NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1907137231|ref|XP_036016043|]
View 

sickle tail protein isoform X19 [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
AIP3 super family cl38141
Actin interacting protein 3;
38-116 6.16e-08

Actin interacting protein 3;


The actual alignment was detected with superfamily member pfam03915:

Pssm-ID: 427585 [Multi-domain]  Cd Length: 407  Bit Score: 56.39  E-value: 6.16e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137231   38 YLQYGDETKQLRMPNEVTsTDTIRALFVS---------AFPqqltmkmlespsvAIYIKDDSRNVYYELNDVRNIQDRSL 108
Cdd:pfam03915    1 FLQLGRKVKKVVLPLPLT-IASLRLLFVEkfayspggdDFP-------------EIYIQDPVSGVRYELEDLSDVKDGSV 66

                   ....*...
gi 1907137231  109 LkVYNKDP 116
Cdd:pfam03915   67 L-SLNIEP 73
 
Name Accession Description Interval E-value
AIP3 pfam03915
Actin interacting protein 3;
38-116 6.16e-08

Actin interacting protein 3;


Pssm-ID: 427585 [Multi-domain]  Cd Length: 407  Bit Score: 56.39  E-value: 6.16e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137231   38 YLQYGDETKQLRMPNEVTsTDTIRALFVS---------AFPqqltmkmlespsvAIYIKDDSRNVYYELNDVRNIQDRSL 108
Cdd:pfam03915    1 FLQLGRKVKKVVLPLPLT-IASLRLLFVEkfayspggdDFP-------------EIYIQDPVSGVRYELEDLSDVKDGSV 66

                   ....*...
gi 1907137231  109 LkVYNKDP 116
Cdd:pfam03915   67 L-SLNIEP 73
 
Name Accession Description Interval E-value
AIP3 pfam03915
Actin interacting protein 3;
38-116 6.16e-08

Actin interacting protein 3;


Pssm-ID: 427585 [Multi-domain]  Cd Length: 407  Bit Score: 56.39  E-value: 6.16e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137231   38 YLQYGDETKQLRMPNEVTsTDTIRALFVS---------AFPqqltmkmlespsvAIYIKDDSRNVYYELNDVRNIQDRSL 108
Cdd:pfam03915    1 FLQLGRKVKKVVLPLPLT-IASLRLLFVEkfayspggdDFP-------------EIYIQDPVSGVRYELEDLSDVKDGSV 66

                   ....*...
gi 1907137231  109 LkVYNKDP 116
Cdd:pfam03915   67 L-SLNIEP 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH