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Conserved domains on  [gi|1907082928|ref|XP_036012838|]
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UPF0450 protein C17orf58 homolog isoform X2 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NTR_like super family cl02512
NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in ...
 251-431 4.53e-19

NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the domain plays a role in controlling axon branching in neural development, while the common function of these modules in TIMPs appears to be binding to metzincins. A subset of this family is also known as the C345C domain because it occurs as a C-terminal domain in complement C3, C4 and C5. In C5, the domain interacts with various partners during the formation of the membrane attack complex.


The actual alignment was detected with superfamily member cd03576:

Pssm-ID: 470599  Cd Length: 124  Bit Score: 82.82  E-value: 4.53e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 251 PETQSCARACSADADEWEAYCASEFAVNGIVHDVDVLGAGMRLVTLLvdpDGLYKMSRLYITPDGFFFRVHILALDsssc 330
Cdd:cd03576     1 PTAALCQQKCRRTGTLESNYCSSEFVITGTVISMTRGPGSLHATVSI---IKLYKEGRLAITQAGKTMSVKITVVC---- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 331 hKPCPEFKpgieipspekaihrvlynatgdlsaaaqlllvtpapnslfkdqalsrashtPGSRYIVMGHIYH-KRRQLPS 409
Cdd:cd03576    74 -KQCPLLR---------------------------------------------------RGLNYILMGQVDEeGRGVIPP 101

                         170       180
                  ....*....|....*....|..
gi 1907082928 410 AllQVLRGRLRPGDGLIRGSSS 431
Cdd:cd03576   102 E--SFVMLYKTKHQKLLAALSN 121
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 95-264 2.83e-07

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.40  E-value: 2.83e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928   95 SPEAPVAERKAFSEGKTGSAAEMISCEPAPPP-HRKPDSRETPGPRAQPLPEfSRRPRAAYAGPRAWPDPRRRKTAPPAD 173
Cdd:PHA03247  2597 RPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPpSPSPAANEPDPHPPPTVPP-PERPRDDPAPGRVSRPRRARRLGRAAQ 2675

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928  174 NRA---GFRDAVHAPAALPGPRLAQAENRASPPEDSPRRALSRAVRPPG---ARAASPAHPNRPRAAAQPSG--TPQALS 245
Cdd:PHA03247  2676 ASSppqRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGpaaARQASPALPAAPAPPAVPAGpaTPGGPA 2755

                          170
                   ....*....|....*....
gi 1907082928  246 PEDREPETQSCARACSADA 264
Cdd:PHA03247  2756 RPARPPTTAGPPAPAPPAA 2774
 
Name Accession Description Interval E-value
NTR_PCOLCE cd03576
NTR domain, PCOLCE subfamily; Procollagen C-endopeptidase enhancers (PCOLCEs) are ...
 251-431 4.53e-19

NTR domain, PCOLCE subfamily; Procollagen C-endopeptidase enhancers (PCOLCEs) are extracellular matrix proteins that enhance the activity of procollagen C-proteases, by binding to the procollagen I C-peptide. They contain a C-terminal NTR domain, which have been suggested to possess inhibitory functions towards specific serine proteases but not towards metzincins, which are inhibited by the related TIMPs.


Pssm-ID: 239631  Cd Length: 124  Bit Score: 82.82  E-value: 4.53e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 251 PETQSCARACSADADEWEAYCASEFAVNGIVHDVDVLGAGMRLVTLLvdpDGLYKMSRLYITPDGFFFRVHILALDsssc 330
Cdd:cd03576     1 PTAALCQQKCRRTGTLESNYCSSEFVITGTVISMTRGPGSLHATVSI---IKLYKEGRLAITQAGKTMSVKITVVC---- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 331 hKPCPEFKpgieipspekaihrvlynatgdlsaaaqlllvtpapnslfkdqalsrashtPGSRYIVMGHIYH-KRRQLPS 409
Cdd:cd03576    74 -KQCPLLR---------------------------------------------------RGLNYILMGQVDEeGRGVIPP 101

                         170       180
                  ....*....|....*....|..
gi 1907082928 410 AllQVLRGRLRPGDGLIRGSSS 431
Cdd:cd03576   102 E--SFVMLYKTKHQKLLAALSN 121
PHA03247 PHA03247
large tegument protein UL36; Provisional
 95-264 2.83e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.40  E-value: 2.83e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928   95 SPEAPVAERKAFSEGKTGSAAEMISCEPAPPP-HRKPDSRETPGPRAQPLPEfSRRPRAAYAGPRAWPDPRRRKTAPPAD 173
Cdd:PHA03247  2597 RPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPpSPSPAANEPDPHPPPTVPP-PERPRDDPAPGRVSRPRRARRLGRAAQ 2675

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928  174 NRA---GFRDAVHAPAALPGPRLAQAENRASPPEDSPRRALSRAVRPPG---ARAASPAHPNRPRAAAQPSG--TPQALS 245
Cdd:PHA03247  2676 ASSppqRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGpaaARQASPALPAAPAPPAVPAGpaTPGGPA 2755

                          170
                   ....*....|....*....
gi 1907082928  246 PEDREPETQSCARACSADA 264
Cdd:PHA03247  2756 RPARPPTTAGPPAPAPPAA 2774
 
Name Accession Description Interval E-value
NTR_PCOLCE cd03576
NTR domain, PCOLCE subfamily; Procollagen C-endopeptidase enhancers (PCOLCEs) are ...
 251-431 4.53e-19

NTR domain, PCOLCE subfamily; Procollagen C-endopeptidase enhancers (PCOLCEs) are extracellular matrix proteins that enhance the activity of procollagen C-proteases, by binding to the procollagen I C-peptide. They contain a C-terminal NTR domain, which have been suggested to possess inhibitory functions towards specific serine proteases but not towards metzincins, which are inhibited by the related TIMPs.


Pssm-ID: 239631  Cd Length: 124  Bit Score: 82.82  E-value: 4.53e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 251 PETQSCARACSADADEWEAYCASEFAVNGIVHDVDVLGAGMRLVTLLvdpDGLYKMSRLYITPDGFFFRVHILALDsssc 330
Cdd:cd03576     1 PTAALCQQKCRRTGTLESNYCSSEFVITGTVISMTRGPGSLHATVSI---IKLYKEGRLAITQAGKTMSVKITVVC---- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 331 hKPCPEFKpgieipspekaihrvlynatgdlsaaaqlllvtpapnslfkdqalsrashtPGSRYIVMGHIYH-KRRQLPS 409
Cdd:cd03576    74 -KQCPLLR---------------------------------------------------RGLNYILMGQVDEeGRGVIPP 101

                         170       180
                  ....*....|....*....|..
gi 1907082928 410 AllQVLRGRLRPGDGLIRGSSS 431
Cdd:cd03576   102 E--SFVMLYKTKHQKLLAALSN 121
PHA03247 PHA03247
large tegument protein UL36; Provisional
 95-264 2.83e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.40  E-value: 2.83e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928   95 SPEAPVAERKAFSEGKTGSAAEMISCEPAPPP-HRKPDSRETPGPRAQPLPEfSRRPRAAYAGPRAWPDPRRRKTAPPAD 173
Cdd:PHA03247  2597 RPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPpSPSPAANEPDPHPPPTVPP-PERPRDDPAPGRVSRPRRARRLGRAAQ 2675

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928  174 NRA---GFRDAVHAPAALPGPRLAQAENRASPPEDSPRRALSRAVRPPG---ARAASPAHPNRPRAAAQPSG--TPQALS 245
Cdd:PHA03247  2676 ASSppqRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGpaaARQASPALPAAPAPPAVPAGpaTPGGPA 2755

                          170
                   ....*....|....*....
gi 1907082928  246 PEDREPETQSCARACSADA 264
Cdd:PHA03247  2756 RPARPPTTAGPPAPAPPAA 2774
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
150-268 2.74e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 49.87  E-value: 2.74e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 150 PRAAYAGPRAWPDPRRR--KTAPPADNRAGFRDAVHAPAALPGPRLAQAENRASPP-------EDSPRRALSRAVRPPGA 220
Cdd:PRK12323  374 PATAAAAPVAQPAPAAAapAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPApealaaaRQASARGPGGAPAPAPA 453

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1907082928 221 RAASPAhPNRPRAAAQPSGTPQALSPEDREPETQSCARACSADADEWE 268
Cdd:PRK12323  454 PAAAPA-AAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWE 500
PHA03247 PHA03247
large tegument protein UL36; Provisional
 124-246 6.06e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.17  E-value: 6.06e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928  124 PPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTA---PPADNRAGFRDAVHAPAALPGPR--LAQAEN 198
Cdd:PHA03247  2702 PPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGpatPGGPARPARPPTTAGPPAPAPPAapAAGPPR 2781

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1907082928  199 RASPPEDSPRRALSRAVRPPGARAASPAHPNRPRAAAQPSGTPQALSP 246
Cdd:PHA03247  2782 RLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLP 2829
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 95-269 1.72e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 47.29  E-value: 1.72e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928  95 SPEAPVAERKAfSEGKTGSAAEMISCEPAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPrrrkTAPPADN 174
Cdd:PRK07764  620 APAAPAAPAPA-GAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAP----AAPAAPA 694

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 175 RAGFRDAVHAPAALPGPRLAQAENRASPP----EDSPRRALSRAVRPPGARAASPAHPNRPRAAAQPSGTPQALSPEDRE 250
Cdd:PRK07764  695 GAAPAQPAPAPAATPPAGQADDPAAQPPQaaqgASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAP 774

                         170
                  ....*....|....*....
gi 1907082928 251 PETQSCARACSADADEWEA 269
Cdd:PRK07764  775 PPSPPSEEEEMAEDDAPSM 793
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
96-273 1.72e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 47.18  E-value: 1.72e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928  96 PEAPVAERKAFSEGKTGSAAEMISCEPAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTAPPADNR 175
Cdd:PRK12323  404 AAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARA 483

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 176 AGFRDAVHAPAALPGPRLAQAENRASPPEDS---PRRALSRAVRPPGARAASPAHPNRPRAAAQPSGTPQALSPEDREPE 252
Cdd:PRK12323  484 APAAAPAPADDDPPPWEELPPEFASPAPAQPdaaPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAP 563

                         170       180
                  ....*....|....*....|....
gi 1907082928 253 T---QSCARACSADADEWEAYCAS 273
Cdd:PRK12323  564 RpprASASGLPDMFDGDWPALAAR 587
PHA03247 PHA03247
large tegument protein UL36; Provisional
 46-239 2.43e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.24  E-value: 2.43e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928   46 TEPSPDHTSDPPRKEGeiPAAPFCFNAWGTLSTKMTARALWLLCLIVGWSPEAPVAERKAFSEGKTGSAAEMiSCEPAPP 125
Cdd:PHA03247  2756 RPARPPTTAGPPAPAP--PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPA-GPLPPPT 2832

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928  126 PHRKPDSRETPGPRAQPLP---------EFSRRP--RAAYAGPRAWPDPRRRKTAPPADNRAGFRDAVhAPAALPGPRLA 194
Cdd:PHA03247  2833 SAQPTAPPPPPGPPPPSLPlggsvapggDVRRRPpsRSPAAKPAAPARPPVRRLARPAVSRSTESFAL-PPDQPERPPQP 2911

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 1907082928  195 QAENRASPPEDSPRRALSRAVRPPGARAASPAHPN-RPRAAAQPSG 239
Cdd:PHA03247  2912 QAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTtDPAGAGEPSG 2957
PHA03378 PHA03378
EBNA-3B; Provisional
 43-244 2.61e-05

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 46.60  E-value: 2.61e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928  43 SWPTePSPDHTSDPPRKEGEIPA--APfcfNAWGTLSTKMTARALWLLCL----IVGWSPEAPVAERKAFSEgKTGSAAE 116
Cdd:PHA03378  596 PWPV-PHPSQTPEPPTTQSHIPEtsAP---RQWPMPLRPIPMRPLRMQPItfnvLVFPTPHQPPQVEITPYK-PTWTQIG 670

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 117 MISCEPAPPPHRKPDSRETPGPRAQPLPEF--SRRPRAAYAGPRAWPDPRRRKTAPPADNRAGFRDAVHAPAALPGPrlA 194
Cdd:PHA03378  671 HIPYQPSPTGANTMLPIQWAPGTMQPPPRAptPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPP--A 748

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1907082928 195 QAENRASPPEDSPRRALSRAVRPPGAR-----AASPAHPNRPRAAAQPSGTPQAL 244
Cdd:PHA03378  749 AAPGRARPPAAAPGRARPPAAAPGAPTpqpppQAPPAPQQRPRGAPTPQPPPQAG 803
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
95-244 5.43e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 45.61  E-value: 5.43e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928  95 SPEAPVAERKAFSEGKTGSAAEMISCEPAPPPHRKP---DSRETPGPRAQPLPefSRRPRAAYAGPRAWPDPR------- 164
Cdd:PRK07003  396 VPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAppaTADRGDDAADGDAP--VPAKANARASADSRCDERdaqppad 473

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 165 -RRKTAPPADNRAGFRDAVHAPAALPGPRLAQAENRASPPEDSPRRALSRAVRPPGARAASPAhPNRPRAAAQPSGTPQA 243
Cdd:PRK07003  474 sGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPT-PAAAAPAARAGGAAAA 552


                  .
gi 1907082928 244 L 244
Cdd:PRK07003  553 L 553
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 98-269 6.50e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 45.36  E-value: 6.50e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928  98 APVAERKAFSEGKTGSAAEMISCEPAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGP----RAWPDPRRRKTAPPAD 173
Cdd:PRK07764  591 APGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPehhpKHVAVPDASDGGDGWP 670

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 174 NRAGfRDAVHAPAALPGPRLAQAENRASPPEDSPRRALSRAVRPPGARAASPAHPNRPRAAAQPSGTPQALSPEDREPET 253
Cdd:PRK07764  671 AKAG-GAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPP 749

                         170
                  ....*....|....*.
gi 1907082928 254 QSCARACSADADEWEA 269
Cdd:PRK07764  750 DPAGAPAQPPPPPAPA 765
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
101-253 1.09e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.48  E-value: 1.09e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 101 AERKAFSEGKTGSAAEMISCEPAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPRRrktaPPAdnRAGFRD 180
Cdd:PRK12323  362 AFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARR----SPA--PEALAA 435

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907082928 181 AVHAPAALPGPRLAQAENRASPPEDSPRRALSRAVRPPgarAASPAHPNRPRAAAQPSGTPQALSPEDREPET 253
Cdd:PRK12323  436 ARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVA---AAAAAAPARAAPAAAPAPADDDPPPWEELPPE 505
PHA03247 PHA03247
large tegument protein UL36; Provisional
 121-261 1.16e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.93  E-value: 1.16e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928  121 EPAP-PPHRKPDSRETPgPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTA-----PPADNRAGFRDAVHAPAALPGPRLA 194
Cdd:PHA03247  2572 RPAPrPSEPAVTSRARR-PDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDthapdPPPPSPSPAANEPDPHPPPTVPPPE 2650

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907082928  195 QAENRASPPEDSPRRALSRAVRPPgaRAASPAHPNRPRAAAQPSGTPQALS-PEDREPETQSCARACS 261
Cdd:PHA03247  2651 RPRDDPAPGRVSRPRRARRLGRAA--QASSPPQRPRRRAARPTVGSLTSLAdPPPPPPTPEPAPHALV 2716
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 45-226 3.44e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.05  E-value: 3.44e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928  45 PTEPSPDHTSDPPRKEGEIPAAPFCFNAWGTLSTKMTARALWLLClIVGWSPEAPVAERKAFSEGKTGSAAEMISCEPAP 124
Cdd:PRK07764  621 PAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDG-GDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPA 699

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 125 PPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTAPPADNRAGFRDAVHAPAALPGPRLAQAENRASPPE 204
Cdd:PRK07764  700 QPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPP 779

                         170       180
                  ....*....|....*....|..
gi 1907082928 205 DSPRRALSRAVRPPGARAASPA 226
Cdd:PRK07764  780 SEEEEMAEDDAPSMDDEDRRDA 801
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 97-252 3.62e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.05  E-value: 3.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928  97 EAPVAERKAFSEGKTGSAAEMISCEPAPPPHRKPDSRETP---GPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTAPPAD 173
Cdd:PRK07764  371 ERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPapaAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPA 450

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907082928 174 NRAGFRDAVHAPAALPGPRLAQAENRASPPEDSprralsravrpPGARAASPAHPNRPRAAAQPSGTPQALSPEDREPE 252
Cdd:PRK07764  451 GGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPA-----------PPAAPAPAAAPAAPAAPAAPAGADDAATLRERWPE 518
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
109-293 3.92e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.91  E-value: 3.92e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 109 GKTGSAAEMISCEPAP---------PPHRKPDSRETPGPRAQPLPEFSR---------------RPRAAYAGPRAWPDPR 164
Cdd:PRK07003  347 GFTMTLLRMLAFEPAVtgggapgggVPARVAGAVPAPGARAAAAVGASAvpavtavtgaagaalAPKAAAAAAATRAEAP 426

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 165 RRKTAPPADNRAGFRDAV-HAPAALPGPRLAQAENRASPPEDSPRRALSRAVRPPGARAASPAHPNRPRAAAQPSGT--- 240
Cdd:PRK07003  427 PAAPAPPATADRGDDAADgDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATpaa 506

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1907082928 241 ---PQALSPEDREPETQSCARACSADADEWEAYCASEFAVNGIVHDVDVL-GAGMRL 293
Cdd:PRK07003  507 vpdARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLrNAGMRV 563
PHA03247 PHA03247
large tegument protein UL36; Provisional
 123-254 5.15e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.62  E-value: 5.15e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928  123 APPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWpDPRRRKTAPPADNRAGFRDAVHAPAALPGPRLAQAENRASP 202
Cdd:PHA03247  2765 GPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPW-DPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPP 2843

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907082928  203 PEDSPRRALSRAVRP---------PGARAASPAHPNRPRA------AAQPSGTPQALSPEDREPETQ 254
Cdd:PHA03247  2844 GPPPPSLPLGGSVAPggdvrrrppSRSPAAKPAAPARPPVrrlarpAVSRSTESFALPPDQPERPPQ 2910
PHA03247 PHA03247
large tegument protein UL36; Provisional
 122-251 6.72e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.23  E-value: 6.72e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928  122 PAPPPHRKPD-------SRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTAPP-------ADNRAGFRDAVHAPAA 187
Cdd:PHA03247  2475 PGAPVYRRPAearfpfaAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPrmltwirGLEELASDDAGDPPPP 2554

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907082928  188 LPGPRLAQAENRASPPEDSPRRALSRAVRPPGARAASPAHPNRPRAAAQPSGTPQALSPEDREP 251
Cdd:PHA03247  2555 LPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLP 2618
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 95-258 7.95e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 41.65  E-value: 7.95e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928  95 SPEAPVAER----KAFSEGKTGSAAEMISCEPAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTAP 170
Cdd:PRK14965  362 APGAPVSELldrlEALERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPA 441

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 171 PADNRA-GFRDAVhAPAALPGPRLAQAENRASP------------PEDS--------PRR-----ALSRAV--RPPGARA 222
Cdd:PRK14965  442 AAASAGdRWRAFV-AFVKGKKPALGASLEQGSPlgvsaglleigfPEGSfelsamqdPDSraelkALAEQFfgRPTRLRI 520

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1907082928 223 ASpahpnrprAAAQPSGTPQALSPEDREPETQSCAR 258
Cdd:PRK14965  521 TV--------LAAPPGAAPPSLAEKKAAEREQRQAR 548
PHA03247 PHA03247
large tegument protein UL36; Provisional
 128-257 8.32e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.23  E-value: 8.32e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928  128 RKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTAPPADNRAGfrdAVHAPAALPGPRLAQAENRASPPEDSP 207
Cdd:PHA03247  2700 DPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPA---TPGGPARPARPPTTAGPPAPAPPAAPA 2776

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1907082928  208 RRALSRAVRPPGArAASPAHPNRPRAAAQPSGTPQALSPEDREPETQSCA 257
Cdd:PHA03247  2777 AGPPRRLTRPAVA-SLSESRESLPSPWDPADPPAAVLAPAAALPPAASPA 2825
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 140-259 9.04e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.90  E-value: 9.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 140 AQPLPEFSRRPRAAYAGPRAWPDPRRRKTAPPADNRAGFRDAVHAPAALPGPRLAQAENRASPPEDSPRRALSRAVRPPG 219
Cdd:PRK07764  375 LARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAP 454

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1907082928 220 ARAASPAHPNRPRAAAQPSGTPQALSPEDREPETQSCARA 259
Cdd:PRK07764  455 SPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAP 494
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 110-239 1.47e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.85  E-value: 1.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 110 KTGSAAEMISCEPAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTAPPAdnragfRDAVHAPAALP 189
Cdd:PRK14951  365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVA------APAAAAPAAAP 438

