|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
660-970 |
5.33e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 80.10 E-value: 5.33e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 660 EKADSRESYRAELQRLSEENLVLKSDLGKIQLELETSESKNEVQRQEIEVLKRDKEQ-------ACCDLEELSTQTQKYK 732
Cdd:TIGR02168 667 KTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEElsrqisaLRKDLARLEAEVEQLE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 733 DEMSQLNCRVLQLEGEPSGLHTQKEENHGAIQVLMKKLEEAGCREEQQGDQIQNLKIELERVNEECQYLRLSQAELTESL 812
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 813 EESRSQLYSVQLRLEAAQSQHGrivqRLQEQMSQLVpgARVAELQHLLNVKEEEARRLSAQQEEYRQQLKAREDQVEDAE 892
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIE----ELSEDIESLA--AEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 893 ARLRNVEWLLQEKVEELRKQFEKNTRSDLLLKELYVENAHLMKAV--------QLTEEKQRGAEKKNCVLEEKVRALNKL 964
Cdd:TIGR02168 901 EELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLseeysltlEEAEALENKIEDDEEEARRRLKRLENK 980
|
....*.
gi 1720401262 965 ISKMAP 970
Cdd:TIGR02168 981 IKELGP 986
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
638-947 |
1.73e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.88 E-value: 1.73e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 638 SESEMKDVKIKLLQLEDVVRALEKADSR--------ESYRAELQRLSEENLVLKSDLGKIQLELETSESKNEVQRQEIEV 709
Cdd:COG1196 220 EELKELEAELLLLKLRELEAELEELEAEleeleaelEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 710 LKRDKEQACCDLEELSTQTQKYKDEMSQLNCRVLQLEgepsglhTQKEENHGAIQVLMKKLEEAGCREEQQGDQIQNLKI 789
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELE-------EELEELEEELEEAEEELEEAEAELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 790 ELERVNEEcqylrlsQAELTESLEESRSQLYSVQLRLEAAQSQHGRIVQRLQEQMSQLvpGARVAELQHLLNVKEEEARR 869
Cdd:COG1196 373 ELAEAEEE-------LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEEL--EELEEALAELEEEEEEEEEA 443
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720401262 870 LSAQQEEyRQQLKAREDQVEDAEARLRNVEWLLQEKVEELRKQFEKNTRSDLLLKELYVENAHLMKAVQLTEEKQRGA 947
Cdd:COG1196 444 LEEAAEE-EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR 520
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
641-918 |
5.51e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 5.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 641 EMKDVKIKLLQLEDVVRALEkaDSRESYRAELQRLSEENLVLKSDLGKIQLELETSESKNEVQRQEIEVLKRDKEQACCD 720
Cdd:TIGR02168 233 RLEELREELEELQEELKEAE--EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 721 LEELSTQTQKYKDEMSQLNCRVLQLEGEpsgLHTQKEEnhgaIQVLMKKLEEAGCREEQQGDQIQNLKIELERVNEECQY 800
Cdd:TIGR02168 311 LANLERQLEELEAQLEELESKLDELAEE---LAELEEK----LEELKEELESLEAELEELEAELEELESRLEELEEQLET 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 801 LRLSQAELTESLEESRSQLYSVQLRLEAAQSQHGRIVQRLQEQMSQLVPgARVAELQHLLNVKEEEARRLSAQQEEYRQQ 880
Cdd:TIGR02168 384 LRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE-AELKELQAELEELEEELEELQEELERLEEA 462
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1720401262 881 LKAREDQVEDAEARLRNVEWLLQEK------VEELRKQFEKNTR 918
Cdd:TIGR02168 463 LEELREELEEAEQALDAAERELAQLqarldsLERLQENLEGFSE 506
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
768-949 |
2.64e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 2.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 768 KKLEEAGCREEQQGDQIQNLKIELERVNEECQYLRLSQAELTESLEESRSQLYSVQLRLEAAQSQHGRIVQRLQEQMSQL 847
Cdd:COG1196 225 LEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDI 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 848 VPGA-RVAELQHLLNVKEEEARRLSAQQEEYRQQLKAREDQVEDAEARLRNVEWLLQEKVEELRKQFEKNTRSDLLLKEL 926
Cdd:COG1196 305 ARLEeRRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEEL 384
|
170 180
....*....|....*....|...
gi 1720401262 927 YVENAHLMKAVQLTEEKQRGAEK 949
Cdd:COG1196 385 AEELLEALRAAAELAAQLEELEE 407
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
119-913 |
6.18e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 6.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 119 ELLAQEEQFTAILNDYELKCRDLQDRNDELQAELEGLRLRLPRSRQSPAGTPGThrrripgrgpadnLFvgestpvSLET 198
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKE-------------LY-------ALAN 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 199 EIM-VEQMKEHYQELRMQLETKVNYYEKEIEVMKRNFEKDKKEMEQAfQLEVSVLEGQKADLEALYAKSQEVILGLKEQL 277
Cdd:TIGR02168 296 EISrLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAEL-EEKLEELKEELESLEAELEELEAELEELESRL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 278 QDAAQSPEPAPAGLAHCCAQALCTLAQRLEVEMHLRHQDQLLQIRQEAEEELNQKLSwlEAQHAACCESLSlqhqcEKDQ 357
Cdd:TIGR02168 375 EELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE--EAELKELQAELE-----ELEE 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 358 LLQTHLQRVKDLAAQLDLEKGRREEREQEVLAhcrrqqlkLQAVMSEEQARIcrsftlekeKLEQTYREQVEGLVQEAdv 437
Cdd:TIGR02168 448 ELEELQEELERLEEALEELREELEEAEQALDA--------AERELAQLQARL---------DSLERLQENLEGFSEGV-- 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 438 lRALLKNGTT------VVSDQQERTPS-----SMSLGPD-----SRQQPTARQAVS---------------PDGRTGAPA 486
Cdd:TIGR02168 509 -KALLKNQSGlsgilgVLSELISVDEGyeaaiEAALGGRlqavvVENLNAAKKAIAflkqnelgrvtflplDSIKGTEIQ 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 487 EWPGPEKAEGRDFPGQLCSIDAMPSPTPTLLSRRSSeNLGVRDNHQrplNAEEGAIPKEPEPSARTLTGQGQKLPLPVHP 566
Cdd:TIGR02168 588 GNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLG-GVLVVDDLD---NALELAKKLRPGYRIVTLDGDLVRPGGVITG 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 567 QMLEPSLGTTALDRKAASVGVQGQASEGPVGDGEGVQEAWLQFRGEATRMRpslpcselpnpQEATVMPAMSESEMKDVK 646
Cdd:TIGR02168 664 GSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEEL-----------EQLRKELEELSRQISALR 732
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 647 IKLLQLEDVVRALEKADSRESyrAELQRLSEENLVLKSDLGKIQLELETSESKNEVQRQEIEVLKRDKEQACCDLEELST 726
Cdd:TIGR02168 733 KDLARLEAEVEQLEERIAQLS--KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRA 810
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 727 QTQKYKDEMSQLNCRVLQLEGEPSG-------LHTQKEENHGAIQVLMKKLEEAGCREEQQGDQIQNLKIELERVNEECQ 799
Cdd:TIGR02168 811 ELTLLNEEAANLRERLESLERRIAAterrledLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA 890
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 800 YLRLSQAELTES--------------LEESRSQLYSVQLRLEAAQSQHGRIVQRLQE--QMSQLVPGARVAELQHLLNVK 863
Cdd:TIGR02168 891 LLRSELEELSEElreleskrselrreLEELREKLAQLELRLEGLEVRIDNLQERLSEeySLTLEEAEALENKIEDDEEEA 970
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720401262 864 EEEARRLSAQ-----------QEEYrQQLKARED----QVEDAEARLRNVEWLLQEKVEELRKQF 913
Cdd:TIGR02168 971 RRRLKRLENKikelgpvnlaaIEEY-EELKERYDfltaQKEDLTEAKETLEEAIEEIDREARERF 1034
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
638-974 |
6.73e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 6.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 638 SESEMKDVKIKLLQLEDVVRAL-----------EKADSRESYRAELQRLseenlvlksDLGKIQLELETSESKNEVQRQE 706
Cdd:COG1196 177 AERKLEATEENLERLEDILGELerqleplerqaEKAERYRELKEELKEL---------EAELLLLKLRELEAELEELEAE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 707 IEVLKRDKEQACCDLEELSTQTQKYKDEMSQLNCRVLQLEGEPSGLHTQKEENHGAIQVLMKKLEEAgcreeqqgdqiQN 786
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL-----------EE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 787 LKIELERVNEEcqyLRLSQAELTESLEESRSQLYSVQLRLEAAQSQHGRIVQRLQEQMSQLvpgarvAELQHLLNVKEEE 866
Cdd:COG1196 317 RLEELEEELAE---LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL------AEAEEELEELAEE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 867 ARRLSAQQEEYRQQLKAREDQVEDAEARLRNVEWLLQEKVEELRKQFEKNTRSDLLLKELYVENAHLMKAVQLTEEKQRG 946
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
330 340
....*....|....*....|....*...
gi 1720401262 947 AEKKNCVLEEKVRALNKLISKMAPASLS 974
Cdd:COG1196 468 LLEEAALLEAALAELLEELAEAAARLLL 495
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
666-972 |
7.58e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.60 E-value: 7.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 666 ESYRAELQRLSEENLVLKSDLGKIQLELETSES----KNEVQRQEIEVLKRDKEQACCDLEELSTQTQKYKDEMSQLNCR 741
Cdd:TIGR02168 182 ERTRENLDRLEDILNELERQLKSLERQAEKAERykelKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 742 VLQLEGEPSGLHTQKEENHGAIQVLMKKLEEAGC-------REEQQGDQIQNLKIELERVNEECQYLRLSQAELTESLEE 814
Cdd:TIGR02168 262 LQELEEKLEELRLEVSELEEEIEELQKELYALANeisrleqQKQILRERLANLERQLEELEAQLEELESKLDELAEELAE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 815 SRSQLYSVQLRLEAAQSQHGRIVQRLQEQMSqlvpgaRVAELQHLLNVKEEEARRLSAQQEEYRQQLKAREDQVEDAEAR 894
Cdd:TIGR02168 342 LEEKLEELKEELESLEAELEELEAELEELES------RLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDR 415
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720401262 895 LRNvewlLQEKVEELRKQFEKNTRSDLLLkELYVENAHLMKAVQLTEEKQRGAEKKNCVLEEKVRALNKLISKMAPAS 972
Cdd:TIGR02168 416 RER----LQQEIEELLKKLEEAELKELQA-ELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQ 488
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
639-967 |
2.56e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 54.64 E-value: 2.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 639 ESEMKDVKIKLLQLEDVVRALEKADSR-ESYRAELQRLSEENLVLKSDLGKIQLELETSESKNEVQRQEIEVLKRDKEQA 717
Cdd:TIGR04523 186 QKNIDKIKNKLLKLELLLSNLKKKIQKnKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKI 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 718 CCDLEELSTQTQKYKDEMSQLNCRVLQLEGEPSGLHTQKEEN-----HGAIQVLMKKLEEAGCREEQQGDQIQNLKIELE 792
Cdd:TIGR04523 266 KKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDwnkelKSELKNQEKKLEEIQNQISQNNKIISQLNEQIS 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 793 RVNEECQYLRLSQAELTESLEESRSQLYSVQ-------LRLEAAQSQHGRIVQRL--QEQMSQLVPGaRVAELQHLLNVK 863
Cdd:TIGR04523 346 QLKKELTNSESENSEKQRELEEKQNEIEKLKkenqsykQEIKNLESQINDLESKIqnQEKLNQQKDE-QIKKLQQEKELL 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 864 EEEARRLSAQQEEYRQQLKAREDQVEDAEARLRNVEWL---LQEKVEELRKQFEKN-TRSDLLLKELYVENAHLMK---A 936
Cdd:TIGR04523 425 EKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTresLETQLKVLSRSINKIkQNLEQKQKELKSKEKELKKlneE 504
|
330 340 350
....*....|....*....|....*....|.
