|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
461-1221 |
1.67e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 95.12 E-value: 1.67e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 461 LVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQ---QDLQSKFVAKENEVQSLHS 537
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkelYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 538 KLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDK 617
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 618 QLKQTEDSLANEQDHLASKEEELKDvqnmnfllkaEVQKLQALANEQAATAHEVEKmqKSIHVKEDKIRLLEEQLQHEVA 697
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLED----------RRERLQQEIEELLKKLEEAEL--KELQAELEELEEELEELQEELE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 698 SKMEELKILSEQNKALQSEVQKLQTAVSQ-QPNKDVVEQMEKCIQEKDEKLRTVEELLETG---------LIQV------ 761
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQlQARLDSLERLQENLEGFSEGVKALLKNQSGLsgilgvlseLISVdegyea 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 762 ---ATREEELSAIRTENSTLTRE-VQELKAKQSDQVSFVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQ-- 835
Cdd:TIGR02168 538 aieAALGGRLQAVVVENLNAAKKaIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRka 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 836 ----LSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRdLRGRGTcaqvcSTPQFEELESVLKEKDNEIKRIEVKLKDTES 911
Cdd:TIGR02168 618 lsylLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDL-VRPGGV-----ITGGSAKTNSSILERRREIEELEEKIEELEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 912 DVSKMSELLKEVQEENKFLKCQLshqkhqqasfpsqEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERRQHVEA 991
Cdd:TIGR02168 692 KIAELEKALAELRKELEELEEEL-------------EQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 992 IELESKDLLKRLfptvsvpsNLNYSEWLRGFEKKAKACVAGTSDAEAVKVLEHRLKEASEMHTLLQLECEKYKSVLAETE 1071
Cdd:TIGR02168 759 LEAEIEELEERL--------EEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLE 830
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1072 GILQKLQRSVEQEESKWKIKADESQRMIKQMQSSFTASERELERLRQENKDMENLRREREHLEMELEKAEMERSTYVMEV 1151
Cdd:TIGR02168 831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907099791 1152 RELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHS-KLQNEQTERKKVADDLHKAQQSLNSIHSKI 1221
Cdd:TIGR02168 911 SELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSlTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
483-1222 |
2.75e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 87.80 E-value: 2.75e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 483 EQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAaqqdlqskfvakenevqslhsKLTDTLVSKQQLEQRLMQLMESEQK 562
Cdd:TIGR02168 192 EDILNELERQLKSLERQAEKAERYKELKAELREL---------------------ELALLVLRLEELREELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 563 RASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKD 642
Cdd:TIGR02168 251 AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKE---LYALANEISRLEQQKQILRERLANLERQLEELEAQLEE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 643 VQNMNFLLKAEVQKLQA----LANEQAATAHEVEKMQKSIHVKEDKIRLLEE----------QLQHEVASKMEELKILSE 708
Cdd:TIGR02168 328 LESKLDELAEELAELEEkleeLKEELESLEAELEELEAELEELESRLEELEEqletlrskvaQLELQIASLNNEIERLEA 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 709 QNKALQSEVQKLQTAVSQQPNKDVVEQMEKCIQEKDEKLRTVEEL---LETGLIQVATREEELSAIRTENSTLTREVQEL 785
Cdd:TIGR02168 408 RLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELqeeLERLEEALEELREELEEAEQALDAAERELAQL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 786 KAK----QSDQVSFVSLIEDLKRVIHEKDGqiKSVEELLEVELLKVANK-EKTVQLSVTSQvqeLQNLLRGKEEQVNSMK 860
Cdd:TIGR02168 488 QARldslERLQENLEGFSEGVKALLKNQSG--LSGILGVLSELISVDEGyEAAIEAALGGR---LQAVVVENLNAAKKAI 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 861 AALEDRDRDLRG-------RGTCAQVCSTPQFEELESVLKEKDNEIKrIEVKLKDTESDVSKMSELLKEVQEENkflkcQ 933
Cdd:TIGR02168 563 AFLKQNELGRVTflpldsiKGTEIQGNDREILKNIEGFLGVAKDLVK-FDPKLRKALSYLLGGVLVVDDLDNAL-----E 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 934 LSHQKHQQASFPSQE---------------ELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERRQHVEAIELESKD 998
Cdd:TIGR02168 637 LAKKLRPGYRIVTLDgdlvrpggvitggsaKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQ 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 999 LLKRLFPTVSVPSNLNYSewLRGFEKKAKACvagtsdAEAVKVLEHRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQ 1078
Cdd:TIGR02168 717 LRKELEELSRQISALRKD--LARLEAEVEQL------EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE 788
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1079 RSVEQEESKWKikadESQRMIKQMQSSFTASEREL----ERLRQENKDMENLRREREHLEMELEKAEMERSTYVMEVREL 1154
Cdd:TIGR02168 789 AQIEQLKEELK----ALREALDELRAELTLLNEEAanlrERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEEL 864
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907099791 1155 KDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQQSLNSIHSKIS 1222
Cdd:TIGR02168 865 EELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLE 932
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
449-976 |
1.71e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.83 E-value: 1.71e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 449 AELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAK 528
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 529 ENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEEL 608
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 609 HKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLL 688
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 689 EEQLQHEVASKMEELKILSEQNKALQSEVQKLQTAVSQQPNKDVVEQMEKCIQEKDEkLRTVEELLETgLIQVATREEEL 768
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAV-LIGVEAAYEA-ALEAALAAALQ 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 769 SAIRTENSTLTREVQELKAKQSDQVSFVSLIEDLKRVIHEKDgqIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQNL 848
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAA--LARGAIGAAVDLVASDLREADARYYVLGDTLLGRTL 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 849 LRGKEEQVNSMKAALEDRDRDLRGRGTcAQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENK 928
Cdd:COG1196 628 VAARLEAALRRAVTLAGRLREVTLEGE-GGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEE 706
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 1907099791 929 FLKCQLSHQKHQQASFPSQEELQTVISEKEKEITDLCNELESLKNAVE 976
Cdd:COG1196 707 RELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALE 754
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
410-964 |
4.96e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.28 E-value: 4.96e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 410 KFQQVQEQMEAEIAHLKQENGILRDAVSNTTNQLESKQSA--ELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAT 487
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLEleELELELEEAQAEEYELLAELARLEQDIARLEERRRELE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 488 QLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKE 567
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 568 ESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNmn 647
Cdd:COG1196 396 AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA-- 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 648 fLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASkmEELKILSEQNKALQSEVQKLQTAVSQQ 727
Cdd:COG1196 474 -LLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA--GAVAVLIGVEAAYEAALEAALAAALQN 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 728 PNKDVVEQMEKCIQE-KDEKLRTVEELLetgLIQVATREEELSAIRTENSTLTREVQELKAKQSDQVSFVSLIEDLKRVI 806
Cdd:COG1196 551 IVVEDDEVAAAAIEYlKAAKAGRATFLP---LDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTL 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 807 HEKDGQIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQVcstpqfE 886
Cdd:COG1196 628 VAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALL------A 701
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907099791 887 ELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQASFPSQEELQTVISEKEKEITDL 964
Cdd:COG1196 702 EEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
483-1221 |
8.31e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.17 E-value: 8.31e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 483 EQAA--TQLKVQLQEAERRWEEVQSYI---------RKRTAEHEAAQQDLQSKFVAKENEVQSLHskLTDTLVSKQQLEQ 551
Cdd:TIGR02168 162 EEAAgiSKYKERRKETERKLERTRENLdrledilneLERQLKSLERQAEKAERYKELKAELRELE--LALLVLRLEELRE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 552 RLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLKQTEDSLANEQD 631
Cdd:TIGR02168 240 ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKE---LYALANEISRLEQQKQILRERLANLER 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 632 HLASKEEELKDVQNMNFLLKAEVQKLQA----LANEQAATAHEVEKMQKSIHVKEDKIRLLEE----------QLQHEVA 697
Cdd:TIGR02168 317 QLEELEAQLEELESKLDELAEELAELEEkleeLKEELESLEAELEELEAELEELESRLEELEEqletlrskvaQLELQIA 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 698 SKMEELKILSEQNKALQSEVQKLQTAVSQQPNKDVVEQMEKCIQEKDEKLRTVEELLEtgliQVATREEELSAIRTENST 777
Cdd:TIGR02168 397 SLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQE----ELERLEEALEELREELEE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 778 LTREVQELKAKQSDQVSFVSLIEDLKRvihekdgqiksveelLEVELLKVANKEKTVQLSVTSQVQELQNLLRGKEEQVN 857
Cdd:TIGR02168 473 AEQALDAAERELAQLQARLDSLERLQE---------------NLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEA 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 858 SMKAALEDRdrdlrgrgtcaqvcstpqfeeLESVLKEKDNEIKRIEVKLKdtESDVSKMSELLKEVQEENKFLKCQLSHQ 937
Cdd:TIGR02168 538 AIEAALGGR---------------------LQAVVVENLNAAKKAIAFLK--QNELGRVTFLPLDSIKGTEIQGNDREIL 594
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 938 KHQQASFPSQEELQTVISEKEKEITDLCNEL---ESLKNAVEHQRKknnerrqhveaieleskdlLKRLFPTVSVPSNLN 1014
Cdd:TIGR02168 595 KNIEGFLGVAKDLVKFDPKLRKALSYLLGGVlvvDDLDNALELAKK-------------------LRPGYRIVTLDGDLV 655
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1015 YSEWLrgfekkakacVAGTSDAEAVKVLEHR--LKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKIKA 1092
Cdd:TIGR02168 656 RPGGV----------ITGGSAKTNSSILERRreIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1093 DESQRMIKQMQSSFTASERELERLRQENKDMENLRREREHLEMELEKAEMERStyvmevrELKDLLTELQKKLDDSYSEA 1172
Cdd:TIGR02168 726 RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA-------EAEAEIEELEAQIEQLKEEL 798
|
730 740 750 760
....*....|....*....|....*....|....*....|....*....
gi 1907099791 1173 VRQNEELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQQSLNSIHSKI 1221
Cdd:TIGR02168 799 KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQI 847
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
461-792 |
8.74e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.97 E-value: 8.74e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 461 LVSELNEKTGKLQQEgvqkknAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQskfvAKENEVQSLHSKLT 540
Cdd:COG1196 194 ILGELERQLEPLERQ------AEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELE----ELEAELEELEAELA 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 541 DTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLK 620
Cdd:COG1196 264 ELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE---LAELEEELEELEEELE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 621 QTEDSLANEQDHLASKEEELKDVQNmnfLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASKM 700
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAEE---ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 701 EELKILSEQNKALQSEVQKLQTAVSQQpnkdvveqmekciQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTR 780
Cdd:COG1196 418 RLEEELEELEEALAELEEEEEEEEEAL-------------EEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLE 484
|
330
....*....|..
gi 1907099791 781 EVQELKAKQSDQ 792
Cdd:COG1196 485 ELAEAAARLLLL 496
|
|
| Rib_recp_KP_reg |
pfam05104 |
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
29-151 |
1.31e-10 |
|
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.
Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 60.52 E-value: 1.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 29 MKETLYDEVLAKQKREQKLISTKTDKKKAEKKKNKKK------EIQNGTLRESD----SEHVPRDFKLSDASPAEDEqfV 98
Cdd:pfam05104 1 MKETSYEEALAKQRRELKKTPTEKEKKKKEKKKEKKKkskkkeEKPNGKLPESEqadeSEEEPREFKTPDEAPSAAL--E 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1907099791 99 PAPLNVAETSSSVRERKKKEKKQKPSLEEQVIKESDASKIPGKKVEPVLVTKQ 151
Cdd:pfam05104 79 PEPVPTPVPAPVEPEPAPPSESPAPSPKEKKKKEKKSAKVEPAETPEAVQPKP 131
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
479-998 |
1.98e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.47 E-value: 1.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 479 KKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSkltdtlvSKQQLEQRLMQLME 558
Cdd:PTZ00121 1236 KKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADE-------AKKAEEKKKADEAK 1308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 559 SEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEE 638
Cdd:PTZ00121 1309 KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE 1388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 639 ELKDVQNMNflLKAEVQKLQA-----------LANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASKMEELKILS 707
Cdd:PTZ00121 1389 EKKKADEAK--KKAEEDKKKAdelkkaaaakkKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKA 1466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 708 EQNKALQSEVQKLQTAVSQQPNKDVVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEEL-SAIRTENSTLTREVQEL- 785
Cdd:PTZ00121 1467 EEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAkKAEEAKKADEAKKAEEKk 1546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 786 KAKQSDQVSFVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQNLLRGKEEQVNSMKAALED 865
Cdd:PTZ00121 1547 KADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK 1626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 866 RDRDLRGRGTCAQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKflKCQLSHQKHQQASfp 945
Cdd:PTZ00121 1627 KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK--AAEALKKEAEEAK-- 1702
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 1907099791 946 SQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERRQHVEAIELESKD 998
Cdd:PTZ00121 1703 KAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEE 1755
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
311-944 |
6.87e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 6.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 311 LKEKSGVIKEALKKSNKgELSGLLHQLQEKERLLSAMKEDAAASKERCKQLTQEMMTEKER---SSVVIARMKDRIGTLE 387
Cdd:TIGR02168 300 LEQQKQILRERLANLER-QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEleeLEAELEELESRLEELE 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 388 KEHNIFQNKMHASYQETQQMQMKfqqvQEQMEAEIAHLKQENGILRdavSNTTNQLESKQSAELNKLRQDCGRLVSELNE 467
Cdd:TIGR02168 379 EQLETLRSKVAQLELQIASLNNE----IERLEARLERLEDRRERLQ---QEIEELLKKLEEAELKELQAELEELEEELEE 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 468 KTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSyirkRTAEHEAAQQDLQSKFVAKENEVQSLhSKLTDTLvskq 547
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQA----RLDSLERLQENLEGFSEGVKALLKNQ-SGLSGIL---- 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 548 qleQRLMQLMESEQK-RASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSA-SVLAEELHKVIAEKDKQLKQTEDS 625
Cdd:TIGR02168 523 ---GVLSELISVDEGyEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTfLPLDSIKGTEIQGNDREILKNIEG 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 626 LANEQDHLASKEEELKDVqnMNFLLK--AEVQKLQALANEQAATAHE--------------------VEKMQKSIHVKED 683
Cdd:TIGR02168 600 FLGVAKDLVKFDPKLRKA--LSYLLGgvLVVDDLDNALELAKKLRPGyrivtldgdlvrpggvitggSAKTNSSILERRR 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 684 KIRLLEEQ---LQHEVASKMEELKILSEQNKALQSEVQKLQTAVSQQPNKDVVEQME-KCIQEKDEKLRTVEELLETGLI 759
Cdd:TIGR02168 678 EIEELEEKieeLEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDlARLEAEVEQLEERIAQLSKELT 757
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 760 QVATREEELSAIRTENSTLTREVQELKAKQSDQVS-FVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQlSV 838
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEqLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA-AT 836
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 839 TSQVQELQNLLRGKEEQVNSMKAALEDRDRDLrgrgtcaqvcstpqfEELESVLKEKDNEIKRIEVKLKDTESDVSKMSE 918
Cdd:TIGR02168 837 ERRLEDLEEQIEELSEDIESLAAEIEELEELI---------------EELESELEALLNERASLEEALALLRSELEELSE 901
|
650 660
....*....|....*....|....*.
gi 1907099791 919 LLKEVQEENKFLKCQLSHQKHQQASF 944
Cdd:TIGR02168 902 ELRELESKRSELRRELEELREKLAQL 927
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
547-1166 |
7.44e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.34 E-value: 7.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 547 QQLEQRLMQLmESEQKRASKEESLQIQVQDIleQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLKQTEDSL 626
Cdd:COG1196 196 GELERQLEPL-ERQAEKAERYRELKEELKEL--EAELLLLKLRELEAELEELEAE---LEELEAELEELEAELAELEAEL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 627 ANEQDHLASKEEELKDVQNMNFLLKAEVQKLQA----LANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASKMEE 702
Cdd:COG1196 270 EELRLELEELELELEEAQAEEYELLAELARLEQdiarLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEA 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 703 LKILSEQNKALQSEVQKLQTAVsqqpnkdvvEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTREV 782
Cdd:COG1196 350 EEELEEAEAELAEAEEALLEAE---------AELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 783 QELKAKQSDQVSFVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKtvqlsVTSQVQELQNLLRGKEEQVNSMKAA 862
Cdd:COG1196 421 EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE-----EAALLEAALAELLEELAEAAARLLL 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 863 LEDRDRDLRGrgtcaqvcstpqfeELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEEnkflkcqlshQKHQQA 942
Cdd:COG1196 496 LLEAEADYEG--------------FLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALA----------AALQNI 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 943 SFPSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERRQHVEAIELESKDLLKRLFPTVSVPSNLNYSEWLRGF 1022
Cdd:COG1196 552 VVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1023 EKKAKACVAGTSDAEAVKVLEHRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKIKADESQRMIKQM 1102
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE 711
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907099791 1103 QSSFTASERELERLRQENKDMENLRREREHLEME--LEKAEMERSTYVMEVRELKDLLTELQKKLD 1166
Cdd:COG1196 712 AEEERLEEELEEEALEEQLEAEREELLEELLEEEelLEEEALEELPEPPDLEELERELERLEREIE 777
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
419-1001 |
1.22e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 59.26 E-value: 1.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 419 EAEIAHLKQENGILRDAVSNTTNQLeSKQSAELNKLRQDCGRLVSELNEKTGklqqegvQKKNAEQAATQLKVQLQEAER 498
Cdd:TIGR04523 67 EEKINNSNNKIKILEQQIKDLNDKL-KKNKDKINKLNSDLSKINSEIKNDKE-------QKNKLEVELNKLEKQKKENKK 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 499 RWEEVQSYIRKRTAEHEaaqqDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQ----------RLMQLMESEQKRASKEE 568
Cdd:TIGR04523 139 NIDKFLTEIKKKEKELE----KLNNKYNDLKKQKEELENELNLLEKEKLNIQKnidkiknkllKLELLLSNLKKKIQKNK 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 569 SLQIQVQDILEQNEALKAQIQQFHSQIaaqtsasvlaEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNF 648
Cdd:TIGR04523 215 SLESQISELKKQNNQLKDNIEKKQQEI----------NEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIK 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 649 LLKAEVQKLQA----LANEQAATAH-----EVEKMQKSIHVKEDKIRLLEE---QLQHEVASKMEELKILSEQNKALQSE 716
Cdd:TIGR04523 285 ELEKQLNQLKSeisdLNNQKEQDWNkelksELKNQEKKLEEIQNQISQNNKiisQLNEQISQLKKELTNSESENSEKQRE 364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 717 VQKLQTAVSQ-----QPNKDVVEQMEKCIQEKDEKLRTVEElletgliQVATREEELSAIRTENSTLTREVQELKAKQSD 791
Cdd:TIGR04523 365 LEEKQNEIEKlkkenQSYKQEIKNLESQINDLESKIQNQEK-------LNQQKDEQIKKLQQEKELLEKEIERLKETIIK 437
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 792 QVSfvsLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQNLLRGKEE--QVNSMKAALEDRDRD 869
Cdd:TIGR04523 438 NNS---EIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKElkKLNEEKKELEEKVKD 514
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 870 LRGRgtcaQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKmSELLKEVQEENKflkcQLSHQKHQQASF-PSQE 948
Cdd:TIGR04523 515 LTKK----ISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKK-ENLEKEIDEKNK----EIEELKQTQKSLkKKQE 585
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 1907099791 949 ELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERRQHVEAIELESKDLLK 1001
Cdd:TIGR04523 586 EKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKS 638
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
329-831 |
2.26e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 2.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 329 ELSGLLHQLQEKERLLSAMKEDAAASKERCKQLTQEMMTEKERssvvIARMKDRIGTLEKEHnifqnkmhasyQETQQMQ 408
Cdd:COG1196 268 ELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER----RRELEERLEELEEEL-----------AELEEEL 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 409 MKFQQVQEQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQdcgrlvselnektgkLQQEGVQKKNAEQAATQ 488
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE---------------LEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 489 LKVQLQEAERRWEEvqsyIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEE 568
Cdd:COG1196 398 LAAQLEELEEAEEA----LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 569 SLQIQVQDILEQNEALKAQIQQFHSQIA--AQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEE-LKDVQN 645
Cdd:COG1196 474 LLEAALAELLEELAEAAARLLLLLEAEAdyEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAaLQNIVV 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 646 MNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASkmeELKILSEQNKALQSEVqkLQTAVS 725
Cdd:COG1196 554 EDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVAS---DLREADARYYVLGDTL--LGRTLV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 726 QQPNKDVVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQELKAKQSDQVSFVSLIEDLKRV 805
Cdd:COG1196 629 AARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708
|
490 500
....*....|....*....|....*.
gi 1907099791 806 IHEKDGQIKSVEELLEVELLKVANKE 831
Cdd:COG1196 709 LAEAEEERLEEELEEEALEEQLEAER 734
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
353-1129 |
2.94e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 58.44 E-value: 2.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 353 ASKERCKQLTQEMmTEKERSSVVIARMKDRIGTLEKEHNIFQNKMHASYQETQQMQMKFQQVQEQMEAEIAHLKQENGIL 432
Cdd:TIGR00618 160 AKSKEKKELLMNL-FPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQT 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 433 RDAVSNTTNQLESKQSAElnKLRQDCGRLVSELNEKTGKLqqegvqkknAEQAATQLKVQLQEAERRWEEVQSYIRKRTA 512
Cdd:TIGR00618 239 QQSHAYLTQKREAQEEQL--KKQQLLKQLRARIEELRAQE---------AVLEETQERINRARKAAPLAAHIKAVTQIEQ 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 513 EHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQleQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFH 592
Cdd:TIGR00618 308 QAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQ--RRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQ 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 593 SQIAAQTSAS-VLAEELHKVIAEKDKQLKQTEdSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLqalANEQAATAHEV 671
Cdd:TIGR00618 386 QQKTTLTQKLqSLCKELDILQREQATIDTRTS-AFRDLQGQLAHAKKQQELQQRYAELCAAAITCT---AQCEKLEKIHL 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 672 EKMQKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQN-------KALQSEVQKLQTAVSQQPNKDVVEQMEKCIQEKD 744
Cdd:TIGR00618 462 QESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQeepcplcGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLE 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 745 EKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQELKAkqsdqvSFVSLIEDLKRVIHEKDGQIKSVEELLEvel 824
Cdd:TIGR00618 542 TSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKE------DIPNLQNITVRLQDLTEKLSEAEDMLAC--- 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 825 lkvANKEKTVQLSVTSQVQELQNLLRGKEEQVNSMKAALEdrdrdlrgrGTCAQVCSTPQFEELESVLKEKDNEIKRIEV 904
Cdd:TIGR00618 613 ---EQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALH---------ALQLTLTQERVREHALSIRVLPKELLASRQL 680
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 905 KLKDTESDVSKMSELLKEVQEENKFLKCQLshqkhqqasfpsqeelqTVISEKEKEITDLCNELESLKNAVEHQRKKNNE 984
Cdd:TIGR00618 681 ALQKMQSEKEQLTYWKEMLAQCQTLLRELE-----------------THIEEYDREFNEIENASSSLGSDLAAREDALNQ 743
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 985 RRQHveaieleskdlLKRLFPTVSVPSNLNYSewlRGFEKKAKACVAGTSDAEAVKVLEHRLKEASEMHTLLQLECEKYK 1064
Cdd:TIGR00618 744 SLKE-----------LMHQARTVLKARTEAHF---NNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIG 809
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907099791 1065 SVLAETEGILQKLQRSVEQEESKWKIKADE---SQRMIKQMQSSFTASERELERLRQENKDMENLRRE 1129
Cdd:TIGR00618 810 QEIPSDEDILNLQCETLVQEEEQFLSRLEEksaTLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDK 877
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
507-785 |
5.95e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 5.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 507 IRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKA 586
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 587 QIQQFHSQIAaqtSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKD-----------VQNMNFLLKAEVQ 655
Cdd:TIGR02168 762 EIEELEERLE---EAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLlneeaanlrerLESLERRIAATER 838
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 656 KLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQH-----------------EVASKMEELKILSEQNKALQSEVQ 718
Cdd:TIGR02168 839 RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAllnerasleealallrsELEELSEELRELESKRSELRRELE 918
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907099791 719 KLQTAVSQQPNKdvVEQMEKCIQEKDEKLRTVEEL-LETGLIQVATREEELSAIRTENSTLTREVQEL 785
Cdd:TIGR02168 919 ELREKLAQLELR--LEGLEVRIDNLQERLSEEYSLtLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
387-1218 |
9.01e-08 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 56.98 E-value: 9.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 387 EKEHNIFQNKMHASYQET-QQMQMKFQQVQEQMEAEIAHLKQENGI---LRDAVSNTTNQLESKQ------SAELNKLRQ 456
Cdd:TIGR00606 173 QKFDEIFSATRYIKALETlRQVRQTQGQKVQEHQMELKYLKQYKEKaceIRDQITSKEAQLESSReivksyENELDPLKN 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 457 DCGRlVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQE--------AERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAK 528
Cdd:TIGR00606 253 RLKE-IEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELkmekvfqgTDEQLNDLYHNHQRTVREKERELVDCQRELEKL 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 529 ENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQ-DILEQNEALKAQIQQFHSQIAAQTS-----AS 602
Cdd:TIGR00606 332 NKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLElDGFERGPFSERQIKNFHTLVIERQEdeaktAA 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 603 VLAEELHKVIAEKDKQLKQTED-------SLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKMQ 675
Cdd:TIGR00606 412 QLCADLQSKERLKQEQADEIRDekkglgrTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAE 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 676 KS----------IHVKEDKIRLLE---------EQLQHEVASKMEELKILSEQNKALQS----EVQKLQTAVSQQPNKDV 732
Cdd:TIGR00606 492 KNsltetlkkevKSLQNEKADLDRklrkldqemEQLNHHTTTRTQMEMLTKDKMDKDEQirkiKSRHSDELTSLLGYFPN 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 733 VEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQELKAKQSDQVSFVSLIEDLKRvihekdgq 812
Cdd:TIGR00606 572 KKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLER-------- 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 813 IKSVEELLEVELLKVANKEKTVQLSVTSQVQELQNLLRgKEEQVNSMKAALEDRDRDLRGRGTCAqvcsTPQFEELESVL 892
Cdd:TIGR00606 644 LKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCP-VCQRVFQTEAELQEFISDLQSKLRLA----PDKLKSTESEL 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 893 KEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHqqaSFPSQEELQTVISEKEKEITDLCNELESLK 972
Cdd:TIGR00606 719 KKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKN---DIEEQETLLGTIMPEEESAKVCLTDVTIME 795
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 973 NAVEhqRKKNNERRQHVEAIELESKDLlkrlfptvsvpsNLNYSEWLRGFEKKAKACVAGTSDAEAVKVLehrLKEASEM 1052
Cdd:TIGR00606 796 RFQM--ELKDVERKIAQQAAKLQGSDL------------DRTVQQVNQEKQEKQHELDTVVSKIELNRKL---IQDQQEQ 858
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1053 HTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKiKADESQRMIKQMQSSFTASERELERLRQENKDMENLRREreh 1132
Cdd:TIGR00606 859 IQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELST-EVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKET--- 934
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1133 lemELEKAEMERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEelnllkTQLNETHSKLQNEQTERKKVADDLHKAQQ 1212
Cdd:TIGR00606 935 ---SNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKE------TELNTVNAQLEECEKHQEKINEDMRLMRQ 1005
|
....*.
gi 1907099791 1213 SLNSIH 1218
Cdd:TIGR00606 1006 DIDTQK 1011
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
461-1165 |
1.71e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 1.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 461 LVSELNEKTGKLQQEgvqkKNAEQAATQLKVQLQEAErrweevQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLT 540
Cdd:TIGR02169 192 IIDEKRQQLERLRRE----REKAERYQALLKEKREYE------GYELLKEKEALERQKEAIERQLASLEEELEKLTEEIS 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 541 DTLVSKQQLEQRLMQLmESEQKRASKEESLQIQvqdilEQNEALKAQIQQFHSQIAA-QTSASVLAEELHKVIAEKDKQL 619
Cdd:TIGR02169 262 ELEKRLEEIEQLLEEL-NKKIKDLGEEEQLRVK-----EKIGELEAEIASLERSIAEkERELEDAEERLAKLEAEIDKLL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 620 KQTEDSlaneqdhlaskEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASK 699
Cdd:TIGR02169 336 AEIEEL-----------EREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINEL 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 700 MEELKILSEQNKALQSEV----QKLQTAVSQQPN-KDVVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTE 774
Cdd:TIGR02169 405 KRELDRLQEELQRLSEELadlnAAIAGIEAKINElEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 775 NSTLTREVQELKAKQS-------DQVSFVSLIEDLKRVIHEKDGQ-IKSVEELLEVELLKVANKEKTVQLSVTSQVQELQ 846
Cdd:TIGR02169 485 LSKLQRELAEAEAQARaseervrGGRAVEEVLKASIQGVHGTVAQlGSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAI 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 847 NLLRGKEE------QVNSMKAALEDRDR----------------DLRGRGTCAQVC-STPQFEELESV------------ 891
Cdd:TIGR02169 565 ELLKRRKAgratflPLNKMRDERRDLSIlsedgvigfavdlvefDPKYEPAFKYVFgDTLVVEDIEAArrlmgkyrmvtl 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 892 ---LKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSH--------QKHQQASFPSQEELQTVISEKEKE 960
Cdd:TIGR02169 645 egeLFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSlqselrriENRLDELSQELSDASRKIGEIEKE 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 961 ITDLCNELESLKNAVEHQRKKNNERRQHVEAIELESKDLLKRLFPtvsvpsnlnysewlrgFEKKAKACVAGTSDAEAvK 1040
Cdd:TIGR02169 725 IEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEE----------------LEEDLHKLEEALNDLEA-R 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1041 VLEHRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESK----------WKIKADESQRMIKQMQSSFTASE 1110
Cdd:TIGR02169 788 LSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEiqelqeqridLKEQIKSIEKEIENLNGKKEELE 867
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*....
gi 1907099791 1111 RELERLRQENKDME----NLRREREHLEMELEKAEMERSTYVMEVRELKDLLTELQKKL 1165
Cdd:TIGR02169 868 EELEELEAALRDLEsrlgDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKL 926
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
309-801 |
1.91e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.41 E-value: 1.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 309 DLLKEKSGVIKEALKKSNKgeLSGLLHQLQEKERLLSAMKedaaASKERCKQLTQEMMTEKERSSVviarMKDRIGTLEK 388
Cdd:TIGR04523 170 ELENELNLLEKEKLNIQKN--IDKIKNKLLKLELLLSNLK----KKIQKNKSLESQISELKKQNNQ----LKDNIEKKQQ 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 389 EHNIFQNKMHASYQETQQMQMKFQQVQEQMEAEIAHLKQENGILRDaVSNTTNQLESKQSAELNKLRQDCGRLV-SELNE 467
Cdd:TIGR04523 240 EINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKE-LEKQLNQLKSEISDLNNQKEQDWNKELkSELKN 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 468 KTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKfvakENEVQSLHSKLTDTLVSKQ 547
Cdd:TIGR04523 319 QEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKL----KKENQSYKQEIKNLESQIN 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 548 QLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIA----AQTSASVLAEELHKVIAEKDKQLKQTE 623
Cdd:TIGR04523 395 DLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKdltnQDSVKELIIKNLDNTRESLETQLKVLS 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 624 DSLANEQDHLASKEEELKDVQNMNFLLKAEV----QKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEqlqhEVASK 699
Cdd:TIGR04523 475 RSINKIKQNLEQKQKELKSKEKELKKLNEEKkeleEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLED----ELNKD 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 700 MEELK--ILSEQNKALQSEVQKLQTAVSQQPNKDvvEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENST 777
Cdd:TIGR04523 551 DFELKkeNLEKEIDEKNKEIEELKQTQKSLKKKQ--EEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEK 628
|
490 500
....*....|....*....|....
gi 1907099791 778 LTREVQELKAKQSDQVSFVSLIED 801
Cdd:TIGR04523 629 LSSIIKNIKSKKNKLKQEVKQIKE 652
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
594-1203 |
3.88e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.76 E-value: 3.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 594 QIAAQTSASVLAEELHKVI-AEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVE 672
Cdd:PTZ00121 1167 EEARKAEDAKKAEAARKAEeVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAE 1246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 673 KMQKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQ----------SEVQKLQTAVSQQPNKDVVEQMEKCIQE 742
Cdd:PTZ00121 1247 EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEkkkadeakkaEEKKKADEAKKKAEEAKKADEAKKKAEE 1326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 743 KDEKLRTVEELLETG--LIQVATREEELSAIRTENSTLTREVQELKAKQSDQVSfvsliEDLKRVIHEK----DGQIKSV 816
Cdd:PTZ00121 1327 AKKKADAAKKKAEEAkkAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKA-----DAAKKKAEEKkkadEAKKKAE 1401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 817 EELLEVELLKVANKEKTVQLSVTSQVQELQNLLRGKEEQVNSMKAalEDRDRDLRGRGTCAQVCSTPQFEELESVLKEKD 896
Cdd:PTZ00121 1402 EDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKA--DEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKA 1479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 897 NEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQASFPSQEELQTVISEKEKEITDLCNEL---ESLKN 973
Cdd:PTZ00121 1480 EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELkkaEELKK 1559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 974 AVEHQRKKNNERRQHVEAIELESKDLLKRLFPTVSVPSNLNYSEWLRGFEKKAKACVAGTSDAEAVKVLEHRLKEASEMH 1053
Cdd:PTZ00121 1560 AEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLK 1639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1054 TLLQLECEKYKSVLAETEGILQKLQRSVEQEESKwKIKADEsqrmIKQMQSSFTASERELERLRQENKDMENLRREREHL 1133
Cdd:PTZ00121 1640 KKEAEEKKKAEELKKAEEENKIKAAEEAKKAEED-KKKAEE----AKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEE 1714
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1134 EMELEKAEMERSTYVMEVRELKDLLTELQKKLDdsysEAVRQNEELNLLKTQLNETHSKLQNEQTERKKV 1203
Cdd:PTZ00121 1715 KKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE----EAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV 1780
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
370-756 |
8.55e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 8.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 370 ERSSVVIARmKDRIGTLEKEhnifQNKMHASYQETQQMQMKFQQVQEQMEAEIAHLKQENGILRDAVSNTTNQLEsKQSA 449
Cdd:TIGR02168 667 KTNSSILER-RREIEELEEK----IEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLA-RLEA 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 450 ELNKLRQDCGRLVSELNEKTG-------KLQQEGVQKKNAEQAATQLKVQLQEAERRWEEvqsyIRKRTAEHEAAQQDLQ 522
Cdd:TIGR02168 741 EVEQLEERIAQLSKELTELEAeieeleeRLEEAEEELAEAEAEIEELEAQIEQLKEELKA----LREALDELRAELTLLN 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 523 SKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSAs 602
Cdd:TIGR02168 817 EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE- 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 603 vlAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMnfllkaEVQKLQALANEQAATAHEVEKMQKSIHVKE 682
Cdd:TIGR02168 896 --LEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR------IDNLQERLSEEYSLTLEEAEALENKIEDDE 967
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 683 DKIRLLEEQLQHEVAS-------KMEELKILSEQNKALQSEVQKLQTAvsqqpnkdvVEQMEKCIQEKDEklRTVEELLE 755
Cdd:TIGR02168 968 EEARRRLKRLENKIKElgpvnlaAIEEYEELKERYDFLTAQKEDLTEA---------KETLEEAIEEIDR--EARERFKD 1036
|
.
gi 1907099791 756 T 756
Cdd:TIGR02168 1037 T 1037
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
668-970 |
1.84e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 1.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 668 AHEVEKMQKSIHVKEDKIRLLEeQLQHEVASKMEELkilSEQNKALQSEVQKLQTavSQQPNKDVVEQMEKCIQEKDEKL 747
Cdd:TIGR02169 680 RERLEGLKRELSSLQSELRRIE-NRLDELSQELSDA---SRKIGEIEKEIEQLEQ--EEEKLKERLEELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 748 RTVEELLETGLIQVATREEELSAIRTENSTLTREVQELKAKQSDQvsfvsLIEDLKRVIHEKDGQIKSVEELLevellkv 827
Cdd:TIGR02169 754 ENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQA-----ELSKLEEEVSRIEARLREIEQKL------- 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 828 aNKEKTVQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLrgrgtcaqvcstpqfEELESVLKEKDNEIKRIEVKLK 907
Cdd:TIGR02169 822 -NRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKK---------------EELEEELEELEAALRDLESRLG 885
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907099791 908 DTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQAsfpSQEELQTVISEKEKEITDLCNELES 970
Cdd:TIGR02169 886 DLKKERDELEAQLRELERKIEELEAQIEKKRKRLS---ELKAKLEALEEELSEIEDPKGEDEE 945
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
606-1214 |
2.62e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.99 E-value: 2.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 606 EELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVqnmnfllKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKI 685
Cdd:PRK03918 189 ENIEELIKEKEKELEEVLREINEISSELPELREELEKL-------EKEVKELEELKEEIEELEKELESLEGSKRKLEEKI 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 686 RLLEEQLQhEVASKMEELKILSEQNKALQSEVQKLQTAVSQQPN-KDVVEQMEKCIQEKDEKLRTVEELLEtgliQVATR 764
Cdd:PRK03918 262 RELEERIE-ELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEyLDELREIEKRLSRLEEEINGIEERIK----ELEEK 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 765 EEELSAIRTENSTLTREVQELKakqsdqvSFVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQLSVTSQVQE 844
Cdd:PRK03918 337 EERLEELKKKLKELEKRLEELE-------ERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISK 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 845 LQNLLRGKEEQVNSMKAALEDRDRdlrGRGTCAqVCSTPQFEELESVLKEK-DNEIKRIEVKLKDTESdvsKMSELLKEV 923
Cdd:PRK03918 410 ITARIGELKKEIKELKKAIEELKK---AKGKCP-VCGRELTEEHRKELLEEyTAELKRIEKELKEIEE---KERKLRKEL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 924 QEENKFLKcqlshqkhqqasfpsqeelqtviseKEKEITDLCNELESLKNAVEHQRKKNNErrqhveaiELESKdllKRL 1003
Cdd:PRK03918 483 RELEKVLK-------------------------KESELIKLKELAEQLKELEEKLKKYNLE--------ELEKK---AEE 526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1004 FPTVSvpsnlnysEWLRGFEKKakacvagtsdaeaVKVLEHRLKEASEmhtllqlecekYKSVLAETEGILQKLQRSVEQ 1083
Cdd:PRK03918 527 YEKLK--------EKLIKLKGE-------------IKSLKKELEKLEE-----------LKKKLAELEKKLDELEEELAE 574
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1084 EESKWKIKADESQRMIKQMQSSFTASERELERLRQENKDMENLRREREHLEMELEKAEMERSTYVMEVRELKDLLTELQK 1163
Cdd:PRK03918 575 LLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEK 654
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907099791 1164 KLDDSYSEAVR---------------QNEELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQQSL 1214
Cdd:PRK03918 655 KYSEEEYEELReeylelsrelaglraELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKAL 720
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
445-926 |
2.73e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.94 E-value: 2.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 445 SKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTaEHEAAQQDLQSK 524
Cdd:TIGR04523 148 KKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNK-SLESQISELKKQ 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 525 FVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAA--QTSAS 602
Cdd:TIGR04523 227 NNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDlnNQKEQ 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 603 VLAEELHKVIAEKDKQLKQTEDSLANEQ-------DHLASKEEELKDVQNMNFLLKAEV----QKLQALANEQAATAHEV 671
Cdd:TIGR04523 307 DWNKELKSELKNQEKKLEEIQNQISQNNkiisqlnEQISQLKKELTNSESENSEKQRELeekqNEIEKLKKENQSYKQEI 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 672 EKMQKSIHVKEDKIRLLEE---QLQHEVASKMEELKILSEQNKALQSEVQKLQTAVSQQPNKDVV------------EQM 736
Cdd:TIGR04523 387 KNLESQINDLESKIQNQEKlnqQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVkeliiknldntrESL 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 737 EKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQELKAKQSdqvSFVSLIEDLKRVIHEKDGQIKSV 816
Cdd:TIGR04523 467 ETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKIS---SLKEKIEKLESEKKEKESKISDL 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 817 EELLEVELLKVAN----KEKTVQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRgtcaQVCSTPQFEELESVL 892
Cdd:TIGR04523 544 EDELNKDDFELKKenleKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKE----IEEKEKKISSLEKEL 619
|
490 500 510
....*....|....*....|....*....|....
gi 1907099791 893 KEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEE 926
Cdd:TIGR04523 620 EKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKET 653
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
456-1236 |
3.79e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.66 E-value: 3.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 456 QDCGRLVSELNEKTGKlqqegvQKKNAEQAATQLKVQLQEAERRwEEVQSYIRKRTAEheaAQQDLQSKFVAKENEVQSL 535
Cdd:pfam15921 88 KDLQRRLNESNELHEK------QKFYLRQSVIDLQTKLQEMQME-RDAMADIRRRESQ---SQEDLRNQLQNTVHELEAA 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 536 HSKLTDTLVSKQQLEQRLMQLMESEqkraskeESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSASvLAEELHKVIAEK 615
Cdd:pfam15921 158 KCLKEDMLEDSNTQIEQLRKMMLSH-------EGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRS-LGSAISKILREL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 616 DKQLKQTEDSLANEQDHLASKEEELKDvqNMNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIR----LLEEQ 691
Cdd:pfam15921 230 DTEISYLKGRIFPVEDQLEALKSESQN--KIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQsqleIIQEQ 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 692 LQHEVASKMEELKILSEQNKALQSEVQKlqtavSQQPNKDVVEQMEKCIQEKDEKL---RT-----------VEELLETG 757
Cdd:pfam15921 308 ARNQNSMYMRQLSDLESTVSQLRSELRE-----AKRMYEDKIEELEKQLVLANSELteaRTerdqfsqesgnLDDQLQKL 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 758 LIQVATREEELSAIRTENSTL-------TREVQELKAKQSDQVSFVSLIEDL-KRVIHEKDGQIKSVEELLEVELLKVAN 829
Cdd:pfam15921 383 LADLHKREKELSLEKEQNKRLwdrdtgnSITIDHLRRELDDRNMEVQRLEALlKAMKSECQGQMERQMAAIQGKNESLEK 462
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 830 KEktvqlSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLrgrgtcaqvcstpqfEELESVLKEKDNEIKRievklkdT 909
Cdd:pfam15921 463 VS-----SLTAQLESTKEMLRKVVEELTAKKMTLESSERTV---------------SDLTASLQEKERAIEA-------T 515
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 910 ESDVSKMSELLKEVQEENKFLKCQLSHQKHQQASFpsqEELQTVISEKEKEITDLCNELESLKNAV-EHQRKKNnerrqh 988
Cdd:pfam15921 516 NAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTEC---EALKLQMAEKDKVIEILRQQIENMTQLVgQHGRTAG------ 586
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 989 veAIELESKDLLKRLFPtvsvpsnlnysewlRGFEKKAKACVAGTSDAEaVKVLEHRLKEasemhtllqLECEKYKSVLA 1068
Cdd:pfam15921 587 --AMQVEKAQLEKEIND--------------RRLELQEFKILKDKKDAK-IRELEARVSD---------LELEKVKLVNA 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1069 ETEGIlqKLQRSVEQEEskwkikaDESQRMIKQMQSSFTASERELERLRQenkdmeNLRREREHLEMELEKAEMERSTYV 1148
Cdd:pfam15921 641 GSERL--RAVKDIKQER-------DQLLNEVKTSRNELNSLSEDYEVLKR------NFRNKSEEMETTTNKLKMQLKSAQ 705
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1149 MEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQ-------NEQTERKKVADDLHKAQQSLNSIHSKI 1221
Cdd:pfam15921 706 SELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQfleeamtNANKEKHFLKEEKNKLSQELSTVATEK 785
|
810
....*....|....*
gi 1907099791 1222 SlKAAGDTVVIENSD 1236
Cdd:pfam15921 786 N-KMAGELEVLRSQE 799
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
312-1003 |
3.81e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 3.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 312 KEKSGVIKEALKKSNKGELSGLLHQLQEKERLLSAMKEDAAASKERCKQLT---QEMMTEKERSSVVIARMKDRIGTL-E 387
Cdd:TIGR02169 207 REKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTeeiSELEKRLEEIEQLLEELNKKIKDLgE 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 388 KEHNIFQNKM---HASYQETQQMQMKFQQVQEQMEAEIAHLKQENGILRDAVSNTTNQLESKQsAELNKLRQDCGRLVSE 464
Cdd:TIGR02169 287 EEQLRVKEKIgelEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEER-KRRDKLTEEYAELKEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 465 LNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKrtaeheaaqqdLQSKFVAKENEVQSLHSKLTDTLV 544
Cdd:TIGR02169 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDR-----------LQEELQRLSEELADLNAAIAGIEA 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 545 SKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIaaqtsasvlaEELHKVIAEKDKQLKQTED 624
Cdd:TIGR02169 435 KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKEL----------SKLQRELAEAEAQARASEE 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 625 slanEQDHLASKEEELKDVQNMNFLLKAE---VQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQ-------- 693
Cdd:TIGR02169 505 ----RVRGGRAVEEVLKASIQGVHGTVAQlgsVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAgratflpl 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 694 HEVASKMEELKILSEqNKALQSEV------QKLQTAVSQQ-PNKDVVEQMEKCIQEKDE-KLRTVE-ELLE--------- 755
Cdd:TIGR02169 581 NKMRDERRDLSILSE-DGVIGFAVdlvefdPKYEPAFKYVfGDTLVVEDIEAARRLMGKyRMVTLEgELFEksgamtggs 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 756 ---TGLIQVATRE-EELSAIRTENSTLTREVQELKAKQSDQVSFV----SLIEDLKRVIHEKDGQIKSVEELLEVELLKV 827
Cdd:TIGR02169 660 rapRGGILFSRSEpAELQRLRERLEGLKRELSSLQSELRRIENRLdelsQELSDASRKIGEIEKEIEQLEQEEEKLKERL 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 828 ANKEKTVQ------LSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRgtcaqvcstpQFEELESVLKEKDNEIKR 901
Cdd:TIGR02169 740 EELEEDLSsleqeiENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHS----------RIPEIQAELSKLEEEVSR 809
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 902 IEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQASFPSQ--------EELQTVISEKEKEITDLCNELESLKN 973
Cdd:TIGR02169 810 IEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEienlngkkEELEEELEELEAALRDLESRLGDLKK 889
|
730 740 750
....*....|....*....|....*....|
gi 1907099791 974 AVEHQRKKNNERRQHVEAIELESKDLLKRL 1003
Cdd:TIGR02169 890 ERDELEAQLRELERKIEELEAQIEKKRKRL 919
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
884-1222 |
5.00e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 5.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 884 QFEELESVLKEKDNEIKRievkLKDTESDVSKMSELLKEVQEENKFLkcqLSHQKhqqasfpsqEELQTVISEKEKEITD 963
Cdd:TIGR02169 185 NIERLDLIIDEKRQQLER----LRREREKAERYQALLKEKREYEGYE---LLKEK---------EALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 964 LCNELESLKNAVEHQRKKNNERRQHVEAIELESKDLlkrlfptvSVPSNLNYSEWLRGFEKKAKACVAgtsdaeAVKVLE 1043
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDL--------GEEEQLRVKEKIGELEAEIASLER------SIAEKE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1044 HRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKIKADESQRMIKQMQSSFTASERELERLRQENKDM 1123
Cdd:TIGR02169 315 RELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKL 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1124 ENLRREREHLEMELEKaemerstyvmevreLKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQTERKKV 1203
Cdd:TIGR02169 395 EKLKREINELKRELDR--------------LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQL 460
|
330
....*....|....*....
gi 1907099791 1204 ADDLHKAQQSLNSIHSKIS 1222
Cdd:TIGR02169 461 AADLSKYEQELYDLKEEYD 479
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
445-687 |
8.53e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 8.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 445 SKQSAELNKLRQdcgrlvsELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQsk 524
Cdd:COG4942 23 AEAEAELEQLQQ-------EIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA-- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 525 fvAKENEVQSLHSKLTDTLVSKQQLEQ--RLMQLMESE--QKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTS 600
Cdd:COG4942 94 --ELRAELEAQKEELAELLRALYRLGRqpPLALLLSPEdfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 601 AsvlAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHV 680
Cdd:COG4942 172 E---RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGF 248
|
....*..
gi 1907099791 681 KEDKIRL 687
Cdd:COG4942 249 AALKGKL 255
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
473-712 |
1.06e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.02 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 473 QQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVakENEVQSLHSKLTDTLVSKQQLEQR 552
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLL--LQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 553 LMQLmesEQKRASKEESLQIQVQDILEQNeaLKAQIQQFHSQIAAQtsaSVLAEELHKVIAEKDKQLKQTEDSLANEQDH 632
Cdd:COG3206 242 LAAL---RAQLGSGPDALPELLQSPVIQQ--LRAQLAELEAELAEL---SARYTPNHPDVIALRAQIAALRAQLQQEAQR 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 633 LASKeeelkdvqnmnflLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQ------HEVASKMEELKIL 706
Cdd:COG3206 314 ILAS-------------LEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEvarelyESLLQRLEEARLA 380
|
....*.
gi 1907099791 707 SEQNKA 712
Cdd:COG3206 381 EALTVG 386
|
|
| Nucleoporin_FG2 |
pfam15967 |
Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of ... |
401-565 |
1.30e-05 |
|
Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of chordate nucleoporins. The proteins carry many repeats of the FG sequence motif.
Pssm-ID: 435043 [Multi-domain] Cd Length: 586 Bit Score: 49.28 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 401 YQETQQMQmKFQQVQEQMEAEI------AHLKQENGI--LRDAVSNTTNQLEsKQSAELNKLRQDCGRLV--SELNEKTG 470
Cdd:pfam15967 250 CQDVENFQ-KFVKEQKQVQEEIsrmsskAMLKVQDDIkaLKQLLSVAASGLQ-RNSLAIDKLKIETAQELknADIALRTQ 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 471 KlQQEGVQKKNAEQA------ATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQ-------SKFVAKENEVQSLHS 537
Cdd:pfam15967 328 K-TPPGLQHENTAPAdyfrslVEQFEVQLQQYRQQIEELENHLTTQSSSSHITPQDLSlamqklyQTFVALAAQLQSVHE 406
|
170 180 190
....*....|....*....|....*....|..
gi 1907099791 538 KLtdTLVSKQQLEQRLMQLMES----EQKRAS 565
Cdd:pfam15967 407 NV--KILKEQYLGYRKAFLEDStdvfEAKRAE 436
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
527-1143 |
1.73e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 49.31 E-value: 1.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 527 AKENEVQSLHSKLTDTLVSKQQLEQRLMqlMESEQKRASKEESLQIQVQDILEQNEALKAQIQQ---------FHSQIAA 597
Cdd:COG5022 814 SYLACIIKLQKTIKREKKLRETEEVEFS--LKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQrvelaerqlQELKIDV 891
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 598 QTSASV--LAEELHKVIAEKDKQLKQTE--------DSLANEQDHLasKEEELKDVQNMNFLLKAEVQKLQALANEQAAT 667
Cdd:COG5022 892 KSISSLklVNLELESEIIELKKSLSSDLienlefktELIARLKKLL--NNIDLEEGPSIEYVKLPELNKLHEVESKLKET 969
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 668 AHEVEKM--QKSIHVKEDKIRLLE-EQLQHEVASKMEELKILSEQNKAL---QSEVQKLQTAVSQQPNKDVVEQMEKCIQ 741
Cdd:COG5022 970 SEEYEDLlkKSTILVREGNKANSElKNFKKELAELSKQYGALQESTKQLkelPVEVAELQSASKIISSESTELSILKPLQ 1049
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 742 EKDEKLRTVEELLETGLIQVATREE--------ELSAIRTENSTLTREVQELKAKQSDQVSFVSLIEDLK------RVIH 807
Cdd:COG5022 1050 KLKGLLLLENNQLQARYKALKLRREnsllddkqLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFIVaqmiklNLLQ 1129
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 808 EKDGQIKSVEELLEVELLKVANKEKTvqLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQVcsTPQFEE 887
Cdd:COG5022 1130 EISKFLSQLVNTLEPVFQKLSVLQLE--LDGLFWEANLEALPSPPPFAALSEKRLYQSALYDEKSKLSSSEV--NDLKNE 1205
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 888 LESVLKeKDNEIKRIEVKLKDTESDVSKMSELLKEVQEEN---KFLKCQLSHQKHQQASFPSQeeLQTVISEKEKEitdl 964
Cdd:COG5022 1206 LIALFS-KIFSGWPRGDKLKKLISEGWVPTEYSTSLKGFNnlnKKFDTPASMSNEKLLSLLNS--IDNLLSSYKLE---- 1278
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 965 cnelESLKNAVEHQRKKNNERRQHVEAIELESKDLLKRLfptvsvpSNLNY-SEWLRGFEKKAKACVAGTS---DAEAVK 1040
Cdd:COG5022 1279 ----EEVLPATINSLLQYINVGLFNALRTKASSLRWKSA-------TEVNYnSEELDDWCREFEISDVDEEleeLIQAVK 1347
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1041 VLEHRLKEASEMHTLLQLeceKYKSVLAETEGILQKLQRSVEQEESKWKIKADESQRMIKQMQSSFTASERELERLRQEN 1120
Cdd:COG5022 1348 VLQLLKDDLNKLDELLDA---CYSLNPAEIQNLKSRYDPADKENNLPKEILKKIEALLIKQELQLSLEGKDETEVHLSEI 1424
|
650 660
....*....|....*....|....*
gi 1907099791 1121 KDMEN--LRREREHLEMELEKAEME 1143
Cdd:COG5022 1425 FSEEKslISLDRNSIYKEEVLSSLS 1449
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1038-1214 |
1.94e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 1.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1038 AVKVLEHRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKIKADESQRMIKQMQSSFTASERELERLR 1117
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1118 QENKDMENLRREREHLEMELEKAEMERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQ 1197
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170
....*....|....*..
gi 1907099791 1198 TERKKVADDLHKAQQSL 1214
Cdd:COG1196 393 RAAAELAAQLEELEEAE 409
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
352-806 |
2.37e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 48.90 E-value: 2.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 352 AASKERCKQLTQEMmteKERSSVVIARMKDRIGTLEKEHNiFQNKMHASYQETQQmqmkFQQVQEQMEAEIAHLKQENGI 431
Cdd:PRK10929 19 AATAPDEKQITQEL---EQAKAAKTPAQAEIVEALQSALN-WLEERKGSLERAKQ----YQQVIDNFPKLSAELRQQLNN 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 432 LRDAVSNttnqLESKQSAelNKLRQDCGRLVSELNEKTGKLQQEgvQKKNAE---------QAATQLKVQLQEAERRwee 502
Cdd:PRK10929 91 ERDEPRS----VPPNMST--DALEQEILQVSSQLLEKSRQAQQE--QDRAREisdslsqlpQQQTEARRQLNEIERR--- 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 503 VQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLhskltdtlvskqqleqrlmqlmESEQKRAS-KEESLQIQVQDILEQN 581
Cdd:PRK10929 160 LQTLGTPNTPLAQAQLTALQAESAALKALVDEL----------------------ELAQLSANnRQELARLRSELAKKRS 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 582 EALKAQIQQFHSQIAAQTSAsvlaeelhkviaEKDKQLKQTEdSLANEQDHL-ASKEEELKDVQNMNFLLKAEVQKLQAL 660
Cdd:PRK10929 218 QQLDAYLQALRNQLNSQRQR------------EAERALESTE-LLAEQSGDLpKSIVAQFKINRELSQALNQQAQRMDLI 284
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 661 ANEQAATAHEVEKMQKSIhvkeDKIR----------LLEEQLQHEVA------------SKMEELKILSEQNKALQSEVQ 718
Cdd:PRK10929 285 ASQQRQAASQTLQVRQAL----NTLReqsqwlgvsnALGEALRAQVArlpempkpqqldTEMAQLRVQRLRYEDLLNKQP 360
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 719 KLQTAvsQQPNKDVVEQMEKCIQekDEKLRTVEELLETGLIQVATREEELSAIRTENSTLT---REVQELKAK------Q 789
Cdd:PRK10929 361 QLRQI--RQADGQPLTAEQNRIL--DAQLRTQRELLNSLLSGGDTLILELTKLKVANSQLEdalKEVNEATHRylfwvaD 436
|
490 500
....*....|....*....|
gi 1907099791 790 SDQVSF---VSLIEDLKRVI 806
Cdd:PRK10929 437 VSPISLsypLEIAQDLRRLL 456
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1071-1191 |
2.49e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 48.70 E-value: 2.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1071 EGILQKL-QRSVEQEESKWKIKADESQRMIKQMQSSFTASERELERLRQENKDMEN----LRREREHLEMELEKAEMERS 1145
Cdd:COG2433 379 EEALEELiEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAeleeKDERIERLERELSEARSEER 458
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1907099791 1146 TYVMEVRELKDLLTE---LQKKLDDSYSEAVRQNEELNLLKTQLNETHS 1191
Cdd:COG2433 459 REIRKDREISRLDREierLERELEEERERIEELKRKLERLKELWKLEHS 507
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
734-1003 |
3.80e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 48.00 E-value: 3.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 734 EQMEK--CIQEKDEKLRTVEELLETGLIQVATREEELSAIRTEN-STLTREVQELKAKQSDQVSFVSLIEDLKRVIhekd 810
Cdd:PRK05771 4 VRMKKvlIVTLKSYKDEVLEALHELGVVHIEDLKEELSNERLRKlRSLLTKLSEALDKLRSYLPKLNPLREEKKKV---- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 811 gQIKSVEELLEVELLKVANKEKTVqLSVTSQVQELQNLLRGKEEQVNSMK--AALEDRDRDLRGRGTCAQVCST--PQFE 886
Cdd:PRK05771 80 -SVKSLEELIKDVEEELEKIEKEI-KELEEEISELENEIKELEQEIERLEpwGNFDLDLSLLLGFKYVSVFVGTvpEDKL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 887 ELESVLKEKDNEIKRIEVKLKDT------ESDVSKMSELLKEVQEENKflkcqlshqkhqqaSFPSQEELQTVISEKEKE 960
Cdd:PRK05771 158 EELKLESDVENVEYISTDKGYVYvvvvvlKELSDEVEEELKKLGFERL--------------ELEEEGTPSELIREIKEE 223
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1907099791 961 ITDLCNELESLKNAVEHQRKKNNERRQHVEA---IELESKDLLKRL 1003
Cdd:PRK05771 224 LEEIEKERESLLEELKELAKKYLEELLALYEyleIELERAEALSKF 269
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
471-814 |
3.96e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 47.97 E-value: 3.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 471 KLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLhsKLTDTLVSKQQLE 550
Cdd:PLN02939 64 KLQSNTDENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDF--QLEDLVGMIQNAE 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 551 QRLMQLmesEQKRASKEEslqiQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSL---- 626
Cdd:PLN02939 142 KNILLL---NQARLQALE----DLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELlirg 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 627 ANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLqheVASKMEELKIL 706
Cdd:PLN02939 215 ATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKF---IVAQEDVSKLS 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 707 SEQNKALQSEVQKLQTAVSQQPNKdvVEQMEKCIQEKDEkLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQELK 786
Cdd:PLN02939 292 PLQYDCWWEKVENLQDLLDRATNQ--VEKAALVLDQNQD-LRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQ 368
|
330 340
....*....|....*....|....*...
