NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1907131665|ref|XP_036017313|]
View 

granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X7 [Mus musculus]

Protein Classification

fibronectin type III domain-containing protein( domain architecture ID 10414115)

fibronectin type III (FN3) domain-containing protein may be involved in specific interactions with other molecules through its FN3 domain

Gene Ontology:  GO:0005515
PubMed:  8981327

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
FN3 super family cl21522
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 1-49 5.07e-07

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


The actual alignment was detected with superfamily member pfam09240:

Pssm-ID: 473895  Cd Length: 96  Bit Score: 46.25  E-value: 5.07e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1907131665   1 MADPGDDVI-TQCIANDLSLLGS---EAYLVVTGRSGAGPVRFLDDVVATKAL 49
Cdd:pfam09240  44 QYYIRDDGTrIGCQFDDLEGLSSsfhQVYICVNGSSSAGPIRSSDQTFQLQNI 96
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 53-141 1.71e-04

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


:

Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 39.40  E-value: 1.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907131665  53 GPPRDVTASCNSSH-CTVSWAPPSTWASltaRDFQFEVQWQSAEPGSTPR-KVLVVEETRLAFPSPAPHGGHKVKVRAgd 130
Cdd:cd00063     2 SPPTNLRVTDVTSTsVTLSWTPPEDDGG---PITGYVVEYREKGSGDWKEvEVTPGSETSYTLTGLKPGTEYEFRVRA-- 76

                          90
                  ....*....|.
gi 1907131665 131 TRMKHWGEWSP 141
Cdd:cd00063    77 VNGGGESPPSE 87
 
Name Accession Description Interval E-value
IL6Ra-bind pfam09240
Interleukin-6 receptor alpha chain, binding; Members of this family adopt a structure ...
 1-49 5.07e-07

Interleukin-6 receptor alpha chain, binding; Members of this family adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6.


Pssm-ID: 401252  Cd Length: 96  Bit Score: 46.25  E-value: 5.07e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1907131665   1 MADPGDDVI-TQCIANDLSLLGS---EAYLVVTGRSGAGPVRFLDDVVATKAL 49
Cdd:pfam09240  44 QYYIRDDGTrIGCQFDDLEGLSSsfhQVYICVNGSSSAGPIRSSDQTFQLQNI 96
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 53-141 1.71e-04

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 39.40  E-value: 1.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907131665  53 GPPRDVTASCNSSH-CTVSWAPPSTWASltaRDFQFEVQWQSAEPGSTPR-KVLVVEETRLAFPSPAPHGGHKVKVRAgd 130
Cdd:cd00063     2 SPPTNLRVTDVTSTsVTLSWTPPEDDGG---PITGYVVEYREKGSGDWKEvEVTPGSETSYTLTGLKPGTEYEFRVRA-- 76

                          90
                  ....*....|.
gi 1907131665 131 TRMKHWGEWSP 141
Cdd:cd00063    77 VNGGGESPPSE 87
 
Name Accession Description Interval E-value
IL6Ra-bind pfam09240
Interleukin-6 receptor alpha chain, binding; Members of this family adopt a structure ...
 1-49 5.07e-07

Interleukin-6 receptor alpha chain, binding; Members of this family adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6.


Pssm-ID: 401252  Cd Length: 96  Bit Score: 46.25  E-value: 5.07e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1907131665   1 MADPGDDVI-TQCIANDLSLLGS---EAYLVVTGRSGAGPVRFLDDVVATKAL 49
Cdd:pfam09240  44 QYYIRDDGTrIGCQFDDLEGLSSsfhQVYICVNGSSSAGPIRSSDQTFQLQNI 96
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 53-141 1.71e-04

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 39.40  E-value: 1.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907131665  53 GPPRDVTASCNSSH-CTVSWAPPSTWASltaRDFQFEVQWQSAEPGSTPR-KVLVVEETRLAFPSPAPHGGHKVKVRAgd 130
Cdd:cd00063     2 SPPTNLRVTDVTSTsVTLSWTPPEDDGG---PITGYVVEYREKGSGDWKEvEVTPGSETSYTLTGLKPGTEYEFRVRA-- 76

                          90
                  ....*....|.
gi 1907131665 131 TRMKHWGEWSP 141
Cdd:cd00063    77 VNGGGESPPSE 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH