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Conserved domains on  [gi|1720413747|ref|XP_030110414|]
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GATOR1 complex protein DEPDC5 isoform X8 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DEPDC5_CTD pfam19418
DEPDC5 protein C-terminal region; This entry represents the C-terminal domain (CTD) (residues ...
 1106-1413 0e+00

DEPDC5 protein C-terminal region; This entry represents the C-terminal domain (CTD) (residues 1,291-1,603) of the DEPDC5 protein. It contains two structurally similar lobes and has a pseudo-2-fold rotational symmetry. Each half consists of a five-stranded beta-sheet, with an alpha-helix covering one side. The CTD is located in the core of DEPDC5 and contacts all the other domains of DEPDC5 except the NTD, making it the central organizer of this multi-domain protein.


:

Pssm-ID: 466071  Cd Length: 303  Bit Score: 567.40  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720413747 1106 WYTAGADDFASFQRKWFEVAFVAEELVHSEIPAFLLPWLPSRPASyasrhsSFSRSFGGRSQAAALLAATVPEQRTVTLD 1185
Cdd:pfam19418    1 WSTAGVDDFASFQRKWFEVAFVAEELVHSEIPAFLLPWLPSRRHS------SFSRSFGGRSQAAAYLAATVPEQRTVTLD 74

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720413747 1186 VDVNNRTDRLEWCSCYYHGNFSLNAAFEIKLHWMAVTATVLFEMVQGWHRKATSCGFLLVPVLEGPFALPSYLYGDPLRA 1265
Cdd:pfam19418   75 VDVNNRTDRLEWCSCYYHGNFSLNAAFEIKLHWMAVTAAVLFEMVQGWHRKATSCGFLLVPVLEGPFALPSYLYGDPLRA 154

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720413747 1266 QLFIPLNLSCLLKEGSEHLFDSFEPETYWDRMHLFQEAIAHRFGFVQDKYSVSAFNFPAENKPQYIHVTGTVFLQLPYSK 1345
Cdd:pfam19418  155 QLFIPLNISCLLKEGSEHLFDSFEPETYWDRMHLFQEAILHRFGFVQDKYSASAFNFPAENKPQYIHVTGTVFLQLPYSK 234

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720413747 1346 RKFSGQQRRRRNSTsSTNQNMF--CEERVGYNWAYNTMLTKTWRSSATGDEKFADRLLKDFTDFCINRDN 1413
Cdd:pfam19418  235 RKTSGQQRRRSNSE-EYITRHFsgAEERVGYLWAYNTMLTKRWRTPATGDETFADRLLKDFTDFCANEDN 303
IML1 pfam12257
Vacuolar membrane-associated protein Iml1; Proteins in this family contain a DEP domain, which ...
 1-212 4.59e-112

Vacuolar membrane-associated protein Iml1; Proteins in this family contain a DEP domain, which is a globular domain of about 80 residues. This entry includes vacuolar membrane-associated protein Iml1 and DEP domain-containing protein 5/DDB_G0279099. In Saccharomyces cerevisiae, Iml1 is a subunit of both the SEA (Seh1-associated) and Iml1 complexes (Iml1-Npr2-Npr3). SEA complex is associates dynamically with the vacuole and is involved in autophagy. Iml1 complex is required for non-nitrogen-starvation (NNS)-induced autophagy.


:

Pssm-ID: 463510  Cd Length: 278  Bit Score: 354.12  E-value: 4.59e-112
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720413747    1 MVYIFIQMSCEMWDFDIYGDLYFEKAVNGFLADLFTKWKEKNCSHEVTVVLFSRTFYDAKSIDEFPEInrasiqEDHKGR 80
Cdd:pfam12257   71 RYTIFIQMSREMWDFDEDGELYFEKVVNGFLPELFKRWKELGTHHLVTIVLFSRVFYDTSEIDDEAGP------RDERGR 144

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720413747   81 FYEDFYKVVVQNERREEWTSLLVTIKKLFIQYP--VLVRLEQAGGFPQGDNSTSAQGNYLEAINLSFNVFDKHYINRNFD 158
Cdd:pfam12257  145 LYKDFYRVVVDQESSGDWTSILVTLKKEFANFQrdILLHHHEKRTRIAGRNSPAIKGNILEAINLALNLFEDHYIDRDLR 224

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1720413747  159 RTGQMSVVITPGVGVFEVDRLLMILTKQRMIDNGIGVDLVCMGEQPLHAVPLFK 212
Cdd:pfam12257  225 RTGTSIIVITPGTGVFEVDYDLLRLTTERLLDNGIGIDLVCLSKPPLHSVPLFR 278
DEP_DEPDC5-like cd04449
DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in ...
 1007-1088 4.66e-32

DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.


:

Pssm-ID: 239896  Cd Length: 83  Bit Score: 120.07  E-value: 4.66e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720413747 1007 EILEAMKHPST-GVQLLSEQKGLSPCCFISAEVVHWLMNNVEGVQTQAMGIDIMQKMLEEQLITHASGeaWRTFIYGFYF 1085
Cdd:cd04449      3 EIAEAMRDPSGiGIFDRSWHKGLPSNCFIGSEAVSWLINNFEDVDTREEAVELGQELMNEGLIEHVSG--RHPFLDGFYF 80


                   ...
gi 1720413747 1086 YKI 1088
Cdd:cd04449     81 YYI 83
 
Name Accession Description Interval E-value
DEPDC5_CTD pfam19418
DEPDC5 protein C-terminal region; This entry represents the C-terminal domain (CTD) (residues ...
 1106-1413 0e+00

DEPDC5 protein C-terminal region; This entry represents the C-terminal domain (CTD) (residues 1,291-1,603) of the DEPDC5 protein. It contains two structurally similar lobes and has a pseudo-2-fold rotational symmetry. Each half consists of a five-stranded beta-sheet, with an alpha-helix covering one side. The CTD is located in the core of DEPDC5 and contacts all the other domains of DEPDC5 except the NTD, making it the central organizer of this multi-domain protein.


Pssm-ID: 466071  Cd Length: 303  Bit Score: 567.40  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720413747 1106 WYTAGADDFASFQRKWFEVAFVAEELVHSEIPAFLLPWLPSRPASyasrhsSFSRSFGGRSQAAALLAATVPEQRTVTLD 1185
Cdd:pfam19418    1 WSTAGVDDFASFQRKWFEVAFVAEELVHSEIPAFLLPWLPSRRHS------SFSRSFGGRSQAAAYLAATVPEQRTVTLD 74

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720413747 1186 VDVNNRTDRLEWCSCYYHGNFSLNAAFEIKLHWMAVTATVLFEMVQGWHRKATSCGFLLVPVLEGPFALPSYLYGDPLRA 1265
Cdd:pfam19418   75 VDVNNRTDRLEWCSCYYHGNFSLNAAFEIKLHWMAVTAAVLFEMVQGWHRKATSCGFLLVPVLEGPFALPSYLYGDPLRA 154

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720413747 1266 QLFIPLNLSCLLKEGSEHLFDSFEPETYWDRMHLFQEAIAHRFGFVQDKYSVSAFNFPAENKPQYIHVTGTVFLQLPYSK 1345
Cdd:pfam19418  155 QLFIPLNISCLLKEGSEHLFDSFEPETYWDRMHLFQEAILHRFGFVQDKYSASAFNFPAENKPQYIHVTGTVFLQLPYSK 234

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720413747 1346 RKFSGQQRRRRNSTsSTNQNMF--CEERVGYNWAYNTMLTKTWRSSATGDEKFADRLLKDFTDFCINRDN 1413
Cdd:pfam19418  235 RKTSGQQRRRSNSE-EYITRHFsgAEERVGYLWAYNTMLTKRWRTPATGDETFADRLLKDFTDFCANEDN 303
IML1 pfam12257
Vacuolar membrane-associated protein Iml1; Proteins in this family contain a DEP domain, which ...
 1-212 4.59e-112

Vacuolar membrane-associated protein Iml1; Proteins in this family contain a DEP domain, which is a globular domain of about 80 residues. This entry includes vacuolar membrane-associated protein Iml1 and DEP domain-containing protein 5/DDB_G0279099. In Saccharomyces cerevisiae, Iml1 is a subunit of both the SEA (Seh1-associated) and Iml1 complexes (Iml1-Npr2-Npr3). SEA complex is associates dynamically with the vacuole and is involved in autophagy. Iml1 complex is required for non-nitrogen-starvation (NNS)-induced autophagy.