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1907082928 190 GPRLAQAENRASPPEDSPRRALSRAVR------PPGARAASPAHPNRPRAAAQPSG 239
Cdd:PRK14951  439 AAAPAAVALAPAPPAQAAPETVAIPVRvapepaVASAAPAPAAAPAAARLTPTEEG 494
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 118-264 1.48e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.12  E-value: 1.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 118 ISCEPAPPPHRKPDSReTPGPRAQPLPEFSRRPrAAYAGPRAWPDPRRRKTAPPADNRAGFRDAVHAPAALPGPRLAQAE 197
Cdd:PRK07764  584 VEAVVGPAPGAAGGEG-PPAPASSGPPEEAARP-AAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPD 661

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 198 NRASPPeDSPRRALSRAVRPPGARAASPAHP---NRPRAAAQPSGTPQALSPEDREPETQSCARACSADA 264
Cdd:PRK07764  662 ASDGGD-GWPAKAGGAAPAAPPPAPAPAAPAapaGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASA 730
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 149-269 1.85e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.74  E-value: 1.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 149 RPRAAYAGPRAWPDPRR-RKTAPPADNRAGFRDAVHAPAALPGPRLAQAENRASPPEdSPRRALSRAVRPPGARAASPAH 227
Cdd:PRK07764  398 APSAAAAAPAAAPAPAAaAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAP-SPPPAAAPSAQPAPAPAAAPEP 476

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1907082928 228 PNRPRAAAQPSGTPQALSPEDREPETQSCARACSADADEWEA 269
Cdd:PRK07764  477 TAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRERWPE 518
flhF PRK06995
flagellar biosynthesis protein FlhF;
150-259 1.95e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 40.33  E-value: 1.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 150 PRAAYAGPRAWPDPRrrkTAPPADNRAGfrdavhAPAALPGPRLAQAENRASPPEDSPRRALSRAVRPPGARAASPAHPN 229
Cdd:PRK06995   53 PPAAAAPAAAQPPPA---AAPAAVSRPA------APAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERA 123

                          90       100       110
                  ....*....|....*....|....*....|
gi 1907082928 230 RPRAAAQPSGTPQALSPEDREPETQSCARA 259
Cdd:PRK06995  124 AAENAARRLARAAAAAPRPRVPADAAAAVA 153
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
93-247 2.04e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.60  E-value: 2.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928  93 GWSPEAPVAERKAFSEGKTGSAAEMISCEPAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAYA---------GPRAWPDP 163
Cdd:PRK07003  369 GGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAppatadrgdDAADGDAP 448

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 164 RRRKTAPPADNRAGFRDAVHAPAALPGPRLAQAENRASPP--EDSPRRA-LSRAVRPPGARAASPAHPNRP-RAAAQPSG 239
Cdd:PRK07003  449 VPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAafEPAPRAAaPSAATPAAVPDARAPAAASREdAPAAAAPP 528


                  ....*...
gi 1907082928 240 TPQALSPE 247
Cdd:PRK07003  529 APEARPPT 536
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 40-254 2.50e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 40.45  E-value: 2.50e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928   40 VLFSWPTEPSPDHTSDPPRKEGEIPAAPFCFNAWGTLSTKMTAralwllclivgwSPEAPVAERKAFSEGKTGSAAEMIS 119
Cdd:PRK10263   292 VLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWA------------APVEPVTQTPPVASVDVPPAQPTVA 359

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928  120 CEPAPPPHrKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTAPPADNR--------AGFRDAVHAPAALPGP 191
Cdd:PRK10263   360 WQPVPGPQ-TGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQpaqqpyyaPAPEQPAQQPYYAPAP 438

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907082928  192 RLAQAENRASPPEDSPRRAlSRAVRPPGARAASPAHPNRPRAAAQPSGTPQALSPEDREPETQ 254
Cdd:PRK10263   439 EQPVAGNAWQAEEQQSTFA-PQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETK 500
dnaA PRK14086
chromosomal replication initiator protein DnaA;
121-268 2.74e-03

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 40.19  E-value: 2.74e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 121 EPAPPPhrkPDSRETPGPRaqpLPEFSRRPRAAYAGPRAWPdprRRKTAPPADNRagfrdavhaPAALPGprlAQAENRA 200
Cdd:PRK14086   94 EPAPPP---PHARRTSEPE---LPRPGRRPYEGYGGPRADD---RPPGLPRQDQL---------PTARPA---YPAYQQR 152

