NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1907143252|ref|XP_036018450|]
View 

endoplasmic reticulum junction formation protein lunapark isoform X3 [Mus musculus]

Protein Classification

zinc-ribbon domain-containing protein( domain architecture ID 10562191)

zinc-ribbon domain-containing protein such as vertebrate endoplasmic reticulum junction formation protein lunapark, an endoplasmic reticulum (ER)-shaping membrane protein that plays a role in determining ER morphology

Gene Ontology:  GO:0016020|GO:0046872
PubMed:  32851833

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
zinc_ribbon_10 pfam10058
Predicted integral membrane zinc-ribbon metal-binding protein; This domain, found in various ...
 127-177 1.93e-25

Predicted integral membrane zinc-ribbon metal-binding protein; This domain, found in various hypothetical bacterial and eukaryotic metal-binding proteins is a probably zinc-ribbon.


:

Pssm-ID: 401882 [Multi-domain]  Cd Length: 51  Bit Score: 95.78  E-value: 1.93e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1907143252 127 ALDRIVEYLVGDGPQNRYALICQQCFSHNGMALKEEFEYIAFRCAYCFFLN 177
Cdd:pfam10058   1 WFDRVLDYLVGDDPKNRYALICSKCRSHNGLAPKEEYEYVTYRCPNCGALN 51
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
28-137 1.14e-03

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK14971:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 614  Bit Score: 40.53  E-value: 1.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907143252  28 PPSAGAAVTAKPGQEIRQRTAAQrnlsPAPASSSQGPPPQGPVSPGPAKDASAPG-GPPERTVAPALPRRlgspatSVPG 106
Cdd:PRK14971  391 QPSAAAAASPSPSQSSAAAQPSA----PQSATQPAGTPPTVSVDPPAAVPVNPPStAPQAVRPAQFKEEK------KIPV 460

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1907143252 107 MGLHPPGPPLARPILPRERGALDRIVEYLVG 137
Cdd:PRK14971  461 SKVSSLGPSTLRPIQEKAEQATGNIKEAPTG 491
 
Name Accession Description Interval E-value
zinc_ribbon_10 pfam10058
Predicted integral membrane zinc-ribbon metal-binding protein; This domain, found in various ...
 127-177 1.93e-25

Predicted integral membrane zinc-ribbon metal-binding protein; This domain, found in various hypothetical bacterial and eukaryotic metal-binding proteins is a probably zinc-ribbon.


Pssm-ID: 401882 [Multi-domain]  Cd Length: 51  Bit Score: 95.78  E-value: 1.93e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1907143252 127 ALDRIVEYLVGDGPQNRYALICQQCFSHNGMALKEEFEYIAFRCAYCFFLN 177
Cdd:pfam10058   1 WFDRVLDYLVGDDPKNRYALICSKCRSHNGLAPKEEYEYVTYRCPNCGALN 51
COG5415 COG5415
Predicted integral membrane metal-binding protein [General function prediction only];
125-183 4.67e-09

Predicted integral membrane metal-binding protein [General function prediction only];


Pssm-ID: 227702 [Multi-domain]  Cd Length: 251  Bit Score: 55.77  E-value: 4.67e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907143252 125 RGALDRIVEYLVGDGPQ---NRYALICQQCFSHNGMALKEEFEYIAFRCAYCFFLNPARKTR 183
Cdd:COG5415   169 DAWFDKVISVLAGGNELdlsPFKALICPQCHHHNGLYRLAEKPIIEFICPHCNHKNDEVKER 230
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
28-137 1.14e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 40.53  E-value: 1.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907143252  28 PPSAGAAVTAKPGQEIRQRTAAQrnlsPAPASSSQGPPPQGPVSPGPAKDASAPG-GPPERTVAPALPRRlgspatSVPG 106
Cdd:PRK14971  391 QPSAAAAASPSPSQSSAAAQPSA----PQSATQPAGTPPTVSVDPPAAVPVNPPStAPQAVRPAQFKEEK------KIPV 460

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1907143252 107 MGLHPPGPPLARPILPRERGALDRIVEYLVG 137
Cdd:PRK14971  461 SKVSSLGPSTLRPIQEKAEQATGNIKEAPTG 491
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 33-129 1.59e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 39.99  E-value: 1.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907143252  33 AAVTAKPGQEIRQRTAAQRNLSPAPaSSSQGPPPQGPVSPGPAKDASAPGGPPERTVAPALPRRLGSPATSVPGMGLHPP 112
Cdd:NF041121   16 GRAAAPPSPEGPAPTAASQPATPPP-PAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALPVRVP 94

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1907143252 113 GP--------------PLARPILPRERGALD 129
Cdd:NF041121   95 APpalpnplelaralrPLKRRVPSPRRVELD 125
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 43-120 5.64e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 38.06  E-value: 5.64e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907143252  43 IRQRTAAQRNLSPAPASSSQGPPPQGPVSPGPAK-DASAPGGPPERTVAPALPRRLgsPATSVPGMGLHPPGPPLARPI 120
Cdd:NF041121   15 MGRAAAPPSPEGPAPTAASQPATPPPPAAPPSPPgDPPEPPAPEPAPLPAPYPGSL--APPPPPPPGPAGAAPGAALPV 91
 
Name Accession Description Interval E-value
zinc_ribbon_10 pfam10058
Predicted integral membrane zinc-ribbon metal-binding protein; This domain, found in various ...
 127-177 1.93e-25

Predicted integral membrane zinc-ribbon metal-binding protein; This domain, found in various hypothetical bacterial and eukaryotic metal-binding proteins is a probably zinc-ribbon.


Pssm-ID: 401882 [Multi-domain]  Cd Length: 51  Bit Score: 95.78  E-value: 1.93e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1907143252 127 ALDRIVEYLVGDGPQNRYALICQQCFSHNGMALKEEFEYIAFRCAYCFFLN 177
Cdd:pfam10058   1 WFDRVLDYLVGDDPKNRYALICSKCRSHNGLAPKEEYEYVTYRCPNCGALN 51
COG5415 COG5415
Predicted integral membrane metal-binding protein [General function prediction only];
125-183 4.67e-09

Predicted integral membrane metal-binding protein [General function prediction only];


Pssm-ID: 227702 [Multi-domain]  Cd Length: 251  Bit Score: 55.77  E-value: 4.67e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907143252 125 RGALDRIVEYLVGDGPQ---NRYALICQQCFSHNGMALKEEFEYIAFRCAYCFFLNPARKTR 183
Cdd:COG5415   169 DAWFDKVISVLAGGNELdlsPFKALICPQCHHHNGLYRLAEKPIIEFICPHCNHKNDEVKER 230
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
28-137 1.14e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 40.53  E-value: 1.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907143252  28 PPSAGAAVTAKPGQEIRQRTAAQrnlsPAPASSSQGPPPQGPVSPGPAKDASAPG-GPPERTVAPALPRRlgspatSVPG 106
Cdd:PRK14971  391 QPSAAAAASPSPSQSSAAAQPSA----PQSATQPAGTPPTVSVDPPAAVPVNPPStAPQAVRPAQFKEEK------KIPV 460

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1907143252 107 MGLHPPGPPLARPILPRERGALDRIVEYLVG 137
Cdd:PRK14971  461 SKVSSLGPSTLRPIQEKAEQATGNIKEAPTG 491
PRK13729 PRK13729
conjugal transfer pilus assembly protein TraB; Provisional
 37-120 1.16e-03

conjugal transfer pilus assembly protein TraB; Provisional


Pssm-ID: 184281 [Multi-domain]  Cd Length: 475  Bit Score: 40.19  E-value: 1.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907143252  37 AKPGQEIRQRTAAQRNLSPAPASSSQGPPPQGPVSP-----GPAKDASAPGGPPERTVAPAlprrlgSPATSVPGMGLHP 111
Cdd:PRK13729  107 EKLGQDNAALAEQVKALGANPVTATGEPVPQMPASPpgpegEPQPGNTPVSFPPQGSVAVP------PPTAFYPGNGVTP 180


                  ....*....
gi 1907143252 112 PGPPLARPI 120
Cdd:PRK13729  181 PPQVTYQSV 189
PHA03247 PHA03247
large tegument protein UL36; Provisional
 29-123 1.48e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.31  E-value: 1.48e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907143252   29 PSAGAAVTAKPGQEIRQRTAAQRNLSPAPASSSQGPPPQGPVSPGPAKDASAPGGPPERTVAPALPRRLGSPATSVPGMG 108
Cdd:PHA03247  2796 ESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKP 2875