Pssm-ID: 463510  Cd Length: 278  Bit Score: 354.12  E-value: 4.59e-112
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720413747    1 MVYIFIQMSCEMWDFDIYGDLYFEKAVNGFLADLFTKWKEKNCSHEVTVVLFSRTFYDAKSIDEFPEInrasiqEDHKGR 80
Cdd:pfam12257   71 RYTIFIQMSREMWDFDEDGELYFEKVVNGFLPELFKRWKELGTHHLVTIVLFSRVFYDTSEIDDEAGP------RDERGR 144

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720413747   81 FYEDFYKVVVQNERREEWTSLLVTIKKLFIQYP--VLVRLEQAGGFPQGDNSTSAQGNYLEAINLSFNVFDKHYINRNFD 158
Cdd:pfam12257  145 LYKDFYRVVVDQESSGDWTSILVTLKKEFANFQrdILLHHHEKRTRIAGRNSPAIKGNILEAINLALNLFEDHYIDRDLR 224

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1720413747  159 RTGQMSVVITPGVGVFEVDRLLMILTKQRMIDNGIGVDLVCMGEQPLHAVPLFK 212
Cdd:pfam12257  225 RTGTSIIVITPGTGVFEVDYDLLRLTTERLLDNGIGIDLVCLSKPPLHSVPLFR 278
DEP_DEPDC5-like cd04449
DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in ...
 1007-1088 4.66e-32

DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.


Pssm-ID: 239896  Cd Length: 83  Bit Score: 120.07  E-value: 4.66e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720413747 1007 EILEAMKHPST-GVQLLSEQKGLSPCCFISAEVVHWLMNNVEGVQTQAMGIDIMQKMLEEQLITHASGeaWRTFIYGFYF 1085
Cdd:cd04449      3 EIAEAMRDPSGiGIFDRSWHKGLPSNCFIGSEAVSWLINNFEDVDTREEAVELGQELMNEGLIEHVSG--RHPFLDGFYF 80


                   ...
gi 1720413747 1086 YKI 1088
Cdd:cd04449     81 YYI 83
DEP smart00049
Domain found in Dishevelled, Egl-10, and Pleckstrin; Domain of unknown function present in ...
 1015-1088 3.16e-13

Domain found in Dishevelled, Egl-10, and Pleckstrin; Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).


Pssm-ID: 214489  Cd Length: 77  Bit Score: 66.15  E-value: 3.16e-13
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720413747  1015 PSTGVQLLSEQKGLS--PCCFISAEVVHWLMNNVEgVQTQAMGIDIMQKMLEEQLITHASGEAWRTFIYGFYFYKI 1088
Cdd:smart00049    1 PETGLKLRDRKYFLKtyPNCFTGSELVDWLMDNLE-IIDREEAVHLGQLLLDEGLIHHVNGPNKHTFKDSKALYRF 75
DEP pfam00610
Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); The DEP domain is responsible for ...
 1018-1088 5.67e-12

Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); The DEP domain is responsible for mediating intracellular protein targeting and regulation of protein stability in the cell. The DEP domain is present in a number of signaling molecules, including Regulator of G protein Signaling (RGS) proteins, and has been implicated in membrane targeting. New findings in yeast, however, demonstrate a major role for a DEP domain in mediating the interaction of an RGS protein to the C-terminal tail of a GPCR, thus placing RGS in close proximity with its substrate G protein alpha subunit.


Pssm-ID: 459867  Cd Length: 71  Bit Score: 62.22  E-value: 5.67e-12
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720413747 1018 GVQLLSEQKGLS--PCCFISAEVVHWLMNNVEgVQTQAMGIDIMQKMLEEQLITHASGEaWRTFIYGFYFYKI 1088
Cdd:pfam00610    1 GVKLKDRRKHLKtyPNCFTGSEAVDWLMDNLE-IITREEAVELGQLLLDQGLIHHVGDK-HGLFKDSYYFYRF 71
 
Name Accession Description Interval E-value
DEPDC5_CTD pfam19418
DEPDC5 protein C-terminal region; This entry represents the C-terminal domain (CTD) (residues ...
 1106-1413 0e+00

DEPDC5 protein C-terminal region; This entry represents the C-terminal domain (CTD) (residues 1,291-1,603) of the DEPDC5 protein. It contains two structurally similar lobes and has a pseudo-2-fold rotational symmetry. Each half consists of a five-stranded beta-sheet, with an alpha-helix covering one side. The CTD is located in the core of DEPDC5 and contacts all the other domains of DEPDC5 except the NTD, making it the central organizer of this multi-domain protein.


Pssm-ID: 466071  Cd Length: 303  Bit Score: 567.40  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720413747 1106 WYTAGADDFASFQRKWFEVAFVAEELVHSEIPAFLLPWLPSRPASyasrhsSFSRSFGGRSQAAALLAATVPEQRTVTLD 1185
Cdd:pfam19418    1 WSTAGVDDFASFQRKWFEVAFVAEELVHSEIPAFLLPWLPSRRHS------SFSRSFGGRSQAAAYLAATVPEQRTVTLD 74

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720413747 1186 VDVNNRTDRLEWCSCYYHGNFSLNAAFEIKLHWMAVTATVLFEMVQGWHRKATSCGFLLVPVLEGPFALPSYLYGDPLRA 1265
Cdd:pfam19418   75 VDVNNRTDRLEWCSCYYHGNFSLNAAFEIKLHWMAVTAAVLFEMVQGWHRKATSCGFLLVPVLEGPFALPSYLYGDPLRA 154

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720413747 1266 QLFIPLNLSCLLKEGSEHLFDSFEPETYWDRMHLFQEAIAHRFGFVQDKYSVSAFNFPAENKPQYIHVTGTVFLQLPYSK 1345
Cdd:pfam19418  155 QLFIPLNISCLLKEGSEHLFDSFEPETYWDRMHLFQEAILHRFGFVQDKYSASAFNFPAENKPQYIHVTGTVFLQLPYSK 234

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720413747 1346 RKFSGQQRRRRNSTsSTNQNMF--CEERVGYNWAYNTMLTKTWRSSATGDEKFADRLLKDFTDFCINRDN 1413
Cdd:pfam19418  235 RKTSGQQRRRSNSE-EYITRHFsgAEERVGYLWAYNTMLTKRWRTPATGDETFADRLLKDFTDFCANEDN 303
IML1 pfam12257
Vacuolar membrane-associated protein Iml1; Proteins in this family contain a DEP domain, which ...
 1-212 4.59e-112

Vacuolar membrane-associated protein Iml1; Proteins in this family contain a DEP domain, which is a globular domain of about 80 residues. This entry includes vacuolar membrane-associated protein Iml1 and DEP domain-containing protein 5/DDB_G0279099. In Saccharomyces cerevisiae, Iml1 is a subunit of both the SEA (Seh1-associated) and Iml1 complexes (Iml1-Npr2-Npr3). SEA complex is associates dynamically with the vacuole and is involved in autophagy. Iml1 complex is required for non-nitrogen-starvation (NNS)-induced autophagy.


Pssm-ID: 463510  Cd Length: 278  Bit Score: 354.12  E-value: 4.59e-112
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720413747    1 MVYIFIQMSCEMWDFDIYGDLYFEKAVNGFLADLFTKWKEKNCSHEVTVVLFSRTFYDAKSIDEFPEInrasiqEDHKGR 80
Cdd:pfam12257   71 RYTIFIQMSREMWDFDEDGELYFEKVVNGFLPELFKRWKELGTHHLVTIVLFSRVFYDTSEIDDEAGP------RDERGR 144

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720413747   81 FYEDFYKVVVQNERREEWTSLLVTIKKLFIQYP--VLVRLEQAGGFPQGDNSTSAQGNYLEAINLSFNVFDKHYINRNFD 158
Cdd:pfam12257  145 LYKDFYRVVVDQESSGDWTSILVTLKKEFANFQrdILLHHHEKRTRIAGRNSPAIKGNILEAINLALNLFEDHYIDRDLR 224

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1720413747  159 RTGQMSVVITPGVGVFEVDRLLMILTKQRMIDNGIGVDLVCMGEQPLHAVPLFK 212
Cdd:pfam12257  225 RTGTSIIVITPGTGVFEVDYDLLRLTTERLLDNGIGIDLVCLSKPPLHSVPLFR 278
DEP_DEPDC5-like cd04449
DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in ...
 1007-1088 4.66e-32

DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.


Pssm-ID: 239896  Cd Length: 83  Bit Score: 120.07  E-value: 4.66e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720413747 1007 EILEAMKHPST-GVQLLSEQKGLSPCCFISAEVVHWLMNNVEGVQTQAMGIDIMQKMLEEQLITHASGeaWRTFIYGFYF 1085
Cdd:cd04449      3 EIAEAMRDPSGiGIFDRSWHKGLPSNCFIGSEAVSWLINNFEDVDTREEAVELGQELMNEGLIEHVSG--RHPFLDGFYF 80


                   ...
gi 1720413747 1086 YKI 1088
Cdd:cd04449     81 YYI 83
DEP cd04371
DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first ...
 1007-1087 2.99e-13

DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered. The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction.


Pssm-ID: 239836  Cd Length: 81  Bit Score: 66.21  E-value: 2.99e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720413747 1007 EILEAMKHPSTGVQL--LSEQKGLSPCCFISAEVVHWLMNNVEGVqTQAMGIDIMQKMLEEQLITHASGEAWrTFIYGFY 1084
Cdd:cd04371      1 DLVRIMLDSDSGVPIkdRKYHLKTYPNCFTGSELVDWLLDNLEAI-TREEAVELGQALLKHGLIHHVSDDKH-TFRDSYA 78


                   ...
gi 1720413747 1085 FYK 1087
Cdd:cd04371     79 LYR 81
DEP smart00049
Domain found in Dishevelled, Egl-10, and Pleckstrin; Domain of unknown function present in ...
 1015-1088 3.16e-13

Domain found in Dishevelled, Egl-10, and Pleckstrin; Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).


Pssm-ID: 214489  Cd Length: 77  Bit Score: 66.15  E-value: 3.16e-13
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720413747  1015 PSTGVQLLSEQKGLS--PCCFISAEVVHWLMNNVEgVQTQAMGIDIMQKMLEEQLITHASGEAWRTFIYGFYFYKI 1088
Cdd:smart00049    1 PETGLKLRDRKYFLKtyPNCFTGSELVDWLMDNLE-IIDREEAVHLGQLLLDEGLIHHVNGPNKHTFKDSKALYRF 75
DEP pfam00610
Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); The DEP domain is responsible for ...
 1018-1088 5.67e-12

Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); The DEP domain is responsible for mediating intracellular protein targeting and regulation of protein stability in the cell. The DEP domain is present in a number of signaling molecules, including Regulator of G protein Signaling (RGS) proteins, and has been implicated in membrane targeting. New findings in yeast, however, demonstrate a major role for a DEP domain in mediating the interaction of an RGS protein to the C-terminal tail of a GPCR, thus placing RGS in close proximity with its substrate G protein alpha subunit.


Pssm-ID: 459867  Cd Length: 71  Bit Score: 62.22  E-value: 5.67e-12
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720413747 1018 GVQLLSEQKGLS--PCCFISAEVVHWLMNNVEgVQTQAMGIDIMQKMLEEQLITHASGEaWRTFIYGFYFYKI 1088
Cdd:pfam00610    1 GVKLKDRRKHLKtyPNCFTGSEAVDWLMDNLE-IITREEAVELGQLLLDQGLIHHVGDK-HGLFKDSYYFYRF 71
DEP_Epac cd04437
DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in Epac-like proteins. Epac (exchange ...
 1032-1100 4.92e-04

DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in Epac-like proteins. Epac (exchange proteins directly activated by cAMP) proteins are GEFs (guanine-nucleotide-exchange factors) for the small GTPases, Rap1 and Rap2. They are directly regulated by cyclic AMP, a second messenger that plays a role in the control of diverse cellular processes, such as cell adhesion and insulin secretion. Epac-like proteins share a common domain architecture, containing RasGEF, DEP and CAP-effector (cAMP binding) domains. The DEP domain is involved in membrane localization.


Pssm-ID: 239884  Cd Length: 125  Bit Score: 41.56  E-value: 4.92e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720413747 1032 CFISAEVVHWLMNNVEGVQTQAMGIDIMQKMLEEQLITHASGEawRTFIYGFYFYKIVMDkEPERVAMQ 1100
Cdd:cd04437     30 CCVGTELVDWLLQQSPCVQSRSQAVGMWQVLLEEGVLLHVDQE--LHFQDKYQFYRFSDD-ECSPAPLE 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
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