gi 1720401262 937 VQLTEEKQRGAEKKNCVLEEKVRALNKLISK 967
Cdd:TIGR04523 505 KKELEEKVKDLTKKISSLKEKIEKLESEKKE 535
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
644-968 |
6.69e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 6.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 644 DVKIK--LLQLEDVVRALEKADSRES-YRAELQRLSEEN------LVLKSDLGKIQL-----ELETSESKNEVQRQEIEV 709
Cdd:TIGR02169 169 DRKKEkaLEELEEVEENIERLDLIIDeKRQQLERLRRERekaeryQALLKEKREYEGyellkEKEALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 710 LKRDKEQACCDLEELSTQTQKYKDEMSQLNCRVLQL-EGEPSGLHTQKEENHGAIQVLMKKLEEAGCREEQQGDQIQNLK 788
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 789 IELERVNEEcqylrlsQAELTESLEESRSQLYSVQLRLEAAQSQHGRIVQRLQE----------QMSQLVP-----GARV 853
Cdd:TIGR02169 329 AEIDKLLAE-------IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEvdkefaetrdELKDYREkleklKREI 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 854 AELQHLLNVKEEEARRLSAQQEEYRQQLKAREDQV-------EDAEARLRNVEWLLQEKVEELRKQFEK--NTRSDL--- 921
Cdd:TIGR02169 402 NELKRELDRLQEELQRLSEELADLNAAIAGIEAKIneleeekEDKALEIKKQEWKLEQLAADLSKYEQElyDLKEEYdrv 481
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1720401262 922 --LLKELYVENAHLMKAVQLTEEKQRGAEKKNCVLEEKVRALNKLISKM 968
Cdd:TIGR02169 482 ekELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQL 530
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
657-925 |
1.62e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 1.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 657 RALEKADSRESYRAELQRLSEENLVLKSDLGKIQLELETSESKNEVQRQEIEVLKRDKEQACCDLEELSTQTQKYKDEMS 736
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 737 QLNCRVLQLEGEPSglhtQKEENHGAIQVLMKKLEeagcrEEQQGDQIQNLKIELERVNEEcqylrlsQAELTESLEESR 816
Cdd:TIGR02169 755 NVKSELKELEARIE----ELEEDLHKLEEALNDLE-----ARLSHSRIPEIQAELSKLEEE-------VSRIEARLREIE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 817 SQLYSVQLRLEAAQSQHGRIVQRLQEQMSQLVP-GARVAELQHLLNVKEEEARRLSAQQEEYRQQLKAREDQVEDAEARL 895
Cdd:TIGR02169 819 QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSiEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQL 898
|
250 260 270
....*....|....*....|....*....|
gi 1720401262 896 RNvewlLQEKVEELRKQFEKNTRSDLLLKE 925
Cdd:TIGR02169 899 RE----LERKIEELEAQIEKKRKRLSELKA 924
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
657-911 |
1.92e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 1.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 657 RALEKADSRESYRAELQRLSEENLVLKSDLGKIQLELETSESKNEVQRQEIEVLKRDKEQACCDLEELSTQTQKYKDEMS 736
Cdd:TIGR02169 703 RLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALN 782
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 737 QLNCR-----VLQLEGEPSGLHTQKEENHGAIQVLMKKLEEAGCREEQQGDQIQNLKIELERVNEECQYLRLSQAELTES 811
Cdd:TIGR02169 783 DLEARlshsrIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGK 862
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 812 LEESRSQLYSVQLRLEAAQSQHGRI---VQRLQEQMSQLVPGARVAELQhlLNVKEEEARRLSAQQEEYRQQLKAREDQV 888
Cdd:TIGR02169 863 KEELEEELEELEAALRDLESRLGDLkkeRDELEAQLRELERKIEELEAQ--IEKKRKRLSELKAKLEALEEELSEIEDPK 940
|
250 260
....*....|....*....|....*....
gi 1720401262 889 ED------AEARLRNVEWLLQEKVEELRK 911
Cdd:TIGR02169 941 GEdeeipeEELSLEDVQAELQRVEEEIRA 969
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
755-969 |
2.91e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 2.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 755 QKEENHGAIQVLMKKLEEAGCREEQQGDQIQNLKIELERVNEECQYLRLSQAELTESLEESRSQLYSVQLRLEAAQSQHG 834
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 835 RIVQRLQEQMSQLVPGARVAELQHLLNVKE-EEARRLSAQQEEYRQQLKAREDQVEDAEARLRNVEWLLQEKVEELRKQF 913
Cdd:COG4942 101 AQKEELAELLRALYRLGRQPPLALLLSPEDfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALL 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1720401262 914 EKNTRSDLLLKELYVENAHLMKAVQLTEEKQRGAEKKncvLEEKVRALNKLISKMA 969
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAE---LQQEAEELEALIARLE 233
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
639-882 |
1.14e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 1.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 639 ESEMKDVKIKLLQLEDVVRALEKA-----------------DSRESYRAELQRLSEENLVLKSDLGKIQLELETSESKNE 701
Cdd:TIGR02169 757 KSELKELEARIEELEEDLHKLEEAlndlearlshsripeiqAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ 836
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 702 VQRQEIEVLKRDKEQACCDLEELSTQTQKYKDEMSQLNCRVLQLEGEPSGLHTQKEENHGAIQVLMKKLEEAGCREEQQG 781
Cdd:TIGR02169 837 ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKR 916
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 782 DQIQNLKIELERVNEECQYLRLSQAELTESLEESRS--QLYSVQLRLEAAQSQHGRIVQRLQEQMSQLVpgARVAELQHL 859
Cdd:TIGR02169 917 KRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSleDVQAELQRVEEEIRALEPVNMLAIQEYEEVL--KRLDELKEK 994
|
250 260
....*....|....*....|...
gi 1720401262 860 LNVKEEEARRLSAQQEEYRQQLK 882
Cdd:TIGR02169 995 RAKLEEERKAILERIEEYEKKKR 1017
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
636-959 |
3.98e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 3.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 636 AMSESEMKDVKIKLLQLEDVVRALEKADSRESYRAELQRLSEEnlVLKSDLGKIQLELETSESKNEVQRQEIEvlKRDKE 715
Cdd:PTZ00121 1502 AKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEE--KKKADELKKAEELKKAEEKKKAEEAKKA--EEDKN 1577
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 716 QACCDLEELSTQTQKYKDEMSQLNCRVLQLEGEPsgLHTQKEENHGAIQVlmKKLEEAGCREEQQGDQIQNLKIELERVN 795
Cdd:PTZ00121 1578 MALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE--AKKAEEAKIKAEEL--KKAEEEKKKVEQLKKKEAEEKKKAEELK 1653
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 796 EECQYLRLSQAELTESLEESRsqlysvqlrleaaqsqhgrivqRLQEQMSQLVPGARVAELQhlLNVKEEEARRLsaqqE 875
Cdd:PTZ00121 1654 KAEEENKIKAAEEAKKAEEDK----------------------KKAEEAKKAEEDEKKAAEA--LKKEAEEAKKA----E 1705
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 876 EYRqqlKAREDQVEDAEaRLRNVEWLLQEKVEELRKQFEKNTRSdllLKELYVENAHLMKAVQLTEEKQRGAE----KKN 951
Cdd:PTZ00121 1706 ELK---KKEAEEKKKAE-ELKKAEEENKIKAEEAKKEAEEDKKK---AEEAKKDEEEKKKIAHLKKEEEKKAEeirkEKE 1778
|
....*...
gi 1720401262 952 CVLEEKVR 959
Cdd:PTZ00121 1779 AVIEEELD 1786
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
658-908 |
4.13e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 4.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 658 ALEKADSRESYRAELQRLSEENLVLKSDLGKIQLELETSESKNEVQRQEIEVLKRdkeqaccdleelstQTQKYKDEMSQ 737
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALAR--------------RIRALEQELAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 738 LNCRVLQLEGEPSGLHTQKEENHGAIQVLMKKLEEAGCREEQQGDQIQNLKIELERVNEECQYLRLSQAELTESLEESRS 817
Cdd:COG4942 81 LEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 818 QLYSVQLRLEAAQSQHGRIVQRLQEQMsqlvpgarvAELQHLLNVKEEEARRLSAQQEEYRQQLKAREDQVEDAEARLRN 897
Cdd:COG4942 161 ELAALRAELEAERAELEALLAELEEER---------AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
250
....*....|.
gi 1720401262 898 VEWLLQEKVEE 908
Cdd:COG4942 232 LEAEAAAAAER 242
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
782-969 |
1.04e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 782 DQIQNLKIELERVNEECQYLRLSQAELTESLEESR--SQLYSVQLRLEAAQSQhgriVQRLQEQMSQLV-PGARVAELQH 858
Cdd:COG4913 617 AELAELEEELAEAEERLEALEAELDALQERREALQrlAEYSWDEIDVASAERE----IAELEAELERLDaSSDDLAALEE 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 859 LLNVKEEEARRLSAQQEEYRQQLKAREDQVEDAEARLRNVEWLLQEKVEelRKQFEKNTRSDLLLKELYVENAHLMKAVQ 938
Cdd:COG4913 693 QLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAED--LARLELRALLEERFAAALGDAVERELREN 770
|
170 180 190
....*....|....*....|....*....|.
gi 1720401262 939 LTEEKQRGAEKKNcvleekvRALNKLISKMA 969
Cdd:COG4913 771 LEERIDALRARLN-------RAEEELERAMR 794
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
652-904 |
1.31e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.80 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 652 LEDVVRALEKAdsRESYRAELQRLSEENLVLKSDLGKIQLELETSESKnevqRQEIEVLKRDKEQACCDLEELSTQTQKY 731
Cdd:PRK02224 204 LHERLNGLESE--LAELDEEIERYEEQREQARETRDEADEVLEEHEER----REELETLEAEIEDLRETIAETEREREEL 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 732 KDEMSQLNCRVLQLEGEPSGLHTQKEENHGAIQVLMKKLEEAGCREEQQGDQIQNLKIELERVNEECQYLRLSQAELTES 811
Cdd:PRK02224 278 AEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEER 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 812 LEESRSQLYSVQLRLEAAQSQHGRIVQRLQEQMSQLVPG-ARVAELQHLLNVKEEEARRLSAQQEEYRQQLKAREDQVED 890
Cdd:PRK02224 358 AEELREEAAELESELEEAREAVEDRREEIEELEEEIEELrERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRT 437
|
250
....*....|....
gi 1720401262 891 AEARLRNVEWLLQE 904
Cdd:PRK02224 438 ARERVEEAEALLEA 451
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
12-278 |
1.59e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 1.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 12 TEKKIKHLEQEYRGRLSLLRsevEMERELfwEQARRQRAVLEQDVGRLQAEETSLREKLTLALKENSRLQKEIIEVVEKL 91
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIA---ELEKAL--AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 92 SDSEKLVLRLQSDLQFVLKD--KLEPQSMELLAQEEQFTAILNDYELKCRDLQDRNDELQAELEGLRLRLPRSRQSPAGt 169
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERleEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES- 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 170 pgtHRRRIPGRGPADNLFVGESTPVSLETEIMVEQMkEHYQELRMQLETKVNYYEKEIEVMKRNFEKDKKEMEQAfQLEV 249
Cdd:TIGR02168 829 ---LERRIAATERRLEDLEEQIEELSEDIESLAAEI-EELEELIEELESELEALLNERASLEEALALLRSELEEL-SEEL 903
|
250 260
....*....|....*....|....*....
gi 1720401262 250 SVLEGQKADLEALYAKSQEVILGLKEQLQ 278
Cdd:TIGR02168 904 RELESKRSELRRELEELREKLAQLELRLE 932
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
704-914 |
2.45e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 2.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 704 RQEIEVLKRDKEQaccdLEELSTQTQKYKDEMSQLNcrVLQLEGEPSGLHTQKEenhgaiqvlmkkleeagcREEQQGDQ 783
Cdd:COG4913 241 HEALEDAREQIEL----LEPIRELAERYAAARERLA--ELEYLRAALRLWFAQR------------------RLELLEAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 784 IQNLKIELERVNEECQYLRLSQAELTESLEESRSQLYSV--------QLRLEAAQSQHGRIVQRLQEQMsqlvpgARVAE 855
Cdd:COG4913 297 LEELRAELARLEAELERLEARLDALREELDELEAQIRGNggdrleqlEREIERLERELEERERRRARLE------ALLAA 370
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1720401262 856 LQHLLNVKEEEARRLSAQQEEYRQQLKAREDQVEDAEARLRNVEWLLQEKVEELRKQFE 914
Cdd:COG4913 371 LGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIA 429
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
690-968 |
2.48e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.01 E-value: 2.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 690 QLELETSESKNEVQRQEIEVLKRDKEQACCDLEELSTQTQKYKDEMSQLNCRVLQLEGEPSGLHTQKEENHGAIQVLMKK 769
Cdd:TIGR04523 292 QLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 770 LEEAGCREEQQGDQIQNLKIELERVNEECQylrlSQAELTESLEEsrsQLYSVQLRLEAAQSQHGRIVQRLQEQMSQLvp 849
Cdd:TIGR04523 372 IEKLKKENQSYKQEIKNLESQINDLESKIQ----NQEKLNQQKDE---QIKKLQQEKELLEKEIERLKETIIKNNSEI-- 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 850 garvAELQHLLNVKEEEARRLSAQQEEYRQQLKAREDQVEDAEARLRNVEWLLQEKVEELRKQFEKNTRSDLLLKELYVE 929
Cdd:TIGR04523 443 ----KDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKK 518
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1720401262 930 NAHLMKAVQ-LTEEKQR---------------GAEKKNCVLEEKVRALNKLISKM 968
Cdd:TIGR04523 519 ISSLKEKIEkLESEKKEkeskisdledelnkdDFELKKENLEKEIDEKNKEIEEL 573
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
696-912 |
3.14e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 3.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 696 SESKNEVQRQEIEVLKRDKEQACCDLEELSTQTQKYKDEMSQLNCRVLQLEGEPSGLHTQKEENHGAIQVLMKKLEEAGC 775
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 776 REEQQGDQIQNLKIELERVNEECQYLRLSQAEltESLEESRSQLYsvqlrleaaqsqHGRIVQRLQEQMSQLVP-GARVA 854
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLALLLSPE--DFLDAVRRLQY------------LKYLAPARREQAEELRAdLAELA 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1720401262 855 ELQHLLNVKEEEARRLSAQQEEYRQQLKAREDQVEDAEARLRNVEWLLQEKVEELRKQ 912
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
7-443 |
3.80e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.54 E-value: 3.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 7 ALEQLTEKKIKHLEQEYRGRLSLLRSEVEMERElfWEQARRQRAVLEQDVGRLQAEETSLREKLTLALKENSRLQKEIIE 86
Cdd:COG1196 348 EAEEELEEAEAELAEAEEALLEAEAELAEAEEE--LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEE 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 87 VVEKLSDSEKLVLRLQSDLQFVLKDKLepqsmELLAQEEQFTAILNDYELKCRDLQDRNDELQAELEGLRLRLPRSRQSP 166
Cdd:COG1196 426 LEEALAELEEEEEEEEEALEEAAEEEA-----ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 167 AGTPGthrrRIPGRGPADNLFVGESTPVSLETEIMVEQMKEHYQELRMQLETKVNYYEKEIEVMKR-NFEKDKKEMEQAF 245
Cdd:COG1196 501 ADYEG----FLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAiEYLKAAKAGRATF 576
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 246 QLEVSVLEGQKADLEALYAKSQEVILGLKEQLQDAAQSPEPAPAGLahccAQALCTLAQRLEVEMHLRHQDQLLQIRQEA 325
Cdd:COG1196 577 LPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTL----LGRTLVAARLEAALRRAVTLAGRLREVTLE 652
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 326 EEELNQKLSWLEAQHAACCESLSLQHQCEKDQLLQTHLQRVKDLAAQLDLEKGRREEREQEVLAHCRRQQLKLQAVMSEE 405
Cdd:COG1196 653 GEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEA 732
|
410 420 430
....*....|....*....|....*....|....*...
gi 1720401262 406 QARICRSFTLEKEKLEQTYREQVEGLVQEADVLRALLK 443
Cdd:COG1196 733 EREELLEELLEEEELLEEEALEELPEPPDLEELERELE 770
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
778-915 |
5.39e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 5.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 778 EQQGDQIQNLKIELERVNEECQYLRLSQAE-----LTESLEESRSQLYSVQLRLEAAQSQHGRI---VQRLQEQMSQlVP 849
Cdd:COG4913 258 RELAERYAAARERLAELEYLRAALRLWFAQrrlelLEAELEELRAELARLEAELERLEARLDALreeLDELEAQIRG-NG 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 850 GARVAELQHLLNVKEEEARRLSAQQEEY---------------------RQQLKAREDQVEDAEARLRNVEWLLQEKVEE 908
Cdd:COG4913 337 GDRLEQLEREIERLERELEERERRRARLeallaalglplpasaeefaalRAEAAALLEALEEELEALEEALAEAEAALRD 416
|
....*..