gi 1907099791 787 AKQSDQVSFVSLIEDLKRVIHEKDGQIK 814
Cdd:PLN02939 369 ASDHEIHSYIQLYQESIKEFQDTLSKLK 396
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
341-930 |
4.13e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.12 E-value: 4.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 341 ERLLSAMKEDAAASKER--CKQLTQEMMTEKERSSVVIARMKDRIgtLEKEHNIFQNKMHASYQETQQMQMKFQQVQEQM 418
Cdd:TIGR00606 319 RELVDCQRELEKLNKERrlLNQEKTELLVEQGRLQLQADRHQEHI--RARDSLIQSLATRLELDGFERGPFSERQIKNFH 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 419 EAEIAHLKQENGILRDAVSNTTNQLESKQSAeLNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAER 498
Cdd:TIGR00606 397 TLVIERQEDEAKTAAQLCADLQSKERLKQEQ-ADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILE 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 499 RWEEVqsyirkRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEeslqIQVQDIL 578
Cdd:TIGR00606 476 LDQEL------RKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQME----MLTKDKM 545
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 579 EQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKL- 657
Cdd:TIGR00606 546 DKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYe 625
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 658 ---------QALANEQAATAHEVEKMQKSIHVKEDKIRLLE---EQLQHEVASKMEELKILSEQNKALQSEVQKLQTAVS 725
Cdd:TIGR00606 626 dklfdvcgsQDEESDLERLKEEIEKSSKQRAMLAGATAVYSqfiTQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLR 705
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 726 QQPNKdvVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQELKAKQSDQVSFVSLI------ 799
Cdd:TIGR00606 706 LAPDK--LKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTImpeees 783
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 800 ------------------EDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQL-SVTSQVQELQNLLRGKEEQVNSMK 860
Cdd:TIGR00606 784 akvcltdvtimerfqmelKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELdTVVSKIELNRKLIQDQQEQIQHLK 863
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 861 AALEDRDRDLRGRGTCAQvcstpQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFL 930
Cdd:TIGR00606 864 SKTNELKSEKLQIGTNLQ-----RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEEL 928
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
427-786 |
4.27e-05 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 47.37 E-value: 4.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 427 QENGILRDAVSNTTNQLEskqsaELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERrweevqsy 506
Cdd:pfam19220 3 QRNELLRVRLGEMADRLE-----DLRSLKADFSQLIEPIEAILRELPQAKSRLLELEALLAQERAAYGKLRR-------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 507 irkrtaeheaaqqdlqskfvakenEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKA 586
Cdd:pfam19220 70 ------------------------ELAGLTRRLSAAEGELEELVARLAKLEAALREAEAAKEELRIELRDKTAQAEALER 125
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 587 QIQQFHSQIAAqtsasvLAEELhkviAEKDKQLKQTEDSLAneqdhlaSKEEELKDVQNMNFLLKAEVQKLQALANEQAA 666
Cdd:pfam19220 126 QLAAETEQNRA------LEEEN----KALREEAQAAEKALQ-------RAEGELATARERLALLEQENRRLQALSEEQAA 188
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 667 TAHEVEK----MQKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQSEV----QKLQTAVSQQPNKDVV-EQME 737
Cdd:pfam19220 189 ELAELTRrlaeLETQLDATRARLRALEGQLAAEQAERERAEAQLEEAVEAHRAERaslrMKLEALTARAAATEQLlAEAR 268
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1907099791 738 KCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQELK 786
Cdd:pfam19220 269 NQLRDRDEAIRAAERRLKEASIERDTLERRLAGLEADLERRTQQFQEMQ 317
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
370-1151 |
4.43e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 4.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 370 ERSSVVIARMKDRIGTLEKEHNifqnkmHA-SYQETQQmqmkfqqvqEQMEAEIAHLKQENGILRDAVSNTTNQLESKQ- 447
Cdd:TIGR02169 187 ERLDLIIDEKRQQLERLRRERE------KAeRYQALLK---------EKREYEGYELLKEKEALERQKEAIERQLASLEe 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 448 -----SAELNKLRQDCGRLVSELNEKTGKLQQEG------VQKK---------NAEQAATQLKVQLQEAERRWEEVQSYI 507
Cdd:TIGR02169 252 eleklTEEISELEKRLEEIEQLLEELNKKIKDLGeeeqlrVKEKigeleaeiaSLERSIAEKERELEDAEERLAKLEAEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 508 RKRTAEHEAAQQDLQSKFVAKE---NEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEAL 584
Cdd:TIGR02169 332 DKLLAEIEELEREIEEERKRRDkltEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRL 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 585 KAQIQQFHSQIAaqtsasvlaeELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMnflLKAEVQKLQALANEQ 664
Cdd:TIGR02169 412 QEELQRLSEELA----------DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD---LSKYEQELYDLKEEY 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 665 AATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASKMeelkILSEQNKALQSEVQKL-----------QTAVSQQPNKDVV 733
Cdd:TIGR02169 479 DRVEKELSKLQRELAEAEAQARASEERVRGGRAVEE----VLKASIQGVHGTVAQLgsvgeryataiEVAAGNRLNNVVV 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 734 EQ---MEKCIQ-EKDEKL---------------RTVEELLETGLIQVAT------REEELSAIRTENSTLTREVQELKAK 788
Cdd:TIGR02169 555 EDdavAKEAIElLKRRKAgratflplnkmrderRDLSILSEDGVIGFAVdlvefdPKYEPAFKYVFGDTLVVEDIEAARR 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 789 QSDQVSFVSLIEDLkrviHEKDGQIKSVEELLEVELLkVANKEKTVQLSVTSQVQELQNLL-------RGKEEQVNSMKA 861
Cdd:TIGR02169 635 LMGKYRMVTLEGEL----FEKSGAMTGGSRAPRGGIL-FSRSEPAELQRLRERLEGLKRELsslqselRRIENRLDELSQ 709
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 862 ALEDRDRDLRGRGTCAQVC------STPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLS 935
Cdd:TIGR02169 710 ELSDASRKIGEIEKEIEQLeqeeekLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS 789
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 936 HQKHQQASFPSQE------ELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERRQHVEAIELESKDLLKRLFPTVSV 1009
Cdd:TIGR02169 790 HSRIPEIQAELSKleeevsRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEE 869
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1010 PSNLNYSewLRGFEKKAKACVAGTSDAEA-VKVLEHRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSV--EQEES 1086
Cdd:TIGR02169 870 LEELEAA--LRDLESRLGDLKKERDELEAqLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKgeDEEIP 947
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907099791 1087 KWKIKADESQRMIKQMQSSFTA-----------SERELERLRQENKDMENLRREREHLEMELEKAEMERSTYVMEV 1151
Cdd:TIGR02169 948 EEELSLEDVQAELQRVEEEIRAlepvnmlaiqeYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEA 1023
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
399-603 |
5.02e-05 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 46.67 E-value: 5.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 399 ASYQETQQMQMKFQQVQEQMEAEIAHLKQENGiLRDAVSNTTNQLESKQS--------AELNKLRQDCGRLVSELNEKTG 470
Cdd:pfam09787 4 SAKQELADYKQKAARILQSKEKLIASLKEGSG-VEGLDSSTALTLELEELrqerdllrEEIQKLRGQIQQLRTELQELEA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 471 KLQQEGVQkknAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDL-------QSKFVAKENEVQSLHSKLTD-- 541
Cdd:pfam09787 83 QQQEEAES---SREQLQELEEQLATERSARREAEAELERLQEELRYLEEELrrskatlQSRIKDREAEIEKLRNQLTSks 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907099791 542 -TLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSASV 603
Cdd:pfam09787 160 qSSSSQSELENRLHQLTETLIQKQTMLEALSTEKNSLVLQLERMEQQIKELQGEGSNGTSINM 222
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
482-712 |
5.08e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 5.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 482 AEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQskfvAKENEVQSLHSKLTDTLVSKQQLEQRLMQLmesEQ 561
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA----ALERRIAALARRIRALEQELAALEAELAEL---EK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 562 KRASKEESLQIQVQDILEQNEALKAQIQQ------FHSQIAAQTSASV-LAEELHKVIAEKDKQLKQTEDSLANEQDHLA 634
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQpplallLSPEDFLDAVRRLqYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907099791 635 SKEEELKDVQNMnflLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKA 712
Cdd:COG4942 171 AERAELEALLAE---LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1032-1216 |
5.12e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 5.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1032 GTSDAEAVKVLEHRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKwkIKADESQRMIkqmqssfTASER 1111
Cdd:COG4913 605 GFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDE--IDVASAEREI-------AELEA 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1112 ELERLRQENKDMENLRREREHLEMELEKAEMERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHS 1191
Cdd:COG4913 676 ELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERF 755
|
170 180
....*....|....*....|....*
gi 1907099791 1192 KLQNEQTERKKVADDLHKAQQSLNS 1216
Cdd:COG4913 756 AAALGDAVERELRENLEERIDALRA 780
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
612-1131 |
7.97e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 47.20 E-value: 7.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 612 IAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEqaataheVEKMQKSIHVKEDKIRLLEEQ 691
Cdd:PRK01156 199 LENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDM-------KNRYESEIKTAESDLSMELEK 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 692 LQHEVASKMEELKILSEQNKALQSEVQKLQTAVSQQPN-KDVVEQMEKCIQEKDEKLRTVEELletgliqvATREEELSA 770
Cdd:PRK01156 272 NNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENkKQILSNIDAEINKYHAIIKKLSVL--------QKDYNDYIK 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 771 IRTENSTLTREVQELKAKQSDQVSFVSLIEDLKRVIHEKDGQIKSVEELLEVELLKV---ANKEKTVQLSVTSQVQELQN 847
Cdd:PRK01156 344 KKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQeidPDAIKKELNEINVKLQDISS 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 848 LLRGKEEQVNSMKAALEDRDRD---LRGRGTCAQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQ 924
Cdd:PRK01156 424 KVSSLNQRIRALRENLDELSRNmemLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLK 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 925 EENKFLkcqlshqkhQQASFPSQEELQTVISEKEKEITDLCNELESLKNA-VEHQRKKNNERRQHVEAIELESKDLLKRL 1003
Cdd:PRK01156 504 KRKEYL---------ESEEINKSINEYNKIESARADLEDIKIKINELKDKhDKYEEIKNRYKSLKLEDLDSKRTSWLNAL 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1004 FPTVSVPSNLNYSEW------LRGFEKKAKACVAGTSDAEA------------VKVLEHRLKEASEMHTL---LQLECEK 1062
Cdd:PRK01156 575 AVISLIDIETNRSRSneikkqLNDLESRLQEIEIGFPDDKSyidksireieneANNLNNKYNEIQENKILiekLRGKIDN 654
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907099791 1063 YKSVLAETEGIlQKLQRSVEQEESKWKIKADESQRMIKQMQSSFTASERELERLRQENKDMENLRRERE 1131
Cdd:PRK01156 655 YKKQIAEIDSI-IPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDIN 722
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
495-976 |
9.65e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 9.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 495 EAERRWEEVQSYIRK-----RTAEHEAAQQDLQSKFVAKENEVQSLHSKLT--DTLVSKQQLE--QRLMQLMESEQKRAS 565
Cdd:COG4913 222 DTFEAADALVEHFDDlerahEALEDAREQIELLEPIRELAERYAAARERLAelEYLRAALRLWfaQRRLELLEAELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 566 KE-ESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVlaEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQ 644
Cdd:COG4913 302 AElARLEAELERLEARLDALREELDELEAQIRGNGGDRL--EQLEREIERLERELEERERRRARLEALLAALGLPLPASA 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 645 nmnfllkAEVQKLQALANEQAATAHEvekMQKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQSEVQKLQTAV 724
Cdd:COG4913 380 -------EEFAALRAEAAALLEALEE---ELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDAL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 725 SQQPNKD------VVEQMEkcIQEKDEK--------------------------LRTVEELLETGLIQ---VATREEELS 769
Cdd:COG4913 450 AEALGLDeaelpfVGELIE--VRPEEERwrgaiervlggfaltllvppehyaaaLRWVNRLHLRGRLVyerVRTGLPDPE 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 770 AIRTENSTLTRE-----------VQELKAKQSDQVSfVSLIEDLKRviHEK----DGQIKSVEELLEVELLKVA------ 828
Cdd:COG4913 528 RPRLDPDSLAGKldfkphpfrawLEAELGRRFDYVC-VDSPEELRR--HPRaitrAGQVKGNGTRHEKDDRRRIrsryvl 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 829 ---NKEKTVQLsvTSQVQELQNLLRGKEEQVnsmkAALEDRDRDLRGRGTCAQVCSTPQFEELEsvLKEKDNEIKRIEVK 905
Cdd:COG4913 605 gfdNRAKLAAL--EAELAELEEELAEAEERL----EALEAELDALQERREALQRLAEYSWDEID--VASAEREIAELEAE 676
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907099791 906 LKDTESDVSKMSELLKEVQEenkflkCQLSHQKHQQAsfpsQEELQTVISEKEKEITDLCNELESLKNAVE 976
Cdd:COG4913 677 LERLDASSDDLAALEEQLEE------LEAELEELEEE----LDELKGEIGRLEKELEQAEEELDELQDRLE 737
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
360-960 |
1.02e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.65 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 360 QLTQEMMTEKERSSVVIARMKDRIGTLEKEHnifQNKMHASYQetqQMQMKFQQVQEQMEAEIAHLKQENGILRDAVSNT 439
Cdd:pfam15921 224 KILRELDTEISYLKGRIFPVEDQLEALKSES---QNKIELLLQ---QHQDRIEQLISEHEVEITGLTEKASSARSQANSI 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 440 TNQLESKQSAELNKlRQDCGRLVSELnektgklqqegvqkknaEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQ 519
Cdd:pfam15921 298 QSQLEIIQEQARNQ-NSMYMRQLSDL-----------------ESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELT 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 520 DLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDI----------LEQNEA-LKAQI 588
Cdd:pfam15921 360 EARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLrrelddrnmeVQRLEAlLKAMK 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 589 QQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANeqaATA 668
Cdd:pfam15921 440 SECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIE---ATN 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 669 HEVEKMQKSIHVKEDKIRLLEEQLQH--EVASKMEELKI-LSEQNKA---LQSEVQKLQTAVSQQPNKDVVEQMEKCIQE 742
Cdd:pfam15921 517 AEITKLRSRVDLKLQELQHLKNEGDHlrNVQTECEALKLqMAEKDKVieiLRQQIENMTQLVGQHGRTAGAMQVEKAQLE 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 743 -------------------KDEKLRTVE------ELLETGLIQVATreEELSAIRTENSTLTREVQELKAKQSDQVSFVS 797
Cdd:pfam15921 597 keindrrlelqefkilkdkKDAKIRELEarvsdlELEKVKLVNAGS--ERLRAVKDIKQERDQLLNEVKTSRNELNSLSE 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 798 LIEDLKRVIHEKDGQIKSveellevellkVANKEKTVQLSVTSQVQELQNLLRGKE-EQVNSMKAALEDRDRDLRGRGTC 876
Cdd:pfam15921 675 DYEVLKRNFRNKSEEMET-----------TTNKLKMQLKSAQSELEQTRNTLKSMEgSDGHAMKVAMGMQKQITAKRGQI 743
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 877 AQVCSTPQF--EELESVLKEK---DNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQASFPSQ-EEL 950
Cdd:pfam15921 744 DALQSKIQFleEAMTNANKEKhflKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQfAEC 823
|
650
....*....|
gi 1907099791 951 QTVISEKEKE 960
Cdd:pfam15921 824 QDIIQRQEQE 833
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
433-792 |
1.28e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.57 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 433 RDAVSNTTNQLESKQSAELNKLrqdCGRLVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQsyirkrta 512
Cdd:PRK02224 186 RGSLDQLKAQIEEKEEKDLHER---LNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELE-------- 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 513 EHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEAL-------K 585
Cdd:PRK02224 255 TLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELrdrleecR 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 586 AQIQQFHSQI-AAQTSASVL---AEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDvqNMNFLLKAEVQK----- 656
Cdd:PRK02224 335 VAAQAHNEEAeSLREDADDLeerAEELREEAAELESELEEAREAVEDRREEIEELEEEIEE--LRERFGDAPVDLgnaed 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 657 -LQALANEQAATAHEVEKMQKSIHVKEDKIR----LLEEQLQHEVASKMEELKILS------EQNKALQSEVQKLQTAVS 725
Cdd:PRK02224 413 fLEELREERDELREREAELEATLRTARERVEeaeaLLEAGKCPECGQPVEGSPHVEtieedrERVEELEAELEDLEEEVE 492
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907099791 726 QQPNK-----DVVEQmEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQELKAKQSDQ 792
Cdd:PRK02224 493 EVEERleraeDLVEA-EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEA 563
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
415-656 |
1.44e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 46.37 E-value: 1.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 415 QEQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNK--------LRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAA 486
Cdd:NF012221 1564 KERAEADRQRLEQEKQQQLAAISGSQSQLESTDQNALETngqaqrdaILEESRAVTKELTTLAQGLDALDSQATYAGESG 1643
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 487 TQLKVQLqeAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKlTDTLVskQQLEQRLMQLMESEQKRASK 566
Cdd:NF012221 1644 DQWRNPF--AGGLLDRVQEQLDDAKKISGKQLADAKQRHVDNQQKVKDAVAK-SEAGV--AQGEQNQANAEQDIDDAKAD 1718
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 567 EESLQIQVqdILEQNEALKAQIQQFHS----QIAAQTSASVLAEELHKVIAEKdKQLKQTEDSLANEQ----DHLASKEE 638
Cdd:NF012221 1719 AEKRKDDA--LAKQNEAQQAESDANAAandaQSRGEQDASAAENKANQAQADA-KGAKQDESDKPNRQgaagSGLSGKAY 1795
|
250
....*....|....*...
gi 1907099791 639 ELKDVQNMNFLLKAEVQK 656
Cdd:NF012221 1796 SVEGVAEPGSHINPDSPA 1813
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
414-591 |
1.72e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 1.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 414 VQEQMEAEIAHLKQENGILRDAVSNTTNQLESKQsAELNKLRQDCGrlVSELNEKTGKLQQegvQKKNAEQAATQLKVQL 493
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAE-AALEEFRQKNG--LVDLSEEAKLLLQ---QLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 494 QEAERRWEEVQSYI-------------------RKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLM 554
Cdd:COG3206 236 AEAEARLAALRAQLgsgpdalpellqspviqqlRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRIL 315
|
170 180 190
....*....|....*....|....*....|....*..
gi 1907099791 555 QLMESEQkraskeESLQIQVQDILEQNEALKAQIQQF 591
Cdd:COG3206 316 ASLEAEL------EALQAREASLQAQLAQLEARLAEL 346
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
419-993 |
2.09e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.83 E-value: 2.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 419 EAEIAHLKQENGILRDAVSNTTNQLESKQ---SAELNKLRqdcgRLVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQE 495
Cdd:PRK03918 188 TENIEELIKEKEKELEEVLREINEISSELpelREELEKLE----KEVKELEELKEEIEELEKELESLEGSKRKLEEKIRE 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 496 AERRWEEVqsyiRKRTAEHEAAQQDLQS-KFVAKE-NEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQ 573
Cdd:PRK03918 264 LEERIEEL----KKEIEELEEKVKELKElKEKAEEyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEER 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 574 VQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKViaeKDKQLKQTEDSLANEQDHLASKEEELKDVQNMnflLKAE 653
Cdd:PRK03918 340 LEELKKKLKELEKRLEELEERHELYEEAKAKKEELERL---KKRLTGLTPEKLEKELEELEKAKEEIEEEISK---ITAR 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 654 VQKLQALANEQAATAHEVEKMQKSIHV------KEDKIRLLEEQLQhEVASKMEELKILSEQNKALQSEVQKLQTAVSQQ 727
Cdd:PRK03918 414 IGELKKEIKELKKAIEELKKAKGKCPVcgreltEEHRKELLEEYTA-ELKRIEKELKEIEEKERKLRKELRELEKVLKKE 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 728 PNKDVVEQMEKCIQEKDEKLRTVEelletgliqvatrEEELSAIRTENSTLTREVQELKAKQSdqvsfvSLIEDLKRvih 807
Cdd:PRK03918 493 SELIKLKELAEQLKELEEKLKKYN-------------LEELEKKAEEYEKLKEKLIKLKGEIK------SLKKELEK--- 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 808 ekdgqIKSVEELLEVELLKVANKEKtvqlsvtsqvqELQNLLRGKEEQVNSMKAALEDRDRDLRgrgtcaqvcstPQFEE 887
Cdd:PRK03918 551 -----LEELKKKLAELEKKLDELEE-----------ELAELLKELEELGFESVEELEERLKELE-----------PFYNE 603
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 888 LESvLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLShQKHQQASFPSQEELQTVISEKEKEITDLCNE 967
Cdd:PRK03918 604 YLE-LKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELE-ELEKKYSEEEYEELREEYLELSRELAGLRAE 681
|
570 580
....*....|....*....|....*.
gi 1907099791 968 LESLKNAVEHQRKKNNERRQHVEAIE 993
Cdd:PRK03918 682 LEELEKRREEIKKTLEKLKEELEERE 707
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
546-1234 |
3.03e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.35 E-value: 3.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 546 KQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEalKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDS 625
Cdd:pfam02463 171 KKEALKKLIEETENLAELIIDLEELKLQELKLKEQAK--KALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRD 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 626 LANEQDH---LASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKmQKSIHVKEDKIRLLEEQLQHEVASKMEE 702
Cdd:pfam02463 249 EQEEIESskqEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELK-SELLKLERRKVDDEEKLKESEKEKKKAE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 703 LKILSEQNKALQSEVQKLQTAVSQQPNKDVVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTREV 782
Cdd:pfam02463 328 KELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEA 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 783 QELKAKQSDQVSFVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQNLLRGKEEQVNSMKAA 862
Cdd:pfam02463 408 QLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLE 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 863 LEDRDRDLRGRGTCAQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSK---------MSELLKEVQEENKFLKCQ 933
Cdd:pfam02463 488 LLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENykvaistavIVEVSATADEVEERQKLV 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 934 L----SHQKHQQASFPSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERRQHVEAIELESKDLLKRLFPTVSV 1009
Cdd:pfam02463 568 RalteLPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESG 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1010 PSNLNYSEWLRGFEKKAKACVAGTSDAEAVKVLEHRLKEASEM-HTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKW 1088
Cdd:pfam02463 648 LRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAkEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRV 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1089 KIKADESQRMIKQMQSSFTASERELERLRQENKDMENLRREREhlemELEKAEMERSTYVMEVRELKDLLTELQKKLDDS 1168
Cdd:pfam02463 728 QEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELS----LKEKELAEEREKTEKLKVEEEKEEKLKAQEEEL 803
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907099791 1169 YSEAVRQNEELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQQSLNSIHSKISLKAAGDTVVIEN 1234
Cdd:pfam02463 804 RALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELL 869
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
887-1169 |
3.12e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 44.92 E-value: 3.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 887 ELESVLKEKDNEikRIEVKLKDTeSDVSKMSELLKEVQEENKFLKCQLSHQKHQqasfpSQEELQTVISEK----EKEIT 962
Cdd:PRK05771 32 HIEDLKEELSNE--RLRKLRSLL-TKLSEALDKLRSYLPKLNPLREEKKKVSVK-----SLEELIKDVEEElekiEKEIK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 963 DLCNELESLKNAVEhqrkknnERRQHVEAIE-LESKDLLkrlfptvsvPSNLNYSEWLRGFEKKAKACVAGTSDAEAVKV 1041
Cdd:PRK05771 104 ELEEEISELENEIK-------ELEQEIERLEpWGNFDLD---------LSLLLGFKYVSVFVGTVPEDKLEELKLESDVE 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1042 LEHRLKEASEMHTLLQLeceKYKSVLAETEGILQKLqrSVEQEESKWKIKADESQRMIKQMQSSFtasERELERLRQE-- 1119
Cdd:PRK05771 168 NVEYISTDKGYVYVVVV---VLKELSDEVEEELKKL--GFERLELEEEGTPSELIREIKEELEEI---EKERESLLEElk 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907099791 1120 ---NKDMENLRREREHLEMELEKAEME------RSTYVME----VRELKDLLTELQKKLDDSY 1169
Cdd:PRK05771 240 elaKKYLEELLALYEYLEIELERAEALskflktDKTFAIEgwvpEDRVKKLKELIDKATGGSA 302
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
319-752 |
3.90e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 3.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 319 KEALKKSNKGELSGLLHQLQEKERLLSAMKEDAAASKERCKQLtQEMMTEKERSSVVIARMKDRIGTLEKEHNIFQNkmh 398
Cdd:COG4717 55 ADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEEL-EELEEELEELEAELEELREELEKLEKLLQLLPL--- 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 399 asYQETQQMQMKFQQVQEQMEAEIAHLKQENGiLRDAVSNTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQ 478
Cdd:COG4717 131 --YQELEALEAELAELPERLEELEERLEELRE-LEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQR 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 479 KKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSK---QQLEQRLMQ 555
Cdd:COG4717 208 LAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIagvLFLVLGLLA 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 556 LMESEQKRASKEESLQIQVQDILEQNEALKAQ-IQQFHSQIAAQTSASV-LAEELHKVIAEKDKQLKQTEDsLANEQDHL 633
Cdd:COG4717 288 LLFLLLAREKASLGKEAEELQALPALEELEEEeLEELLAALGLPPDLSPeELLELLDRIEELQELLREAEE-LEEELQLE 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 634 ASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLL-----EEQLQHEVASKMEELKILSE 708
Cdd:COG4717 367 ELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELlealdEEELEEELEELEEELEELEE 446
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 1907099791 709 QNKALQSEVQKLQTAVSQQPNKDVVEQMEKCIQEKDEKLRTVEE 752
Cdd:COG4717 447 ELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAE 490
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
526-746 |
5.21e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 5.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 526 VAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAA-QTSASVL 604
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAElEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 605 AEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDK 684
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907099791 685 IRLLE-------EQLQHEVASKMEELKILSEQNKALQSEVQKLQTavSQQPNKDVVEQMEKCIQEKDEK 746
Cdd:COG4942 176 LEALLaeleeerAALEALKAERQKLLARLEKELAELAAELAELQQ--EAEELEALIARLEAEAAAAAER 242
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
463-668 |
5.37e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.05 E-value: 5.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 463 SELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQskfvAKENEVQSLHSKLTDT 542
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIA----EAEAEIEERREELGER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 543 LVSKQQ---LEQRLMQLMESEQ-----KRASKEESLQIQVQDILEQNEALKAQIQQFHSQI--------AAQTSASVLAE 606
Cdd:COG3883 92 ARALYRsggSVSYLDVLLGSESfsdflDRLSALSKIADADADLLEELKADKAELEAKKAELeaklaeleALKAELEAAKA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907099791 607 ELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATA 668
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAA 233
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
948-1200 |
7.80e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.77 E-value: 7.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 948 EELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERRQHVEAIELESKDLLKRLFPTVSVPSNLNySEWLRGFEKKAK 1027
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLE-QDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1028 ACVAGTSDAEAVKVLEHR-------LKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKIKADESQRM-- 1098
Cdd:COG1196 314 LEERLEELEEELAELEEEleeleeeLEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAlr 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1099 --------IKQMQSSFTASERELERLRQENKDMENLRREREHLEMELEKAEMERSTYVMEVRELKDLLTELQKKLDDSYS 1170
Cdd:COG1196 394 aaaelaaqLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
|
250 260 270
....*....|....*....|....*....|
gi 1907099791 1171 EAVRQNEELNLLKTQLNETHSKLQNEQTER 1200
Cdd:COG1196 474 LLEAALAELLEELAEAAARLLLLLEAEADY 503
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
324-529 |
9.91e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 9.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 324 KSNKGELSGLLHQLQEKERLLSAMKEDAAASKERCKQLTQEMMTEKERSSVviaRMKDRIGTLEKEHNIFQNkMHASYQE 403
Cdd:pfam15921 649 KDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKM---QLKSAQSELEQTRNTLKS-MEGSDGH 724
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 404 TQQMQMKFQQVQEQMEAEIAHLKQENGILRDAVSNTtNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAE 483
Cdd:pfam15921 725 AMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNA-NKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLK 803
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1907099791 484 QAATQLKVQLQEAERRWEEVQSYIRKRtaEHEAAQQDLQSKFVAKE 529
Cdd:pfam15921 804 EKVANMEVALDKASLQFAECQDIIQRQ--EQESVRLKLQHTLDVKE 847
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
311-640 |
1.02e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 311 LKEKSGVI---------KEALKKSNKGELSGLLHQLQEKERLLSAMKEDAAASKERCKQLTQEMMTEKERssvvIARMKD 381
Cdd:TIGR02169 648 LFEKSGAMtggsraprgGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRK----IGEIEK 723
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 382 RIGTLEKEHNIFQNKMHASYQETQQMQMKFQQVQ----------EQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAEL 451
Cdd:TIGR02169 724 EIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKselkeleariEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKL 803
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 452 NKLRQDCGRLVSELNEKTGKLQQEG------------------VQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAE 513
Cdd:TIGR02169 804 EEEVSRIEARLREIEQKLNRLTLEKeylekeiqelqeqridlkEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESR 883
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 514 HEaaqqDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEA------LKAQ 587
Cdd:TIGR02169 884 LG----DLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEelsledVQAE 959
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1907099791 588 IQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEEL 640
Cdd:TIGR02169 960 LQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEY 1012
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
336-1003 |
1.03e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.67 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 336 QLQEKERLLSAMKEDAAASKERCKQLTQEMMTEKERSSVVIARMKDRIGTLEKEHNIFQNKMHASYQETQQMQMKFQQVQ 415
Cdd:pfam12128 277 RQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSEL 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 416 EQMEAEIahlkqengilrDAVSNTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAATQ-----LK 490
Cdd:pfam12128 357 ENLEERL-----------KALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQaleseLR 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 491 VQLQEAERRWEEVQSYIRKRTAEHE------AAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLmesEQKRA 564
Cdd:pfam12128 426 EQLEAGKLEFNEEEYRLKSRLGELKlrlnqaTATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQA---RKRRD 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 565 SKEESLQIQVQDILEQNEALKAQIQQF----HSQIA-AQTSASVLAEELHKVIAEkdKQLKQTEdsLANEQDhlaskEEE 639
Cdd:pfam12128 503 QASEALRQASRRLEERQSALDELELQLfpqaGTLLHfLRKEAPDWEQSIGKVISP--ELLHRTD--LDPEVW-----DGS 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 640 LKDVQNMnFLLKAEVQKLQA---LANEQAATAhEVEKMQKSIHVKEDKIRLLEEQLQHEVASkmeelkiLSEQNKALQSE 716
Cdd:pfam12128 574 VGGELNL-YGVKLDLKRIDVpewAASEEELRE-RLDKAEEALQSAREKQAAAEEQLVQANGE-------LEKASREETFA 644
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 717 VQKLQTAVSQQPNKDVVEQmekciQEKDEKLRTVEElletgliQVATREEELSAIRTENSTLTREVQELKAKQSDQvsfv 796
Cdd:pfam12128 645 RTALKNARLDLRRLFDEKQ-----SEKDKKNKALAE-------RKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQ---- 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 797 sliedlkrvihekdgqiKSVEELLEVELLKVANKEKTVQLSVTSqvqelQNLLRGKEEQVNSMKAALEDRDRDLRGRGTC 876
Cdd:pfam12128 709 -----------------KREARTEKQAYWQVVEGALDAQLALLK-----AAIAARRSGAKAELKALETWYKRDLASLGVD 766
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 877 AQvcstpqfeelesVLKEKDNEIKRIEVKLKDTESDVSKMsellkevqeenkflkcqLSHQKHQQASFPSQEE-LQTVIS 955
Cdd:pfam12128 767 PD------------VIAKLKREIRTLERKIERIAVRRQEV-----------------LRYFDWYQETWLQRRPrLATQLS 817
|
650 660 670 680
....*....|....*....|....*....|....*....|....*...
gi 1907099791 956 EKEKEITDLCNELESLKNAVEHQRKKNNERRQHVEAIELESKDLLKRL 1003
Cdd:pfam12128 818 NIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGL 865
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
416-600 |
1.17e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 416 EQMEAEIAHLKQENGILrdAVSNTTNQLESKQS---AELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAT--QLK 490
Cdd:COG3206 192 EEAEAALEEFRQKNGLV--DLSEEAKLLLQQLSeleSQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPViqQLR 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 491 VQLQEAERRWEE-----------VQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMES 559
Cdd:COG3206 270 AQLAELEAELAElsarytpnhpdVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPEL 349
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1907099791 560 EQKRASKEESLQIQvQDILEQneaLKAQIQQFHSQIAAQTS 600
Cdd:COG3206 350 EAELRRLEREVEVA-RELYES---LLQRLEEARLAEALTVG 386
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
481-692 |
1.33e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 481 NAEQAATqLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQ-----SKFVAKENEVQSLHSKLtdtlvskQQLEQRLMQ 555
Cdd:COG4913 608 NRAKLAA-LEAELAELEEELAEAEERLEALEAELDALQERREalqrlAEYSWDEIDVASAEREI-------AELEAELER 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 556 LMESeqkraskeeslQIQVQDILEQNEALKAQIQQFHSQIaaqtsasvlaEELHKVIAEKDKQLKQTEDSLANEQDHLAS 635
Cdd:COG4913 680 LDAS-----------SDDLAALEEQLEELEAELEELEEEL----------DELKGEIGRLEKELEQAEEELDELQDRLEA 738
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1907099791 636 KEEELKDVQNmnfllkAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQL 692
Cdd:COG4913 739 AEDLARLELR------ALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEEL 789
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1036-1226 |
1.50e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1036 AEAVKVLEHRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKIKADESQRMIKQ-------MQSSFTA 1108
Cdd:COG4942 54 LKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQpplalllSPEDFLD 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1109 SERELERLRQENkdmENLRREREHLEMELEkaemerstyvmEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNE 1188
Cdd:COG4942 134 AVRRLQYLKYLA---PARREQAEELRADLA-----------ELAALRAELEAERAELEALLAELEEERAALEALKAERQK 199
|
170 180 190
....*....|....*....|....*....|....*...
gi 1907099791 1189 THSKLQNEQTERKKVADDLHKAQQSLNSIHSKISLKAA 1226
Cdd:COG4942 200 LLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
415-535 |
1.73e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 415 QEQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQE-------GVQKKNAEQAAT 487
Cdd:COG4913 304 LARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLeallaalGLPLPASAEEFA 383
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1907099791 488 QLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSL 535
Cdd:COG4913 384 ALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL 431
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
294-783 |
1.78e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.79 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 294 LKTMMFSEDEALCVVDLLKEKSGVIKEALKKSNK------GELSGLLHQLQEKERLLSAMKEDAAASKERCKQLTQEMMT 367
Cdd:pfam05483 256 MKDLTFLLEESRDKANQLEEKTKLQDENLKELIEkkdhltKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEA 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 368 EKERS-------SVVIARMKDRIGTLEKEHNIFQNKMHASYQETQQMQMKFQQVQEQMEaEIAHLKQENGILRDAVSNTT 440
Cdd:pfam05483 336 QMEELnkakaahSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELE-EMTKFKNNKEVELEELKKIL 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 441 NQLEsKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEH-----E 515
Cdd:pfam05483 415 AEDE-KLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNieltaH 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 516 AAQQDLQSKFVAKE--NEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHS 593
Cdd:pfam05483 494 CDKLLLENKELTQEasDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEE 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 594 QIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNM-NFLLKAEVQKLQALANEQAATAHEVE 672
Cdd:pfam05483 574 NARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAeNKQLNAYEIKVNKLELELASAKQKFE 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 673 KM----QKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQSEVQKLQTAVSQQPNkdvveQMEKCIQEKDEKLR 748
Cdd:pfam05483 654 EIidnyQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKH-----QYDKIIEERDSELG 728
|
490 500 510
....*....|....*....|....*....|....*
gi 1907099791 749 TVEELLETGLIQVATREEELSAIRTENSTLTREVQ 783
Cdd:pfam05483 729 LYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLE 763
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1042-1230 |
2.05e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 2.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1042 LEHRLKEASE-MHTLLQLE--CEKYKSvLAETEGILQKLQRSV-----EQEESKWKIKADESQRMIKQMQSSFTASEREL 1113
Cdd:COG4913 240 AHEALEDAREqIELLEPIRelAERYAA-ARERLAELEYLRAALrlwfaQRRLELLEAELEELRAELARLEAELERLEARL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1114 ERLRQENKDMENLRRER-----EHLEMELEKAEMERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNE 1188
Cdd:COG4913 319 DALREELDELEAQIRGNggdrlEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEE 398
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1907099791 1189 THSKLQNEQTERKkvaDDLHKAQQSLNSIHSKI-SLKAAGDTV 1230
Cdd:COG4913 399 ELEALEEALAEAE---AALRDLRRELRELEAEIaSLERRKSNI 438
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
885-1217 |
2.34e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 2.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 885 FEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQASFPSQEELQTVISEKEKEITDL 964
Cdd:PRK03918 164 YKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEEL 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 965 CNELESLKNAVEHQRKKNNERRQHVEAIELESKDLLKRLFPTVSVPSNLNYSEWLRGF-----EKKAKACVAGTSDAEAV 1039
Cdd:PRK03918 244 EKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFyeeylDELREIEKRLSRLEEEI 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1040 KVLEHRLKEASEMHTLLQLECEKYKSV---LAETEGILQKLQRSVEQEESKWKIKA-------DESQRMIKQMQSSFTAS 1109
Cdd:PRK03918 324 NGIEERIKELEEKEERLEELKKKLKELekrLEELEERHELYEEAKAKKEELERLKKrltgltpEKLEKELEELEKAKEEI 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1110 ERELERLRQENKDMENLRREREHLEMELEKAEMERSTYVMEVRE--LKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLN 1187
Cdd:PRK03918 404 EEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEehRKELLEEYTAELKRIEKELKEIEEKERKLRKELR 483
|
330 340 350
....*....|....*....|....*....|..
gi 1907099791 1188 ETHSKLQNEQTERK--KVADDLHKAQQSLNSI 1217
Cdd:PRK03918 484 ELEKVLKKESELIKlkELAEQLKELEEKLKKY 515
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
557-873 |
2.70e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 42.15 E-value: 2.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 557 MESEQKR-ASKEESLQIQVQDILEQNEALKAQIQQfHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLAS 635
Cdd:PLN03229 413 VDPERKVnMKKREAVKTPVRELEGEVEKLKEQILK-AKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENL 491
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 636 KEEELK---DVQNMNFLLKAEVQKLQALANEQAATA-------HEVEKMQ-----KSIHVKEDKIRLLEEQLQHEVASKM 700
Cdd:PLN03229 492 REEFSKansQDQLMHPVLMEKIEKLKDEFNKRLSRApnylslkYKLDMLNefsraKALSEKKSKAEKLKAEINKKFKEVM 571
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 701 EELKIlSEQNKALQSEVQKLQTAVSQQPNKDVVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAiRTENSTLTR 780
Cdd:PLN03229 572 DRPEI-KEKMEALKAEVASSGASSGDELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAE-QTPPPNLQE 649
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 781 EVQELKAKQSDQVSFVSLIEDLKRVIHEKDGQI-KSVEELLEVELLKVANKEKTVQLSVTSQVQELQnlLRGKEEQVNSM 859
Cdd:PLN03229 650 KIESLNEEINKKIERVIRSSDLKSKIELLKLEVaKASKTPDVTEKEKIEALEQQIKQKIAEALNSSE--LKEKFEELEAE 727
|
330
....*....|....
gi 1907099791 860 KAALEDRDRDLRGR 873
Cdd:PLN03229 728 LAAARETAAESNGS 741
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1036-1226 |
2.92e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.85 E-value: 2.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1036 AEAVKVLEHRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKIKADESQRMIKQMQSSFTASERELER 1115
Cdd:COG1196 259 EAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1116 LRQENKDMENLRREREHLEMELEKAEMERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQN 1195
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER 418
|
170 180 190
....*....|....*....|....*....|.
gi 1907099791 1196 EQTERKKVADDLHKAQQSLNSIHSKISLKAA 1226
Cdd:COG1196 419 LEEELEELEEALAELEEEEEEEEEALEEAAE 449
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1047-1212 |
3.10e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 3.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1047 KEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKIKAD-ESQRMIKQMQSSFTAS-ERELERLRQENKDME 1124
Cdd:pfam17380 282 KAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEmDRQAAIYAEQERMAMErERELERIRQEERKRE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1125 NLRREREHLEMELEKaemerstyvmeVRELKDLLTELQKKlddsySEAVRQN-EELNLLKTQLNETHSKLQNEQTERKKV 1203
Cdd:pfam17380 362 LERIRQEEIAMEISR-----------MRELERLQMERQQK-----NERVRQElEAARKVKILEEERQRKIQQQKVEMEQI 425
|
....*....
gi 1907099791 1204 ADDLHKAQQ 1212
Cdd:pfam17380 426 RAEQEEARQ 434
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
612-815 |
3.14e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 3.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 612 IAEKDKQLKQTEDSLANEQDHLASKEEELKDVQnmnfllkaevQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQ 691
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALL----------KQLAALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 692 LQHEVASKMEELKILSEQNKALQ--SEVQKLQTAVSQQPNKD----------VVEQMEKCIQEKDEKLRTVEEL------ 753
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYrlGRQPPLALLLSPEDFLDavrrlqylkyLAPARREQAEELRADLAELAALraelea 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907099791 754 ----LETGLIQVATREEELSAIRTE--------NSTLTREVQELKAKQSDQVSFVSLIEDLKRVIHEKDGQIKS 815
Cdd:COG4942 172 eraeLEALLAELEEERAALEALKAErqkllarlEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
327-1194 |
3.23e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.96 E-value: 3.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 327 KGELSGLLHQLQEKERLLSAMKEDAAASKERCKQLTQEMMTEKERSSVVIARMKDRIGTLEKEHNIFQNKMHASYQETQQ 406
Cdd:TIGR01612 785 KSKISEIKNHYNDQINIDNIKDEDAKQNYDKSKEYIKTISIKEDEIFKIINEMKFMKDDFLNKVDKFINFENNCKEKIDS 864
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 407 MQMKFQQVQEQMEAEIA--HLKQENGILRDAVS--NTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNA 482
Cdd:TIGR01612 865 EHEQFAELTNKIKAEISddKLNDYEKKFNDSKSliNEINKSIEEEYQNINTLKKVDEYIKICENTKESIEKFHNKQNILK 944
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 483 EQAATQLKV----QLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSK------QQLEQR 552
Cdd:TIGR01612 945 EILNKNIDTikesNLIEKSYKDKFDNTLIDKINELDKAFKDASLNDYEAKNNELIKYFNDLKANLGKNkenmlyHQFDEK 1024
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 553 ------LMQLMESEQKRASK-EESLQIQVQDILEQNEALKAQ-IQQFHSQIAAQTSASV-----------------LAEE 607
Cdd:TIGR01612 1025 ekatndIEQKIEDANKNIPNiEIAIHTSIYNIIDEIEKEIGKnIELLNKEILEEAEINItnfneikeklkhynfddFGKE 1104
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 608 LHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDvQNMNFL--LKAEVQKLQALANEQAAT--AHEVEKMQKSIHVKED 683
Cdd:TIGR01612 1105 ENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKK-KSENYIdeIKAQINDLEDVADKAISNddPEEIEKKIENIVTKID 1183
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 684 KIRLLEEQLQhEVASKMEELkilsEQNKALQSEVQKLQTAVSQQPNKDVVEQ--------------MEKCIQEKDE-KLR 748
Cdd:TIGR01612 1184 KKKNIYDEIK-KLLNEIAEI----EKDKTSLEEVKGINLSYGKNLGKLFLEKideekkksehmikaMEAYIEDLDEiKEK 1258
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 749 TVEELLETGLIQVATREEEL-----------SAIRTENSTLTREVQELKAKQSDQVSFVSLIEDLKRVIHEKDGQIKSVE 817
Cdd:TIGR01612 1259 SPEIENEMGIEMDIKAEMETfnishdddkdhHIISKKHDENISDIREKSLKIIEDFSEESDINDIKKELQKNLLDAQKHN 1338
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 818 ELLEVELLKVANKEKTVQLS----VTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQVCStpqfeELESVLK 893
Cdd:TIGR01612 1339 SDINLYLNEIANIYNILKLNkikkIIDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDDINLEECKS-----KIESTLD 1413
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 894 EKDNE--IKRIEVKLKDTESDVSKMSELLKEVQEENKflKCQLSHQKHQQASFPSQEELQTvisEKEKEITDLCNELESL 971
Cdd:TIGR01612 1414 DKDIDecIKKIKELKNHILSEESNIDTYFKNADENNE--NVLLLFKNIEMADNKSQHILKI---KKDNATNDHDFNINEL 1488
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 972 KNAVEHQRKKNNERRQHVEAIElESKDLLKRLFPTVSVPSNLNYSEWLRGFEKKAKacvagtSDAEAVkvlehrLKEASE 1051
Cdd:TIGR01612 1489 KEHIDKSKGCKDEADKNAKAIE-KNKELFEQYKKDVTELLNKYSALAIKNKFAKTK------KDSEII------IKEIKD 1555
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1052 MHTLLQLECEKYKSVLAEtegiLQKLQRSVEQEESkwkiKADESQRMIKQMQSSFTASERELERLRQENKDMENLRRERE 1131
Cdd:TIGR01612 1556 AHKKFILEAEKSEQKIKE----IKKEKFRIEDDAA----KNDKSNKAAIDIQLSLENFENKFLKISDIKKKINDCLKETE 1627
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907099791 1132 HLEMELEKAEMErsTYVMEVRELKDLLTELQKKLDDSYSeavrQNEELNLLKTQLNETHSKLQ 1194
Cdd:TIGR01612 1628 SIEKKISSFSID--SQDTELKENGDNLNSLQEFLESLKD----QKKNIEDKKKELDELDSEIE 1684
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
565-777 |
3.34e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 3.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 565 SKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKD-- 642
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEE---YNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEra 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 643 ---------VQNMNFLLKAE-----VQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQhEVASKMEELKILSE 708
Cdd:COG3883 93 ralyrsggsVSYLDVLLGSEsfsdfLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLA-ELEALKAELEAAKA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907099791 709 QNKALQSEVQKLQTAVSQQPNKDVVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENST 777
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 240
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1028-1214 |
3.79e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 3.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1028 ACVAGTSDAEAVKVLEHRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQeeskwkikadeSQRMIKQMQSSFT 1107
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAA-----------LARRIRALEQELA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1108 ASERELERLRQENKDMENLRREREHLEMELEKA--------------------EMERSTYVME--VRELKDLLTEL---Q 1162
Cdd:COG4942 80 ALEAELAELEKEIAELRAELEAQKEELAELLRAlyrlgrqpplalllspedflDAVRRLQYLKylAPARREQAEELradL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1907099791 1163 KKLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQQSL 1214
Cdd:COG4942 160 AELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAEL 211
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
826-1213 |
3.86e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 3.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 826 KVANKEKTVQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQVCSTPQ-FEELESVLKEKDNEIKRIEV 904
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQeLEALEAELAELPERLEELEE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 905 KLKDTESDVSKMSELLKEVQEENKFLkcqlshqkhqqasfpsQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNE 984
Cdd:COG4717 154 RLEELRELEEELEELEAELAELQEEL----------------EELLEQLSLATEEELQDLAEELEELQQRLAELEEELEE 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 985 RRQHVEAIELESKDLLKRLFPTVSVPSNLNYSEWLRGFEKKAKACVAGTSDAEAVKVLEHRLKEASEMHTLLQLECEKYK 1064
Cdd:COG4717 218 AQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREK 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1065 SVLAETEGILQKLQRSVEQEESKWKIKADESQRMIKQMQSSFTASERELERLRQENKDMENLRREREHLEMELEKAEM-- 1142
Cdd:COG4717 298 ASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALla 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1143 -----------ERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQ---------NEELNLLKTQLNETHSKLQNEQTERKK 1202
Cdd:COG4717 378 eagvedeeelrAALEQAEEYQELKEELEELEEQLEELLGELEELlealdeeelEEELEELEEELEELEEELEELREELAE 457
|
410
....*....|.
gi 1907099791 1203 VADDLHKAQQS 1213
Cdd:COG4717 458 LEAELEQLEED 468
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
729-1216 |
4.17e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.54 E-value: 4.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 729 NKDVVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQELKAKQSDqvsfvsliedLKRVIHE 808
Cdd:TIGR04523 115 DKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNL----------LEKEKLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 809 KDGQIKSVEELLEVELLKVANKEKTVQL--SVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQVCSTPQFE 886
Cdd:TIGR04523 185 IQKNIDKIKNKLLKLELLLSNLKKKIQKnkSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNK 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 887 ELESvLKEKDNEIKRIEVKLKDTESDV----SKMSELLKEVQEE-NKFLKCQLSHQKHQQasfpsqEELQTVISEKEKEI 961
Cdd:TIGR04523 265 IKKQ-LSEKQKELEQNNKKIKELEKQLnqlkSEISDLNNQKEQDwNKELKSELKNQEKKL------EEIQNQISQNNKII 337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 962 TDLCNELESLKNAVEHQRKKNNERRQHVEAIELESKDLLKRlfptvsvpsNLNYSEWLRGFEKKAKACVAGTSDAEAV-K 1040
Cdd:TIGR04523 338 SQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE---------NQSYKQEIKNLESQINDLESKIQNQEKLnQ 408
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1041 VLEHRLKEASEMHTLLQLECEKYKSVL--------------AETEGILQKLQRSVEQEESKWKIKADE---SQRMIKQMQ 1103
Cdd:TIGR04523 409 QKDEQIKKLQQEKELLEKEIERLKETIiknnseikdltnqdSVKELIIKNLDNTRESLETQLKVLSRSinkIKQNLEQKQ 488
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1104 SSFTASERELERLRQENKDMEN----LRREREHLEMELEKAEMERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEEL 1179
Cdd:TIGR04523 489 KELKSKEKELKKLNEEKKELEEkvkdLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNK 568
|
490 500 510
....*....|....*....|....*....|....*..
gi 1907099791 1180 NLlkTQLNETHSKLQNEQTERKKVADDLHKAQQSLNS 1216
Cdd:TIGR04523 569 EI--EELKQTQKSLKKKQEEKQELIDQKEKEKKDLIK 603
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
599-868 |
4.39e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.26 E-value: 4.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 599 TSASVLAEELHKVIAEKDKQLKQTEDSLAN-EQDHL-ASKEEELKDVQNMNFLLKAEVQKlQALANEQAATAHEVEKMQK 676
Cdd:pfam17380 266 TENEFLNQLLHIVQHQKAVSERQQQEKFEKmEQERLrQEKEEKAREVERRRKLEEAEKAR-QAEMDRQAAIYAEQERMAM 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 677 SIHVKEDKIRL------LEEQLQHEVA---SKMEELKIL----SEQNKALQSEV-----QKLQTAVSQQPNKDVVEQMEK 738
Cdd:pfam17380 345 ERERELERIRQeerkreLERIRQEEIAmeiSRMRELERLqmerQQKNERVRQELeaarkVKILEEERQRKIQQQKVEMEQ 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 739 CIQEKDE----KLRTVEELLETGLIQV----ATREEELSAIRTENSTLTREVQELKAKQSDQvsfvSLIEDLKRVIHEKD 810
Cdd:pfam17380 425 IRAEQEEarqrEVRRLEEERAREMERVrleeQERQQQVERLRQQEEERKRKKLELEKEKRDR----KRAEEQRRKILEKE 500
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1907099791 811 GQIKSVEELLEVELLKVANKEKTVQLSVTSQVQElqnllRGKEEQVNSMKAALEDRDR 868
Cdd:pfam17380 501 LEERKQAMIEEERKRKLLEKEMEERQKAIYEEER-----RREAEEERRKQQEMEERRR 553
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
547-663 |
4.49e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.22 E-value: 4.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 547 QQLEQRLMQL------MESEQKRASKE--ESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQ 618
Cdd:COG0542 414 DELERRLEQLeiekeaLKKEQDEASFErlAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRYGKIPELEKE 493
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1907099791 619 LKQTEDSLANEQDHLASK--EEELKDVQNM------NFLLKAEVQKLQALANE 663
Cdd:COG0542 494 LAELEEELAELAPLLREEvtEEDIAEVVSRwtgipvGKLLEGEREKLLNLEEE 546
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
602-774 |
4.94e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.72 E-value: 4.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 602 SVLAEEL---HKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKmqksi 678
Cdd:PRK09039 42 FFLSREIsgkDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEG----- 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 679 hvkedKIRLLEEQL---QHEVASKMEELKILSEQNKALQSEVQKLQTAVSQQPNKDvveqmekciQEKDEKLRTVEELLE 755
Cdd:PRK09039 117 -----RAGELAQELdseKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD---------RESQAKIADLGRRLN 182
|
170
....*....|....*....
gi 1907099791 756 TGLiqvATREEELSAIRTE 774
Cdd:PRK09039 183 VAL---AQRVQELNRYRSE 198
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
482-597 |
4.99e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 40.80 E-value: 4.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 482 AEQAATQLKVQLQEAERRWEEVQSYI--RKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMES 559
Cdd:COG1566 81 LQAALAQAEAQLAAAEAQLARLEAELgaEAEIAAAEAQLAAAQAQLDLAQRELERYQALYKKGAVSQQELDEARAALDAA 160
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1907099791 560 EQKRASKEESLQIQVQDILEQNE--ALKAQIQQFHSQIAA 597
Cdd:COG1566 161 QAQLEAAQAQLAQAQAGLREEEElaAAQAQVAQAEAALAQ 200
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
875-1140 |
6.60e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 6.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 875 TCAQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQAsfpsqeELQTVI 954
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELA------ALEAEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 955 SEKEKEITDLCNELESLKNAVehqrkknneRRQHVEAIELESKDLLKRLFPTVSVPSNLNYSEWLRGFEKkakacvagtS 1034
Cdd:COG4942 86 AELEKEIAELRAELEAQKEEL---------AELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAP---------A 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1035 DAEAVKVLEHRLKEASEMHTLLQLECEKYKSVLAEtegiLQKLQRSVEQEESkwkikadESQRMIKQMQSSFTASERELE 1114
Cdd:COG4942 148 RREQAEELRADLAELAALRAELEAERAELEALLAE----LEEERAALEALKA-------ERQKLLARLEKELAELAAELA 216
|
250 260
....*....|....*....|....*.
gi 1907099791 1115 RLRQENKDMENLRREREHLEMELEKA 1140
Cdd:COG4942 217 ELQQEAEELEALIARLEAEAAAAAER 242
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1054-1219 |
6.82e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.65 E-value: 6.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1054 TLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKIKADESQRMIKQMQSSFTASERELERLRQENKDMENLRREREHL 1133
Cdd:pfam07888 30 ELLQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSAS 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 1134 EMELEKaemERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQQS 1213
Cdd:pfam07888 110 SEELSE---EKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEE 186
|
....*.
gi 1907099791 1214 LNSIHS 1219
Cdd:pfam07888 187 LRSLSK 192
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
341-723 |
7.10e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 7.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 341 ERLLSAMKEDAAASKERC--KQLTQEMMTEkerssvvIARMKDRIGTLEKEHNIFQNKMhASYQETQQMQMKFQQVQEQM 418
Cdd:COG3096 285 ERALELRRELFGARRQLAeeQYRLVEMARE-------LEELSARESDLEQDYQAASDHL-NLVQTALRQQEKIERYQEDL 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 419 EAEIAHLKQENGILRDAVSNTTNQLESKQSAElnklrQDCGRLVSELNEKTGKL---QQEGVQKKNAEQAATQLKVQLQE 495
Cdd:COG3096 357 EELTERLEEQEEVVEEAAEQLAEAEARLEAAE-----EEVDSLKSQLADYQQALdvqQTRAIQYQQAVQALEKARALCGL 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 496 AERRWEEVQSYIrkrtAEHEAAQQDLQSkfvakenEVQSLHSKLTDTLVSKQQLEQ--RLMQLMESEQKRASKEESLQIQ 573
Cdd:COG3096 432 PDLTPENAEDYL----AAFRAKEQQATE-------EVLELEQKLSVADAARRQFEKayELVCKIAGEVERSQAWQTAREL 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 574 VQD------ILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVI--------------AEKDKQLKQTEDSLAN----- 628
Cdd:COG3096 501 LRRyrsqqaLAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIgqqldaaeeleellAELEAQLEELEEQAAEaveqr 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099791 629 -----EQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEV-EKMQksihvkedkirlleEQLQHEVASKMEE 702
Cdd:COG3096 581 selrqQLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQEVtAAMQ--------------QLLEREREATVER 646
|
410 420
....*....|....*....|.
gi 1907099791 703 LKILsEQNKALQSEVQKLQTA 723
Cdd:COG3096 647 DELA-ARKQALESQIERLSQP 666
|
|
| |
