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Conserved domains on  [gi|1907138889|ref|XP_030106382|]
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protein sel-1 homolog 2 isoform X2 [Mus musculus]

Protein Classification

SEL1-like repeat protein( domain architecture ID 11434924)

SEL1-like repeat family protein may function as an adaptor protein for the assembly of macromolecular complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  16870393
SCOP:  3001345

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
282-476 5.77e-46

TPR repeat [General function prediction only];


:

Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 163.18  E-value: 5.77e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138889 282 WDIYQYYKFLAERGDVQIQVSLGQLHLIGRkGLDQDYSKALYYFLKAAKAGSANAMAFIGKMYFEGNAAaPQNNATAFKY 361
Cdd:COG0790    48 AAAAAAAAAAAAAGGAEAQYNLGLMYAEGR-GVPKDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGV-PQDYAKALEW 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138889 362 FSMAASKGNAIGLHGLGLLYFHGKGVPVNYGEALKYFQKAAEKGWPNAQFQLGFMYYSGSGVWKDYKLAFKYFYLASQSG 441
Cdd:COG0790   126 YEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQG 205

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1907138889 442 QPLAIYYLAEMYATGTGVLRSCRTAVELYKGVCEL 476
Cdd:COG0790   206 DADAQYNLGRLYLNGEGVEKDLEKALRWLRKAAEQ 240
TPR COG0790
TPR repeat [General function prediction only];
124-331 1.09e-17

TPR repeat [General function prediction only];


:

Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 83.05  E-value: 1.09e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138889 124 QKQKTEAYTLFTRAANMGNLKAMEKMADAWLFGSFGMQNITAAIQLYESLAKEGSYKAQNALGFLSSYGIGMEYDQAKAL 203
Cdd:COG0790    80 PKDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAA 159

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138889 204 IYYTFGSAGGSMMSQMILGYRYLSGINVLQNCEVAlnhykkvadyiadkleksegipvekvrlterpenlssnseildwd 283
Cdd:COG0790   160 EWYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKA--------------------------------------------- 194

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1907138889 284 iYQYYKFLAERGDVQIQVSLGQLHLIGRkGLDQDYSKALYYFLKAAKA 331
Cdd:COG0790   195 -LEWYRKAAEQGDADAQYNLGRLYLNGE-GVEKDLEKALRWLRKAAEQ 240
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 588-620 3.29e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


:

Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 44.09  E-value: 3.29e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1907138889  588 AQAMFNLAYMYEHGLGIAKDIHLARRLYDMAAQ 620
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAE 33
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 551-586 2.05e-03

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


:

Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 36.00  E-value: 2.05e-03
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1907138889  551 AFARVKIGDYHYYGYGTKKDYETAATHYSIAADKHH 586
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
 
Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
282-476 5.77e-46

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 163.18  E-value: 5.77e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138889 282 WDIYQYYKFLAERGDVQIQVSLGQLHLIGRkGLDQDYSKALYYFLKAAKAGSANAMAFIGKMYFEGNAAaPQNNATAFKY 361
Cdd:COG0790    48 AAAAAAAAAAAAAGGAEAQYNLGLMYAEGR-GVPKDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGV-PQDYAKALEW 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138889 362 FSMAASKGNAIGLHGLGLLYFHGKGVPVNYGEALKYFQKAAEKGWPNAQFQLGFMYYSGSGVWKDYKLAFKYFYLASQSG 441
Cdd:COG0790   126 YEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQG 205

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1907138889 442 QPLAIYYLAEMYATGTGVLRSCRTAVELYKGVCEL 476
Cdd:COG0790   206 DADAQYNLGRLYLNGEGVEKDLEKALRWLRKAAEQ 240
TPR COG0790
TPR repeat [General function prediction only];
124-331 1.09e-17

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 83.05  E-value: 1.09e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138889 124 QKQKTEAYTLFTRAANMGNLKAMEKMADAWLFGSFGMQNITAAIQLYESLAKEGSYKAQNALGFLSSYGIGMEYDQAKAL 203
Cdd:COG0790    80 PKDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAA 159

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138889 204 IYYTFGSAGGSMMSQMILGYRYLSGINVLQNCEVAlnhykkvadyiadkleksegipvekvrlterpenlssnseildwd 283
Cdd:COG0790   160 EWYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKA--------------------------------------------- 194

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1907138889 284 iYQYYKFLAERGDVQIQVSLGQLHLIGRkGLDQDYSKALYYFLKAAKA 331
Cdd:COG0790   195 -LEWYRKAAEQGDADAQYNLGRLYLNGE-GVEKDLEKALRWLRKAAEQ 240
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 407-441 2.01e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 44.47  E-value: 2.01e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1907138889  407 PNAQFQLGFMYYSGSGVWKDYKLAFKYFYLASQSG 441
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 588-620 3.29e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 44.09  E-value: 3.29e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1907138889  588 AQAMFNLAYMYEHGLGIAKDIHLARRLYDMAAQ 620
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAE 33
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 371-405 5.35e-06

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 43.28  E-value: 5.35e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1907138889 371 AIGLHGLGLLYFHGKGVPVNYGEALKYFQKAAEKG 405
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 588-620 5.73e-06

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 43.28  E-value: 5.73e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1907138889 588 AQAMFNLAYMYEHGLGIAKDIHLARRLYDMAAQ 620
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAE 33
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 551-586 2.05e-03

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 36.00  E-value: 2.05e-03
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1907138889  551 AFARVKIGDYHYYGYGTKKDYETAATHYSIAADKHH 586
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
 
Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
282-476 5.77e-46

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 163.18  E-value: 5.77e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138889 282 WDIYQYYKFLAERGDVQIQVSLGQLHLIGRkGLDQDYSKALYYFLKAAKAGSANAMAFIGKMYFEGNAAaPQNNATAFKY 361
Cdd:COG0790    48 AAAAAAAAAAAAAGGAEAQYNLGLMYAEGR-GVPKDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGV-PQDYAKALEW 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138889 362 FSMAASKGNAIGLHGLGLLYFHGKGVPVNYGEALKYFQKAAEKGWPNAQFQLGFMYYSGSGVWKDYKLAFKYFYLASQSG 441
Cdd:COG0790   126 YEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQG 205

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1907138889 442 QPLAIYYLAEMYATGTGVLRSCRTAVELYKGVCEL 476
Cdd:COG0790   206 DADAQYNLGRLYLNGEGVEKDLEKALRWLRKAAEQ 240
TPR COG0790
TPR repeat [General function prediction only];
321-620 4.19e-38

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 141.60  E-value: 4.19e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138889 321 ALYYFLKAAKAGSANAMAFIGKMYFEGNAAAPQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPVNYGEALKYFQK 400
Cdd:COG0790    13 AAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFEK 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138889 401 AAEKGWPNAQFQLGFMYYSGSGVWKDYKLAFKYFYLASQSGQPLAIYYLAEMYATGTGVLRSCRTAVELYKgvcelghwa 480
Cdd:COG0790    93 AAEQGDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWYR--------- 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138889 481 ekfltayfaykdgdidssliqyallaemgyevaqsnsafileskkakilgkeklypmalllwnRAAIQGNAFARVKIGDY 560
Cdd:COG0790   164 ---------------------------------------------------------------KAAEQGDADAQYNLGVL 180

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138889 561 HYYGYGTKKDYETAATHYSIAADKHHsAQAMFNLAYMYEHGLGIAKDIHLARRLYDMAAQ 620
Cdd:COG0790   181 YENGRGVPKDPAKALEWYRKAAEQGD-ADAQYNLGRLYLNGEGVEKDLEKALRWLRKAAE 239
TPR COG0790
TPR repeat [General function prediction only];
316-478 3.06e-37

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 139.29  E-value: 3.06e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138889 316 QDYSKALYYFLKAAKAGSANAMAFIGKMYFEGNAAaPQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPVNYGEAL 395
Cdd:COG0790    45 AGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGV-PKDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGVPQDYAKAL 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138889 396 KYFQKAAEKGWPNAQFQLGFMYYSGSGVWKDYKLAFKYFYLASQSGQPLAIYYLAEMYATGTGVLRSCRTAVELYKGVCE 475
Cdd:COG0790   124 EWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAE 203


                  ...
gi 1907138889 476 LGH 478
Cdd:COG0790   204 QGD 206
TPR COG0790
TPR repeat [General function prediction only];
159-437 7.40e-31

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 121.19  E-value: 7.40e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138889 159 GMQNITAAIQLYESLAKEGSYKAQNALGFLSSYGIGMEYDQAKALIYYTFGSAGGSMMSQMILGYRYLSGinvlqnceva 238
Cdd:COG0790    43 AAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFEKAAEQGDAEAQYNLGLMYEEG---------- 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138889 239 lnhykkvadyiadkleksegipvekvrlterpenlssnseildwdiyqyykflaergdvqiqvslgqlhligrKGLDQDY 318
Cdd:COG0790   113 -------------------------------------------------------------------------LGVPQDY 119

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138889 319 SKALYYFLKAAKAGSANAMAFIGKMYFEGNaAAPQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPVNYGEALKYF 398
Cdd:COG0790   120 AKALEWYEKAAEQGDADAQYNLGLLYLNGE-GVPKDPAKAAEWYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWY 198

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1907138889 399 QKAAEKGWPNAQFQLGFMYYSGSGVWKDYKLAFKYFYLA 437
Cdd:COG0790   199 RKAAEQGDADAQYNLGRLYLNGEGVEKDLEKALRWLRKA 237
TPR COG0790
TPR repeat [General function prediction only];
124-331 1.09e-17

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 83.05  E-value: 1.09e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138889 124 QKQKTEAYTLFTRAANMGNLKAMEKMADAWLFGSFGMQNITAAIQLYESLAKEGSYKAQNALGFLSSYGIGMEYDQAKAL 203
Cdd:COG0790    80 PKDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAA 159

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907138889 204 IYYTFGSAGGSMMSQMILGYRYLSGINVLQNCEVAlnhykkvadyiadkleksegipvekvrlterpenlssnseildwd 283
Cdd:COG0790   160 EWYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKA--------------------------------------------- 194

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1907138889 284 iYQYYKFLAERGDVQIQVSLGQLHLIGRkGLDQDYSKALYYFLKAAKA 331
Cdd:COG0790   195 -LEWYRKAAEQGDADAQYNLGRLYLNGE-GVEKDLEKALRWLRKAAEQ 240
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 407-441 2.01e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 44.47  E-value: 2.01e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1907138889  407 PNAQFQLGFMYYSGSGVWKDYKLAFKYFYLASQSG 441
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 588-620 3.29e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 44.09  E-value: 3.29e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1907138889  588 AQAMFNLAYMYEHGLGIAKDIHLARRLYDMAAQ 620
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAE 33
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 371-405 5.35e-06

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 43.28  E-value: 5.35e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1907138889 371 AIGLHGLGLLYFHGKGVPVNYGEALKYFQKAAEKG 405
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 588-620 5.73e-06

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 43.28  E-value: 5.73e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1907138889 588 AQAMFNLAYMYEHGLGIAKDIHLARRLYDMAAQ 620
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAE 33
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 371-405 1.94e-05

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 41.78  E-value: 1.94e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1907138889  371 AIGLHGLGLLYFHGKGVPVNYGEALKYFQKAAEKG 405
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 443-478 2.29e-04

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 38.69  E-value: 2.29e-04
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1907138889  443 PLAIYYLAEMYATGTGVLRSCRTAVELYKGVCELGH 478
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 407-441 4.11e-04

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 38.27  E-value: 4.11e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1907138889 407 PNAQFQLGFMYYSGSGVWKDYKLAFKYFYLASQSG 441
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 551-586 2.05e-03

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 36.00  E-value: 2.05e-03
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1907138889  551 AFARVKIGDYHYYGYGTKKDYETAATHYSIAADKHH 586
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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