gi 1720401262 909 LRKQFEK 915
Cdd:COG4913 417 LRRELRE 423
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
651-969 |
6.33e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 6.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 651 QLEDVVRALEKADS-RESYRAELQRLSEENLVLKSDLGKIQLELETSESKNEVQRQEIEVLkrDKEQACCDLEELSTQT- 728
Cdd:PRK04863 363 RLEEQNEVVEEADEqQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQAL--ERAKQLCGLPDLTADNa 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 729 ----QKYKDEMSQLNCRVLQLEgepsglhtQKeenhgaiqvlMKKLEEAGCREEQQGDQIQNLKIELERvNEECQYLRls 804
Cdd:PRK04863 441 edwlEEFQAKEQEATEELLSLE--------QK----------LSVAQAAHSQFEQAYQLVRKIAGEVSR-SEAWDVAR-- 499
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 805 qaeltESLEESRSQLYSVQlRLEAAQSQHGRIVQRLQEQMSQLvpgARVAELQHLLNVKEEEARRLSAQQEEYRQQLKAR 884
Cdd:PRK04863 500 -----ELLRRLREQRHLAE-QLQQLRMRLSELEQRLRQQQRAE---RLLAEFCKRLGKNLDDEDELEQLQEELEARLESL 570
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 885 EDQVEDAEAR---LRNVEWLLQEKVEELRKQFEKNTRSDLLLKELY------VENAH-LMKAVQLTEEKQRGAEKKNCVL 954
Cdd:PRK04863 571 SESVSEARERrmaLRQQLEQLQARIQRLAARAPAWLAAQDALARLReqsgeeFEDSQdVTEYMQQLLERERELTVERDEL 650
|
330
....*....|....*
gi 1720401262 955 EEKVRALNKLISKMA 969
Cdd:PRK04863 651 AARKQALDEEIERLS 665
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
12-164 |
1.13e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.12 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 12 TEKKIKHLEQEY---RGRLSLLRSEVEMERELFwEQARRQRAVLEQDVGRLQAEETSLREKLTLALKENSRLQKEIIEVV 88
Cdd:TIGR02168 780 AEAEIEELEAQIeqlKEELKALREALDELRAEL-TLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720401262 89 EKLSDSEKLVLRLQSDLQFVL--KDKLEPQSMELLAQEEQFTAILNDYELKCRDLQDRNDELQAELEGLRLRLPRSRQ 164
Cdd:TIGR02168 859 AEIEELEELIEELESELEALLneRASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEV 936
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
764-961 |
1.76e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 764 QVLMKKLE-EAGCREEQQGDQIQNLKIELERVNEECQYLRLSQ---AELTESLEESRSQLYSVQLRLEAAQSQhgriVQR 839
Cdd:COG4717 45 AMLLERLEkEADELFKPQGRKPELNLKELKELEEELKEAEEKEeeyAELQEELEELEEELEELEAELEELREE----LEK 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 840 LQEQMSQLVPGARVAELQHLLNVKEEEARRLSAQQEEYRQ---QLKAREDQVEDAEARLRN--------VEWLLQEKVEE 908
Cdd:COG4717 121 LEKLLQLLPLYQELEALEAELAELPERLEELEERLEELREleeELEELEAELAELQEELEElleqlslaTEEELQDLAEE 200
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1720401262 909 LRKQFEKNTRSDLLLKELYVENAHLMKAVQLTEEKQRGAEKKNCVLEEKVRAL 961
Cdd:COG4717 201 LEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLL 253
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
623-964 |
1.99e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.44 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 623 SELPNPQEATVMPAMSESEMKDVKIKLLQLEDVVRALEKADSRESYRAELQRLSEEnlVLKSDLGKIQLE----LETSES 698
Cdd:PTZ00121 1374 EEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEE--KKKADEAKKKAEeakkADEAKK 1451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 699 KNEVQRQEIEVLKRDKEQACCDLEELSTQTQKYKDEMSQlncRVLQLEGEPSGLHTQKEENHGAIQvlMKKLEEAGCREE 778
Cdd:PTZ00121 1452 KAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKK---KAEEAKKKADEAKKAAEAKKKADE--AKKAEEAKKADE 1526
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 779 QQGDQIQNLKIELERVNEECQYLRLSQAELTESLEESRS----------QLYSVQLRLEAAQSQHGRIVQRLQEQMSQLV 848
Cdd:PTZ00121 1527 AKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKaeeakkaeedKNMALRKAEEAKKAEEARIEEVMKLYEEEKK 1606
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 849 PGARVAELQHLLNVKEEEARRLSAQQEEYRQQLKAREDQVEDAEaRLRNVEWLLQEKVEELRKQFEKNTRSDLLLKELYV 928
Cdd:PTZ00121 1607 MKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE-ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEE 1685
|
330 340 350
....*....|....*....|....*....|....*.
gi 1720401262 929 ENAHLMKAVQLTEEKQRGAEKKNCVLEEKVRALNKL 964
Cdd:PTZ00121 1686 DEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL 1721
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
639-891 |
2.70e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 2.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 639 ESEMKDVKIKLLQLEDVVRALEKADSRESYRAELQRLSEenlvlksdlgkiQLELETSESKNEVQRQEIEVLKRDKEQAC 718
Cdd:COG4913 241 HEALEDAREQIELLEPIRELAERYAAARERLAELEYLRA------------ALRLWFAQRRLELLEAELEELRAELARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 719 CDLEELSTQTQkykdemsqlncrvlQLEGEPSGLHTQKEENHGAiqvlmkkleeagcREEQQGDQIQNLKIELERVNEEC 798
Cdd:COG4913 309 AELERLEARLD--------------ALREELDELEAQIRGNGGD-------------RLEQLEREIERLERELEERERRR 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 799 QYLRLSQAELTESLEESRSQLYSVQLRLEAAQSQHGRIVQRLQEQMSQLvpGARVAELQHLLNVKEEEARRLSAQQEEYR 878
Cdd:COG4913 362 ARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEA--EAALRDLRRELRELEAEIASLERRKSNIP 439
|
250
....*....|...
gi 1720401262 879 QQLKAREDQVEDA 891
Cdd:COG4913 440 ARLLALRDALAEA 452
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
7-164 |
3.76e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.08 E-value: 3.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 7 ALEQLTEKKIKHLEQEyRGRLSLLRSEVEMERElfweQARRQRAVLEQDVGRLQAEETSLREKLTLALKENSRLQKEIIE 86
Cdd:COG1196 288 AEEYELLAELARLEQD-IARLEERRRELEERLE----ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAE 362
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720401262 87 VVEKLSDSEKLVLRLQSDLQFVLKDKLepqsmELLAQEEQFTAILNDYELKCRDLQDRNDELQAELEGLRLRLPRSRQ 164
Cdd:COG1196 363 AEEALLEAEAELAEAEEELEELAEELL-----EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEE 435
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
629-960 |
4.18e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 4.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 629 QEATVMPAMSESEMKDVKIKLLQLEDVVRALEKADSRESYRAE-LQRLSEEnlVLKSDLGKIQLElETSESKNEVQRQEI 707
Cdd:PTZ00121 1339 EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADaAKKKAEE--KKKADEAKKKAE-EDKKKADELKKAAA 1415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 708 EVLKRDKEQACCDLEELSTQTQKYKDEMSQLNcrvlqlEGEPSGLHTQKEENhgaiqvLMKKLEEAGCREEQQGDQIQNL 787
Cdd:PTZ00121 1416 AKKKADEAKKKAEEKKKADEAKKKAEEAKKAD------EAKKKAEEAKKAEE------AKKKAEEAKKADEAKKKAEEAK 1483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 788 KI-ELERVNEECQylrlSQAELTESLEESRSQLYSVQLRLEAAQSQHGRIVQ--RLQEQMSQLVPGARVAELQHLLNVKE 864
Cdd:PTZ00121 1484 KAdEAKKKAEEAK----KKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEeaKKADEAKKAEEKKKADELKKAEELKK 1559
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 865 EEARRLSAQ---QEEYRQQLKAREDQVEDAE-ARLRNVEWLLQE----KVEELRKQFEKNTRSDLLLKELYVENAHLMKA 936
Cdd:PTZ00121 1560 AEEKKKAEEakkAEEDKNMALRKAEEAKKAEeARIEEVMKLYEEekkmKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLK 1639
|
330 340
....*....|....*....|....
gi 1720401262 937 VQLTEEKQRGAEKKNCVLEEKVRA 960
Cdd:PTZ00121 1640 KKEAEEKKKAEELKKAEEENKIKA 1663
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
660-967 |
4.27e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.16 E-value: 4.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 660 EKADSRESYRAELQRLSEENLVLKSDLGKIQLELETSESKNEVQRQEIEVLKRDKEQACCDLEELSTQTQKYKDEMSQLN 739
Cdd:TIGR04523 367 EKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLT 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 740 CRVLQLEGEPSGLHTQKEENHGAIQVLMKKLEEAGCREEQQGDQIQNLKIELERVNEECQYLRLSQAELTE---SLEESR 816
Cdd:TIGR04523 447 NQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKkisSLKEKI 526
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 817 SQLYSVQLRLEAAQSQHGRIVQRLQEQMSQLVPGARVAELQHLLNVKEEEARRLSAQQEEYRQQLKAREDQVEDAEARLR 896
Cdd:TIGR04523 527 EKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIE 606
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720401262 897 NVEWLLQEKVEELRKQFEKNTRSDLLLKELYVENAHLMKAVQL-------TEEKQRGAEKKNCVLEEKVRALNKLISK 967
Cdd:TIGR04523 607 EKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQiketikeIRNKWPEIIKKIKESKTKIDDIIELMKD 684
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
660-972 |
4.60e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.09 E-value: 4.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 660 EKADSRESYRAELQRLSEENLVLKSDLGKIQLELETSESKNEVQRQEIEVLkrDKEQACCDLEELSTQT-----QKYKDE 734
Cdd:COG3096 372 EAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQAVQAL--EKARALCGLPDLTPENaedylAAFRAK 449
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 735 MSQLNCRVLQLEGEPSGLHTQKEENHGAIQVLMKKL-----EEAGCREEQQGDQIQNLKIELERVneecQYLRLSQAELT 809
Cdd:COG3096 450 EQQATEEVLELEQKLSVADAARRQFEKAYELVCKIAgeverSQAWQTARELLRRYRSQQALAQRL----QQLRAQLAELE 525
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 810 ESLEesrsQLYSVQLRLEAAQSQHGRIVQRLQEQMSQLvpgarvAELQHLLNVKEEEARRLSAQQEEYRQQLKAREDQVE 889
Cdd:COG3096 526 QRLR----QQQNAERLLEEFCQRIGQQLDAAEELEELL------AELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIK 595
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 890 daEARLRNVEWL-LQEKVEELRKQfekntrsdllLKELYVENAHLMKAVQLTEEKQRGAEKKNCVLEEKVRALNKLISKM 968
Cdd:COG3096 596 --ELAARAPAWLaAQDALERLREQ----------SGEALADSQEVTAAMQQLLEREREATVERDELAARKQALESQIERL 663
|
....
gi 1720401262 969 APAS 972
Cdd:COG3096 664 SQPG 667
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
26-159 |
5.18e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.81 E-value: 5.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 26 RLSLLRSEVEMERELFwEQARRQRAVLEQDVGRLQAEETSLREKLTLALKENSRLQKEIIEVVEKLSDSEKLVLRLQSDL 105
Cdd:TIGR02168 345 KLEELKEELESLEAEL-EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI 423
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1720401262 106 QFVLKDKLEPQSMELLAQEEQFTAILNDYELKCRDLQDRNDELQAELEGLRLRL 159
Cdd:TIGR02168 424 EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQAL 477
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
763-972 |
5.24e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.20 E-value: 5.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 763 IQVLMKKLEEAGCREEQQGDQIQNLKIELERVNEECQYLRLSQAELTESLEESRSQLYSVQLRLEAAQSQHGRIVQRLQE 842
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 843 QMSQLVPGARVAELQ---------HLLNVKEEEARRLSAQQEEYRQQLKAREDQVEDAEARLRNVEWLLQEKVEELRKQF 913
Cdd:COG3883 98 SGGSVSYLDVLLGSEsfsdfldrlSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQ 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1720401262 914 EKNTRsdlLLKELYVENAHLMKAVQLTEEKQRGAEKKNCVLEEKVRALNKLISKMAPAS 972
Cdd:COG3883 178 AEQEA---LLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAA 233
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
703-917 |
6.46e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 6.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 703 QRQEIEVLKRDKEQAccDLEELSTQTQKYKDEMSQLNCRVLQLEGEPSGLHTQKEENHGAIQVLMKKLEEAGcreeqqGD 782
Cdd:COG4913 267 ARERLAELEYLRAAL--RLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNG------GD 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 783 QIQNLKIELERVNEECQYLRLSQAELTESLEesrsqlysvQLRLEAAQSQHGriVQRLQEQMSQLVpgARVAELQHLLnv 862
Cdd:COG4913 339 RLEQLEREIERLERELEERERRRARLEALLA---------ALGLPLPASAEE--FAALRAEAAALL--EALEEELEAL-- 403
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1720401262 863 kEEEARRLSAQqeeyRQQLKAREDQVEDAEARLRNVEWLLQEKVEELRKQFEKNT 917
Cdd:COG4913 404 -EEALAEAEAA----LRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEAL 453
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
768-961 |
7.51e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.11 E-value: 7.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 768 KKLEEAGCREEQQGDQIQNLKIELERV--NEECQYLRLSQAELTESLEESRSQLYSVQL----RLEAAQSQHgrivQRLQ 841
Cdd:pfam17380 316 RKLEEAEKARQAEMDRQAAIYAEQERMamERERELERIRQEERKRELERIRQEEIAMEIsrmrELERLQMER----QQKN 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 842 EQMSQLVPGARVAEL-----QHLLNVKEEEARRLSAQQEEYRQ-QLKAREDQVEDAEARLRNVEWLLQEKVEELRKQFEK 915
Cdd:pfam17380 392 ERVRQELEAARKVKIleeerQRKIQQQKVEMEQIRAEQEEARQrEVRRLEEERAREMERVRLEEQERQQQVERLRQQEEE 471
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1720401262 916 NTRSDLLLKELYVENAHLMKAVQLTEEKQRGAEKKNCVLEEKVRAL 961
Cdd:pfam17380 472 RKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKL 517
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
639-915 |
8.14e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.05 E-value: 8.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 639 ESEMKDVKIKLLQLEDVVRALEKADSRESYRAELQRLSEENLVLKSDLGKIQLE-LETSESKNEVQRQEIEVLKRDKEQA 717
Cdd:PRK03918 465 EKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEeLEKKAEEYEKLKEKLIKLKGEIKSL 544
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 718 CCDLEELstqtQKYKDEMSQLNCRVLQLEGEPSGLHTQ-KEENHGAIQVL---MKKLEEAGCREEQQGDQIQNLKIELER 793
Cdd:PRK03918 545 KKELEKL----EELKKKLAELEKKLDELEEELAELLKElEELGFESVEELeerLKELEPFYNEYLELKDAEKELEREEKE 620
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 794 VNEECQYLRLSQAELTE---SLEESRSQLYsvQLRLEAAQSQHGRIVQRLQEqMSQLVPGARvAELQHLLNVKEEEARRL 870
Cdd:PRK03918 621 LKKLEEELDKAFEELAEtekRLEELRKELE--ELEKKYSEEEYEELREEYLE-LSRELAGLR-AELEELEKRREEIKKTL 696
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1720401262 871 saqqeeyrQQLKAREDQVEDAEARLRNVEWLLqEKVEELRKQFEK 915
Cdd:PRK03918 697 --------EKLKEELEEREKAKKELEKLEKAL-ERVEELREKVKK 732
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
727-950 |
8.20e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 8.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 727 QTQKYKDEMSQLNcrvlQLEGEPSGLHTQKEENHGAIQVLMKKLEEAGCREEQQGDQIQNLKIELERVNEECQYLRLSQA 806
Cdd:COG4942 18 QADAAAEAEAELE----QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 807 ELTESLEEsRSQLYSVQLRLEAAQSQHGRI-----------VQRLQEQMSQLVPgARVAELQHLLNVKEEeARRLSAQQE 875
Cdd:COG4942 94 ELRAELEA-QKEELAELLRALYRLGRQPPLalllspedfldAVRRLQYLKYLAP-ARREQAEELRADLAE-LAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720401262 876 EYRQQLKAREDQVEDAEARLRNVEWLLQEKVEELRKQFEKNTRSdllLKELYVENAHLMKAVQLTEEKQRGAEKK 950
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAE---LAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
651-913 |
8.86e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.10 E-value: 8.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 651 QLEDVVRALEkaDSRESYRAELQRLSEENLVLKSDLGKIQLEletSESKNEVQRQEIEVLKRDKEQACCDLEELSTQTQK 730
Cdd:pfam15921 86 QVKDLQRRLN--ESNELHEKQKFYLRQSVIDLQTKLQEMQME---RDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCL 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 731 YKDEMSQLNCRVLQLEGepsgLHTQKEENHGAIQVLMKKLEEAGCREEQQGDQIQNLKIE---------LERVNEECQYL 801
Cdd:pfam15921 161 KEDMLEDSNTQIEQLRK----MMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRslgsaiskiLRELDTEISYL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 802 RLSQAELTESLEESRSQ--------LYSVQLRLEAAQSQHGRIVQRLQEQMSQLVPGARvaELQHLLNVKEEEARRlsaQ 873
Cdd:pfam15921 237 KGRIFPVEDQLEALKSEsqnkiellLQQHQDRIEQLISEHEVEITGLTEKASSARSQAN--SIQSQLEIIQEQARN---Q 311
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1720401262 874 QEEYRQQLKAREDQVEDAEARLRNVEWLLQEKVEELRKQF 913
Cdd:pfam15921 312 NSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQL 351
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
752-915 |
9.62e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 39.61 E-value: 9.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 752 LHTQKEENHGAIQVLMKKLEEAGCREEQQGDQIQNLKIE--LERVNEECQYLRLSQAELTESLEESRSQLYSVQLRLEAA 829
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKngLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAAL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720401262 830 QSQHGR------------IVQRLQEQMSQLVpgARVAELQHLLNVKEEEARRLSAQQEEYRQQLKAREDQV----EDAEA 893
Cdd:COG3206 246 RAQLGSgpdalpellqspVIQQLRAQLAELE--AELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRIlaslEAELE 323
|
170 180
....*....|....*....|..
gi 1720401262 894 RLRNVEWLLQEKVEELRKQFEK 915
Cdd:COG3206 324 ALQAREASLQAQLAQLEARLAE 345
|
|
| |