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907082928 201 SPPEDSPRRALSRAVRPPGArAASPAHPNRPRAAAQPSGTPQALSPEDREPETQSCARACSADADEWE 268
Cdd:PRK14086  153 PEPGAWPRAADDYGWQQQRL-GFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWD 219
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 98-267 3.75e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 39.85  E-value: 3.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928  98 APVAERKAFSEGKTGSAAEMISCEPAPPPHRKPDSRETPGPRAQPLPEfSRRPRAAYAGPRAWPDPRRRKTAPPADNRAG 177
Cdd:PRK07994  367 EPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVP-LPETTSQLLAARQQLQRAQGATKAKKSEPAA 445

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 178 FRDAVHAPAALPgpRLAQAENRASPPEDSPrralsrAVRPPGARAASPAHPNRPRAAAQPSGTPQALSPEDrEPETQSCA 257
Cdd:PRK07994  446 ASRARPVNSALE--RLASVRPAPSALEKAP------AKKEAYRWKATNPVEVKKEPVATPKALKKALEHEK-TPELAAKL 516

                         170
                  ....*....|
gi 1907082928 258 RACSADADEW 267
Cdd:PRK07994  517 AAEAIERDPW 526
PHA03247 PHA03247
large tegument protein UL36; Provisional
 124-246 4.73e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.54  E-value: 4.73e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928  124 PPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAwpdprRRKTAPPADNRAgfrdavHAPAALPGPRLAQAENRASPP 203
Cdd:PHA03247  2551 PPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRA-----RRPDAPPQSARP------RAPVDDRGDPRGPAPPSPLPP 2619

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1907082928  204 EDSPRRAlsravrPPGARAASPAHPNRPRAAAQPSGTPQALSP 246
Cdd:PHA03247  2620 DTHAPDP------PPPSPSPAANEPDPHPPPTVPPPERPRDDP 2656
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 130-265 7.34e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 38.81  E-value: 7.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 130 PDSRETPGPRAQPlPEFSRRPRAAYAGPRAWPDPRRRKTAPPADNRAGFRDAVHAPAALPGPRLAQAENRASPPEDSPRR 209
Cdd:PRK07764  381 LERRLGVAGGAGA-PAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPA 459

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1907082928 210 AlsravRPPGARAASPAHPNRPRAAAQPSGTPQALSPEDREPETQSCARACSADAD 265
Cdd:PRK07764  460 A-----APSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAA 510
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 121-282 7.40e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 38.93  E-value: 7.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 121 EPAPPPHRKpdsrETPGPRAQPLPEFSRRPRAayAGPRAwpdprrRKTAPPADNRAGfrdAVHAPAALPGPRLAQAENRA 200
Cdd:PRK14951  370 AEAAAPAEK----KTPARPEAAAPAAAPVAQA--AAAPA------PAAAPAAAASAP---AAPPAAAPPAPVAAPAAAAP 434

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 201 SPPEDSPRRALSRAVRPPgARAASPAHPNRPRAAAQPSGTPQalsPEDREPETQSCARACSADADEWEA----YCASEfA 276
Cdd:PRK14951  435 AAAPAAAPAAVALAPAPP-AQAAPETVAIPVRVAPEPAVASA---APAPAAAPAAARLTPTEEGDVWHAtvqqLAAAE-A 509


                  ....*.
gi 1907082928 277 VNGIVH 282
Cdd:PRK14951  510 ITALAR 515
flhF PRK06995
flagellar biosynthesis protein FlhF;
113-253 9.47e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 38.41  E-value: 9.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082928 113 SAAEMISCEPAPPPHRKPdsretPGPRAQPLPEFSRRPRAAYAGPRAWP-DPRRRKTAPPAdnragfrdavhapaalpgP 191
Cdd:PRK06995   44 ADSDLAALAPPAAAAPAA-----AQPPPAAAPAAVSRPAAPAAEPAPWLvEHAKRLTAQRE------------------Q 100

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907082928 192 RLAQAENRASPPEDSPRRALSRAVRPPGARAASPAHPNRPRAAAQPSgTPQALSPE--DREPET 253
Cdd:PRK06995  101 LVARAAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPAD-AAAAVADAvkARIERI 163
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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