                           90
                   ....*....|....*...
gi 1907143252  109 LHPPGPP---LARPILPR 123
Cdd:PHA03247  2876 AAPARPPvrrLARPAVSR 2893
PHA03247 PHA03247
large tegument protein UL36; Provisional
 28-122 1.49e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.31  E-value: 1.49e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907143252   28 PPSAGAAVTAKPGQEIRQRTAAQRNLSPAPASSSQGPPPQGPVSPGPAKDASAPGGP----PERTVAPALPRRLGSPATS 103
Cdd:PHA03247  2743 AVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPspwdPADPPAAVLAPAAALPPAA 2822

                           90       100
                   ....*....|....*....|....*
gi 1907143252  104 VPGMGLHPP------GPPLARPILP 122
Cdd:PHA03247  2823 SPAGPLPPPtsaqptAPPPPPGPPP 2847
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 33-129 1.59e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 39.99  E-value: 1.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907143252  33 AAVTAKPGQEIRQRTAAQRNLSPAPaSSSQGPPPQGPVSPGPAKDASAPGGPPERTVAPALPRRLGSPATSVPGMGLHPP 112
Cdd:NF041121   16 GRAAAPPSPEGPAPTAASQPATPPP-PAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALPVRVP 94

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1907143252 113 GP--------------PLARPILPRERGALD 129
Cdd:NF041121   95 APpalpnplelaralrPLKRRVPSPRRVELD 125
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 28-126 3.95e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 38.54  E-value: 3.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907143252  28 PPSAGAAVTAKPGQEIRQRTAAQRNLSPAPASSSQGPPPQGPVSPGPAKDASAPGGPPERTVAPALPRRLGSPATSVPGM 107
Cdd:PRK14951  396 QAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASA 475

                          90
                  ....*....|....*....
gi 1907143252 108 GLHPPGPPLARPILPRERG 126
Cdd:PRK14951  476 APAPAAAPAAARLTPTEEG 494
PHA03201 PHA03201
uracil DNA glycosylase; Provisional
 51-119 4.77e-03

uracil DNA glycosylase; Provisional


Pssm-ID: 165468  Cd Length: 318  Bit Score: 37.95  E-value: 4.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907143252  51 RNLSPAPASSSQGPPPQGPVSPGPAKDASAPG-------GPPERTVAPALPRR----------LGSPATSVPGMGLhpPG 113
Cdd:PHA03201    5 RSRSPSPPRRPSPPRPTPPRSPDASPEETPPSppgpgaePPPGRAAGPAAPRRrprgcpagvtFSSSAPPRPPLGL--DD 82


                  ....*.
gi 1907143252 114 PPLARP 119
Cdd:PHA03201   83 APAATP 88
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 43-120 5.64e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 38.06  E-value: 5.64e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907143252  43 IRQRTAAQRNLSPAPASSSQGPPPQGPVSPGPAK-DASAPGGPPERTVAPALPRRLgsPATSVPGMGLHPPGPPLARPI 120
Cdd:NF041121   15 MGRAAAPPSPEGPAPTAASQPATPPPPAAPPSPPgDPPEPPAPEPAPLPAPYPGSL--APPPPPPPGPAGAAPGAALPV 91
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 14-134 6.13e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 38.33  E-value: 6.13e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907143252   14 ERF--DPDS--KKAKEF------EPPSAGAAVTAKPGQEIRQRTAAQRNLSPAPASSSQGPPPQGPVSPGPAKDASAPGG 83
Cdd:PRK12270    16 QQYlaDPNSvdPSWREFfadygpGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAA 95

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1907143252   84 PPERTVAPALPrrlgspatsvpgmglhPPGPPLARPILPRERGALDRIVEY 134
Cdd:PRK12270    96 PAAPPAAAAAA----------------APAAAAVEDEVTPLRGAAAAVAKN 130
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 28-156 9.92e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 37.35  E-value: 9.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907143252  28 PPSAGAAVTAKPGQEIRQRTAAQRNLSPAPASSSQGPPPQGP--------VSPGPAKDASAPGGPP---ERTVAPALPRR 96
Cdd:PRK14959  389 PASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPsprvpwddAPPAPPRSGIPPRPAPrmpEASPVPGAPDS 468

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907143252  97 LGSPATSVPGMGlHPPGPPLARPILPRergALDRIVEYLVG-DGPQNRYALICQQCFSHNG 156
Cdd:PRK14959  469 VASASDAPPTLG-DPSDTAEHTPSGPR---TWDGFLEFCQGrNGQGGRLATVLRQATPEHA 525
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH