHSYGAFMTANLLAHAPHLfCCG 782
Cdd:COG0412    58 VVLapdlygRGGPGDDPDEARALMGALDPELLAADLRAALDWLKAQPEVDAGRVGVVGFCFGGGLALLAAARGPDL-AAA 136

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 783 IARSGaynRTLTPFGFQnedrtlweatntyvemspfmSANKIKKPILLIHGEQDnnSGTLTMQSDRFFNALKGHGALSRL 862
Cdd:COG0412   137 VSFYG---GLPADDLLD--------------------LAARIKAPVLLLYGEKD--PLVPPEQVAALEAALAAAGVDVEL 191

                         250
                  ....*....|....*
gi 1443070632 863 VILPFESHGYSARES 877
Cdd:COG0412   192 HVYPGAGHGFTNPGR 206
COG4099 COG4099
Predicted peptidase [General function prediction only];
642-871 2.95e-10

Predicted peptidase [General function prediction only];


Pssm-ID: 443275 [Multi-domain]  Cd Length: 235  Bit Score: 61.52  E-value: 2.95e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 642 KDGVQLTATLYLPPGYDPSQdgPLPCLVWsYPGefkskdaAGQvRGSPNEFP----GIGATSPLLWLARGFAILSgPTIP 717
Cdd:COG4099    28 SDGDTLPYRLYLPKGYDPGK--KYPLVLF-LHG-------AGE-RGTDNEKQlthgAPKFINPENQAKFPAIVLA-PQCP 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 718 iigegdeeANDRYVEqlvTSAEAAAEEVVRRGVAH----PDKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTl 793
Cdd:COG4099    96 --------EDDYWSD---TKALDAVLALLDDLIAEyridPDRIYLTGLSMGGYGTWDLAARYPDLFAAAVPICGGGDPA- 163

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1443070632 794 tpfgfqnedrtlweatntyvemspfmSANKIKK-PILLIHGEQDNNSgtLTMQSDRFFNALKGHGALSRLVILPFESHG 871
Cdd:COG4099   164 --------------------------NAANLKKvPVWIFHGAKDDVV--PVEESRAMVEALKAAGADVKYTEYPGVGHN 214
FrsA COG1073
Fermentation-respiration switch esterase FrsA, DUF1100 family [Signal transduction mechanisms]; ...
 626-870 5.40e-10

Fermentation-respiration switch esterase FrsA, DUF1100 family [Signal transduction mechanisms];


Pssm-ID: 440691 [Multi-domain]  Cd Length: 253  Bit Score: 61.08  E-value: 5.40e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 626 YPQLASLYKEMIRYQRKDGVQLTATLYLPPGydpsQDGPLPCLVWSYP-GEFKSkDAAGQVRgspnefpgigatsplLWL 704
Cdd:COG1073     2 FPPSDKVNKEDVTFKSRDGIKLAGDLYLPAG----ASKKYPAVVVAHGnGGVKE-QRALYAQ---------------RLA 61

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 705 ARGFAIL---------SGPTIpiIGEGDEEANDryveqlvtsAEAAAEEVVRRGVAHPDKIAVGGHSYGAFMTANLLAHA 775
Cdd:COG1073    62 ELGFNVLafdyrgygeSEGEP--REEGSPERRD---------ARAAVDYLRTLPGVDPERIGLLGISLGGGYALNAAATD 130

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 776 PHlFCCGIARSG--------------AYNRTLTPFGFQNEDRTLWEATNtyvEMSPFMSANKIKKPILLIHGEQDnNSGT 841
Cdd:COG1073   131 PR-VKAVILDSPftsledlaaqrakeARGAYLPGVPYLPNVRLASLLND---EFDPLAKIEKISRPLLFIHGEKD-EAVP 205

                         250       260
                  ....*....|....*....|....*....
gi 1443070632 842 LTMqSDRFFNALKGHgalSRLVILPFESH 870
Cdd:COG1073   206 FYM-SEDLYEAAAEP---KELLIVPGAGH 230
YpfH COG0400
Predicted esterase [General function prediction only];
694-891 6.12e-09

Predicted esterase [General function prediction only];


Pssm-ID: 440169 [Multi-domain]  Cd Length: 200  Bit Score: 56.84  E-value: 6.12e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 694 GIGATSP-LLWLAR-----GFAILS--GPTIP------------IIGEGDEEANDRYVEQLvtsAEAAAEEVVRRGVAhP 753
Cdd:COG0400    13 GYGGDEEdLLPLAPelalpGAAVLAprAPVPEgpggrawfdlsfLEGREDEEGLAAAAEAL---AAFIDELEARYGID-P 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 754 DKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRtlweatntyvemspfmsankiKKPILLIHG 833
Cdd:COG0400    89 ERIVLAGFSQGAAMALSLALRRPELLAGVVALSGYLPGEEALPAPEAALA---------------------GTPVFLAHG 147

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1443070632 834 EQDNnsgTLTMQ-SDRFFNALKGHGALSRLVILPFEsHGYSAREsIMHVLwetdRWLQK 891
Cdd:COG0400   148 TQDP---VIPVErAREAAEALEAAGADVTYREYPGG-HEISPEE-LADAR----AWLAE 197
PldB COG2267
Lysophospholipase, alpha-beta hydrolase superfamily [Lipid transport and metabolism];
703-891 8.13e-09

Lysophospholipase, alpha-beta hydrolase superfamily [Lipid transport and metabolism];


Pssm-ID: 441868 [Multi-domain]  Cd Length: 221  Bit Score: 56.93  E-value: 8.13e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 703 WLARGFAILsgpTIPIIGEGDEEANDRYV---EQLVTSAEAAAEEVVRRGvahPDKIAVGGHSYGAFMTANLLAHAPHLF 779
Cdd:COG2267    51 LAAAGYAVL---AFDLRGHGRSDGPRGHVdsfDDYVDDLRAALDALRARP---GLPVVLLGHSMGGLIALLYAARYPDRV 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 780 CCGIARSGAYNrtltpfgfqnEDRTLWEATNTYVEMSPFMSANKIKKPILLIHGEQD---NNSGtltmqSDRFFNALKGH 856
Cdd:COG2267   125 AGLVLLAPAYR----------ADPLLGPSARWLRALRLAEALARIDVPVLVLHGGADrvvPPEA-----ARRLAARLSPD 189

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1443070632 857 GalsRLVILPfeshgySARESIMH------VLWETDRWLQK 891
Cdd:COG2267   190 V---ELVLLP------GARHELLNepareeVLAAILAWLER 221
COG4188 COG4188
Predicted dienelactone hydrolase [General function prediction only];
657-866 1.38e-05

Predicted dienelactone hydrolase [General function prediction only];


Pssm-ID: 443342 [Multi-domain]  Cd Length: 326  Bit Score: 48.18  E-value: 1.38e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 657 YDPSQDGPLPCLVWsYPGEfKSKDAAGQVRgspneFP------GIGAtSP--LLWLAR-----GFAILSgPTIPiigeGD 723
Cdd:COG4188    34 RDPSRDRPLPVDVW-YPAT-APADAPAGGP-----FPlvvlshGLGG-SRegYAYLAEhlashGYVVAA-PDHP----GS 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 724 EEANDRYVEQLVTSAEAAAEEVVR---------------------RGVAHPDKIAVGGHSYGAfMTANLLAHAphlfccG 782
Cdd:COG4188   101 NAADLSAALDGLADALDPEELWERpldlsfvldqllalnksdpplAGRLDLDRIGVIGHSLGG-YTALALAGA------R 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 783 IARSGAYNRTLTPFGFQNEDRTLWEATNTY--------VEMSPFMSA-------NKIKKPILLIHGEQDNNSGTLTmQSD 847
Cdd:COG4188   174 LDFAALRQYCGKNPDLQCRALDLPRLAYDLrdprikavVALAPGGSGlfgeeglAAITIPVLLVAGSADDVTPAPD-EQI 252

                         250
                  ....*....|....*....
gi 1443070632 848 RFFNALKghGALSRLVILP 866
Cdd:COG4188   253 RPFDLLP--GADKYLLTLE 269
LpqC COG3509
Acetyl xylan esterase AxeA and related esterases, LpqC family [Carbohydrate transport and ...
 643-837 1.84e-05

Acetyl xylan esterase AxeA and related esterases, LpqC family [Carbohydrate transport and metabolism];


Pssm-ID: 442732 [Multi-domain]  Cd Length: 284  Bit Score: 47.69  E-value: 1.84e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 643 DGVQLTATLYLPPGYDPSQdgPLPCLV---WSypgefkSKDAAGQVRGSpnefpGIGAtsplLWLARGFAIL-------- 711
Cdd:COG3509    33 GGGTRTYRLYVPAGYDGGA--PLPLVValhGC------GGSAADFAAGT-----GLNA----LADREGFIVVypegtgra 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 712 -------SGPTIPIIGEGDeeandryveqlVTSAEAAAEEVVRRGVAHPDKIAVGGHSYGAFMTANLLAHAPHLFcCGIA 784
Cdd:COG3509    96 pgrcwnwFDGRDQRRGRDD-----------VAFIAALVDDLAARYGIDPKRVYVTGLSAGGAMAYRLACEYPDVF-AAVA 163

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1443070632 785 -RSGAYNRTLTPFGFQNEDRTlweatntyvemspfmsankikkPILLIHGEQDN 837
Cdd:COG3509   164 pVAGLPYGAASDAACAPGRPV----------------------PVLVIHGTADP 195
MenH COG0596
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, ...
 693-870 2.41e-04

2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold [Coenzyme transport and metabolism, General function prediction only]; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold is part of the Pathway/BioSystem: Menaquinone biosynthesis


Pssm-ID: 440361 [Multi-domain]  Cd Length: 221  Bit Score: 43.45  E-value: 2.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 693 PGIGATS----PLL-WLARGFAILSgPTIPIIGEGDEEANDRYVEQLVTSAEAAAEEVvrrgvaHPDKIAVGGHSYGAFM 767
Cdd:COG0596    30 HGLPGSSyewrPLIpALAAGYRVIA-PDLRGHGRSDKPAGGYTLDDLADDLAALLDAL------GLERVVLVGHSMGGMV 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 768 TANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNED-RTLWEATNTYVEMSPFMSANKIKKPILLIHGEQDNNSGTLTMQs 846
Cdd:COG0596   103 ALELAARHPERVAGLVLVDEVLAALAEPLRRPGLApEALAALLRALARTDLRERLARITVPTLVIWGEKDPIVPPALAR- 181

                         170       180
                  ....*....|....*....|....
gi 1443070632 847 dRFFNALKGhgalSRLVILPFESH 870
Cdd:COG0596   182 -RLAELLPN----AELVVLPGAGH 200
COG4946 COG4946
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ...
 169-247 3.81e-04

Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];


Pssm-ID: 443973 [Multi-domain]  Cd Length: 1072  Bit Score: 44.26  E-value: 3.81e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1443070632  169 DGTLGPEKVVHGypEGARINFVTWSQDGRHLSFsvrvdeednTSGKLRLWIADVESGEARPLFKSPeiYLNAIFDsFVW 247
Cdd:COG4946    375 DGSGEPKQLTLG--DLGRVFNPVWSPDGKKIAF---------TDNRGRLWVVDLASGKVRKVDTDG--YGDGISD-LAW 439
Peptidase_S15 pfam02129
X-Pro dipeptidyl-peptidase (S15 family);
643-872 4.61e-04

X-Pro dipeptidyl-peptidase (S15 family);


Pssm-ID: 396621 [Multi-domain]  Cd Length: 264  Bit Score: 43.10  E-value: 4.61e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 643 DGVQLTATLYLPPgydpSQDGPLPCLV----WSYPGEFKSKDAAGQVRGSpnefpgigatspllWLARGFAILSGPTIpi 718
Cdd:pfam02129   1 DGVRLAADIYRPT----KTGGPVPALLtrspYGARRDGASDLALAHPEWE--------------FAARGYAVVYQDVR-- 60

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 719 iGEGDEEAndryVEQLVTSAEAA-AEEVVRRGVAHP---DKIAVGGHSYGAFmTANLLA--HAPHLFC----CGIARSGA 788
Cdd:pfam02129  61 -GTGGSEG----VFTVGGPQEAAdGKDVIDWLAGQPwcnGKVGMTGISYLGT-TQLAAAatGPPGLKAiapeSGISDLYD 134

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443070632 789 YNRT----LTPFGFQNEDRTL---------------WEATNTYVEMSPFMSA---------------------------- 821
Cdd:pfam02129 135 YYREggavRAPGGLGWEDLDLlaealtsrraddgdaYRAAARYEAAGDELLAeldrqlfllewllqtgdydafwqdrnyl 214

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1443070632 822 ---NKIKKPILLIHGEQDNNSgtlTMQSDRFFNALKGHGALSRLVILPFeSHGY 872
Cdd:pfam02129 215 edaDKVKAPVLLVGGWQDWNV---KNGAIKLYEALRAPGVKKKLILGPW-THVY 264
TolB COG0823
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ...
 166-234 5.94e-03

Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440585 [Multi-domain]  Cd Length: 158  Bit Score: 38.50  E-value: 5.94e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1443070632 166 LMDDGTLGPEKVVHGypeGARINFVTWSQDGRHLSFSVRVDeedntsGKLRLWIADVESGEARPLFKSP 234
Cdd:COG0823    59 VVDADGGEPRRLTFG---GGYNASPSWSPDGKRLAFVSRSD------GRFDIYVLDLDGGAPRRLTDGP 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH