|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
765-1075 |
1.62e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.03 E-value: 1.62e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 765 EKADSRESYRAELQRLSEENLVLKSDLGKIQLELETSESKNEVQRQEIEVLKRDKEQ-------ACCDLEELSTQTQKYK 837
Cdd:TIGR02168 667 KTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEElsrqisaLRKDLARLEAEVEQLE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 838 DEMSQLNCRVLQLEGEPSGLHTQKEENHGAIQVLMKKLEEAGCREEQQGDQIQNLKIELERVNEECQYLRLSQAELTESL 917
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 918 EESRSQLYSVQLRLEAAQSQHGrivqRLQEQMSQLVpgARVAELQHLLNVKEEEARRLSAQQEEYRQQLKAREDQVEDAE 997
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIE----ELSEDIESLA--AEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 998 ARLRNVEWLLQEKVEELRKQFEKNTRSDLLLKELYVENAHLMKAV--------QLTEEKQRGAEKKNCVLEEKVRALNKL 1069
Cdd:TIGR02168 901 EELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLseeysltlEEAEALENKIEDDEEEARRRLKRLENK 980
|
....*.
gi 1720401257 1070 ISKMAP 1075
Cdd:TIGR02168 981 IKELGP 986
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
743-1052 |
7.19e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.42 E-value: 7.19e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 743 SESEMKDVKIKLLQLEDVVRALEKADSR--------ESYRAELQRLSEENLVLKSDLGKIQLELETSESKNEVQRQEIEV 814
Cdd:COG1196 220 EELKELEAELLLLKLRELEAELEELEAEleeleaelEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 815 LKRDKEQACCDLEELSTQTQKYKDEMSQLNCRVLQLEgepsglhTQKEENHGAIQVLMKKLEEAGCREEQQGDQIQNLKI 894
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELE-------EELEELEEELEEAEEELEEAEAELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 895 ELERVNEEcqylrlsQAELTESLEESRSQLYSVQLRLEAAQSQHGRIVQRLQEQMSQLvpGARVAELQHLLNVKEEEARR 974
Cdd:COG1196 373 ELAEAEEE-------LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEEL--EELEEALAELEEEEEEEEEA 443
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720401257 975 LSAQQEEyRQQLKAREDQVEDAEARLRNVEWLLQEKVEELRKQFEKNTRSDLLLKELYVENAHLMKAVQLTEEKQRGA 1052
Cdd:COG1196 444 LEEAAEE-EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR 520
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
746-1023 |
1.71e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 1.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 746 EMKDVKIKLLQLEDVVRALEkaDSRESYRAELQRLSEENLVLKSDLGKIQLELETSESKNEVQRQEIEVLKRDKEQACCD 825
Cdd:TIGR02168 233 RLEELREELEELQEELKEAE--EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 826 LEELSTQTQKYKDEMSQLNCRVLQLEGEpsgLHTQKEEnhgaIQVLMKKLEEAGCREEQQGDQIQNLKIELERVNEECQY 905
Cdd:TIGR02168 311 LANLERQLEELEAQLEELESKLDELAEE---LAELEEK----LEELKEELESLEAELEELEAELEELESRLEELEEQLET 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 906 LRLSQAELTESLEESRSQLYSVQLRLEAAQSQHGRIVQRLQEQMSQLVPgARVAELQHLLNVKEEEARRLSAQQEEYRQQ 985
Cdd:TIGR02168 384 LRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE-AELKELQAELEELEEELEELQEELERLEEA 462
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1720401257 986 LKAREDQVEDAEARLRNVEWLLQEK------VEELRKQFEKNTR 1023
Cdd:TIGR02168 463 LEELREELEEAEQALDAAERELAQLqarldsLERLQENLEGFSE 506
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
224-1018 |
2.99e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 2.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 224 ELLAQEEQFTAILNDYELKCRDLQDRNDELQAELEGLRLRLPRSRQSPAGTPGThrrripgrgpadnLFvgestpvSLET 303
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKE-------------LY-------ALAN 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 304 EIM-VEQMKEHYQELRMQLETKVNYYEKEIEVMKRNFEKDKKEMEQAfQLEVSVLEGQKADLEALYAKSQEVILGLKEQL 382
Cdd:TIGR02168 296 EISrLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAEL-EEKLEELKEELESLEAELEELEAELEELESRL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 383 QDAAQSPEPAPAGLAHCCAQALCTLAQRLEVEMHLRHQDQLLQIRQEAEEELNQKLSwlEAQHAACCESLSlqhqcEKDQ 462
Cdd:TIGR02168 375 EELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE--EAELKELQAELE-----ELEE 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 463 LLQTHLQRVKDLAAQLDLEKGRREEREQEVLAhcrrqqlkLQAVMSEEQARIcrsftlekeKLEQTYREQVEGLVQEAdv 542
Cdd:TIGR02168 448 ELEELQEELERLEEALEELREELEEAEQALDA--------AERELAQLQARL---------DSLERLQENLEGFSEGV-- 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 543 lRALLKNGTT------VVSDQQERTPS-----SMSLGPD-----SRQQPTARQAVS---------------PDGRTGAPA 591
Cdd:TIGR02168 509 -KALLKNQSGlsgilgVLSELISVDEGyeaaiEAALGGRlqavvVENLNAAKKAIAflkqnelgrvtflplDSIKGTEIQ 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 592 EWPGPEKAEGRDFPGQLCSIDAMPSPTPTLLSRRSSeNLGVRDNHQrplNAEEGAIPKEPEPSARTLTGQGQKLPLPVHP 671
Cdd:TIGR02168 588 GNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLG-GVLVVDDLD---NALELAKKLRPGYRIVTLDGDLVRPGGVITG 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 672 QMLEPSLGTTALDRKAASVGVQGQASEGPVGDGEGVQEAWLQFRGEATRMRpslpcselpnpQEATVMPAMSESEMKDVK 751
Cdd:TIGR02168 664 GSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEEL-----------EQLRKELEELSRQISALR 732
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 752 IKLLQLEDVVRALEKADSRESyrAELQRLSEENLVLKSDLGKIQLELETSESKNEVQRQEIEVLKRDKEQACCDLEELST 831
Cdd:TIGR02168 733 KDLARLEAEVEQLEERIAQLS--KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRA 810
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 832 QTQKYKDEMSQLNCRVLQLEGEPSG-------LHTQKEENHGAIQVLMKKLEEAGCREEQQGDQIQNLKIELERVNEECQ 904
Cdd:TIGR02168 811 ELTLLNEEAANLRERLESLERRIAAterrledLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA 890
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 905 YLRLSQAELTES--------------LEESRSQLYSVQLRLEAAQSQHGRIVQRLQE--QMSQLVPGARVAELQHLLNVK 968
Cdd:TIGR02168 891 LLRSELEELSEElreleskrselrreLEELREKLAQLELRLEGLEVRIDNLQERLSEeySLTLEEAEALENKIEDDEEEA 970
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720401257 969 EEEARRLSAQ-----------QEEYrQQLKARED----QVEDAEARLRNVEWLLQEKVEELRKQF 1018
Cdd:TIGR02168 971 RRRLKRLENKikelgpvnlaaIEEY-EELKERYDfltaQKEDLTEAKETLEEAIEEIDREARERF 1034
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
744-1072 |
9.94e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 59.65 E-value: 9.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 744 ESEMKDVKIKLLQLEDVVRALEKADSR-ESYRAELQRLSEENLVLKSDLGKIQLELETSESKNEVQRQEIEVLKRDKEQA 822
Cdd:TIGR04523 186 QKNIDKIKNKLLKLELLLSNLKKKIQKnKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKI 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 823 CCDLEELSTQTQKYKDEMSQLNCRVLQLEGEPSGLHTQKEEN-----HGAIQVLMKKLEEAGCREEQQGDQIQNLKIELE 897
Cdd:TIGR04523 266 KKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDwnkelKSELKNQEKKLEEIQNQISQNNKIISQLNEQIS 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 898 RVNEECQYLRLSQAELTESLEESRSQLYSVQ-------LRLEAAQSQHGRIVQRL--QEQMSQLVPGaRVAELQHLLNVK 968
Cdd:TIGR04523 346 QLKKELTNSESENSEKQRELEEKQNEIEKLKkenqsykQEIKNLESQINDLESKIqnQEKLNQQKDE-QIKKLQQEKELL 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 969 EEEARRLSAQQEEYRQQLKAREDQVEDAEARLRNVEWL---LQEKVEELRKQFEKN-TRSDLLLKELYVENAHLMK---A 1041
Cdd:TIGR04523 425 EKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTresLETQLKVLSRSINKIkQNLEQKQKELKSKEKELKKlneE 504
|
330 340 350
....*....|....*....|....*....|.
gi 1720401257 1042 VQLTEEKQRGAEKKNCVLEEKVRALNKLISK 1072
Cdd:TIGR04523 505 KKELEEKVKDLTKKISSLKEKIEKLESEKKE 535
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
873-1054 |
1.67e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 1.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 873 KKLEEAGCREEQQGDQIQNLKIELERVNEECQYLRLSQAELTESLEESRSQLYSVQLRLEAAQSQHGRIVQRLQEQMSQL 952
Cdd:COG1196 225 LEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDI 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 953 VPGA-RVAELQHLLNVKEEEARRLSAQQEEYRQQLKAREDQVEDAEARLRNVEWLLQEKVEELRKQFEKNTRSDLLLKEL 1031
Cdd:COG1196 305 ARLEeRRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEEL 384
|
170 180
....*....|....*....|...
gi 1720401257 1032 YVENAHLMKAVQLTEEKQRGAEK 1054
Cdd:COG1196 385 AEELLEALRAAAELAAQLEELEE 407
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
771-1077 |
2.49e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 2.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 771 ESYRAELQRLSEENLVLKSDLGKIQLELETSES----KNEVQRQEIEVLKRDKEQACCDLEELSTQTQKYKDEMSQLNCR 846
Cdd:TIGR02168 182 ERTRENLDRLEDILNELERQLKSLERQAEKAERykelKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 847 VLQLEGEPSGLHTQKEENHGAIQVLMKKLEEAGC-------REEQQGDQIQNLKIELERVNEECQYLRLSQAELTESLEE 919
Cdd:TIGR02168 262 LQELEEKLEELRLEVSELEEEIEELQKELYALANeisrleqQKQILRERLANLERQLEELEAQLEELESKLDELAEELAE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 920 SRSQLYSVQLRLEAAQSQHGRIVQRLQEQMSqlvpgaRVAELQHLLNVKEEEARRLSAQQEEYRQQLKAREDQVEDAEAR 999
Cdd:TIGR02168 342 LEEKLEELKEELESLEAELEELEAELEELES------RLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDR 415
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720401257 1000 LRNvewlLQEKVEELRKQFEKNTRSDLLLkELYVENAHLMKAVQLTEEKQRGAEKKNCVLEEKVRALNKLISKMAPAS 1077
Cdd:TIGR02168 416 RER----LQQEIEELLKKLEEAELKELQA-ELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQ 488
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
743-1079 |
2.66e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 2.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 743 SESEMKDVKIKLLQLEDVVRAL-----------EKADSRESYRAELQRLseenlvlksDLGKIQLELETSESKNEVQRQE 811
Cdd:COG1196 177 AERKLEATEENLERLEDILGELerqleplerqaEKAERYRELKEELKEL---------EAELLLLKLRELEAELEELEAE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 812 IEVLKRDKEQACCDLEELSTQTQKYKDEMSQLNCRVLQLEGEPSGLHTQKEENHGAIQVLMKKLEEAgcreeqqgdqiQN 891
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL-----------EE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 892 LKIELERVNEEcqyLRLSQAELTESLEESRSQLYSVQLRLEAAQSQHGRIVQRLQEQMSQLvpgarvAELQHLLNVKEEE 971
Cdd:COG1196 317 RLEELEEELAE---LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL------AEAEEELEELAEE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 972 ARRLSAQQEEYRQQLKAREDQVEDAEARLRNVEWLLQEKVEELRKQFEKNTRSDLLLKELYVENAHLMKAVQLTEEKQRG 1051
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
330 340
....*....|....*....|....*...
gi 1720401257 1052 AEKKNCVLEEKVRALNKLISKMAPASLS 1079
Cdd:COG1196 468 LLEEAALLEAALAELLEELAEAAARLLL 495
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
749-1073 |
1.33e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 1.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 749 DVKIK--LLQLEDVVRALEKADSRES-YRAELQRLSEEN------LVLKSDLGKIQL-----ELETSESKNEVQRQEIEV 814
Cdd:TIGR02169 169 DRKKEkaLEELEEVEENIERLDLIIDeKRQQLERLRRERekaeryQALLKEKREYEGyellkEKEALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 815 LKRDKEQACCDLEELSTQTQKYKDEMSQLNCRVLQL-EGEPSGLHTQKEENHGAIQVLMKKLEEAGCREEQQGDQIQNLK 893
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 894 IELERVNEEcqylrlsQAELTESLEESRSQLYSVQLRLEAAQSQHGRIVQRLQE----------QMSQLVP-----GARV 958
Cdd:TIGR02169 329 AEIDKLLAE-------IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEvdkefaetrdELKDYREkleklKREI 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 959 AELQHLLNVKEEEARRLSAQQEEYRQQLKAREDQV-------EDAEARLRNVEWLLQEKVEELRKQFEK--NTRSDL--- 1026
Cdd:TIGR02169 402 NELKRELDRLQEELQRLSEELADLNAAIAGIEAKIneleeekEDKALEIKKQEWKLEQLAADLSKYEQElyDLKEEYdrv 481
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1720401257 1027 --LLKELYVENAHLMKAVQLTEEKQRGAEKKNCVLEEKVRALNKLISKM 1073
Cdd:TIGR02169 482 ekELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQL 530
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
762-1030 |
5.76e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 5.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 762 RALEKADSRESYRAELQRLSEENLVLKSDLGKIQLELETSESKNEVQRQEIEVLKRDKEQACCDLEELSTQTQKYKDEMS 841
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 842 QLNCRVLQLEGEPSglhtQKEENHGAIQVLMKKLEeagcrEEQQGDQIQNLKIELERVNEEcqylrlsQAELTESLEESR 921
Cdd:TIGR02169 755 NVKSELKELEARIE----ELEEDLHKLEEALNDLE-----ARLSHSRIPEIQAELSKLEEE-------VSRIEARLREIE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 922 SQLYSVQLRLEAAQSQHGRIVQRLQEQMSQLVP-GARVAELQHLLNVKEEEARRLSAQQEEYRQQLKAREDQVEDAEARL 1000
Cdd:TIGR02169 819 QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSiEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQL 898
|
250 260 270
....*....|....*....|....*....|
gi 1720401257 1001 RNvewlLQEKVEELRKQFEKNTRSDLLLKE 1030
Cdd:TIGR02169 899 RE----LERKIEELEAQIEKKRKRLSELKA 924
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
762-1072 |
6.01e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 6.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 762 RALEKADSRESYRAELQRLSEENLVLKSDLGKIQLELETSESKNEVQRQEIEVLKRDKEQACCDLEELSTQTQKYKDEMS 841
Cdd:TIGR02169 703 RLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALN 782
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 842 QLNCR-----VLQLEGEPSGLHTQKEENHGAIQVLMKKLEEAGCREEQQGDQIQNLKIELERVNEECQYLRLSQAELTES 916
Cdd:TIGR02169 783 DLEARlshsrIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGK 862
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 917 LEESRSQLYSVQLRLEAAQSQHGRI---VQRLQEQMSQLVPGARVAELQhlLNVKEEEARRLSAQQEEYRQQLKAREDQV 993
Cdd:TIGR02169 863 KEELEEELEELEAALRDLESRLGDLkkeRDELEAQLRELERKIEELEAQ--IEKKRKRLSELKAKLEALEEELSEIEDPK 940
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 994 ED------AEARLRNVEWLLQEKVEELRKQFEKNtrsdlllkelyvenahlMKAVQLTEEKQR---GAEKKNCVLEEKVR 1064
Cdd:TIGR02169 941 GEdeeipeEELSLEDVQAELQRVEEEIRALEPVN-----------------MLAIQEYEEVLKrldELKEKRAKLEEERK 1003
|
....*...
gi 1720401257 1065 ALNKLISK 1072
Cdd:TIGR02169 1004 AILERIEE 1011
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
860-1074 |
1.82e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 1.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 860 QKEENHGAIQVLMKKLEEAGCREEQQGDQIQNLKIELERVNEECQYLRLSQAELTESLEESRSQLYSVQLRLEAAQSQHG 939
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 940 RIVQRLQEQMSQLVPGARVAELQHLLNVKE-EEARRLSAQQEEYRQQLKAREDQVEDAEARLRNVEWLLQEKVEELRKQF 1018
Cdd:COG4942 101 AQKEELAELLRALYRLGRQPPLALLLSPEDfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALL 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1720401257 1019 EKNTRSDLLLKELYVENAHLMKAVQLTEEKQRGAEKKncvLEEKVRALNKLISKMA 1074
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAE---LQQEAEELEALIARLE 233
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
80-548 |
3.03e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.48 E-value: 3.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 80 QLVQERDKARQDLEKAEKRNLDFVREMDDCHSALEQLTEK---KIKHLEQEYRGRLSLLRSEVEMERElfWEQARRQRAV 156
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEleeAEAELAEAEEALLEAEAELAEAEEE--LEELAEELLE 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 157 LEQDVGRLQAEETSLREKLTLALKENSRLQKEIIEVVEKLSDSEKLVLRLQSDLQFVLKDKLepqsmELLAQEEQFTAIL 236
Cdd:COG1196 391 ALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA-----ELEEEEEALLELL 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 237 NDYELKCRDLQDRNDELQAELEGLRLRLPRSRQSPAGTPGthrrRIPGRGPADNLFVGESTPVSLETEIMVEQMKEHYQE 316
Cdd:COG1196 466 AELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEG----FLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALE 541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 317 LRMQLETKVNYYEKEIEVMKR-NFEKDKKEMEQAFQLEVSVLEGQKADLEALYAKSQEVILGLKEQLQDAAQSPEPAPAG 395
Cdd:COG1196 542 AALAAALQNIVVEDDEVAAAAiEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDT 621
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 396 LahccAQALCTLAQRLEVEMHLRHQDQLLQIRQEAEEELNQKLSWLEAQHAACCESLSLQHQCEKDQLLQTHLQRVKDLA 475
Cdd:COG1196 622 L----LGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEE 697
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720401257 476 AQLDLEKGRREEREQEVLAHCRRQQLKLQAVMSEEQARICRSFTLEKEKLEQTYREQVEGLVQEADVLRALLK 548
Cdd:COG1196 698 ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELE 770
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
744-987 |
4.95e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 4.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 744 ESEMKDVKIKLLQLEDVVRALEKA-----------------DSRESYRAELQRLSEENLVLKSDLGKIQLELETSESKNE 806
Cdd:TIGR02169 757 KSELKELEARIEELEEDLHKLEEAlndlearlshsripeiqAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ 836
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 807 VQRQEIEVLKRDKEQACCDLEELSTQTQKYKDEMSQLNCRVLQLEGEPSGLHTQKEENHGAIQVLMKKLEEAGCREEQQG 886
Cdd:TIGR02169 837 ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKR 916
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 887 DQIQNLKIELERVNEECQYLRLSQAELTESLEESRS--QLYSVQLRLEAAQSQHGRIVQRLQEQMSQLVpgARVAELQHL 964
Cdd:TIGR02169 917 KRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSleDVQAELQRVEEEIRALEPVNMLAIQEYEEVL--KRLDELKEK 994
|
250 260
....*....|....*....|...
gi 1720401257 965 LNVKEEEARRLSAQQEEYRQQLK 987
Cdd:TIGR02169 995 RAKLEEERKAILERIEEYEKKKR 1017
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
776-1073 |
1.12e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.63 E-value: 1.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 776 ELQRLSEENLVLKSDLGKIQLELETSESK-----NEVQ--RQEIEVLKRDKEQACC------------DLEELSTQTQKY 836
Cdd:TIGR04523 254 QLNQLKDEQNKIKKQLSEKQKELEQNNKKikeleKQLNqlKSEISDLNNQKEQDWNkelkselknqekKLEEIQNQISQN 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 837 KDEMSQLNCRVLQLEGEPSGLHTQKEENHGAIQVLMKKLEEAGCREEQQGDQIQNLKIELERVNEECQylrlSQAELTES 916
Cdd:TIGR04523 334 NKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQ----NQEKLNQQ 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 917 LEEsrsQLYSVQLRLEAAQSQHGRIVQRLQEQMSQLvpgarvAELQHLLNVKEEEARRLSAQQEEYRQQLKAREDQVEDA 996
Cdd:TIGR04523 410 KDE---QIKKLQQEKELLEKEIERLKETIIKNNSEI------KDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKI 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 997 EARLRNVEWLLQEKVEELRKQFEKNTRSDLLLKELYVENAHLMKAVQ-LTEEKQR---------------GAEKKNCVLE 1060
Cdd:TIGR04523 481 KQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEkLESEKKEkeskisdledelnkdDFELKKENLE 560
|
330
....*....|...
gi 1720401257 1061 EKVRALNKLISKM 1073
Cdd:TIGR04523 561 KEIDEKNKEIEEL 573
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
741-1064 |
1.48e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 741 AMSESEMKDVKIKLLQLEDVVRALEKADSRESYRAELQRLSEEnlVLKSDLGKIQLELETSESKNEVQRQEIEvlKRDKE 820
Cdd:PTZ00121 1502 AKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEE--KKKADELKKAEELKKAEEKKKAEEAKKA--EEDKN 1577
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 821 QACCDLEELSTQTQKYKDEMSQLNCRVLQLEGEPsgLHTQKEENHGAIQVlmKKLEEAGCREEQQGDQIQNLKIELERVN 900
Cdd:PTZ00121 1578 MALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE--AKKAEEAKIKAEEL--KKAEEEKKKVEQLKKKEAEEKKKAEELK 1653
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 901 EECQYLRLSQAELTESLEESRsqlysvqlrleaaqsqhgrivqRLQEQMSQLVPGARVAELQhlLNVKEEEARRLsaqqE 980
Cdd:PTZ00121 1654 KAEEENKIKAAEEAKKAEEDK----------------------KKAEEAKKAEEDEKKAAEA--LKKEAEEAKKA----E 1705
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 981 EYRqqlKAREDQVEDAEaRLRNVEWLLQEKVEELRKQFEKNTRSdllLKELYVENAHLMKAVQLTEEKQRGAE----KKN 1056
Cdd:PTZ00121 1706 ELK---KKEAEEKKKAE-ELKKAEEENKIKAEEAKKEAEEDKKK---AEEAKKDEEEKKKIAHLKKEEEKKAEeirkEKE 1778
|
....*...
gi 1720401257 1057 CVLEEKVR 1064
Cdd:PTZ00121 1779 AVIEEELD 1786
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
72-269 |
2.34e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.51 E-value: 2.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 72 RSCRGQVDQLVQERDKARQDLEKAEKRNLDFVREMDDCHSALEQLTEKKIKHLEQEYRGRLSLLRSEVEMER-ELFWEQA 150
Cdd:TIGR02168 715 EQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEElEAQIEQL 794
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 151 RRQRAVLEQDVGRLQAEETSLREK---------------------LTLALKENSRLQKEIIEVVEKLSDSEKLVLRLQSD 209
Cdd:TIGR02168 795 KEELKALREALDELRAELTLLNEEaanlrerleslerriaaterrLEDLEEQIEELSEDIESLAAEIEELEELIEELESE 874
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720401257 210 LQFVL--KDKLEPQSMELLAQEEQFTAILNDYELKCRDLQDRNDELQAELEGLRLRLPRSRQ 269
Cdd:TIGR02168 875 LEALLneRASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEV 936
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
763-1013 |
2.47e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 2.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 763 ALEKADSRESYRAELQRLSEENLVLKSDLGKIQLELETSESKNEVQRQEIEVLKRdkeqaccdleelstQTQKYKDEMSQ 842
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALAR--------------RIRALEQELAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 843 LNCRVLQLEGEPSGLHTQKEENHGAIQVLMKKLEEAGCREEQQGDQIQNLKIELERVNEECQYLRLSQAELTESLEESRS 922
Cdd:COG4942 81 LEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 923 QLYSVQLRLEAAQSQHGRIVQRLQEQMsqlvpgarvAELQHLLNVKEEEARRLSAQQEEYRQQLKAREDQVEDAEARLRN 1002
Cdd:COG4942 161 ELAALRAELEAERAELEALLAELEEER---------AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
250
....*....|.
gi 1720401257 1003 VEWLLQEKVEE 1013
Cdd:COG4942 232 LEAEAAAAAER 242
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
77-269 |
3.73e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.01 E-value: 3.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 77 QVDQLVQERDKARQDLEKAEKRNLDFVREMDDCHSALEQLTEK--KIKHLEQEYRGRLSLLRSEVE-MERELFWEQARR- 152
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLEleELELELEEAQAEEYELLAELArLEQDIARLEERRr 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 153 -----------QRAVLEQDVGRLQAEETSLREKLTLALKENSRLQKEIIEVVEKLSDSEKLVLRLQSDLQFVLKDKLepq 221
Cdd:COG1196 313 eleerleeleeELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL--- 389
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1720401257 222 smELLAQEEQFTAILNDYELKCRDLQDRNDELQAELEGLRLRLPRSRQ 269
Cdd:COG1196 390 --EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEE 435
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
757-1071 |
7.57e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.96 E-value: 7.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 757 LEDVVRALEKAdsRESYRAELQRLSEENLVLKSDLGKIQLELETSESKnevqRQEIEVLKRDKEQACCDLEELSTQTQKY 836
Cdd:PRK02224 204 LHERLNGLESE--LAELDEEIERYEEQREQARETRDEADEVLEEHEER----REELETLEAEIEDLRETIAETEREREEL 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 837 KDEMSQLNCRVLQLEGEPSGLHTQKEENHGAIQVLMKKLEEAGCREEQQGDQIQNLKIELERVNEECQYLRLSQAELTES 916
Cdd:PRK02224 278 AEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEER 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 917 LEESRSQLYSVQLRLEAAQSQHGRIVQRLQEQMSQLVPG-ARVAELQHLLNVKEEEARRLSAQQEEYRQQLKAREDQVED 995
Cdd:PRK02224 358 AEELREEAAELESELEEAREAVEDRREEIEELEEEIEELrERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRT 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 996 AEARLRNVEWLLQE--------------KVEELRKQFEKNTRSDLLLKELYVENAHLMKAVQLTEEKQRgAEKKNCVLEE 1061
Cdd:PRK02224 438 ARERVEEAEALLEAgkcpecgqpvegspHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVE-AEDRIERLEE 516
|
330
....*....|
gi 1720401257 1062 KVRALNKLIS 1071
Cdd:PRK02224 517 RREDLEELIA 526
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
887-1074 |
8.52e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 8.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 887 DQIQNLKIELERVNEECQYLRLSQAELTESLEESR--SQLYSVQLRLEAAQSQhgriVQRLQEQMSQLV-PGARVAELQH 963
Cdd:COG4913 617 AELAELEEELAEAEERLEALEAELDALQERREALQrlAEYSWDEIDVASAERE----IAELEAELERLDaSSDDLAALEE 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 964 LLNVKEEEARRLSAQQEEYRQQLKAREDQVEDAEARLRNVEWLLQEKVEelRKQFEKNTRSDLLLKELYVENAHLMKAVQ 1043
Cdd:COG4913 693 QLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAED--LARLELRALLEERFAAALGDAVERELREN 770
|
170 180 190
....*....|....*....|....*....|.
gi 1720401257 1044 LTEEKQRGAEKKNcvleekvRALNKLISKMA 1074
Cdd:COG4913 771 LEERIDALRARLN-------RAEEELERAMR 794
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
801-1017 |
1.88e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 801 SESKNEVQRQEIEVLKRDKEQACCDLEELSTQTQKYKDEMSQLNCRVLQLEGEPSGLHTQKEENHGAIQVLMKKLEEAGC 880
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 881 REEQQGDQIQNLKIELERVNEECQYLRLSQAEltESLEESRSQLYsvqlrleaaqsqHGRIVQRLQEQMSQLVP-GARVA 959
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLALLLSPE--DFLDAVRRLQY------------LKYLAPARREQAEELRAdLAELA 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1720401257 960 ELQHLLNVKEEEARRLSAQQEEYRQQLKAREDQVEDAEARLRNVEWLLQEKVEELRKQ 1017
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
809-1019 |
1.94e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 1.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 809 RQEIEVLKRDKEQaccdLEELSTQTQKYKDEMSQLNcrVLQLEGEPSGLHTQKEenhgaiqvlmkkleeagcREEQQGDQ 888
Cdd:COG4913 241 HEALEDAREQIEL----LEPIRELAERYAAARERLA--ELEYLRAALRLWFAQR------------------RLELLEAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 889 IQNLKIELERVNEECQYLRLSQAELTESLEESRSQLYSV--------QLRLEAAQSQHGRIVQRLQEQMsqlvpgARVAE 960
Cdd:COG4913 297 LEELRAELARLEAELERLEARLDALREELDELEAQIRGNggdrleqlEREIERLERELEERERRRARLE------ALLAA 370
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1720401257 961 LQHLLNVKEEEARRLSAQQEEYRQQLKAREDQVEDAEARLRNVEWLLQEKVEELRKQFE 1019
Cdd:COG4913 371 LGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIA 429
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
78-444 |
2.99e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 2.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 78 VDQLVQERDKARQDLEKAEKRNLDFVREMDDCHSALEQLTEKKIKHLeqEYRGRLSLLRSEVEMERELFWEQARRQRAVL 157
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAE--RYQALLKEKREYEGYELLKEKEALERQKEAI 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 158 EQDVGRLQAEETSLREKLtlalkenSRLQKEIIEVVEKLSDSEKLVLRLQSDLQFVLKDKLEpqsmELLAQEEQFTAILN 237
Cdd:TIGR02169 243 ERQLASLEEELEKLTEEI-------SELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIG----ELEAEIASLERSIA 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 238 DYELKCRDLQDRNDELQAELEGLRLRLPRSRQSPAgtpGTHRRRIPGRGPADNLfvgESTPVSLETEImvEQMKEHYQEL 317
Cdd:TIGR02169 312 EKERELEDAEERLAKLEAEIDKLLAEIEELEREIE---EERKRRDKLTEEYAEL---KEELEDLRAEL--EEVDKEFAET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 318 R---MQLETKVNYYEKEIEVMKRNFEKDKKEMEQAFQlEVSVLEGQKADLEALYAKSQEVILGLKEQLQDAAQspepapa 394
Cdd:TIGR02169 384 RdelKDYREKLEKLKREINELKRELDRLQEELQRLSE-ELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW------- 455
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 1720401257 395 glahccaQALCTLAQRLEVEMHLRHQDQLLQIRQEAEEELNQKLSWLEAQ 444
Cdd:TIGR02169 456 -------KLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ 498
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
75-264 |
3.09e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 3.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 75 RGQVDQLVQERDKARQDLEKAEKRNLDFVREMDDCHSALEQLTEKKIKHLEQ--EYRGRLSLLRSEVEMERELFwEQARR 152
Cdd:TIGR02168 287 QKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEElaELEEKLEELKEELESLEAEL-EELEA 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 153 QRAVLEQDVGRLQAEETSLREKLTLALKENSRLQKEIIEVVEKLSDSEKLVLRLQSDLQFVLKDKLEPQSMELLAQEEQF 232
Cdd:TIGR02168 366 ELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEEL 445
|
170 180 190
....*....|....*....|....*....|..
gi 1720401257 233 TAILNDYELKCRDLQDRNDELQAELEGLRLRL 264
Cdd:TIGR02168 446 EEELEELQEELERLEEALEELREELEEAEQAL 477
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
756-1074 |
3.55e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.95 E-value: 3.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 756 QLEDVVRALEKADS-RESYRAELQRLSEENLVLKSDLGKIQLELETSESKNEVQRQEIEVLkrDKEQACCDLEELSTQT- 833
Cdd:PRK04863 363 RLEEQNEVVEEADEqQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQAL--ERAKQLCGLPDLTADNa 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 834 ----QKYKDEMSQLNCRVLQLEgepsglhtQKeenhgaiqvlMKKLEEAGCREEQQGDQIQNLKIELERvNEECQYLRls 909
Cdd:PRK04863 441 edwlEEFQAKEQEATEELLSLE--------QK----------LSVAQAAHSQFEQAYQLVRKIAGEVSR-SEAWDVAR-- 499
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 910 qaeltESLEESRSQLYSVQlRLEAAQSQHGRIVQRLQEQMSQLvpgARVAELQHLLNVKEEEARRLSAQQEEYRQQLKAR 989
Cdd:PRK04863 500 -----ELLRRLREQRHLAE-QLQQLRMRLSELEQRLRQQQRAE---RLLAEFCKRLGKNLDDEDELEQLQEELEARLESL 570
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 990 EDQVEDAEAR---LRNVEWLLQEKVEELRKQFEKNTRSDLLLKELY------VENAH-LMKAVQLTEEKQRGAEKKNCVL 1059
Cdd:PRK04863 571 SESVSEARERrmaLRQQLEQLQARIQRLAARAPAWLAAQDALARLReqsgeeFEDSQdVTEYMQQLLERERELTVERDEL 650
|
330
....*....|....*
gi 1720401257 1060 EEKVRALNKLISKMA 1074
Cdd:PRK04863 651 AARKQALDEEIERLS 665
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
883-1020 |
4.64e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 4.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 883 EQQGDQIQNLKIELERVNEECQYLRLSQAE-----LTESLEESRSQLYSVQLRLEAAQSQHGRI---VQRLQEQMSQlVP 954
Cdd:COG4913 258 RELAERYAAARERLAELEYLRAALRLWFAQrrlelLEAELEELRAELARLEAELERLEARLDALreeLDELEAQIRG-NG 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 955 GARVAELQHLLNVKEEEARRLSAQQEEY---------------------RQQLKAREDQVEDAEARLRNVEWLLQEKVEE 1013
Cdd:COG4913 337 GDRLEQLEREIERLERELEERERRRARLeallaalglplpasaeefaalRAEAAALLEALEEELEALEEALAEAEAALRD 416
|
....*..
gi 1720401257 1014 LRKQFEK 1020
Cdd:COG4913 417 LRRELRE 423
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
869-1066 |
5.21e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 5.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 869 QVLMKKLE-EAGCREEQQGDQIQNLKIELERVNEECQYLRLSQ---AELTESLEESRSQLYSVQLRLEAAQSQhgriVQR 944
Cdd:COG4717 45 AMLLERLEkEADELFKPQGRKPELNLKELKELEEELKEAEEKEeeyAELQEELEELEEELEELEAELEELREE----LEK 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 945 LQEQMSQLVPGARVAELQHLLNVKEEEARRLSAQQEEYRQ---QLKAREDQVEDAEARLRN--------VEWLLQEKVEE 1013
Cdd:COG4717 121 LEKLLQLLPLYQELEALEAELAELPERLEELEERLEELREleeELEELEAELAELQEELEElleqlslaTEEELQDLAEE 200
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1720401257 1014 LRKQFEKNTRSDLLLKELYVENAHLMKAVQLTEEKQRGAEKKNCVLEEKVRAL 1066
Cdd:COG4717 201 LEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLL 253
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
77-261 |
6.91e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.89 E-value: 6.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 77 QVDQLVQERDKARQDLEKAEKRNLDFVREMDDCHSALEQLTEKKikhleQEYRGRLSLLRSEvemerelfWEQARRQRAV 156
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL-----EELESRLEELEEQ--------LETLRSKVAQ 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 157 LEQDVGRLQAEETSLREKLTLALKENSRLQKEIIEVVEKLSDSEKLVLRLQSDLQFVLKDKLEPQSMELLAQEEQFTAIL 236
Cdd:TIGR02168 391 LELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREEL 470
|
170 180
....*....|....*....|....*
gi 1720401257 237 NDYELKCRDLQDRNDELQAELEGLR 261
Cdd:TIGR02168 471 EEAEQALDAAERELAQLQARLDSLE 495
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
765-1072 |
7.41e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.47 E-value: 7.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 765 EKADSRESYRAELQRLSEENLVLKSDLGKIQLELETSESKNEVQRQEIEVLKRDKEQACCDLEELSTQTQKYKDEMSQLN 844
Cdd:TIGR04523 367 EKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLT 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 845 CRVLQLEGEPSGLHTQKEENHGAIQVLMKKLEEAGCREEQQGDQIQNLKIELERVNEECQYLRLSQAELTE---SLEESR 921
Cdd:TIGR04523 447 NQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKkisSLKEKI 526
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 922 SQLYSVQLRLEAAQSQHGRIVQRLQEQMSQLVPGARVAELQHLLNVKEEEARRLSAQQEEYRQQLKAREDQVEDAEARLR 1001
Cdd:TIGR04523 527 EKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIE 606
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720401257 1002 NVEWLLQEKVEELRKQFEKNTRSDLLLKEL------YVENAHLMK-AVQLTEEKQRGAEKKNCVLEEKVRALNKLISK 1072
Cdd:TIGR04523 607 EKEKKISSLEKELEKAKKENEKLSSIIKNIkskknkLKQEVKQIKeTIKEIRNKWPEIIKKIKESKTKIDDIIELMKD 684
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
728-1069 |
1.07e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 728 SELPNPQEATVMPAMSESEMKDVKIKLLQLEDVVRALEKADSRESYRAELQRLSEEnlVLKSDLGKIQLE----LETSES 803
Cdd:PTZ00121 1374 EEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEE--KKKADEAKKKAEeakkADEAKK 1451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 804 KNEVQRQEIEVLKRDKEQACCDLEELSTQTQKYKDEMSQlncRVLQLEGEPSGLHTQKEENHGAIQvlMKKLEEAGCREE 883
Cdd:PTZ00121 1452 KAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKK---KAEEAKKKADEAKKAAEAKKKADE--AKKAEEAKKADE 1526
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 884 QQGDQIQNLKIELERVNEECQYLRLSQAELTESLEESRS----------QLYSVQLRLEAAQSQHGRIVQRLQEQMSQLV 953
Cdd:PTZ00121 1527 AKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKaeeakkaeedKNMALRKAEEAKKAEEARIEEVMKLYEEEKK 1606
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 954 PGARVAELQHLLNVKEEEARRLSAQQEEYRQQLKAREDQVEDAEaRLRNVEWLLQEKVEELRKQFEKNTRSDLLLKELYV 1033
Cdd:PTZ00121 1607 MKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE-ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEE 1685
|
330 340 350
....*....|....*....|....*....|....*.
gi 1720401257 1034 ENAHLMKAVQLTEEKQRGAEKKNCVLEEKVRALNKL 1069
Cdd:PTZ00121 1686 DEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL 1721
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
744-1020 |
1.26e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.74 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 744 ESEMKDVKIKLLQLEDVVRALEKADSRESYRAELQRLSEENLVLKSDLGKIQLE-LETSESKNEVQRQEIEVLKRDKEQA 822
Cdd:PRK03918 465 EKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEeLEKKAEEYEKLKEKLIKLKGEIKSL 544
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 823 CCDLEELstqtQKYKDEMSQLNCRVLQLEGEPSGLHTQ-KEENHGAIQVL---MKKLEEAGCREEQQGDQIQNLKIELER 898
Cdd:PRK03918 545 KKELEKL----EELKKKLAELEKKLDELEEELAELLKElEELGFESVEELeerLKELEPFYNEYLELKDAEKELEREEKE 620
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 899 VNEECQYLRLSQAELTE---SLEESRSQLYsvQLRLEAAQSQHGRIVQRLQEqMSQLVPGARvAELQHLLNVKEEEARRL 975
Cdd:PRK03918 621 LKKLEEELDKAFEELAEtekRLEELRKELE--ELEKKYSEEEYEELREEYLE-LSRELAGLR-AELEELEKRREEIKKTL 696
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1720401257 976 saqqeeyrQQLKAREDQVEDAEARLRNVEWLLqEKVEELRKQFEK 1020
Cdd:PRK03918 697 --------EKLKEELEEREKAKKELEKLEKAL-ERVEELREKVKK 732
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
61-263 |
1.26e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 61 HGPRRAFRMA---GRSCRGQVDQLVQERDKARQDLEKAEKRnldfvreMDDCHSALEQLTEKKikhleQEYRGRLSLLRS 137
Cdd:COG4913 592 KDDRRRIRSRyvlGFDNRAKLAALEAELAELEEELAEAEER-------LEALEAELDALQERR-----EALQRLAEYSWD 659
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 138 EVEM---ERELfwEQARRQR----------AVLEQDVGRLQAEETSLREKLTLALKENSRLQKEIIEVVEKLSDSEKLVL 204
Cdd:COG4913 660 EIDVasaEREI--AELEAELerldassddlAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLE 737
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1720401257 205 RLQSDLQFVLKDKLEPQSmELLAQEEQFTAILNDYELKCRDLQDRNDELQAELEGLRLR 263
Cdd:COG4913 738 AAEDLARLELRALLEERF-AAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
734-1065 |
1.73e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 734 QEATVMPAMSESEMKDVKIKLLQLEDVVRALEKADSRESYRAE-LQRLSEEnlVLKSDLGKIQLElETSESKNEVQRQEI 812
Cdd:PTZ00121 1339 EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADaAKKKAEE--KKKADEAKKKAE-EDKKKADELKKAAA 1415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 813 EVLKRDKEQACCDLEELSTQTQKYKDEMSQLNcrvlqlEGEPSGLHTQKEENhgaiqvLMKKLEEAGCREEQQGDQIQNL 892
Cdd:PTZ00121 1416 AKKKADEAKKKAEEKKKADEAKKKAEEAKKAD------EAKKKAEEAKKAEE------AKKKAEEAKKADEAKKKAEEAK 1483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 893 KI-ELERVNEECQylrlSQAELTESLEESRSQLYSVQLRLEAAQSQHGRIVQ--RLQEQMSQLVPGARVAELQHLLNVKE 969
Cdd:PTZ00121 1484 KAdEAKKKAEEAK----KKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEeaKKADEAKKAEEKKKADELKKAEELKK 1559
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 970 EEARRLSAQ---QEEYRQQLKAREDQVEDAE-ARLRNVEWLLQE----KVEELRKQFEKNTRSDLLLKELYVENAHLMKA 1041
Cdd:PTZ00121 1560 AEEKKKAEEakkAEEDKNMALRKAEEAKKAEeARIEEVMKLYEEekkmKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLK 1639
|
330 340
....*....|....*....|....
gi 1720401257 1042 VQLTEEKQRGAEKKNCVLEEKVRA 1065
Cdd:PTZ00121 1640 KKEAEEKKKAEELKKAEEENKIKA 1663
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
72-377 |
2.08e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 72 RSCRGQVDQLVQERDKARQDLEKAEKRNLDFVREMDDCHSALEQLTEKKIKHLEQEYRG-----------RLSLLRSEVE 140
Cdd:TIGR02169 233 EALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvkekigeleaeIASLERSIAE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 141 MERELfwEQARRQRAVLEQDVGRLQAEETSLREKLTlalkensRLQKEIIEVVEKLSDSEKLVLRLQSDLQFVLKD--KL 218
Cdd:TIGR02169 313 KEREL--EDAEERLAKLEAEIDKLLAEIEELEREIE-------EERKRRDKLTEEYAELKEELEDLRAELEEVDKEfaET 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 219 EPQSMELLAQEEQFTAILNDYELKCRDLQDRNDELQAELEGLRLRLPRSRQspagtpgthrrripgrgpadnlfvgESTP 298
Cdd:TIGR02169 384 RDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEA-------------------------KINE 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 299 VSLETEIMVEQMKEHYQELrMQLETKVNYYEKEIEVMKRNFEKDKKEMEQAfQLEVSVLEGQK--ADLEALYAKSQEVIL 376
Cdd:TIGR02169 439 LEEEKEDKALEIKKQEWKL-EQLAADLSKYEQELYDLKEEYDRVEKELSKL-QRELAEAEAQAraSEERVRGGRAVEEVL 516
|
.
gi 1720401257 377 G 377
Cdd:TIGR02169 517 K 517
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
758-996 |
2.21e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 2.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 758 EDVVRALEKAD-------SRESYRAELQRLSEENLVLKsdlgkiQLELETSESKNEVQRQEIEVLKRDKEQACCDLEELS 830
Cdd:COG4913 242 EALEDAREQIEllepireLAERYAAARERLAELEYLRA------ALRLWFAQRRLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 831 TQTQkykdemsqlncrvlQLEGEPSGLHTQKEENHGAiqvlmkkleeagcREEQQGDQIQNLKIELERVNEECQYLRLSQ 910
Cdd:COG4913 316 ARLD--------------ALREELDELEAQIRGNGGD-------------RLEQLEREIERLERELEERERRRARLEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 911 AELTESLEESRSQLYSVQLRLEAAQSQHGRIVQRLQEQMSQLvpGARVAELQHLLNVKEEEARRLSAQQEEYRQQLKARE 990
Cdd:COG4913 369 AALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEA--EAALRDLRRELRELEAEIASLERRKSNIPARLLALR 446
|
....*.
gi 1720401257 991 DQVEDA 996
Cdd:COG4913 447 DALAEA 452
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
771-1040 |
2.22e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.02 E-value: 2.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 771 ESYRAELQRLSEENLVLKSdlgkIQLELETSESKNEvqrqEIEVLKRDKEQACCDLEELSTQTQKYKDEMSQLNCRVLQL 850
Cdd:pfam05483 363 ELLRTEQQRLEKNEDQLKI----ITMELQKKSSELE----EMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEEL 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 851 EGEPSGLHTQKEENHGAIQVLMKKLEEAGCREEQQGDQIQNLKIELErvNEECQYLRLSQAELTESLEESRSQLYSVQLR 930
Cdd:pfam05483 435 KGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELE--KEKLKNIELTAHCDKLLLENKELTQEASDMT 512
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 931 LEAAQSQHGRIVQRLQEQ-MSQLVPGARVAELQhLLNVKEEEARRLSAQQEEYRQQLKAREDQVEDAEARLRNVE---WL 1006
Cdd:pfam05483 513 LELKKHQEDIINCKKQEErMLKQIENLEEKEMN-LRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEkqmKI 591
|
250 260 270
....*....|....*....|....*....|....
gi 1720401257 1007 LQEKVEELRKQFEKNTRSdllLKELYVENAHLMK 1040
Cdd:pfam05483 592 LENKCNNLKKQIENKNKN---IEELHQENKALKK 622
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
106-573 |
2.33e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.03 E-value: 2.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 106 MDDCHSALEQLTEKKIKHLEQEYRGRLSLLRSEVEME---------------------RELFWEQARRQRAVLEQDVGRL 164
Cdd:pfam15921 243 VEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEitgltekassarsqansiqsqLEIIQEQARNQNSMYMRQLSDL 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 165 QAEETSLREKltlaLKENSRLQKEIIEVVEK---LSDSEKLVLRLQSD------------LQFVLKDkLEPQSMELLAQE 229
Cdd:pfam15921 323 ESTVSQLRSE----LREAKRMYEDKIEELEKqlvLANSELTEARTERDqfsqesgnlddqLQKLLAD-LHKREKELSLEK 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 230 EQFTAILN-------DYELKCRDLQDRNDELQaELEGLRLRLPRSRQspagtpGTHRRRIPG-RGPADNLFVGESTPVSL 301
Cdd:pfam15921 398 EQNKRLWDrdtgnsiTIDHLRRELDDRNMEVQ-RLEALLKAMKSECQ------GQMERQMAAiQGKNESLEKVSSLTAQL 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 302 E-TEIMVEQMKEHYQELRMQLEtkvnyyekeievmkrNFEKDKKEMEQAFQLEVSVLEGQKADLEALYAKsqeVILGLKE 380
Cdd:pfam15921 471 EsTKEMLRKVVEELTAKKMTLE---------------SSERTVSDLTASLQEKERAIEATNAEITKLRSR---VDLKLQE 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 381 qLQDAAQSPEPAPAGLAHCCAqalctlaqrleVEMHLRHQDQLLQIRQEAEEELNQklswLEAQHAACCESLslqhQCEK 460
Cdd:pfam15921 533 -LQHLKNEGDHLRNVQTECEA-----------LKLQMAEKDKVIEILRQQIENMTQ----LVGQHGRTAGAM----QVEK 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 461 DQLLQTHLQRVKDLaAQLDLEKGRREEREQEVLAhcRRQQLKLQAV----MSEEQARICRSFTLEKEKL---EQTYREQV 533
Cdd:pfam15921 593 AQLEKEINDRRLEL-QEFKILKDKKDAKIRELEA--RVSDLELEKVklvnAGSERLRAVKDIKQERDQLlneVKTSRNEL 669
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 1720401257 534 EGLVQEADVLRALLKNGttvvSDQQERTPSSMSLGPDSRQ 573
Cdd:pfam15921 670 NSLSEDYEVLKRNFRNK----SEEMETTTNKLKMQLKSAQ 705
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
744-1072 |
3.07e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.59 E-value: 3.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 744 ESEMKDVKIKLLQLEDVVRALEKADS-----------RESYRAELQRLSEENLVLKSDLGKIQLELETSESKNEvqrqEI 812
Cdd:PRK03918 265 EERIEELKKEIEELEEKVKELKELKEkaeeyiklsefYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEE----RL 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 813 EVLKRDKEQACCDLEELSTQTQKYKdemsqlncRVLQLEGEPSGLHTQKEENhgAIQVLMKKLEEAGCREEQQGDQIQNL 892
Cdd:PRK03918 341 EELKKKLKELEKRLEELEERHELYE--------EAKAKKEELERLKKRLTGL--TPEKLEKELEELEKAKEEIEEEISKI 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 893 KIELERVNEEcqylrlsQAELTESLEESRSQLYSVQL-RLEAAQSQHGRIVQRLQEQMSQLvpGARVAELQHLLNVKEEE 971
Cdd:PRK03918 411 TARIGELKKE-------IKELKKAIEELKKAKGKCPVcGRELTEEHRKELLEEYTAELKRI--EKELKEIEEKERKLRKE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 972 ARRLSAQQEEYRQQLKARE--DQVEDAEARLRNVEwllQEKVEELRKQFEK-NTRSDLLLKELYVENAHLMKAVQLtEEK 1048
Cdd:PRK03918 482 LRELEKVLKKESELIKLKElaEQLKELEEKLKKYN---LEELEKKAEEYEKlKEKLIKLKGEIKSLKKELEKLEEL-KKK 557
|
330 340
....*....|....*....|....
gi 1720401257 1049 QRGAEKKNCVLEEKVRALNKLISK 1072
Cdd:PRK03918 558 LAELEKKLDELEEELAELLKELEE 581
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
765-1077 |
3.31e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 3.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 765 EKADSRESYRAELQRLSEENLVLKSDLGKIQLELETSESKNEVQRQEIEVLkrDKEQACCDLEELSTQT-----QKYKDE 839
Cdd:COG3096 372 EAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQAVQAL--EKARALCGLPDLTPENaedylAAFRAK 449
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 840 MSQLNCRVLQLEGEPSGLHTQKEENHGAIQVLMKKL-----EEAGCREEQQGDQIQNLKIELERVneecQYLRLSQAELT 914
Cdd:COG3096 450 EQQATEEVLELEQKLSVADAARRQFEKAYELVCKIAgeverSQAWQTARELLRRYRSQQALAQRL----QQLRAQLAELE 525
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 915 ESLEesrsQLYSVQLRLEAAQSQHGRIVQRLQEQMSQLvpgarvAELQHLLNVKEEEARRLSAQQEEYRQQLKAREDQVE 994
Cdd:COG3096 526 QRLR----QQQNAERLLEEFCQRIGQQLDAAEELEELL------AELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIK 595
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 995 daEARLRNVEWL-LQEKVEELRKQfekntrsdllLKELYVENAHLMKAVQLTEEKQRGAEKKNCVLEEKVRALNKLISKM 1073
Cdd:COG3096 596 --ELAARAPAWLaAQDALERLREQ----------SGEALADSQEVTAAMQQLLEREREATVERDELAARKQALESQIERL 663
|
....
gi 1720401257 1074 APAS 1077
Cdd:COG3096 664 SQPG 667
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
868-1077 |
3.39e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 3.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 868 IQVLMKKLEEAGCREEQQGDQIQNLKIELERVNEECQYLRLSQAELTESLEESRSQLYSVQLRLEAAQSQHGRIVQRLQE 947
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 948 QMSQLVPGARVAELQ---------HLLNVKEEEARRLSAQQEEYRQQLKAREDQVEDAEARLRNVEWLLQEKVEELRKQF 1018
Cdd:COG3883 98 SGGSVSYLDVLLGSEsfsdfldrlSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQ 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1720401257 1019 EKNTRsdlLLKELYVENAHLMKAVQLTEEKQRGAEKKNCVLEEKVRALNKLISKMAPAS 1077
Cdd:COG3883 178 AEQEA---LLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAA 233
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
765-1031 |
3.46e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.59 E-value: 3.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 765 EKADSRESYRAELQRLSEENLVLKSDLGKIQLELETSESKNEVQRqEIEVLKRDKEQaccdLEELSTQTQKY-------- 836
Cdd:PRK03918 449 HRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKES-ELIKLKELAEQ----LKELEEKLKKYnleelekk 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 837 KDEMSQLNCRVLQLEGEPSGLHT---QKEENHGAIQVLMKKLEEAGCREEQQGDQIQNLKIE-LERVNEECQ-------- 904
Cdd:PRK03918 524 AEEYEKLKEKLIKLKGEIKSLKKeleKLEELKKKLAELEKKLDELEEELAELLKELEELGFEsVEELEERLKelepfyne 603
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 905 YLRLSQAEltESLEESRSQLYSVQLRLEAAQSQHGRIVQRLQEQMSQLvpgarvAELQHLLNvkEEEARRLSAQQEEYRQ 984
Cdd:PRK03918 604 YLELKDAE--KELEREEKELKKLEEELDKAFEELAETEKRLEELRKEL------EELEKKYS--EEEYEELREEYLELSR 673
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1720401257 985 QLKAREDQVEDAEARLRNVEWLLQEKVEELRKQFEKNTRSDLLLKEL 1031
Cdd:PRK03918 674 ELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKAL 720
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
756-1018 |
3.67e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.64 E-value: 3.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 756 QLEDVVRALEkaDSRESYRAELQRLSEENLVLKSDLGKIQLEletSESKNEVQRQEIEVLKRDKEQACCDLEELSTQTQK 835
Cdd:pfam15921 86 QVKDLQRRLN--ESNELHEKQKFYLRQSVIDLQTKLQEMQME---RDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCL 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 836 YKDEMSQLNCRVLQLEGepsgLHTQKEENHGAIQVLMKKLEEAGCREEQQGDQIQNLKIE---------LERVNEECQYL 906
Cdd:pfam15921 161 KEDMLEDSNTQIEQLRK----MMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRslgsaiskiLRELDTEISYL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 907 RLSQAELTESLEESRSQ--------LYSVQLRLEAAQSQHGRIVQRLQEQMSQLVPGARvaELQHLLNVKEEEARRlsaQ 978
Cdd:pfam15921 237 KGRIFPVEDQLEALKSEsqnkiellLQQHQDRIEQLISEHEVEITGLTEKASSARSQAN--SIQSQLEIIQEQARN---Q 311
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1720401257 979 QEEYRQQLKAREDQVEDAEARLRNVEWLLQEKVEELRKQF 1018
Cdd:pfam15921 312 NSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQL 351
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
832-1055 |
4.42e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 4.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 832 QTQKYKDEMSQLNcrvlQLEGEPSGLHTQKEENHGAIQVLMKKLEEAGCREEQQGDQIQNLKIELERVNEECQYLRLSQA 911
Cdd:COG4942 18 QADAAAEAEAELE----QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 912 ELTESLEEsRSQLYSVQLRLEAAQSQHGRI-----------VQRLQEQMSQLVPgARVAELQHLLNVKEEeARRLSAQQE 980
Cdd:COG4942 94 ELRAELEA-QKEELAELLRALYRLGRQPPLalllspedfldAVRRLQYLKYLAP-ARREQAEELRADLAE-LAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720401257 981 EYRQQLKAREDQVEDAEARLRNVEWLLQEKVEELRKQFEKNTRSdllLKELYVENAHLMKAVQLTEEKQRGAEKK 1055
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAE---LAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
728-1019 |
4.77e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.18 E-value: 4.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 728 SELPNPQEATVMPAMSESEMKDVKIKLLQLEDVVRALEKADSRESYRAELQRLSEENLVLKSDLGKIQLELETSESKNEV 807
Cdd:PRK02224 302 AGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVED 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 808 QRQEIEVLKRDKEQ-------ACCDLEELSTQTQKYKDEMSQLNCRVLQLEGEPSGLHTQKEENhgaiqvlmKKLEEAG- 879
Cdd:PRK02224 382 RREEIEELEEEIEElrerfgdAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEA--------EALLEAGk 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 880 --------------CREEQQGDQIQNLKIELERVNEECQYL--RLSQAeltESLEESRSQLYSVQLRLEAAQ---SQHGR 940
Cdd:PRK02224 454 cpecgqpvegsphvETIEEDRERVEELEAELEDLEEEVEEVeeRLERA---EDLVEAEDRIERLEERREDLEeliAERRE 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 941 IVQRLQEQMSQLvpGARVAELQHLLNVKEEEARRLSAQQEEYRQQLKAREDQVEDAEARLRNVEWL--LQEKVEELRKQF 1018
Cdd:PRK02224 531 TIEEKRERAEEL--RERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIrtLLAAIADAEDEI 608
|
.
gi 1720401257 1019 E 1019
Cdd:PRK02224 609 E 609
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
808-1022 |
4.97e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 4.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 808 QRQEIEVLKRDKEQAccDLEELSTQTQKYKDEMSQLNCRVLQLEGEPSGLHTQKEENHGAIQVLMKKLEEAGcreeqqGD 887
Cdd:COG4913 267 ARERLAELEYLRAAL--RLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNG------GD 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 888 QIQNLKIELERVNEECQYLRLSQAELTESLEesrsqlysvQLRLEAAQSQHGriVQRLQEQMSQLVpgARVAELQHLLnv 967
Cdd:COG4913 339 RLEQLEREIERLERELEERERRRARLEALLA---------ALGLPLPASAEE--FAALRAEAAALL--EALEEELEAL-- 403
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1720401257 968 kEEEARRLSAQqeeyRQQLKAREDQVEDAEARLRNVEWLLQEKVEELRKQFEKNT 1022
Cdd:COG4913 404 -EEALAEAEAA----LRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEAL 453
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
756-1065 |
5.18e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 5.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 756 QLEDVVRALE-KADSRESYRAELQRLSEEnLVLKSDLGKIQLELETSESKNEVQRQEIEVLKRDKEQACcdlEELSTQTQ 834
Cdd:PTZ00121 1225 KAEAVKKAEEaKKDAEEAKKAEEERNNEE-IRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKA---DEAKKAEE 1300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 835 KYKDEMSQLNCRVLQLEGEpsgLHTQKEENHGAIQVLMKKLEEAGCREEQQGDQIQNLKIELERVNEECQYLRLSQAELT 914
Cdd:PTZ00121 1301 KKKADEAKKKAEEAKKADE---AKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 915 ESLEESRSQLYSVQLRLEAAQSqhgriVQRLQEQMSQLVPGARVAELQHLLNVKEEEARR---LSAQQEEYRQ--QLKAR 989
Cdd:PTZ00121 1378 KKADAAKKKAEEKKKADEAKKK-----AEEDKKKADELKKAAAAKKKADEAKKKAEEKKKadeAKKKAEEAKKadEAKKK 1452
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720401257 990 EDQVEDAEARLRNVEwlLQEKVEELRKQFEKNTRSDLLLKELYVENAHLMKAVQLTEEKQRGAEKKNCvlEEKVRA 1065
Cdd:PTZ00121 1453 AEEAKKAEEAKKKAE--EAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA--EEAKKA 1524
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
873-1066 |
5.34e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.88 E-value: 5.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 873 KKLEEAGCREEQQGDQIQNLKIELERV--NEECQYLRLSQAELTESLEESRSQLYSVQL----RLEAAQSQHgrivQRLQ 946
Cdd:pfam17380 316 RKLEEAEKARQAEMDRQAAIYAEQERMamERERELERIRQEERKRELERIRQEEIAMEIsrmrELERLQMER----QQKN 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 947 EQMSQLVPGARVAEL-----QHLLNVKEEEARRLSAQQEEYRQ-QLKAREDQVEDAEARLRNVEWLLQEKVEELRKQFEK 1020
Cdd:pfam17380 392 ERVRQELEAARKVKIleeerQRKIQQQKVEMEQIRAEQEEARQrEVRRLEEERAREMERVRLEEQERQQQVERLRQQEEE 471
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1720401257 1021 NTRSDLLLKELYVENAHLMKAVQLTEEKQRGAEKKNCVLEEKVRAL 1066
Cdd:pfam17380 472 RKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKL 517
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
857-1020 |
7.14e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.39 E-value: 7.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 857 LHTQKEENHGAIQVLMKKLEEAGCREEQQGDQIQNLKIE--LERVNEECQYLRLSQAELTESLEESRSQLYSVQLRLEAA 934
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKngLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAAL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 935 QSQHGR------------IVQRLQEQMSQLVpgARVAELQHLLNVKEEEARRLSAQQEEYRQQLKAREDQV----EDAEA 998
Cdd:COG3206 246 RAQLGSgpdalpellqspVIQQLRAQLAELE--AELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRIlaslEAELE 323
|
170 180
....*....|....*....|..
gi 1720401257 999 RLRNVEWLLQEKVEELRKQFEK 1020
Cdd:COG3206 324 ALQAREASLQAQLAQLEARLAE 345
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
119-447 |
8.64e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 40.31 E-value: 8.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 119 KKIKHLEQEYRGRLSLLRsevemerelfWEQARRQRAVLEQDVGRLQAEETSLREKLTLALKENSRLQKEIIEVVEKLSD 198
Cdd:COG1196 216 RELKEELKELEAELLLLK----------LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 199 SEKLVLRLQSDLQfvlkdKLEPQSMELLAQEEQFTAILNDYELKCRDLQDRNDELQAELEGLRLRLprsrqspagtpgth 278
Cdd:COG1196 286 AQAEEYELLAELA-----RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEEL-------------- 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 279 rrripgrgpadnlfvgestpvsLETEIMVEQMKEHYQELRMQLETKVNYYEKEIEVMKRNFEKDKKEMEQA--FQLEVSV 356
Cdd:COG1196 347 ----------------------EEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAaeLAAQLEE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 357 LEGQKADLEALYAKSQEVILGLKEQLQDAAQSPEPAPAGLahccAQALCTLAQRLEVEMHLRHQDQLLQIRQEAEEELNQ 436
Cdd:COG1196 405 LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL----EEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
330
....*....|.
gi 1720401257 437 KLSWLEAQHAA 447
Cdd:COG1196 481 ELLEELAEAAA 491
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
734-1054 |
8.98e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.42 E-value: 8.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 734 QEATVMPAMSESEMKDVKIKLLQLEDVVRALEKADS-RESYRAELQRLSEENLVLKSDLGKI----------QLELETSE 802
Cdd:TIGR00606 158 QEDSNWPLSEGKALKQKFDEIFSATRYIKALETLRQvRQTQGQKVQEHQMELKYLKQYKEKAceirdqitskEAQLESSR 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 803 SKNEVQRQEIEVLKRDKEQaccdLEELSTQTQKYKDEMSQLNCRVLQLEGEPSGLHTQKEENHGAIQVLMKKLEEAGCRE 882
Cdd:TIGR00606 238 EIVKSYENELDPLKNRLKE----IEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRT 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 883 -EQQGDQIQNLKIELERVNEECQYLRLSQAELTesLEESRSQL----------------YSVQLRLEAAQSQHGRIVQRL 945
Cdd:TIGR00606 314 vREKERELVDCQRELEKLNKERRLLNQEKTELL--VEQGRLQLqadrhqehirardsliQSLATRLELDGFERGPFSERQ 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401257 946 QEQMSQLV----------PGARVAELQHLLNVKEEEARRLSAQQEEYRQQLKAREDQVEDAEARLRNVEWLLQ------- 1008
Cdd:TIGR00606 392 IKNFHTLVierqedeaktAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQqlegssd 471
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1720401257 1009 ---EKVEELRK------QFEKNTRSDLLLKE-LYVENAHLMKAVQLTEEKQRGAEK 1054
Cdd:TIGR00606 472 rilELDQELRKaerelsKAEKNSLTETLKKEvKSLQNEKADLDRKLRKLDQEMEQL 527
|
|
| |
