|
Name |
Accession |
Description |
Interval |
E-value |
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
213-277 |
1.08e-34 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 126.75 E-value: 1.08e-34
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907165148 213 VGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKV 277
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
60-124 |
5.33e-31 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 116.35 E-value: 5.33e-31
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907165148 60 VGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKL 124
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
213-278 |
3.31e-28 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 108.44 E-value: 3.31e-28
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165148 213 VGDRVLVGGT-KAGVVRFLGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCQPKYGLFAPVHKVT 278
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
60-125 |
2.25e-27 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 106.13 E-value: 2.25e-27
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165148 60 VGERVWVNGN-KPGFIQFLGETQFAPGQWAGIVLDEP-IGKNDGSVAGVRYFQCEPLKGIFTRPSKLT 125
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPlRGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
617-1290 |
4.79e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 97.05 E-value: 4.79e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 617 SAEFAELKTQIERLRLdYQHEIESLQSKQDSERSAHAKEMETMQAKLMkIIKEKEDSLEAVKARLDSAEDQHLVEMEDTL 696
Cdd:TIGR02168 259 TAELQELEEKLEELRL-EVSELEEEIEELQKELYALANEISRLEQQKQ-ILRERLANLERQLEELEAQLEELESKLDELA 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 697 NKLQEAEikvKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDA----LRKANSEGKLELETLRQQLEGAEKQIKNLE 772
Cdd:TIGR02168 337 EELAELE---EKLEELKEELESLEAELEELEAELEELESRLEELEEqletLRSKVAQLELQIASLNNEIERLEARLERLE 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 773 TERNAESSKANSITKELQEKELVLtgLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQF 852
Cdd:TIGR02168 414 DRRERLQQEIEELLKKLEEAELKE--LQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARL 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 853 NVLSSELEKLRENLTDMEAKFKEKDDRED------QLVKAKEK----LENDIAEIMKMSGDNSSQLTKMNDELRLKERSV 922
Cdd:TIGR02168 492 DSLERLQENLEGFSEGVKALLKNQSGLSGilgvlsELISVDEGyeaaIEAALGGRLQAVVVENLNAAKKAIAFLKQNELG 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 923 EELQLKLTKANENAsfLQKSIGEVtLKAEQSQQQAARKHEEEKKELEEKLLE--LEKKMETSYNQCQDLKAKYE------ 994
Cdd:TIGR02168 572 RVTFLPLDSIKGTE--IQGNDREI-LKNIEGFLGVAKDLVKFDPKLRKALSYllGGVLVVDDLDNALELAKKLRpgyriv 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 995 --------------KASSETKTKheeiLQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKaaQTAEDAMQIME 1060
Cdd:TIGR02168 649 tldgdlvrpggvitGGSAKTNSS----ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELE--EELEQLRKELE 722
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1061 QMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQ 1140
Cdd:TIGR02168 723 ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1141 EENVKLAEELGRTRDEVtsHQKLEEERSVLNNqlLEMKKRESEfrkDADEEKASLQKSISLTSALLTEKDAELEKLRNEV 1220
Cdd:TIGR02168 803 EALDELRAELTLLNEEA--ANLRERLESLERR--IAATERRLE---DLEEQIEELSEDIESLAAEIEELEELIEELESEL 875
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1221 TVLRGENATAKSLhsvVQTLESDKVKLELKVKNLELQLKENKRQLSSSsgnTDAQAEEDERAQESQQMID 1290
Cdd:TIGR02168 876 EALLNERASLEEA---LALLRSELEELSEELRELESKRSELRRELEEL---REKLAQLELRLEGLEVRID 939
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
599-1306 |
5.14e-20 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 97.06 E-value: 5.14e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 599 QQAMEELKVsFSKGIGTDSAEFAELKTQIERLRLDYQHEIE--SLQS-KQDSERSAHAKEMETMQAKLMKIIKEKeDSLE 675
Cdd:TIGR02169 173 EKALEELEE-VEENIERLDLIIDEKRQQLERLRREREKAERyqALLKeKREYEGYELLKEKEALERQKEAIERQL-ASLE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 676 AVKARLDSAEDQHLVEMEDTLNKLQEAEIKVKELevlqakyTEQSEVignftsqlsAVKEKLLDLDALRkANSEGKLELe 755
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLLEELNKKIKDL-------GEEEQL---------RVKEKIGELEAEI-ASLERSIAE- 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 756 tLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQ 835
Cdd:TIGR02169 313 -KERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 836 TRMQDTVNKLH-------QKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQL 908
Cdd:TIGR02169 392 EKLEKLKREINelkreldRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 909 TKMNDELRLKERSVEELQLKLTKANENAS--------------FLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLE 974
Cdd:TIGR02169 472 YDLKEEYDRVEKELSKLQRELAEAEAQARaseervrggraveeVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNRLNN 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 975 LEKKMETSYNQCQDLkAKYEKASSET-----KTKHEEILQNLQKM---------LADTEDKLKAA-------------QE 1027
Cdd:TIGR02169 552 VVVEDDAVAKEAIEL-LKRRKAGRATflplnKMRDERRDLSILSEdgvigfavdLVEFDPKYEPAfkyvfgdtlvvedIE 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1028 ANRDLM-------------------------QDMEELKTQADKAKAAQTAED----------AMQIMEQMTKEKTETLAS 1072
Cdd:TIGR02169 631 AARRLMgkyrmvtlegelfeksgamtggsraPRGGILFSRSEPAELQRLRERleglkrelssLQSELRRIENRLDELSQE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1073 LEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGR 1152
Cdd:TIGR02169 711 LSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH 790
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1153 TR-DEVTSH-QKLEEERSVLNNQLLEMKKRES-----------------EFRKDADEEKASLQKSISLTSALLTEKDAEL 1213
Cdd:TIGR02169 791 SRiPEIQAElSKLEEEVSRIEARLREIEQKLNrltlekeylekeiqelqEQRIDLKEQIKSIEKEIENLNGKKEELEEEL 870
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1214 EKLRNEVTVLRGENATAKS----LHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQQMI 1289
Cdd:TIGR02169 871 EELEAALRDLESRLGDLKKerdeLEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEE 950
|
810
....*....|....*..
gi 1907165148 1290 DFLNSVIVDLQRKNQDL 1306
Cdd:TIGR02169 951 LSLEDVQAELQRVEEEI 967
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
356-1128 |
2.19e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 91.66 E-value: 2.19e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 356 LKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHdqhvLELEAKMDQLRTMVEAADREKVELLNQLEEEKR 435
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEV----SELEEEIEELQKELYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 436 KVEDLQFRVEEESITKGDLEQKSpiSEDPENVATVSEKsrIMELEKDLALRAQEVAELRRRLESSKppgdvdmslSLLQE 515
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKL--DELAEELAELEEK--LEELKEELESLEAELEELEAELEELE---------SRLEE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 516 ISALQEKLEAIHTDHQGEMTSLKEHFGAREEafqkEIKALHTATEKLSKENESLRSKLDHANKEnsdvialwksKLETAI 595
Cdd:TIGR02168 377 LEEQLETLRSKVAQLELQIASLNNEIERLEA----RLERLEDRRERLQQEIEELLKKLEEAELK----------ELQAEL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 596 ASHQQAMEELKVSFSKGIgTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERS----------------AHAKEMETM 659
Cdd:TIGR02168 443 EELEEELEELQEELERLE-EALEELREELEEAEQALDAAERELAQLQARLDSLERlqenlegfsegvkallKNQSGLSGI 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 660 QAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDT--------------------LNKLQEAEIKVKELEVLQA----- 714
Cdd:TIGR02168 522 LGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAakkaiaflkqnelgrvtflpLDSIKGTEIQGNDREILKNiegfl 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 715 -------KYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEG----KLELETLR-------------QQLEGAEKQIKN 770
Cdd:TIGR02168 602 gvakdlvKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGyrivTLDGDLVRpggvitggsaktnSSILERRREIEE 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 771 LETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEE 850
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 851 QFNVLSSELEKLRENLTDMEAKfkekddredqlvkaKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLT 930
Cdd:TIGR02168 762 EIEELEERLEEAEEELAEAEAE--------------IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLE 827
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 931 KANENASFLQKSIGEVTLKAEQSQQQAARkheeeKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSEtktkHEEILQN 1010
Cdd:TIGR02168 828 SLERRIAATERRLEDLEEQIEELSEDIES-----LAAEIEELEELIEELESELEALLNERASLEEALAL----LRSELEE 898
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1011 LQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKA------AQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQ 1084
Cdd:TIGR02168 899 LSEELRELESKRSELRRELEELREKLAQLELRLEGLEVridnlqERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLE 978
|
810 820 830 840
....*....|....*....|....*....|....*....|....
gi 1907165148 1085 NELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQA 1128
Cdd:TIGR02168 979 NKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEA 1022
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
352-958 |
5.25e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 90.50 E-value: 5.25e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 352 LQEALKEKQQHIEQLLAERDLERAEVAKATshvgEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADrekvellNQLE 431
Cdd:TIGR02168 335 LAEELAELEEKLEELKEELESLEAELEELE----AELEELESRLEELEEQLETLRSKVAQLELQIASLN-------NEIE 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 432 EEKRKVEDLQFRVEEESITKGDLEQKSPISEDPENVATVSEKSR-IMELEKDLALRAQEVAELRRRLESSKPpgDVDMSL 510
Cdd:TIGR02168 404 RLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEeLEELQEELERLEEALEELREELEEAEQ--ALDAAE 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 511 SLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREE--AFQKEIKALHTATEKLSKENES-LRSKLDH-----ANKENSD 582
Cdd:TIGR02168 482 RELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGlsGILGVLSELISVDEGYEAAIEAaLGGRLQAvvvenLNAAKKA 561
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 583 VIALWKSK--------LETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERL---RLDYQHEIESLQSKQDSERSA 651
Cdd:TIGR02168 562 IAFLKQNElgrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyLLGGVLVVDDLDNALELAKKL 641
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 652 HAKEMetmqaklmkIIKEKEDSLEAVKARLDSAEDQHLV------EMEDTLNKLQEAEIKVKELEV-LQAKYTEQSEVIG 724
Cdd:TIGR02168 642 RPGYR---------IVTLDGDLVRPGGVITGGSAKTNSSilerrrEIEELEEKIEELEEKIAELEKaLAELRKELEELEE 712
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 725 NFTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLN 804
Cdd:TIGR02168 713 ELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE 792
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 805 QVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLV 884
Cdd:TIGR02168 793 QLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE 872
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907165148 885 KAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAA 958
Cdd:TIGR02168 873 SELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
478-1261 |
5.40e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 87.42 E-value: 5.40e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 478 ELEKDL------ALRAQEVAELRRRLEsskppgDVDMSLSLLqEISALQEKLEAIhtdhQGEMTSLKEhfgaREEAFQKE 551
Cdd:TIGR02168 197 ELERQLkslerqAEKAERYKELKAELR------ELELALLVL-RLEELREELEEL----QEELKEAEE----ELEELTAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 552 IKALHTATEKLSKENESLRSKLDHANKENSDVIALwKSKLETAIASHQQAMEELKVSFSKGigtdSAEFAELKTQIERLR 631
Cdd:TIGR02168 262 LQELEEKLEELRLEVSELEEEIEELQKELYALANE-ISRLEQQKQILRERLANLERQLEEL----EAQLEELESKLDELA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 632 LDY---QHEIESLQSKQDSERSAHAKEMETMQAkLMKIIKEKEDSLEAVKARLDSAEDQhlveMEDTLNKLQEAEIKVKE 708
Cdd:TIGR02168 337 EELaelEEKLEELKEELESLEAELEELEAELEE-LESRLEELEEQLETLRSKVAQLELQ----IASLNNEIERLEARLER 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 709 LEVLQAKYTEQSEVIGNfTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKE 788
Cdd:TIGR02168 412 LEDRRERLQQEIEELLK-KLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQAR 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 789 ---LQEKELVLTGLQDSLNQVNQVKETLEKELQTLKE--KFASTSEEAVSA--QTRMQD-TVNKLHQKEEQFNVLSSELE 860
Cdd:TIGR02168 491 ldsLERLQENLEGFSEGVKALLKNQSGLSGILGVLSEliSVDEGYEAAIEAalGGRLQAvVVENLNAAKKAIAFLKQNEL 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 861 --------------KLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMkmSG----DNSSQLTKMNDELRLKERSV 922
Cdd:TIGR02168 571 grvtflpldsikgtEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLL--GGvlvvDDLDNALELAKKLRPGYRIV 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 923 eelqlklTKANE--NASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLelekkmetsynqcqdlkakyekassET 1000
Cdd:TIGR02168 649 -------TLDGDlvRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIA-------------------------EL 696
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1001 KTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQdmeelkTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTN 1080
Cdd:TIGR02168 697 EKALAELRKELEELEEELEQLRKELEELSRQISA------LRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERL 770
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1081 ARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEvtsH 1160
Cdd:TIGR02168 771 EEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQ---I 847
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1161 QKLEEERSVLNNQLLEMKKRESEFRKDAD---EEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGE-NATAKSLHSV 1236
Cdd:TIGR02168 848 EELSEDIESLAAEIEELEELIEELESELEallNERASLEEALALLRSELEELSEELRELESKRSELRRElEELREKLAQL 927
|
810 820
....*....|....*....|....*
gi 1907165148 1237 VQTLEsdkvKLELKVKNLELQLKEN 1261
Cdd:TIGR02168 928 ELRLE----GLEVRIDNLQERLSEE 948
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
404-1200 |
5.41e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.95 E-value: 5.41e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 404 ELEAKMDQLRTMVEAADREKvELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKSPISEDPENVATVSEK-SRIMELEKD 482
Cdd:TIGR02168 197 ELERQLKSLERQAEKAERYK-ELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELeEKLEELRLE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 483 LALRAQEVAELRRRLesskppgdvdmsLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALhTATEKL 562
Cdd:TIGR02168 276 VSELEEEIEELQKEL------------YALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA-EELAEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 563 SKENESLRSKLDHANKENSDVIALWKSkLETAIASHQQAMEELKvsfskgigtdsAEFAELKTQIERLRLDYQ------H 636
Cdd:TIGR02168 343 EEKLEELKEELESLEAELEELEAELEE-LESRLEELEEQLETLR-----------SKVAQLELQIASLNNEIErlearlE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 637 EIESLQSKQDSERSAHAKEMETMQ--------AKLMKIIKEKEDSLEAVKARLDSAEDQ---HLVEMEDTLNKLQEAEIK 705
Cdd:TIGR02168 411 RLEDRRERLQQEIEELLKKLEEAElkelqaelEELEEELEELQEELERLEEALEELREEleeAEQALDAAERELAQLQAR 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 706 VKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELETL----RQQL--EGAEKQIKNLETERNAES 779
Cdd:TIGR02168 491 LDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAAlggrLQAVvvENLNAAKKAIAFLKQNEL 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 780 SKANSitkelqekeLVLTGLQDSLNQVN--QVKETLEKELQTLKE--KFASTSEEAVS---AQTRMQDTV----NKLHQK 848
Cdd:TIGR02168 571 GRVTF---------LPLDSIKGTEIQGNdrEILKNIEGFLGVAKDlvKFDPKLRKALSyllGGVLVVDDLdnalELAKKL 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 849 EEQFNVLS---------------------------SELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMS 901
Cdd:TIGR02168 642 RPGYRIVTldgdlvrpggvitggsaktnssilerrREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKEL 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 902 GDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARkheeekkeLEEKLLELEKKMET 981
Cdd:TIGR02168 722 EELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE--------AEAEIEELEAQIEQ 793
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 982 SYNQCQDLKAKYEKASSETKTKHEEiLQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQtaEDAMQIMEQ 1061
Cdd:TIGR02168 794 LKEELKALREALDELRAELTLLNEE-AANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI--EELEELIEE 870
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1062 MTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQE 1141
Cdd:TIGR02168 871 LESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907165148 1142 ENVKLAEELGRTRDEvtSHQKLEEERSVLNNQLLEM--------------KKRESEFRK---DADEEKASLQKSIS 1200
Cdd:TIGR02168 951 LTLEEAEALENKIED--DEEEARRRLKRLENKIKELgpvnlaaieeyeelKERYDFLTAqkeDLTEAKETLEEAIE 1024
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
355-1182 |
1.24e-15 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 82.81 E-value: 1.24e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 355 ALKEKQQHIEQ--LLAERDLERAEVAKATSHVGEIEQELAlardghdqhvlELEAKMDQLRTMVEAAdrekVELLNQLEE 432
Cdd:TIGR02169 215 ALLKEKREYEGyeLLKEKEALERQKEAIERQLASLEEELE-----------KLTEEISELEKRLEEI----EQLLEELNK 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 433 E-KRKVEDLQFRVEEE-SITKGDLEQ-KSPISEDPENVATVSEKSRIMELEKDLALRaqEVAELRRRLESSKppGDVDms 509
Cdd:TIGR02169 280 KiKDLGEEEQLRVKEKiGELEAEIASlERSIAEKERELEDAEERLAKLEAEIDKLLA--EIEELEREIEEER--KRRD-- 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 510 lSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGA------REEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDV 583
Cdd:TIGR02169 354 -KLTEEYAELKEELEDLRAELEEVDKEFAETRDElkdyreKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGI 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 584 ---IALWKSKLETAIASHQQAMEELKvSFSKGIGTDSAEFAELKTQIERLrldyQHEIESLQSKQDsERSAHAKEMETMQ 660
Cdd:TIGR02169 433 eakINELEEEKEDKALEIKKQEWKLE-QLAADLSKYEQELYDLKEEYDRV----EKELSKLQRELA-EAEAQARASEERV 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 661 AKLMKIIKEKEDSLEAVK---ARLDSAEDQHLVEMEDTL-NKLQEAeikVKELEVLQAKYTE--QSEVIGNFTS-QLSAV 733
Cdd:TIGR02169 507 RGGRAVEEVLKASIQGVHgtvAQLGSVGERYATAIEVAAgNRLNNV---VVEDDAVAKEAIEllKRRKAGRATFlPLNKM 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 734 KEKLLDLDALRKANSEG-KLELETLRQQLEGAEKQI-------KNLETERNAESS-KANSITKELQEKELVLTG------ 798
Cdd:TIGR02169 584 RDERRDLSILSEDGVIGfAVDLVEFDPKYEPAFKYVfgdtlvvEDIEAARRLMGKyRMVTLEGELFEKSGAMTGgsrapr 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 799 --------LQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDME 870
Cdd:TIGR02169 664 ggilfsrsEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELE 743
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 871 AKFKEKDdredqlvkakEKLENDIAEimkmsgdnssqLTKMNDELRLKERSVEELQLKLT--KANENASFLQKSIGEVT- 947
Cdd:TIGR02169 744 EDLSSLE----------QEIENVKSE-----------LKELEARIEELEEDLHKLEEALNdlEARLSHSRIPEIQAELSk 802
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 948 LKAEQSQQQAARKH-EEEKKELEEKLLELEKKMETSYNQCQDLKAKyekassetKTKHEEILQNLQKMLADTEDKLKAAQ 1026
Cdd:TIGR02169 803 LEEEVSRIEARLREiEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ--------IKSIEKEIENLNGKKEELEEELEELE 874
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1027 EANRDLMQDMEELKTQADKAKAAqtaedamqiMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENnLKTVEELNKSKE 1106
Cdd:TIGR02169 875 AALRDLESRLGDLKKERDELEAQ---------LRELERKIEELEAQIEKKRKRLSELKAKLEALEEE-LSEIEDPKGEDE 944
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1107 LLSVENQKMEEFKKEIETLKQAaaqksqqLSALQEENVK----LAEELGRTRDEVTSHQKLEEERSVLNNQL--LEMKKR 1180
Cdd:TIGR02169 945 EIPEEELSLEDVQAELQRVEEE-------IRALEPVNMLaiqeYEEVLKRLDELKEKRAKLEEERKAILERIeeYEKKKR 1017
|
..
gi 1907165148 1181 ES 1182
Cdd:TIGR02169 1018 EV 1019
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
674-1226 |
1.35e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.68 E-value: 1.35e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 674 LEAVKARLDSAEDqHLVEMEDTLNKLQ-EAEIKVK------ELEVLQAKYteqsevignftsQLSAVKEKLLDLDALRKA 746
Cdd:COG1196 181 LEATEENLERLED-ILGELERQLEPLErQAEKAERyrelkeELKELEAEL------------LLLKLRELEAELEELEAE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 747 NSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANS-------ITKELQEKELVLTGLQDSLNQVNQVKETLEKELQT 819
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEELRLELEELELELEEaqaeeyeLLAELARLEQDIARLEERRRELEERLEELEEELAE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 820 LKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMK 899
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 900 MSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQ--SQQQAARKHEEEKKELEEKLLELEK 977
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAllELLAELLEEAALLEAALAELLEELA 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 978 KMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQ----KMLADTEDKLKAAQEA------NRDLMQDMEELKTQADKAK 1047
Cdd:COG1196 488 EAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLagavAVLIGVEAAYEAALEAalaaalQNIVVEDDEVAAAAIEYLK 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1048 AAQTAEDAMQIMEQMTKEKTETLASL------------EDTKQTNARLQNELDTLKENNLKT--------------VEEL 1101
Cdd:COG1196 568 AAKAGRATFLPLDKIRARAALAAALArgaigaavdlvaSDLREADARYYVLGDTLLGRTLVAarleaalrravtlaGRLR 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1102 NKSKELLSVENQKMEE---FKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMK 1178
Cdd:COG1196 648 EVTLEGEGGSAGGSLTggsRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 1907165148 1179 KRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGE 1226
Cdd:COG1196 728 EQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
420-1260 |
5.64e-15 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 80.79 E-value: 5.64e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 420 DREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKSPISEDPENVATVSEKSRIMELEKDLALRAQEVAELRRRLES 499
Cdd:pfam02463 168 KRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLR 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 500 SKppgdVDMSLSLLQEISALQEKLEAIHTDHQGEMtslkehfgaREEAFQKEIKALHTATEKLSKENESLRSKLDHANKE 579
Cdd:pfam02463 248 DE----QEEIESSKQEIEKEEEKLAQVLKENKEEE---------KEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 580 NSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETM 659
Cdd:pfam02463 315 KLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 660 QAKLMKIIKEKEDSLEAVKARldSAEDQHLVEMEDTLNKLQEAEikvKELEVLQAKYTEQSEVIgnftsQLSAVKEKLLD 739
Cdd:pfam02463 395 EELELKSEEEKEAQLLLELAR--QLEDLLKEEKKEELEILEEEE---ESIELKQGKLTEEKEEL-----EKQELKLLKDE 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 740 LDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLqdslnqvnQVKETLEKELQT 819
Cdd:pfam02463 465 LELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRI--------ISAHGRLGDLGV 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 820 LKEKFASTSEEAVSAQtRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMK 899
Cdd:pfam02463 537 AVENYKVAISTAVIVE-VSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEA 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 900 MSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKheeeKKELEEKLLELEKKM 979
Cdd:pfam02463 616 DEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELL----EIQELQEKAESELAK 691
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 980 ETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDK----LKAAQEANRDLMQDMEELKTQADKAKAAQTAEDA 1055
Cdd:pfam02463 692 EEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKineeLKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSL 771
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1056 MQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQ 1135
Cdd:pfam02463 772 KEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKL 851
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1136 LSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALL-TEKDAELE 1214
Cdd:pfam02463 852 AEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERiKEEAEILL 931
|
810 820 830 840
....*....|....*....|....*....|....*....|....*.
gi 1907165148 1215 KLRNEVTVLRGENATAKSLhsvvqtLESDKVKLELKVKNLELQLKE 1260
Cdd:pfam02463 932 KYEEEPEELLLEEADEKEK------EENNKEEEEERNKRLLLAKEE 971
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
624-1323 |
1.53e-14 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 79.01 E-value: 1.53e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 624 KTQIERLRLDYQHEIESLQSKQDSERSAHAKE-------METMQAKLMKIIKEKeDSLEAVKARLDSAEDQHLVEMEDTL 696
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQkfylrqsVIDLQTKLQEMQMER-DAMADIRRRESQSQEDLRNQLQNTV 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 697 NKLQEAE-IKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDAL--RKANSEGKLELETLRQQLEGAEKQIKNLET 773
Cdd:pfam15921 152 HELEAAKcLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEAsgKKIYEHDSMSTMHFRSLGSAISKILRELDT 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 774 ERN-------AESSKANSITKELQEK-ELVLTGLQDslnQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQ----DT 841
Cdd:pfam15921 232 EISylkgrifPVEDQLEALKSESQNKiELLLQQHQD---RIEQLISEHEVEITGLTEKASSARSQANSIQSQLEiiqeQA 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 842 VNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEK-DDREDQLVKAKEKLENDIAE---IMKMSGDNSSQLTKMNDEL-- 915
Cdd:pfam15921 309 RNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKiEELEKQLVLANSELTEARTErdqFSQESGNLDDQLQKLLADLhk 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 916 RLKERSVEELQLKLTKANENASFLqkSIGEVTLKAEQSQQQAARkheeekkeleeklleLEKKMETSYNQCQDlKAKYEK 995
Cdd:pfam15921 389 REKELSLEKEQNKRLWDRDTGNSI--TIDHLRRELDDRNMEVQR---------------LEALLKAMKSECQG-QMERQM 450
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 996 ASSETKTKHEEILQNLQKMLADTEDKL-KAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMqimEQMTKEKTETLASLE 1074
Cdd:pfam15921 451 AAIQGKNESLEKVSSLTAQLESTKEMLrKVVEELTAKKMTLESSERTVSDLTASLQEKERAI---EATNAEITKLRSRVD 527
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1075 DTKQTNARLQNELDTLKenNLKTveELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTR 1154
Cdd:pfam15921 528 LKLQELQHLKNEGDHLR--NVQT--ECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRR 603
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1155 DEVTSHQKLEEERsvlnnqllEMKKRESEFR-KDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGE-NATAKS 1232
Cdd:pfam15921 604 LELQEFKILKDKK--------DAKIRELEARvSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNElNSLSED 675
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1233 LHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQQMidfLNSVIVDLQRKNQDLKMKVEM 1312
Cdd:pfam15921 676 YEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMG---MQKQITAKRGQIDALQSKIQF 752
|
730
....*....|.
gi 1907165148 1313 MSEAALNGNGE 1323
Cdd:pfam15921 753 LEEAMTNANKE 763
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
344-1126 |
4.19e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 77.80 E-value: 4.19e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 344 RKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQeLALARDGHDQH--VLELEAKMDQLRTMVEAADR 421
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ-LRVKEKIGELEaeIASLERSIAEKERELEDAEE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 422 EKVELLNQLEEEKRKVEDLQFRVEEESItkgdleQKSPISEDPENVATVSEK--SRIMELEKDLALRAQEVAELRRRLES 499
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEIEELEREIEEERK------RRDKLTEEYAELKEELEDlrAELEEVDKEFAETRDELKDYREKLEK 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 500 SKPPGDvdmslSLLQEISALQEKLEAIHT---DHQGEMTSLKE---HFGAREEAFQKEIKA----LHTATEKLSKENESL 569
Cdd:TIGR02169 397 LKREIN-----ELKRELDRLQEELQRLSEelaDLNAAIAGIEAkinELEEEKEDKALEIKKqewkLEQLAADLSKYEQEL 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 570 ---RSKLDHANKENSDVialwKSKLETAIASHQQAMEELKVSFS--KGIGTDSAEFAELKTQIERLRLDYQHEIESLQSK 644
Cdd:TIGR02169 472 ydlKEEYDRVEKELSKL----QRELAEAEAQARASEERVRGGRAveEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGN 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 645 -------QDSERSAHA----KEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQ--HLVEMEDtlnKLQEAEIKVKELEV 711
Cdd:TIGR02169 548 rlnnvvvEDDAVAKEAiellKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFavDLVEFDP---KYEPAFKYVFGDTL 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 712 LQAKYTEQSEVIGNFtsQLSAVKEKLLD--------LDALRKANS---EGKLELETLRQQLEGAEKQIKNLETERNAESS 780
Cdd:TIGR02169 625 VVEDIEAARRLMGKY--RMVTLEGELFEksgamtggSRAPRGGILfsrSEPAELQRLRERLEGLKRELSSLQSELRRIEN 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 781 KANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQfnvlsseLE 860
Cdd:TIGR02169 703 RLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEED-------LH 775
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 861 KLRENLTDMEAkfKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQ 940
Cdd:TIGR02169 776 KLEEALNDLEA--RLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIE 853
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 941 KSIGEVTLKAEQSQQQAARKHeeekkeleekllelekkmetsyNQCQDLKAKYEKASSETKtkheeilqNLQKMLADTED 1020
Cdd:TIGR02169 854 KEIENLNGKKEELEEELEELE----------------------AALRDLESRLGDLKKERD--------ELEAQLRELER 903
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1021 KLkaaQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEE 1100
Cdd:TIGR02169 904 KI---EELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQE 980
|
810 820 830
....*....|....*....|....*....|....*.
gi 1907165148 1101 ----------LNKSKELLSVENQKMEEFKKEIETLK 1126
Cdd:TIGR02169 981 yeevlkrldeLKEKRAKLEEERKAILERIEEYEKKK 1016
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
530-1192 |
5.46e-14 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 77.49 E-value: 5.46e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 530 HQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSF 609
Cdd:PTZ00121 1065 HVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEE 1144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 610 SKGigTDSAEFAELKTQIERLRldyqhEIESLQSKQDSERSAHAKEMEtmQAKLMKIIKEKEDSLEAVKAR----LDSAE 685
Cdd:PTZ00121 1145 ARK--AEDAKRVEIARKAEDAR-----KAEEARKAEDAKKAEAARKAE--EVRKAEELRKAEDARKAEAARkaeeERKAE 1215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 686 DQHLVEMEDTLNKLQEAE-IKVKELEVLQAKYTEQSEVIGNFTSQLSA---VKEKLLDLDALRKANSEGKLELETLRQQL 761
Cdd:PTZ00121 1216 EARKAEDAKKAEAVKKAEeAKKDAEEAKKAEEERNNEEIRKFEEARMAhfaRRQAAIKAEEARKADELKKAEEKKKADEA 1295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 762 EGAEKQIKNLETERNAESS-KANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQ- 839
Cdd:PTZ00121 1296 KKAEEKKKADEAKKKAEEAkKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEe 1375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 840 -----DTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDE 914
Cdd:PTZ00121 1376 akkkaDAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEE 1455
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 915 LRLKERSVE--ELQLKLTKANENASFLQKSiGEVTLKAEQSQQQA--ARKHEEEKKELEEKLLELEKKMETSYNQCQDLK 990
Cdd:PTZ00121 1456 AKKAEEAKKkaEEAKKADEAKKKAEEAKKA-DEAKKKAEEAKKKAdeAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAK 1534
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 991 AKYEKASSETKTKHEEILQnlQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETL 1070
Cdd:PTZ00121 1535 KADEAKKAEEKKKADELKK--AEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1071 ASLEDTKQTNARLQNE---------LDTLKENNLKTVEELNKSKELLSV----ENQKMEEFKKEIETLKQAAAQKSQQLS 1137
Cdd:PTZ00121 1613 KKAEEAKIKAEELKKAeeekkkveqLKKKEAEEKKKAEELKKAEEENKIkaaeEAKKAEEDKKKAEEAKKAEEDEKKAAE 1692
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165148 1138 AL--QEENVKLAEELGRTR-DEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEK 1192
Cdd:PTZ00121 1693 ALkkEAEEAKKAEELKKKEaEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
354-899 |
9.74e-14 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 76.26 E-value: 9.74e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 354 EALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAkmdqLRTMVEAADREKVELLNQLEEE 433
Cdd:PRK03918 182 EKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE----LKEEIEELEKELESLEGSKRKL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 434 KRKVEDLQFRVEEESITKGDLEQKSPISEDPENVATVSEK---------SRIMELEKDLALRAQEVAELRRRLEssKPPG 504
Cdd:PRK03918 258 EEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKlsefyeeylDELREIEKRLSRLEEEINGIEERIK--ELEE 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 505 DVDMSLSLLQEISALQEKLEAIHTDHQ---------GEMTSLKEHFGARE-EAFQKEIKALHTATEKLSKENESLRSKld 574
Cdd:PRK03918 336 KEERLEELKKKLKELEKRLEELEERHElyeeakakkEELERLKKRLTGLTpEKLEKELEELEKAKEEIEEEISKITAR-- 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 575 hankensdvialwKSKLETAIASHQQAMEELKVsfskgigtdsaefAELKTQIERLRLDYQHEIESLqskqdSERSAHAK 654
Cdd:PRK03918 414 -------------IGELKKEIKELKKAIEELKK-------------AKGKCPVCGRELTEEHRKELL-----EEYTAELK 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 655 EMEtmqaKLMKIIKEKEDSLEAVKARLDS--AEDQHLVEMEDTLNKLQEAEIKVKE--LEVLQAKYTEQSEV---IGNFT 727
Cdd:PRK03918 463 RIE----KELKEIEEKERKLRKELRELEKvlKKESELIKLKELAEQLKELEEKLKKynLEELEKKAEEYEKLkekLIKLK 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 728 SQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLnqvn 807
Cdd:PRK03918 539 GEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKEL---- 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 808 qvkETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNV-----LSSELEKLRENLTDMEAKFKEKDDREDQ 882
Cdd:PRK03918 615 ---EREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEeeyeeLREEYLELSRELAGLRAELEELEKRREE 691
|
570
....*....|....*..
gi 1907165148 883 LVKAKEKLENDIAEIMK 899
Cdd:PRK03918 692 IKKTLEKLKEELEEREK 708
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
211-271 |
1.77e-13 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 75.11 E-value: 1.77e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907165148 211 LKVGDRVLVGGTKaGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 271
Cdd:COG5244 4 LSVNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIF 63
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
657-1323 |
3.89e-13 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 74.33 E-value: 3.89e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 657 ETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHlvemedtlNKLQEAEikvKELEVLQAKYTEQSEVIGNFTSQLSAVKEK 736
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIE--------ELIKEKE---KELEEVLREINEISSELPELREELEKLEKE 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 737 LLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLET---ERNAESSKANSITKELQEkelvLTGLQDSLNQVNQVKETL 813
Cdd:PRK03918 230 VKELEELKEEIEELEKELESLEGSKRKLEEKIRELEErieELKKEIEELEEKVKELKE----LKEKAEEYIKLSEFYEEY 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 814 EKELQTLKEKFASTSEEAVSAQTRMQDtvnkLHQKEEQFNVLSSELEKLRENLTDMEaKFKEKDDREDQLVKAKEKLENd 893
Cdd:PRK03918 306 LDELREIEKRLSRLEEEINGIEERIKE----LEEKEERLEELKKKLKELEKRLEELE-ERHELYEEAKAKKEELERLKK- 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 894 iaeimkmsgdnssqltkmndelRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLL 973
Cdd:PRK03918 380 ----------------------RLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGK 437
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 974 ELEKKMETSYNQCQDLKAKYE---KASSETKTKHEEILQNLQKMLADTEDKLKAAQE--ANRDLMQDMEELKTQADKAKA 1048
Cdd:PRK03918 438 CPVCGRELTEEHRKELLEEYTaelKRIEKELKEIEEKERKLRKELRELEKVLKKESEliKLKELAEQLKELEEKLKKYNL 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1049 aqtaedamqimEQMTKEKTEtlasLEDTKQTNARLQNELDTLKEnNLKTVEELNKSKELLSVENQKMEEFKKEIETlkqa 1128
Cdd:PRK03918 518 -----------EELEKKAEE----YEKLKEKLIKLKGEIKSLKK-ELEKLEELKKKLAELEKKLDELEEELAELLK---- 577
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1129 aaqksqqlsALQEENVKLAEELGRTRDEvtshqkLEEersvLNNQLLEMKKRESEFRkDADEEKASLQKSISLTSALLTE 1208
Cdd:PRK03918 578 ---------ELEELGFESVEELEERLKE------LEP----FYNEYLELKDAEKELE-REEKELKKLEEELDKAFEELAE 637
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1209 KDAELEKLRNEVTVLRGENATAKSlhsvvQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQQM 1288
Cdd:PRK03918 638 TEKRLEELRKELEELEKKYSEEEY-----EELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKE 712
|
650 660 670
....*....|....*....|....*....|....*
gi 1907165148 1289 IDFLNSVIVDLQRKNQDLKMKVEMMSEAALNGNGE 1323
Cdd:PRK03918 713 LEKLEKALERVEELREKVKKYKALLKERALSKVGE 747
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
753-1268 |
3.93e-13 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 74.29 E-value: 3.93e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 753 ELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAV 832
Cdd:TIGR04523 41 KLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKN 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 833 SAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMN 912
Cdd:TIGR04523 121 KLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 913 ---DELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHeeekkeleekllelekkmetsyNQCQDL 989
Cdd:TIGR04523 201 lllSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQ----------------------TQLNQL 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 990 KAKYEKASSETKTKHEEILQNLQKmLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTet 1069
Cdd:TIGR04523 259 KDEQNKIKKQLSEKQKELEQNNKK-IKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNK-- 335
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1070 laSLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETL--------------KQAAAQKSQQ 1135
Cdd:TIGR04523 336 --IISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLesqindleskiqnqEKLNQQKDEQ 413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1136 LSALQEENVKLAEELGRTRDEVTSHQK----LEEERSVLNNQLLEMKKRESEFRKDADEEKAS---LQKSISLTSALLTE 1208
Cdd:TIGR04523 414 IKKLQQEKELLEKEIERLKETIIKNNSeikdLTNQDSVKELIIKNLDNTRESLETQLKVLSRSinkIKQNLEQKQKELKS 493
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907165148 1209 KDAELEKLRNEVTVLRGENATAK----SLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSS 1268
Cdd:TIGR04523 494 KEKELKKLNEEKKELEEKVKDLTkkisSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKE 557
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
351-897 |
6.43e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.82 E-value: 6.43e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 351 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDG---HDQHVLELEAKMDQLRTMVEAADREKVELL 427
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEeyeLLAELARLEQDIARLEERRRELEERLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 428 NQLEEEKRKVEDLQFRVEEESITKGDLEQKSPISE----DPENVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPp 503
Cdd:COG1196 323 EELAELEEELEELEEELEELEEELEEAEEELEEAEaelaEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ- 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 504 gdvdmSLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDV 583
Cdd:COG1196 402 -----LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 584 IALWKSKLETAIAS----HQQAMEELKVSFSKGIGtdsaefaeLKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETM 659
Cdd:COG1196 477 AALAELLEELAEAAarllLLLEAEADYEGFLEGVK--------AALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAAL 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 660 QAKLMKIIKEKEDSLEAVKARLDS-AEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLL 738
Cdd:COG1196 549 QNIVVEDDEVAAAAIEYLKAAKAGrATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 739 DLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQ 818
Cdd:COG1196 629 AARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907165148 819 TLKEKFASTSEEAVSAQtrmqdtvnKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEI 897
Cdd:COG1196 709 LAEAEEERLEEELEEEA--------LEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
728-1286 |
7.18e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.55 E-value: 7.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 728 SQLSAVKEKLLDLDALRKansEGKLELETLRQQLEGAEKQIKNLETERNAESS----KANSITKELQEKELVLTGLQDSL 803
Cdd:TIGR02168 179 RKLERTRENLDRLEDILN---ELERQLKSLERQAEKAERYKELKAELRELELAllvlRLEELREELEELQEELKEAEEEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 804 NQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQL 883
Cdd:TIGR02168 256 EELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDEL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 884 VKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSI----GEVTLKAEQSQQQAAR 959
Cdd:TIGR02168 336 AEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIaslnNEIERLEARLERLEDR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 960 KHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTkHEEILQNLQKMLADTEDKLKAAQE------ANRDLM 1033
Cdd:TIGR02168 416 RERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELER-LEEALEELREELEEAEQALDAAERelaqlqARLDSL 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1034 QDMEELKTQADKAKAAQ------------------------------------------TAEDAMQIMEQMTKEKTETLA 1071
Cdd:TIGR02168 495 ERLQENLEGFSEGVKALlknqsglsgilgvlselisvdegyeaaieaalggrlqavvveNLNAAKKAIAFLKQNELGRVT 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1072 SLE---------------------------------------------------DTKQTNARLQNELDtlKENNLKTVE- 1099
Cdd:TIGR02168 575 FLPldsikgteiqgndreilkniegflgvakdlvkfdpklrkalsyllggvlvvDDLDNALELAKKLR--PGYRIVTLDg 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1100 -------------------ELNKSKELLSVEnQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSH 1160
Cdd:TIGR02168 653 dlvrpggvitggsaktnssILERRREIEELE-EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISAL 731
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1161 QKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAK----SLHSV 1236
Cdd:TIGR02168 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRealdELRAE 811
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1237 VQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQ 1286
Cdd:TIGR02168 812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI 861
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
406-1201 |
7.29e-13 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 73.61 E-value: 7.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 406 EAKMDQLRTMVEAADREKVELLnqLEEEKRKVEDLQFRVEEESitkgDLEQKSPISEDpENVATVSEKSRIMELEKDLAL 485
Cdd:pfam15921 58 EVELDSPRKIIAYPGKEHIERV--LEEYSHQVKDLQRRLNESN----ELHEKQKFYLR-QSVIDLQTKLQEMQMERDAMA 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 486 -----RAQEVAELRRRLESSKPPGDVDMSLS--LLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEI------ 552
Cdd:pfam15921 131 dirrrESQSQEDLRNQLQNTVHELEAAKCLKedMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIyehdsm 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 553 -----KALHTATEKLSKENESLRSKLdhankenSDVIALWKSKLETAIASHQQAMEELkvsfskgigtdsaeFAELKTQI 627
Cdd:pfam15921 211 stmhfRSLGSAISKILRELDTEISYL-------KGRIFPVEDQLEALKSESQNKIELL--------------LQQHQDRI 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 628 ERLRLDYQHEIESLQSKQDSERS---AHAKEMETMQ-------AKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLN 697
Cdd:pfam15921 270 EQLISEHEVEITGLTEKASSARSqanSIQSQLEIIQeqarnqnSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEK 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 698 KLQEAEIKVKELEVLQAKYTEQSeviGNFTSQLSAV------KEKLLDLDA-----LRKANSEGKLELETLRQQLEGAEK 766
Cdd:pfam15921 350 QLVLANSELTEARTERDQFSQES---GNLDDQLQKLladlhkREKELSLEKeqnkrLWDRDTGNSITIDHLRRELDDRNM 426
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 767 QIKNLETERNAESSKANSitkELQEKELVLTGLQDSLNQVNQVKETLEKELQTLK---EKFASTSEEAVSAQTRMQDTVN 843
Cdd:pfam15921 427 EVQRLEALLKAMKSECQG---QMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRkvvEELTAKKMTLESSERTVSDLTA 503
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 844 KLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLE---------NDIAEIMKMSGDNSSQLT----- 909
Cdd:pfam15921 504 SLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEalklqmaekDKVIEILRQQIENMTQLVgqhgr 583
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 910 --------KMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQ-QAARKHEEEKKELEEKLLELEKKME 980
Cdd:pfam15921 584 tagamqveKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLvNAGSERLRAVKDIKQERDQLLNEVK 663
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 981 TSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMladtEDKLKAAQ---EANRDLMQDMEELKTQADKAkaaqtaedAMQ 1057
Cdd:pfam15921 664 TSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKL----KMQLKSAQselEQTRNTLKSMEGSDGHAMKV--------AMG 731
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1058 IMEQMTKEKTETLAsledtkqtnarLQNELDTLKEnnlkTVEELNKSKELLSVENQKMeefkkeietlkqaaaqkSQQLS 1137
Cdd:pfam15921 732 MQKQITAKRGQIDA-----------LQSKIQFLEE----AMTNANKEKHFLKEEKNKL-----------------SQELS 779
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907165148 1138 ALQEENVKLAEELGRTRDEvtsHQKLEEErsvLNNQLLEMKKRESEFRKDADEEKASLQKSISL 1201
Cdd:pfam15921 780 TVATEKNKMAGELEVLRSQ---ERRLKEK---VANMEVALDKASLQFAECQDIIQRQEQESVRL 837
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
356-1012 |
7.48e-13 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 73.61 E-value: 7.48e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 356 LKEKQQHIEQLLAERDLE----RAEVAKATSHVGEIEQELAL----ARDGHD---QHVLELEAKMDQLRTmveaadrekv 424
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEitglTEKASSARSQANSIQSQLEIiqeqARNQNSmymRQLSDLESTVSQLRS---------- 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 425 ellnQLEEEKRKVEDlqfrveeesitkgdleqkspisedpenvatvseksRIMELEKDLALRAQEVAELR-RRLESSKPP 503
Cdd:pfam15921 332 ----ELREAKRMYED-----------------------------------KIEELEKQLVLANSELTEARtERDQFSQES 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 504 GDVDmslsllqeiSALQEKLEAIHTdHQGEMTSLKEhfgareeafqkEIKALHTATEKLSKENESLRSKLDHANKENSDV 583
Cdd:pfam15921 373 GNLD---------DQLQKLLADLHK-REKELSLEKE-----------QNKRLWDRDTGNSITIDHLRRELDDRNMEVQRL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 584 IALWKskletAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAhakemETMQAKL 663
Cdd:pfam15921 432 EALLK-----AMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESS-----ERTVSDL 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 664 MKIIKEKEDSLEAVKAR---------LDSAEDQHLVEMEDTLN---------KLQEAEiKVKELEVLQAKYTEQSEVIGN 725
Cdd:pfam15921 502 TASLQEKERAIEATNAEitklrsrvdLKLQELQHLKNEGDHLRnvqtecealKLQMAE-KDKVIEILRQQIENMTQLVGQ 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 726 FTSQLSAVkekLLDLDALRKANSEGKLELETLR-------QQLEGAEKQIKNLETER----NAESSKANSITKELQEKEL 794
Cdd:pfam15921 581 HGRTAGAM---QVEKAQLEKEINDRRLELQEFKilkdkkdAKIRELEARVSDLELEKvklvNAGSERLRAVKDIKQERDQ 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 795 VLTGLQDSLNQVNqvkeTLEKELQTLKEKFASTSEEavsaqtrMQDTVNKLHQkeeQFNVLSSELEKLRENLTDMEAKfk 874
Cdd:pfam15921 658 LLNEVKTSRNELN----SLSEDYEVLKRNFRNKSEE-------METTTNKLKM---QLKSAQSELEQTRNTLKSMEGS-- 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 875 ekddredqlvkakeklendIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQ----KSIGEVTLKA 950
Cdd:pfam15921 722 -------------------DGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKeeknKLSQELSTVA 782
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907165148 951 EQSQQQAA-----RKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQ 1012
Cdd:pfam15921 783 TEKNKMAGelevlRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQ 849
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
624-1255 |
3.49e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 71.22 E-value: 3.49e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 624 KTQIERLRLDYQHEIESLQS----KQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQhLVEMEDTLNKL 699
Cdd:PRK02224 175 RLGVERVLSDQRGSLDQLKAqieeKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEV-LEEHEERREEL 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 700 QEAEikvKELEVLQAKYTEqsevignftsqlsAVKEKlldlDALRKansegklELETLRQQLEGAEKQIKNLETERNAES 779
Cdd:PRK02224 254 ETLE---AEIEDLRETIAE-------------TERER----EELAE-------EVRDLRERLEELEEERDDLLAEAGLDD 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 780 SKANSITKELQEKELVLTGLQDSLNQV-------NQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQF 852
Cdd:PRK02224 307 ADAEAVEARREELEDRDEELRDRLEECrvaaqahNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEI 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 853 NVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAeimkmsgdnssqltkmndELRLKERSVEElqlkltKA 932
Cdd:PRK02224 387 EELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREA------------------ELEATLRTARE------RV 442
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 933 NENASFLqksigEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKT-----KHEEI 1007
Cdd:PRK02224 443 EEAEALL-----EAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAedrieRLEER 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1008 LQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQAD-KAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNE 1086
Cdd:PRK02224 518 REDLEELIAERRETIEEKRERAEELRERAAELEAEAEeKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTL 597
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1087 LDTLkENNLKTVEELN-KSKELLSVENQKMEefkkeietlkqaaaqksqQLSALQEENVKLAEELGRTRDEvTSHQKLEE 1165
Cdd:PRK02224 598 LAAI-ADAEDEIERLReKREALAELNDERRE------------------RLAEKRERKRELEAEFDEARIE-EAREDKER 657
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1166 ERSVLNNqlLEMKKRESEfrkdadEEKASLQKSIsltsALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLES--D 1243
Cdd:PRK02224 658 AEEYLEQ--VEEKLDELR------EERDDLQAEI----GAVENELEELEELRERREALENRVEALEALYDEAEELESmyG 725
|
650
....*....|..
gi 1907165148 1244 KVKLELKVKNLE 1255
Cdd:PRK02224 726 DLRAELRQRNVE 737
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
915-1260 |
5.29e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.86 E-value: 5.29e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 915 LRLKERSvEELQLKLTKANENASFLQKSIGEV-----TL-----KAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYN 984
Cdd:TIGR02168 168 SKYKERR-KETERKLERTRENLDRLEDILNELerqlkSLerqaeKAERYKELKAELRELELALLVLRLEELREELEELQE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 985 QCQDLKAKYEKASSETKTKHEEILQNLQKMLADtEDKLKAAQEANRDLMQDMEELKTQadKAKAAQTAEDAMQIMEQMTK 1064
Cdd:TIGR02168 247 ELKEAEEELEELTAELQELEEKLEELRLEVSEL-EEEIEELQKELYALANEISRLEQQ--KQILRERLANLERQLEELEA 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1065 EKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENV 1144
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1145 KLAEELGRTRDEVtshQKLEEERSVLNNQLLEMKKRESEFRKDA-DEEKASLQKSISLTSALLTEKDAELEKLRNEVTVL 1223
Cdd:TIGR02168 404 RLEARLERLEDRR---ERLQQEIEELLKKLEEAELKELQAELEElEEELEELQEELERLEEALEELREELEEAEQALDAA 480
|
330 340 350
....*....|....*....|....*....|....*..
gi 1907165148 1224 RGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKE 1260
Cdd:TIGR02168 481 ERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSG 517
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
60-121 |
6.05e-12 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 70.48 E-value: 6.05e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907165148 60 VGERVWVNGNKpGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRP 121
Cdd:COG5244 6 VNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRP 66
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
690-1052 |
6.62e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.48 E-value: 6.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 690 VEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEvignftsQLSAVKEKLLDLDALRKanSEGKLELETLRQQLEGAEKQIK 769
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLE-------RLRREREKAERYQALLK--EKREYEGYELLKEKEALERQKE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 770 NLETERNAESSKANSITKELQEKELVLTGLQDSLNQVN-QVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQK 848
Cdd:TIGR02169 241 AIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNkKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 849 EEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEndiaeimkmsgdnssqltkmnDELRLKERSVEELQLK 928
Cdd:TIGR02169 321 EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELK---------------------EELEDLRAELEEVDKE 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 929 LTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELekkmetsyNQCQDLKAKYEKASSETKTKHEEI- 1007
Cdd:TIGR02169 380 FAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLN--------AAIAGIEAKINELEEEKEDKALEIk 451
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1008 -----LQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTA 1052
Cdd:TIGR02169 452 kqewkLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARA 501
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
786-1316 |
8.33e-12 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 70.20 E-value: 8.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 786 TKELQEK-ELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLH-------QKEEQFNVLSS 857
Cdd:pfam01576 17 VKERQQKaESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHelesrleEEEERSQQLQN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 858 ELEKLRENLTDMEAKFKEKDDREDQL----VKAKEKLENDIAEIMKMSGDNSsqltKMNDELRLKERSVEELQLKLTKAN 933
Cdd:pfam01576 97 EKKKMQQHIQDLEEQLDEEEAARQKLqlekVTTEAKIKKLEEDILLLEDQNS----KLSKERKLLEERISEFTSNLAEEE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 934 ENASFLQK---------SIGEVTLKAEQSQQQAARKHEEEKKELEEKLLElekkmetsynQCQDLKAKYEKASSETKTKH 1004
Cdd:pfam01576 173 EKAKSLSKlknkheamiSDLEERLKKEEKGRQELEKAKRKLEGESTDLQE----------QIAELQAQIAELRAQLAKKE 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1005 EEiLQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQ--IMEQMTKEKTEtlasLEDTKQTNAr 1082
Cdd:pfam01576 243 EE-LQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRrdLGEELEALKTE----LEDTLDTTA- 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1083 LQNELDTLKENNL----KTVEELNKS-----KELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELgrt 1153
Cdd:pfam01576 317 AQQELRSKREQEVtelkKALEEETRSheaqlQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAEL--- 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1154 RDEVTSHQKLEEERSVLNNQLLEMKKRESE---FRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATA 1230
Cdd:pfam01576 394 RTLQQAKQDSEHKRKKLEGQLQELQARLSEserQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDT 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1231 KSLhsvVQTLESDKVKLELKVKNLELQLKENKRQLSsssgntdaqaEEDERAQESQQMIDFLNSVIVDLQRKNQDLKMKV 1310
Cdd:pfam01576 474 QEL---LQEETRQKLNLSTRLRQLEDERNSLQEQLE----------EEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTL 540
|
....*.
gi 1907165148 1311 EMMSEA 1316
Cdd:pfam01576 541 EALEEG 546
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
657-1215 |
8.76e-12 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 70.05 E-value: 8.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 657 ETMQAKLMKIIKEKEDSLEAVKARLDSAEDqhlvEMEDTLNKLQEAEIKVKELEVLQAKYTEQ----SEVIGNFTSQLSA 732
Cdd:TIGR04523 123 EVELNKLEKQKKENKKNIDKFLTEIKKKEK----ELEKLNNKYNDLKKQKEELENELNLLEKEklniQKNIDKIKNKLLK 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 733 VKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKEL----QEKELVLTGLQDSLNQVNQ 808
Cdd:TIGR04523 199 LELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLnqlkDEQNKIKKQLSEKQKELEQ 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 809 VKE---TLEKELQTLKEKFASTSEEAV------------SAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKF 873
Cdd:TIGR04523 279 NNKkikELEKQLNQLKSEISDLNNQKEqdwnkelkselkNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESEN 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 874 KEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEvtLKAEQS 953
Cdd:TIGR04523 359 SEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIER--LKETII 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 954 QQQAARKheeekkeleeKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEI---LQNLQKMLADTEDKLKAAQEANR 1030
Cdd:TIGR04523 437 KNNSEIK----------DLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIkqnLEQKQKELKSKEKELKKLNEEKK 506
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1031 DLMQDMEELKTQADKAKAAQTA-EDAMQIMEQMTKEKTETLASLEDTKQTNA------RLQNELDTLKENNLKTVEELNK 1103
Cdd:TIGR04523 507 ELEEKVKDLTKKISSLKEKIEKlESEKKEKESKISDLEDELNKDDFELKKENlekeidEKNKEIEELKQTQKSLKKKQEE 586
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1104 SKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELgrtRDEVTSHQKLEEERSVLNNQLLEMKKRESE 1183
Cdd:TIGR04523 587 KQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSII---KNIKSKKNKLKQEVKQIKETIKEIRNKWPE 663
|
570 580 590
....*....|....*....|....*....|..
gi 1907165148 1184 FRKDADEEKASLQKSISLTSALLTEKDAELEK 1215
Cdd:TIGR04523 664 IIKKIKESKTKIDDIIELMKDWLKELSLHYKK 695
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
350-897 |
2.66e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.42 E-value: 2.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 350 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARdghdQHVLELEAKMDQLRTMVEAADREKVELLNQ 429
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELE----EELEELEEELEELEEELEEAEEELEEAEAE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 430 LEEEKRKVEDLQFRVEEESITKGDLEQkspisedpENVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKppgdvdms 509
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEELAE--------ELLEALRAAAELAAQLEELEEAEEALLERLERLEEEL-------- 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 510 LSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWK- 588
Cdd:COG1196 424 EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADy 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 589 -SKLETAIASHQQA-MEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHE--------IESLQSKQ---------DSER 649
Cdd:COG1196 504 eGFLEGVKAALLLAgLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEddevaaaaIEYLKAAKagratflplDKIR 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 650 SAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQ 729
Cdd:COG1196 584 ARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLT 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 730 LSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSkansitKELQEKELVLTGLQDSLNQVNQV 809
Cdd:COG1196 664 GGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE------ERLEEELEEEALEEQLEAEREEL 737
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 810 KETLEKELQTLKEKFASTSEEAVSAQTrMQDTVNKLHQKEEQF---NVLS-SELEKLRENLTDMEAKfkekddREDqLVK 885
Cdd:COG1196 738 LEELLEEEELLEEEALEELPEPPDLEE-LERELERLEREIEALgpvNLLAiEEYEELEERYDFLSEQ------RED-LEE 809
|
570
....*....|..
gi 1907165148 886 AKEKLENDIAEI 897
Cdd:COG1196 810 ARETLEEAIEEI 821
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
859-1267 |
8.16e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.01 E-value: 8.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 859 LEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSV----------EELQLK 928
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELeklekevkelEELKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 929 LTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELE-KKMETSYNQCQDLKAKYEKASSE---TKTKH 1004
Cdd:PRK03918 240 IEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKElKEKAEEYIKLSEFYEEYLDELREiekRLSRL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1005 EEILQNLQKMLADTEDK---LKAAQEANRDLMQDMEELKtqadkaKAAQTAEDAMQIMEQMTKEKTETlasledTKQTNA 1081
Cdd:PRK03918 320 EEEINGIEERIKELEEKeerLEELKKKLKELEKRLEELE------ERHELYEEAKAKKEELERLKKRL------TGLTPE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1082 RLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEEN-----VKLAEELGRTRDE 1156
Cdd:PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHrkellEEYTAELKRIEKE 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1157 VtshQKLEEERSVLNNQLLEMKK---RESEF---RKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATA 1230
Cdd:PRK03918 468 L---KEIEEKERKLRKELRELEKvlkKESELiklKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSL 544
|
410 420 430
....*....|....*....|....*....|....*..
gi 1907165148 1231 KSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSS 1267
Cdd:PRK03918 545 KKELEKLEELKKKLAELEKKLDELEEELAELLKELEE 581
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
333-1191 |
1.11e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 66.70 E-value: 1.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 333 GLLTETSSRYARKISGTTALQEALK--EKQQHIEQLLAERDLERAEVAKAtshvGEIEQELALARDGHDQHVLELEAKMD 410
Cdd:PTZ00121 1098 GKAEEAKKTETGKAEEARKAEEAKKkaEDARKAEEARKAEDARKAEEARK----AEDAKRVEIARKAEDARKAEEARKAE 1173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 411 QLRTMVEAADREKVellnQLEEEKRKVEDLQfrvEEESITKGDLEQKSPISEDPENVATVSEKSRIMELEKDlALRAQEV 490
Cdd:PTZ00121 1174 DAKKAEAARKAEEV----RKAEELRKAEDAR---KAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKD-AEEAKKA 1245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 491 AELRRRLESSKPPGDVDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKAL---HTATEKLSKENE 567
Cdd:PTZ00121 1246 EEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKaeeAKKADEAKKKAE 1325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 568 SLRSKLDHANKENSDVialwKSKLETAIASHQQAMEELKVSFSKgigtdsAEFAELKTQIERLRLDYQHEiESLQSKQDS 647
Cdd:PTZ00121 1326 EAKKKADAAKKKAEEA----KKAAEAAKAEAEAAADEAEAAEEK------AEAAEKKKEEAKKKADAAKK-KAEEKKKAD 1394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 648 ERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKVKE---LEVLQAKYTEQSEvig 724
Cdd:PTZ00121 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEakkAEEAKKKAEEAKK--- 1471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 725 nfTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQlegAEKQIKNLETERNAESSKANSITKELQEKElvltglQDSLN 804
Cdd:PTZ00121 1472 --ADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKA---AEAKKKADEAKKAEEAKKADEAKKAEEAKK------ADEAK 1540
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 805 QVNQVK--ETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDdrEDQ 882
Cdd:PTZ00121 1541 KAEEKKkaDELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKA--EEA 1618
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 883 LVKAKEklendiaeimkmsgdnssqlTKMNDELRlkeRSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHE 962
Cdd:PTZ00121 1619 KIKAEE--------------------LKKAEEEK---KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK 1675
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 963 EEKKELEEKLLelekkmETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQD---MEEL 1039
Cdd:PTZ00121 1676 KAEEAKKAEED------EKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDkkkAEEA 1749
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1040 KT-QADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLK-ENNLKTVEELNKSKELlsVENQKMEE 1117
Cdd:PTZ00121 1750 KKdEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDiFDNFANIIEGGKEGNL--VINDSKEM 1827
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907165148 1118 FKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEE 1191
Cdd:PTZ00121 1828 EDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIERE 1901
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
618-1174 |
3.69e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.96 E-value: 3.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 618 AEFAELKTQIERLRLDYQhEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEdsleavkaRLDSAEDQHLVEMEDTLN 697
Cdd:COG1196 246 AELEELEAELEELEAELA-ELEAELEELRLELEELELELEEAQAEEYELLAELA--------RLEQDIARLEERRRELEE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 698 KLQEAEikvKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEgklELETLRQQLEGAEKQIKNLETERNA 777
Cdd:COG1196 317 RLEELE---EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE---ALLEAEAELAEAEEELEELAEELLE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 778 ESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSS 857
Cdd:COG1196 391 ALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 858 ELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSG-DNSSQLTKMNDELRLKERSVEELQLKLTKANENA 936
Cdd:COG1196 471 EAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLlAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQN 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 937 SFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILqnlqkmLA 1016
Cdd:COG1196 551 IVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTL------LG 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1017 DTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKEnnlk 1096
Cdd:COG1196 625 RTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALL---- 700
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165148 1097 tvEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQL 1174
Cdd:COG1196 701 --AEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
404-1347 |
4.14e-10 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 65.07 E-value: 4.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 404 ELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEeesitkgDLEQKSpISEDPENVATVSEKSRIMELEKDL 483
Cdd:TIGR01612 541 EIEAGLKESYELAKNWKKLIHEIKKELEEENEDSIHLEKEIK-------DLFDKY-LEIDDEIIYINKLKLELKEKIKNI 612
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 484 ALRAQEV---AELRRRLESSKPPGDVDMSLSLLQEISALQEKlEAIHTDHQGEMTSLkehfgareeaFQKEIKALHTATE 560
Cdd:TIGR01612 613 SDKNEYIkkaIDLKKIIENNNAYIDELAKISPYQVPEHLKNK-DKIYSTIKSELSKI----------YEDDIDALYNELS 681
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 561 KLSKENeslrsklDHANKENsdvialwKSKLEtaiashqqameelkvsfskgigtdsaefaELKTQIERlrldyqhEIES 640
Cdd:TIGR01612 682 SIVKEN-------AIDNTED-------KAKLD-----------------------------DLKSKIDK-------EYDK 711
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 641 LQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAvkarldsaedqhlvEMEDTLNK-LQEAEIKVKELEVLQAKYTEQ 719
Cdd:TIGR01612 712 IQNMETATVELHLSNIENKKNELLDIIVEIKKHIHG--------------EINKDLNKiLEDFKNKEKELSNKINDYAKE 777
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 720 SEVIGNFTSQLSAVKEKLLDLDALrkansegkleletlrqqlegaeKQIKNLETERNAESSKANSITKELQEKELVLTgl 799
Cdd:TIGR01612 778 KDELNKYKSKISEIKNHYNDQINI----------------------DNIKDEDAKQNYDKSKEYIKTISIKEDEIFKI-- 833
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 800 qdslnqVNQVKetlekelqTLKEKFASTSEEAVSAQTRMQDTVNKLHqkeEQFNVLSSEL--EKLRENLTDMEAKFKEkd 877
Cdd:TIGR01612 834 ------INEMK--------FMKDDFLNKVDKFINFENNCKEKIDSEH---EQFAELTNKIkaEISDDKLNDYEKKFND-- 894
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 878 dredqlvkaKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGevTLKAEQSqqqa 957
Cdd:TIGR01612 895 ---------SKSLINEINKSIEEEYQNINTLKKVDEYIKICENTKESIEKFHNKQNILKEILNKNID--TIKESNL---- 959
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 958 arkheeekkeleekllelekkMETSYnqcqdlKAKYEKASSETKTKHEEILQNLQkmLADTEDKlkaaqeaNRDLMQDME 1037
Cdd:TIGR01612 960 ---------------------IEKSY------KDKFDNTLIDKINELDKAFKDAS--LNDYEAK-------NNELIKYFN 1003
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1038 ELKTQADKAKAA------QTAEDAMQIMEQMTKEKTETLASLEDTKQTNarLQNELDTLKENNLKTVEELNksKELLSVE 1111
Cdd:TIGR01612 1004 DLKANLGKNKENmlyhqfDEKEKATNDIEQKIEDANKNIPNIEIAIHTS--IYNIIDEIEKEIGKNIELLN--KEILEEA 1079
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1112 NQKMEEFKKEIETLKQAAAQksqqlSALQEENVKLAEELGRTRDEV-TSHQKLEEERsvlnNQLLEMKKRESEFrkdADE 1190
Cdd:TIGR01612 1080 EINITNFNEIKEKLKHYNFD-----DFGKEENIKYADEINKIKDDIkNLDQKIDHHI----KALEEIKKKSENY---IDE 1147
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1191 EKASLQKSISLTSALLTEKDAE--LEKLRNEVTVLRGEN---ATAKSLHSVVQTLESDKVKLElKVKNLELQLKENKrql 1265
Cdd:TIGR01612 1148 IKAQINDLEDVADKAISNDDPEeiEKKIENIVTKIDKKKniyDEIKKLLNEIAEIEKDKTSLE-EVKGINLSYGKNL--- 1223
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1266 ssssgNTDAQAEEDERAQESQQMIDFLNSVIVDLQR-KNQDLKMKVEMMSEAALNGNGEDLNSYDSDDQEKQ--SKKKPR 1342
Cdd:TIGR01612 1224 -----GKLFLEKIDEEKKKSEHMIKAMEAYIEDLDEiKEKSPEIENEMGIEMDIKAEMETFNISHDDDKDHHiiSKKHDE 1298
|
....*
gi 1907165148 1343 LFCDI 1347
Cdd:TIGR01612 1299 NISDI 1303
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1015-1287 |
5.59e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 5.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1015 LADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENN 1094
Cdd:COG1196 218 LKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1095 LKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEEL-----------GRTRDEVTSHQKL 1163
Cdd:COG1196 298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELeeaeaelaeaeEALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1164 EEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESD 1243
Cdd:COG1196 378 EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1907165148 1244 KVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQQ 1287
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
700-1264 |
6.45e-10 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 64.00 E-value: 6.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 700 QEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAES 779
Cdd:pfam07111 63 QQAELISRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELDALAVAEKAGQAEAEGLRAALAGAEMVRKNLEEGSQREL 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 780 SKANSITKElqEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSEL 859
Cdd:pfam07111 143 EEIQRLHQE--QLSSLTQAHEEALSSLTSKAEGLEKSLNSLETKRAGEAKQLAEAQKEAELLRKQLSKTQEELEAQVTLV 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 860 EKLRENLTDM---EAKFKEKDDREDQLVKAKEKLENDIAEI---MKMSGDNSSQLTKM----NDELRLKERSVEELQLKL 929
Cdd:pfam07111 221 ESLRKYVGEQvppEVHSQTWELERQELLDTMQHLQEDRADLqatVELLQVRVQSLTHMlalqEEELTRKIQPSDSLEPEF 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 930 TKANEN--ASFLQKSIG-EVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQC-QDLKAKYEKASSETKT--- 1002
Cdd:pfam07111 301 PKKCRSllNRWREKVFAlMVQLKAQDLEHRDSVKQLRGQVAELQEQVTSQSQEQAILQRAlQDKAAEVEVERMSAKGlqm 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1003 ---KHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKA---------------AQTAEDAMQIMEQMTK 1064
Cdd:pfam07111 381 elsRAQEARRRQQQQTASAEEQLKFVVNAMSSTQIWLETTMTRVEQAVAripslsnrlsyavrkVHTIKGLMARKVALAQ 460
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1065 EKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVE---------------NQKMEEFKKEIETLKQAA 1129
Cdd:pfam07111 461 LRQESCPPPPPAPPVDADLSLELEQLREERNRLDAELQLSAHLIQQEvgrareqgeaerqqlSEVAQQLEQELQRAQESL 540
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1130 AQKSQQLSALQEENVKLAEELGRTRDEVTSHQ---------KLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKsIS 1200
Cdd:pfam07111 541 ASVGQQLEVARQGQQESTEEAASLRQELTQQQeiygqalqeKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQ-IQ 619
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907165148 1201 LTSALLTEKDAELEKLRNEVTVLRGENATAKslhsvVQTLESDKvKLELKVKNLELQLKENKRQ 1264
Cdd:pfam07111 620 HRATQEKERNQELRRLQDEARKEEGQRLARR-----VQELERDK-NLMLATLQQEGLLSRYKQQ 677
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
916-1243 |
8.83e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.42 E-value: 8.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 916 RLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQsqqqaarkheeekkeLEEKLlelekkmetsynqcqdlkAKYEK 995
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEE---------------LEAEL------------------AELEA 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 996 ASSETKTKHEEIlqnlqkmladtEDKLKAAQEANRDLMQDMEELktQADKAKAAQTAEDAMQIMEQMTKEKTETLASLED 1075
Cdd:COG1196 268 ELEELRLELEEL-----------ELELEEAQAEEYELLAELARL--EQDIARLEERRRELEERLEELEEELAELEEELEE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1076 TKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRD 1155
Cdd:COG1196 335 LEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1156 EVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHS 1235
Cdd:COG1196 415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
....*...
gi 1907165148 1236 VVQTLESD 1243
Cdd:COG1196 495 LLLEAEAD 502
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
427-1122 |
1.18e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 63.12 E-value: 1.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 427 LNQLEEEKRKVEDLQFRVEEEsitkgdleqkspisedpenvatvseksrIMELEKDLALRAQEVAELRRRLESSKppgdv 506
Cdd:TIGR04523 126 LNKLEKQKKENKKNIDKFLTE----------------------------IKKKEKELEKLNNKYNDLKKQKEELE----- 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 507 DMSLSLLQEISALQEKLEAIHTDHqgemtSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSD---V 583
Cdd:TIGR04523 173 NELNLLEKEKLNIQKNIDKIKNKL-----LKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEkttE 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 584 IALWKSKLETAIASHQQAMEELK------VSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEME 657
Cdd:TIGR04523 248 ISNTQTQLNQLKDEQNKIKKQLSekqkelEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQ 327
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 658 TMQAKLMKIIKEKEDSLEAVKARLDSAEDqhlvemeDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKL 737
Cdd:TIGR04523 328 NQISQNNKIISQLNEQISQLKKELTNSES-------ENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKI 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 738 LDLDalrKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKEL 817
Cdd:TIGR04523 401 QNQE---KLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSI 477
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 818 QTLKekfastseeavsaqtrmqdtvNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEI 897
Cdd:TIGR04523 478 NKIK---------------------QNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEK 536
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 898 MKMSGDNSSQLTKMNDELR--LKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQaarkheeeKKELEEKLLEL 975
Cdd:TIGR04523 537 ESKISDLEDELNKDDFELKkeNLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKE--------KKDLIKEIEEK 608
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 976 EKKMETSYNQCQDLKAKYEKASSEtKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADkakaaqtaeDA 1055
Cdd:TIGR04523 609 EKKISSLEKELEKAKKENEKLSSI-IKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKID---------DI 678
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907165148 1056 MQIMEQMTKEKTETlaslEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEI 1122
Cdd:TIGR04523 679 IELMKDWLKELSLH----YKKYITRMIRIKDLPKLEEKYKEIEKELKKLDEFSKELENIIKNFNKKF 741
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
613-1126 |
1.53e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.77 E-value: 1.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 613 IGTDSAEFAELKTQIErlrldyqhEIESLQSKQDSERSAHAKEMETMQ------AKLMKIIKEKEDSLEAVKARLDSAED 686
Cdd:PRK03918 195 IKEKEKELEEVLREIN--------EISSELPELREELEKLEKEVKELEelkeeiEELEKELESLEGSKRKLEEKIRELEE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 687 QhLVEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKA-------NSEGKLELETLRQ 759
Cdd:PRK03918 267 R-IEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGieerikeLEEKEERLEELKK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 760 QLEGAEKQIKNLEtERNAESSKANSITKELQEKELVLTG-----LQDSLNQVNQVKETLEKELQTLKEKFASTSEEAvsa 834
Cdd:PRK03918 346 KLKELEKRLEELE-ERHELYEEAKAKKEELERLKKRLTGltpekLEKELEELEKAKEEIEEEISKITARIGELKKEI--- 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 835 qTRMQDTVNKLHQKEEQFNVLSSEL---------EKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNS 905
Cdd:PRK03918 422 -KELKKAIEELKKAKGKCPVCGRELteehrkellEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKE 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 906 SQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEV-TLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYN 984
Cdd:PRK03918 501 LAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIkSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELE 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 985 Q------------CQDLKAKYEKASSETKTKHEeiLQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTA 1052
Cdd:PRK03918 581 ElgfesveeleerLKELEPFYNEYLELKDAEKE--LEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSE 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1053 EDAMQIMEQMTK------EKTETLASLEDTKQTNARLQNELdtlkENNLKTVEELNKSKELLSVENQKMEEFKKEIETLK 1126
Cdd:PRK03918 659 EEYEELREEYLElsrelaGLRAELEELEKRREEIKKTLEKL----KEELEEREKAKKELEKLEKALERVEELREKVKKYK 734
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
353-864 |
1.83e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 62.63 E-value: 1.83e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 353 QEALKEKQQhIEQLLAERDLeRAEVAKATSHVGEIEQELALARDGHDQHVLEL-EAKMDQLRTMVEAADREKVELLNQLE 431
Cdd:COG4913 242 EALEDAREQ-IELLEPIREL-AERYAAARERLAELEYLRAALRLWFAQRRLELlEAELEELRAELARLEAELERLEARLD 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 432 EEKRKVEDLqfrveEESITKGDLEQKSPIsedpenvatvseKSRIMELEKDLALRAQEVAELRRRLES--SKPPGDVDMS 509
Cdd:COG4913 320 ALREELDEL-----EAQIRGNGGDRLEQL------------EREIERLERELEERERRRARLEALLAAlgLPLPASAEEF 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 510 LSLLQEISALQEKLEAIHTDHQGEMTSLKehfgAREEAFQKEIKALhtateklSKENESLRSkldhaNKEN--SDVIALw 587
Cdd:COG4913 383 AALRAEAAALLEALEEELEALEEALAEAE----AALRDLRRELREL-------EAEIASLER-----RKSNipARLLAL- 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 588 KSKLETAIASHQQAM----EELKVSFSKGIGTDSAE----------------FAELKTQIERL----RLDYQH------- 636
Cdd:COG4913 446 RDALAEALGLDEAELpfvgELIEVRPEEERWRGAIErvlggfaltllvppehYAAALRWVNRLhlrgRLVYERvrtglpd 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 637 ------EIESLQSKQDSERSAHAKEMETMQAKLMKIIK-EKEDSLE----AV---------------------------- 677
Cdd:COG4913 526 perprlDPDSLAGKLDFKPHPFRAWLEAELGRRFDYVCvDSPEELRrhprAItragqvkgngtrhekddrrrirsryvlg 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 678 ---KARLDSAEDQhLVEMEDTLNKLQEAeikVKELEVLQAKYTEQSEVIGNFTSQ------LSAVKEKLLDLDALRKANS 748
Cdd:COG4913 606 fdnRAKLAALEAE-LAELEEELAEAEER---LEALEAELDALQERREALQRLAEYswdeidVASAEREIAELEAELERLD 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 749 EGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELqtLKEKFASTS 828
Cdd:COG4913 682 ASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL--LEERFAAAL 759
|
570 580 590
....*....|....*....|....*....|....*.
gi 1907165148 829 EEAVSAQTRmQDTVNKLHQKEEQFNVLSSELEKLRE 864
Cdd:COG4913 760 GDAVERELR-ENLEERIDALRARLNRAEEELERAMR 794
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
473-1125 |
1.89e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 62.35 E-value: 1.89e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 473 KSRIMELEKDLALRAQEVAELRRRLESSKppgdvDMSLSLLQEISALQEKLEAIHTDHqgemtSLKEHFGAREEAFQKEI 552
Cdd:TIGR04523 144 LTEIKKKEKELEKLNNKYNDLKKQKEELE-----NELNLLEKEKLNIQKNIDKIKNKL-----LKLELLLSNLKKKIQKN 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 553 KALHTATEKLSKENESLRSKLDHANKENSD---VIALWKSKLETAIASHQQAMEELK------VSFSKGIGTDSAEFAEL 623
Cdd:TIGR04523 214 KSLESQISELKKQNNQLKDNIEKKQQEINEkttEISNTQTQLNQLKDEQNKIKKQLSekqkelEQNNKKIKELEKQLNQL 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 624 KTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDqhlvemeDTLNKLQEAE 703
Cdd:TIGR04523 294 KSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSES-------ENSEKQRELE 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 704 IKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDalrKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKAN 783
Cdd:TIGR04523 367 EKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQE---KLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIK 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 784 SITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKekfastseeavsaqtrmqdtvNKLHQKEEQFNVLSSELEKLR 863
Cdd:TIGR04523 444 DLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIK---------------------QNLEQKQKELKSKEKELKKLN 502
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 864 ENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELR--LKERSVEELQLKLTKANENASFLQK 941
Cdd:TIGR04523 503 EEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKkeNLEKEIDEKNKEIEELKQTQKSLKK 582
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 942 SIGEVTLKAEQSQQQaarkheeeKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSEtKTKHEEILQNLQKMLADTEDK 1021
Cdd:TIGR04523 583 KQEEKQELIDQKEKE--------KKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSI-IKNIKSKKNKLKQEVKQIKET 653
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1022 LKAAQEANRDLMQDMEELKTQADkakaaqtaeDAMQIMEQMTKEKTETlaslEDTKQTNARLQNELDTLKENNLKTVEEL 1101
Cdd:TIGR04523 654 IKEIRNKWPEIIKKIKESKTKID---------DIIELMKDWLKELSLH----YKKYITRMIRIKDLPKLEEKYKEIEKEL 720
|
650 660
....*....|....*....|....
gi 1907165148 1102 nkskellsvenQKMEEFKKEIETL 1125
Cdd:TIGR04523 721 -----------KKLDEFSKELENI 733
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
529-1340 |
5.20e-09 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 61.22 E-value: 5.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 529 DHQGEMTSLKEHFGAREEAFQKEIKALHT-ATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAM----- 602
Cdd:TIGR00606 87 DVNGEECAVVRSMVCTQKTKKTEFKTLEGvITRYKHGEKVSLSSKCAEIDREMISHLGVSKAVLNNVIFCHQEDSnwpls 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 603 --EELKVSFSKGIgtDSAEFAELKTQIERLRLDYQHEIESLQS-----KQDSERSAHAKEM----ETMQAKLMKIIKEKE 671
Cdd:TIGR00606 167 egKALKQKFDEIF--SATRYIKALETLRQVRQTQGQKVQEHQMelkylKQYKEKACEIRDQitskEAQLESSREIVKSYE 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 672 DSLEAVKARLDSAEDQ--HLVEMEDTLNKLQE---------AEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDL 740
Cdd:TIGR00606 245 NELDPLKNRLKEIEHNlsKIMKLDNEIKALKSrkkqmekdnSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDC 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 741 DALRKANSEGKLELETLRQQLEgAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSL-------NQVNQVKETL 813
Cdd:TIGR00606 325 QRELEKLNKERRLLNQEKTELL-VEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPfserqikNFHTLVIERQ 403
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 814 EKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEND 893
Cdd:TIGR00606 404 EDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKA 483
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 894 IAEIMKMSgDNSSQLTKMNDELRLKERSVEELQLKLTKANENAsflQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLL 973
Cdd:TIGR00606 484 ERELSKAE-KNSLTETLKKEVKSLQNEKADLDRKLRKLDQEME---QLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHS 559
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 974 ELEKKMETSYNQCQDLKAKYEKASSEtKTKHEEILQNLQKMLADTE---------DKLKAAQEAN-----------RDLM 1033
Cdd:TIGR00606 560 DELTSLLGYFPNKKQLEDWLHSKSKE-INQTRDRLAKLNKELASLEqnknhinneLESKEEQLSSyedklfdvcgsQDEE 638
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1034 QDMEELKTQADKAK---AAQTAEDAM--QIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELL 1108
Cdd:TIGR00606 639 SDLERLKEEIEKSSkqrAMLAGATAVysQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESEL 718
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1109 SVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEE--------------ERSVLNNQL 1174
Cdd:TIGR00606 719 KKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGtimpeeesakvcltDVTIMERFQ 798
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1175 LEMKKRESEFRKDADEEKAS-LQKSISLTSALLTEKDAELEKLRNEVTVLRG----ENATAKSLHSVVQTLESDKVKLEL 1249
Cdd:TIGR00606 799 MELKDVERKIAQQAAKLQGSdLDRTVQQVNQEKQEKQHELDTVVSKIELNRKliqdQQEQIQHLKSKTNELKSEKLQIGT 878
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1250 KVKNLElQLKENKRQLSS--SSGNTDAQAEEDERAQESQQMIDFLNSVIVDLQRKNQDLK---MKVEMMSEAALNGNG-- 1322
Cdd:TIGR00606 879 NLQRRQ-QFEEQLVELSTevQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKkaqDKVNDIKEKVKNIHGym 957
|
890
....*....|....*...
gi 1907165148 1323 EDLNSYDSDDQEKQSKKK 1340
Cdd:TIGR00606 958 KDIENKIQDGKDDYLKQK 975
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
549-1265 |
8.59e-09 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 60.12 E-value: 8.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 549 QKEIKALHTATEKLSKENESLRSKLDHANKENSDVIA------LWKSKLETAIAS----------HQQAMEELKVSFSKG 612
Cdd:pfam05483 112 RKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKennatrHLCNLLKETCARsaektkkyeyEREETRQVYMDLNNN 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 613 IGTDSAEFAELKTQIERLRLDYQHEIeslqsKQDSERSAHAKEmetmqaKLMKIIKEKEDSLEAVKARLDSAEDQhlveM 692
Cdd:pfam05483 192 IEKMILAFEELRVQAENARLEMHFKL-----KEDHEKIQHLEE------EYKKEINDKEKQVSLLLIQITEKENK----M 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 693 EDTLNKLQEAEIKVKELEvlqAKYTEQSEVIGNFTSQLSAVKEKLLDLD-ALRKANSEGKleleTLRQQLEGAEKQIKNL 771
Cdd:pfam05483 257 KDLTFLLEESRDKANQLE---EKTKLQDENLKELIEKKDHLTKELEDIKmSLQRSMSTQK----ALEEDLQIATKTICQL 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 772 ETERNAESSKANsitKELQEKELVLTGLQDSLNqvnqvkeTLEKELQTLKEKfastseeavsaqtrmqdtvnkLHQKEEQ 851
Cdd:pfam05483 330 TEEKEAQMEELN---KAKAAHSFVVTEFEATTC-------SLEELLRTEQQR---------------------LEKNEDQ 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 852 FNVLSSELEKLRENLTDMeAKFKEKDDREDQLVKA----KEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQL 927
Cdd:pfam05483 379 LKIITMELQKKSSELEEM-TKFKNNKEVELEELKKilaeDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEI 457
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 928 KLTKANENASFLQKSIGEVTLKAEQSQQqaarKHEEEKKELEEKLLELEKKMETSYNQCQDLKaKYEKASSETKTKHEEI 1007
Cdd:pfam05483 458 QLTAIKTSEEHYLKEVEDLKTELEKEKL----KNIELTAHCDKLLLENKELTQEASDMTLELK-KHQEDIINCKKQEERM 532
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1008 LQNLQKmLADTEDKLKAAQEANRdlmqdmEELKTQADKAKAAQtaedamqimeqmtkektetlasleDTKQTNARLQNEL 1087
Cdd:pfam05483 533 LKQIEN-LEEKEMNLRDELESVR------EEFIQKGDEVKCKL------------------------DKSEENARSIEYE 581
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1088 DTLKENNLKTVE-ELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDE----VTSHQK 1162
Cdd:pfam05483 582 VLKKEKQMKILEnKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKfeeiIDNYQK 661
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1163 LEEERSVLNNQLLEmkkrESEFRKDADEEKASLQKSISL-TSALLTEKDAELEKLRNEVTVLRGENATAKSLH-SVVQTL 1240
Cdd:pfam05483 662 EIEDKKISEEKLLE----EVEKAKAIADEAVKLQKEIDKrCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYkNKEQEQ 737
|
730 740
....*....|....*....|....*
gi 1907165148 1241 ESDKVKLELKVKNLELQLKENKRQL 1265
Cdd:pfam05483 738 SSAKAALEIELSNIKAELLSLKKQL 762
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
719-937 |
2.37e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.85 E-value: 2.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 719 QSEVIGNFTSQLSAVKEKLL----DLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKEL 794
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAelekELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 795 VLTGLQDSLNQVNQvkeTLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFK 874
Cdd:COG4942 98 ELEAQKEELAELLR---ALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907165148 875 EKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENAS 937
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
340-1066 |
5.53e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.77 E-value: 5.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 340 SRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELaLARDGHDQHVLELEAKMDQLRTMVEAA 419
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV-KELEELKEEIEELEKELESLEGSKRKL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 420 DREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKSPISEDPENVatvseKSRIMELEKDLALRAQEVAELRRRLEs 499
Cdd:PRK03918 258 EEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEY-----LDELREIEKRLSRLEEEINGIEERIK- 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 500 sKPPGDVDMSLSLLQEISALQEKLEAIHTDHQ---------GEMTSLKEHFGARE-EAFQKEIKALHTATEKLSKENESL 569
Cdd:PRK03918 332 -ELEEKEERLEELKKKLKELEKRLEELEERHElyeeakakkEELERLKKRLTGLTpEKLEKELEELEKAKEEIEEEISKI 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 570 RSKldhankensdvialwKSKLETAIASHQQAMEELKVsfskgigtdsaefAELKTQIERLRLDYQHEIESLqskqdSER 649
Cdd:PRK03918 411 TAR---------------IGELKKEIKELKKAIEELKK-------------AKGKCPVCGRELTEEHRKELL-----EEY 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 650 SAHAKEMEtmqaKLMKIIKEKEDSLEAVKARLDS--AEDQHLVEMEDTLNKLQEAEIKVKE--LEVLQAKYTEQSEV--- 722
Cdd:PRK03918 458 TAELKRIE----KELKEIEEKERKLRKELRELEKvlKKESELIKLKELAEQLKELEEKLKKynLEELEKKAEEYEKLkek 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 723 IGNFTSQLSAVKEKLLDLDALRKansegklELETLRQQLEGAEKQIKNLETERnaeSSKANSITKELQEKelvLTGLQDS 802
Cdd:PRK03918 534 LIKLKGEIKSLKKELEKLEELKK-------KLAELEKKLDELEEELAELLKEL---EELGFESVEELEER---LKELEPF 600
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 803 LNQVNQVKETlEKELQTLKEKFASTSEEavsaqtrmqdtvnkLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREdq 882
Cdd:PRK03918 601 YNEYLELKDA-EKELEREEKELKKLEEE--------------LDKAFEELAETEKRLEELRKELEELEKKYSEEEYEE-- 663
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 883 lvkakeklendiaeimkmsgdNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLqksigevtlkaeqsqqqaarkhe 962
Cdd:PRK03918 664 ---------------------LREEYLELSRELAGLRAELEELEKRREEIKKTLEKL----------------------- 699
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 963 eekkeleekllelekkmetsynqcqdlkakyeKASSETKTKHEEILQNLQKMLADTEDklkaaqeanrdLMQDMEELKTQ 1042
Cdd:PRK03918 700 --------------------------------KEELEEREKAKKELEKLEKALERVEE-----------LREKVKKYKAL 736
|
730 740
....*....|....*....|....
gi 1907165148 1043 ADKAKAAQTAEDAMQIMEQMTKEK 1066
Cdd:PRK03918 737 LKERALSKVGEIASEIFEELTEGK 760
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
351-965 |
9.34e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 9.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 351 ALQEALKEKQqhIEQLLAERDLERAEVAKATSHVGEIEQELALARdghdQHVLELEAKMDQLRTMVEAADREKVELLNQL 430
Cdd:COG1196 217 ELKEELKELE--AELLLLKLRELEAELEELEAELEELEAELEELE----AELAELEAELEELRLELEELELELEEAQAEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 431 EEEKRKVEDLQFRVEeesitkgdleqkspisedpenvatvSEKSRIMELEKDLALRAQEVAELRRRLESskppgdvdmsl 510
Cdd:COG1196 291 YELLAELARLEQDIA-------------------------RLEERRRELEERLEELEEELAELEEELEE----------- 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 511 sLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALwkSK 590
Cdd:COG1196 335 -LEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAE--EA 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 591 LETAIASHQQAMEELKvsfskgigTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQ--AKLMKIIK 668
Cdd:COG1196 412 LLERLERLEEELEELE--------EALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAllEAALAELL 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 669 EKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIK--VKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALR-- 744
Cdd:COG1196 484 EELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRglAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAai 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 745 ---KANSEGKLELETLRQQlegAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLK 821
Cdd:COG1196 564 eylKAAKAGRATFLPLDKI---RARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAV 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 822 EKFASTSEEAVSAQTRMQDTVNKLHQKEEQfnvLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEndiaeimkms 901
Cdd:COG1196 641 TLAGRLREVTLEGEGGSAGGSLTGGSRREL---LAALLEAEAELEELAERLAEEELELEEALLAEEEEER---------- 707
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907165148 902 gdnssQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEK 965
Cdd:COG1196 708 -----ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELE 766
|
|
| CLIP1_ZNF |
pfam16641 |
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of ... |
1382-1398 |
1.02e-07 |
|
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of the cytoplasmic linker protein CLIP1 (CLIP170). It forms a complex with the CAP-Gly domain of Dynactin.
Pssm-ID: 465212 Cd Length: 17 Bit Score: 49.00 E-value: 1.02e-07
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
413-921 |
1.30e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.20 E-value: 1.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 413 RTMVEAADREKVELLNQLEEEKRKVE--DLQFRVEEesitkgdLEQK-SPISEDPENVATVSEKSRimELEKDLALRAQE 489
Cdd:PRK02224 175 RLGVERVLSDQRGSLDQLKAQIEEKEekDLHERLNG-------LESElAELDEEIERYEEQREQAR--ETRDEADEVLEE 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 490 VAELRRRLESskppgdvdmslsLLQEISALQEKLEAIHTDhqgemtslkehfgarEEAFQKEIKALHTATEKLSKENESL 569
Cdd:PRK02224 246 HEERREELET------------LEAEIEDLRETIAETERE---------------REELAEEVRDLRERLEELEEERDDL 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 570 RSKLDHANKEnSDVIALWKSKLETAIASHQQAMEELKVSFSkgigtdsaefaELKTQIERLRldyqHEIESLQSKQDSER 649
Cdd:PRK02224 299 LAEAGLDDAD-AEAVEARREELEDRDEELRDRLEECRVAAQ-----------AHNEEAESLR----EDADDLEERAEELR 362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 650 SAhAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQhlveMEDTLNKLQEAEikvKELEVLQAKYTEQSEVIGNFTSQ 729
Cdd:PRK02224 363 EE-AAELESELEEAREAVEDRREEIEELEEEIEELRER----FGDAPVDLGNAE---DFLEELREERDELREREAELEAT 434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 730 LSAVKEKLLDLDALRKA-----------NSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSItKELQEKElvltg 798
Cdd:PRK02224 435 LRTARERVEEAEALLEAgkcpecgqpveGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERA-EDLVEAE----- 508
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 799 lqDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDD 878
Cdd:PRK02224 509 --DRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKE 586
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 1907165148 879 REDQLVKAKEKLEnDIAEIMKMSG---DNSSQLTKMNDELR--LKERS 921
Cdd:PRK02224 587 RIESLERIRTLLA-AIADAEDEIErlrEKREALAELNDERRerLAEKR 633
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
543-1145 |
1.90e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 55.75 E-value: 1.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 543 AREEAFQKEIKALHTATEKLSKENESLR-----SKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDS 617
Cdd:TIGR00618 267 ARIEELRAQEAVLEETQERINRARKAAPlaahiKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRL 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 618 AEFAELKTQIERLRLDYQHEIESLQSKQDSERS-----AHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAED---QHL 689
Cdd:TIGR00618 347 LQTLHSQEIHIRDAHEVATSIREISCQQHTLTQhihtlQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRdlqGQL 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 690 VEMEDTlnklQEAEIKVKELEVLQAKYTEQSEVIGNFTSQ-----LSAVKEKLLDLDALRKANSEGKLELETLRQQLEGA 764
Cdd:TIGR00618 427 AHAKKQ----QELQQRYAELCAAAITCTAQCEKLEKIHLQesaqsLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEE 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 765 EKQIKNLETERNAESSKANsitkELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNK 844
Cdd:TIGR00618 503 PCPLCGSCIHPNPARQDID----NPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQC 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 845 LHQKEEQFNVLSSELEKLREnLTDMEAKFKEKDDREDQLVKAKEKLENDIAEImkmsgdnSSQLTKMNDELRLKERSVEE 924
Cdd:TIGR00618 579 DNRSKEDIPNLQNITVRLQD-LTEKLSEAEDMLACEQHALLRKLQPEQDLQDV-------RLHLQQCSQELALKLTALHA 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 925 LQLKLTKANENASFLQ--------KSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKA 996
Cdd:TIGR00618 651 LQLTLTQERVREHALSirvlpkelLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSL 730
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 997 SSETKTKHEEILQNLQKMLADTEDKLKAAQEAN-RDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLE- 1074
Cdd:TIGR00618 731 GSDLAAREDALNQSLKELMHQARTVLKARTEAHfNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGq 810
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907165148 1075 --DTKQTNARLQNELDTLKENNLKT-VEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVK 1145
Cdd:TIGR00618 811 eiPSDEDILNLQCETLVQEEEQFLSrLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQI 884
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
335-955 |
1.94e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.82 E-value: 1.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 335 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDqhvleleakmdqlrt 414
Cdd:PRK02224 239 ADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAG--------------- 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 415 mVEAADREKVELlnQLEEEKRKVEDLQFRVEEESITKGDLEqkspisedpenvatvSEKSRIMELEKDLALRAQEVAELR 494
Cdd:PRK02224 304 -LDDADAEAVEA--RREELEDRDEELRDRLEECRVAAQAHN---------------EEAESLREDADDLEERAEELREEA 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 495 RRLESskppgDVDMSLSLLQEISALQEKLEAihtdhqgEMTSLKEHFGAREEAFqkeikalhtatEKLSKENESLRSKLD 574
Cdd:PRK02224 366 AELES-----ELEEAREAVEDRREEIEELEE-------EIEELRERFGDAPVDL-----------GNAEDFLEELREERD 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 575 HANKENSDVIALWKSkLETAIASHQQAMEELKVSfskgigtdsaefaelktqierlrldyqheiESLQSKQDSERSAHAK 654
Cdd:PRK02224 423 ELREREAELEATLRT-ARERVEEAEALLEAGKCP------------------------------ECGQPVEGSPHVETIE 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 655 EMETMQAKLMKIIKEKEDSLEAVKARLDSAEDqhLVEMEDTLNKLQEaeiKVKELEVLQAKYTEQSEvignftsqlsavk 734
Cdd:PRK02224 472 EDRERVEELEAELEDLEEEVEEVEERLERAED--LVEAEDRIERLEE---RREDLEELIAERRETIE------------- 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 735 EKLLDLDALRKAnsegKLELETlrqqlEGAEKQIKNLETERNAEssKANSITKELQEKELVLTGLQDSLNQVNQV---KE 811
Cdd:PRK02224 534 EKRERAEELRER----AAELEA-----EAEEKREAAAEAEEEAE--EAREEVAELNSKLAELKERIESLERIRTLlaaIA 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 812 TLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFN-----VLSSELEKLRENLTDMEAKFKEKDDREDQLVKA 886
Cdd:PRK02224 603 DAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDearieEAREDKERAEEYLEQVEEKLDELREERDDLQAE 682
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907165148 887 KEKLENDIAEImkmsgdnssqltkmnDELRLKERSVEELQLKLTKANENASFLQKSIGEvtLKAEQSQQ 955
Cdd:PRK02224 683 IGAVENELEEL---------------EELRERREALENRVEALEALYDEAEELESMYGD--LRAELRQR 734
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
740-896 |
2.46e-07 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 53.39 E-value: 2.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 740 LDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKE--TLEKEL 817
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEyeALQKEI 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907165148 818 QTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLtdmEAKFKEKDDREDQLVKAKEKLENDIAE 896
Cdd:COG1579 99 ESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAEL---DEELAELEAELEELEAEREELAAKIPP 174
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
754-1180 |
2.63e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 55.16 E-value: 2.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 754 LETLRQQLEGA-EKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEE-- 830
Cdd:COG4717 40 LAFIRAMLLERlEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREEle 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 831 AVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEndiAEIMKMSGDNSSQLTK 910
Cdd:COG4717 120 KLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELE---ELLEQLSLATEEELQD 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 911 MNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDL- 989
Cdd:COG4717 197 LAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIa 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 990 ------------------KAKYEKASSETKTKHEEILQNLQKM-----LADTEDKLKAAQEANRDLMQDMEELKTQADKA 1046
Cdd:COG4717 277 gvlflvlgllallflllaREKASLGKEAEELQALPALEELEEEeleelLAALGLPPDLSPEELLELLDRIEELQELLREA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1047 KAAQTAEDAMQIMEQMTK-------EKTETLASLEDTKQTNARLQNELDTLKENnlktVEELNKSKELLSVENQKmEEFK 1119
Cdd:COG4717 357 EELEEELQLEELEQEIAAllaeagvEDEEELRAALEQAEEYQELKEELEELEEQ----LEELLGELEELLEALDE-EELE 431
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907165148 1120 KEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEvTSHQKLEEERSVLNNQLLEMKKR 1180
Cdd:COG4717 432 EELEELEEELEELEEELEELREELAELEAELEQLEED-GELAELLQELEELKAELRELAEE 491
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
753-959 |
3.12e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.38 E-value: 3.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 753 ELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAV 832
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 833 SAQTRMQDTVNKLHQKEEQ----FNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQL 908
Cdd:COG4942 101 AQKEELAELLRALYRLGRQpplaLLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALL 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1907165148 909 TKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAAR 959
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
560-1317 |
3.12e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 55.18 E-value: 3.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 560 EKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKgigtdSAEFAELKTQIERLRLDYQHEIE 639
Cdd:pfam01576 200 EKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALAR-----LEEETAQKNNALKKIRELEAQIS 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 640 SLQSKQDSERSAHAKEMET---MQAKLMKIIKEKEDSLE--AVKARLDSAEDQHLVEMEDTLnklqEAEIKVKELEVLQA 714
Cdd:pfam01576 275 ELQEDLESERAARNKAEKQrrdLGEELEALKTELEDTLDttAAQQELRSKREQEVTELKKAL----EEETRSHEAQLQEM 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 715 KyTEQSEVIGNFTSQLSAVKEKLLDLD----ALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQ 790
Cdd:pfam01576 351 R-QKHTQALEELTEQLEQAKRNKANLEkakqALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 791 EKELVLTGLQDSLNQVNQVKETLEKELQTLkekfastSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDME 870
Cdd:pfam01576 430 ELAEKLSKLQSELESVSSLLNEAEGKNIKL-------SKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQ 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 871 AKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKA 950
Cdd:pfam01576 503 EQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQEL 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 951 EQS--QQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLadteDKLKAAQEA 1028
Cdd:pfam01576 583 DDLlvDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEAL----EAKEELERT 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1029 NRDLMQDMEEL-KTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLED----TKQTNARLQNELDTLK---ENNLKTVEE 1100
Cdd:pfam01576 659 NKQLRAEMEDLvSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDelqaTEDAKLRLEVNMQALKaqfERDLQARDE 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1101 LNKSKELLSVenQKMEEFKKEIETLKQaaaQKSQQLSALQeenvKLAEELGRTRDEVTSHQKLEEERSvlnNQLLEMKKR 1180
Cdd:pfam01576 739 QGEEKRRQLV--KQVRELEAELEDERK---QRAQAVAAKK----KLELDLKELEAQIDAANKGREEAV---KQLKKLQAQ 806
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1181 ESEFRKDADEEKASLQKSISLTSalltEKDAELEKLRNEVTVLRGENATAKSLHSVVQTlESDKVKLELKVKNL-ELQLK 1259
Cdd:pfam01576 807 MKDLQRELEEARASRDEILAQSK----ESEKKLKNLEAELLQLQEDLAASERARRQAQQ-ERDELADEIASGASgKSALQ 881
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1260 ENKRQLSSSSGNTDAQAEE--------DERAQESQQMIDFLNSVIV--------------DLQRKNQDLKMKVEMMSEAA 1317
Cdd:pfam01576 882 DEKRRLEARIAQLEEELEEeqsntellNDRLRKSTLQVEQLTTELAaerstsqksesarqQLERQNKELKAKLQEMEGTV 961
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
676-1219 |
4.71e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.54 E-value: 4.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 676 AVKARLDSAEDQ--HLVEMEDTLNKLQEaeiKVKELEVLQAKYTEqsevignftsqLSAVKEKLLDLDALRKAnsegkLE 753
Cdd:COG4913 222 DTFEAADALVEHfdDLERAHEALEDARE---QIELLEPIRELAER-----------YAAARERLAELEYLRAA-----LR 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 754 LETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQV-NQVKETLEKELQTLKEKFastsEEAV 832
Cdd:COG4913 283 LWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLEREL----EERE 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 833 SAQTRMQDTVNKLHQK----EEQFNVLSSELEKLRENLTDMEAKFKEK----DDREDQLVKAKEKLENDIAEIMKMSGDN 904
Cdd:COG4913 359 RRRARLEALLAALGLPlpasAEEFAALRAEAAALLEALEEELEALEEAlaeaEAALRDLRRELRELEAEIASLERRKSNI 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 905 SSQLTKM----NDELRLKERSV----EELQLKLTKAN-ENA----------SFL--QKSIGEVTLKAEQSQQ------QA 957
Cdd:COG4913 439 PARLLALrdalAEALGLDEAELpfvgELIEVRPEEERwRGAiervlggfalTLLvpPEHYAAALRWVNRLHLrgrlvyER 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 958 ARKHEEEKKELEEKLLELEKKMETSYNQCQD-LKAKYEKASSETKTKHEEILQNLQKML--------------------- 1015
Cdd:COG4913 519 VRTGLPDPERPRLDPDSLAGKLDFKPHPFRAwLEAELGRRFDYVCVDSPEELRRHPRAItragqvkgngtrhekddrrri 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1016 -------ADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELD 1088
Cdd:COG4913 599 rsryvlgFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1089 TLKENNlKTVEELnkskellsveNQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVtshQKLEEERS 1168
Cdd:COG4913 679 RLDASS-DDLAAL----------EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL---EAAEDLAR 744
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 1907165148 1169 VLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNE 1219
Cdd:COG4913 745 LELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
622-1265 |
5.60e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 54.28 E-value: 5.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 622 ELKTQIERLRLDYQHEIESLQSKQdSERSAHAKEMETMQAKlMKIIKEKEDSLEAVKARLDSAEDQHLVE---MEDTLNK 698
Cdd:TIGR00606 430 EIRDEKKGLGRTIELKKEILEKKQ-EELKFVIKELQQLEGS-SDRILELDQELRKAERELSKAEKNSLTEtlkKEVKSLQ 507
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 699 LQEAEIkVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELETLrqqlEGAEKQIKNLETERNAE 778
Cdd:TIGR00606 508 NEKADL-DRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSL----LGYFPNKKQLEDWLHSK 582
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 779 SSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKF--ASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLS 856
Cdd:TIGR00606 583 SKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLfdVCGSQDEESDLERLKEEIEKSSKQRAMLAGAT 662
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 857 SELEKLRENLTDMEAKFKEKDDREdqlVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENA 936
Cdd:TIGR00606 663 AVYSQFITQLTDENQSCCPVCQRV---FQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSII 739
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 937 SFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKkmETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMla 1016
Cdd:TIGR00606 740 DLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPE--EESAKVCLTDVTIMERFQMELKDVERKIAQQAAKL-- 815
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1017 DTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLK 1096
Cdd:TIGR00606 816 QGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELST 895
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1097 TVEELNKSKEllsvenQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVtshqkleeersvlNNQLLE 1176
Cdd:TIGR00606 896 EVQSLIREIK------DAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKV-------------KNIHGY 956
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1177 MKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTlESDKVKLELKVKNLEL 1256
Cdd:TIGR00606 957 MKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQD-NLTLRKRENELKEVEE 1035
|
....*....
gi 1907165148 1257 QLKENKRQL 1265
Cdd:TIGR00606 1036 ELKQHLKEM 1044
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
673-958 |
6.22e-07 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 54.15 E-value: 6.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 673 SLEAVKARLDSAEDQhlvemedtlnKLQEAEIK--VKELEvlqakyteqsevignftsqlsavkEKLLDLDALRKAnseg 750
Cdd:PRK11281 37 TEADVQAQLDALNKQ----------KLLEAEDKlvQQDLE------------------------QTLALLDKIDRQ---- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 751 KLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKeLVLTGLQDSLNQVNQvketlekELQTLKEKFASTSEE 830
Cdd:PRK11281 79 KEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLST-LSLRQLESRLAQTLD-------QLQNAQNDLAEYNSQ 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 831 AVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEndiaeimKMSGDNSSQLTk 910
Cdd:PRK11281 151 LVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQ-------RKSLEGNTQLQ- 222
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1907165148 911 mndELRLKERsvEELQLKLTKANENASFLQKSIGEVTLkaEQSQQQAA 958
Cdd:PRK11281 223 ---DLLQKQR--DYLTARIQRLEHQLQLLQEAINSKRL--TLSEKTVQ 263
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
799-1054 |
9.82e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 9.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 799 LQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDD 878
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 879 REDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMndeLRLKERSVEELQLKLTKanenasfLQKSIGEVTLKAEQSQQQAA 958
Cdd:COG4942 105 ELAELLRALYRLGRQPPLALLLSPEDFLDAVRR---LQYLKYLAPARREQAEE-------LRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 959 RKheeekkeleekllelekkmETSYNQCQDLKAKYEKAssetKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEE 1038
Cdd:COG4942 175 EL-------------------EALLAELEEERAALEAL----KAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
250
....*....|....*.
gi 1907165148 1039 LKTQADKAKAAQTAED 1054
Cdd:COG4942 232 LEAEAAAAAERTPAAG 247
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
890-1278 |
1.34e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 1.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 890 LENDIAEIMKMSGdnsSQLTKMNDELRlkerSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELE 969
Cdd:TIGR02169 140 LQGDVTDFISMSP---VERRKIIDEIA----GVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAER 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 970 ekllelekkmetsYNQCQDLKAKYE-KASSETKTKHEEILQNLQKMLADTE---DKLKAAQEANRDLMQDMEELKTQADK 1045
Cdd:TIGR02169 213 -------------YQALLKEKREYEgYELLKEKEALERQKEAIERQLASLEeelEKLTEEISELEKRLEEIEQLLEELNK 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1046 AKAAQTAEDAMQIMEQMTkektETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETL 1125
Cdd:TIGR02169 280 KIKDLGEEEQLRVKEKIG----ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKL 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1126 KQAAAQKSQQLSAL----QEENVKLAEELGRTRDEVTSHQKLEEERSVLN---NQLLEMKKRESEFRKDADEEKASLQKS 1198
Cdd:TIGR02169 356 TEEYAELKEELEDLraelEEVDKEFAETRDELKDYREKLEKLKREINELKrelDRLQEELQRLSEELADLNAAIAGIEAK 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1199 ISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTlESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEE 1278
Cdd:TIGR02169 436 INELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE-EYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEE 514
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
334-940 |
1.36e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 53.19 E-value: 1.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 334 LLTETSSRYARKISGTTALQEALKEKQQHIEQLLaERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDqlr 413
Cdd:pfam05483 159 LLKETCARSAEKTKKYEYEREETRQVYMDLNNNI-EKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKE--- 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 414 tmVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKSPISEdpENVATVSEKSRIMELE-KDLALRAQEVAE 492
Cdd:pfam05483 235 --INDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQD--ENLKELIEKKDHLTKElEDIKMSLQRSMS 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 493 LRRRLESSKPPGDVDMsLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKL---SKENESL 569
Cdd:pfam05483 311 TQKALEEDLQIATKTI-CQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLkiiTMELQKK 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 570 RSKLDHANK---------ENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIG---TDSAEFAELKTQIERLRLDYQHE 637
Cdd:pfam05483 390 SSELEEMTKfknnkevelEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFllqAREKEIHDLEIQLTAIKTSEEHY 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 638 IESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQhlvemEDTLNKLQEAEIKVKELEVLQAKYT 717
Cdd:pfam05483 470 LKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQ-----EDIINCKKQEERMLKQIENLEEKEM 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 718 ----EQSEVIGNFTSQLSAVKEKL---------LDLDALRKANSEGKLELE--TLRQQLEGAEKQIKNLETERNAESSKA 782
Cdd:pfam05483 545 nlrdELESVREEFIQKGDEVKCKLdkseenarsIEYEVLKKEKQMKILENKcnNLKKQIENKNKNIEELHQENKALKKKG 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 783 NSITKELQEKELVLTGLQDSLNQVNQ----VKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSE 858
Cdd:pfam05483 625 SAENKQLNAYEIKVNKLELELASAKQkfeeIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAE 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 859 LEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDN-SSQLTKMNDELRLKERSVEELQLkltKANENAS 937
Cdd:pfam05483 705 MVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNiKAELLSLKKQLEIEKEEKEKLKM---EAKENTA 781
|
...
gi 1907165148 938 FLQ 940
Cdd:pfam05483 782 ILK 784
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
655-1226 |
2.46e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 52.48 E-value: 2.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 655 EMETMQAKLMKIIKEKEDSLEAVKARLDSAED---QHLVEMEDTLNKLQEAEIKVKELEVLQAKYteqsevignftsQLS 731
Cdd:pfam01576 58 EAEEMRARLAARKQELEEILHELESRLEEEEErsqQLQNEKKKMQQHIQDLEEQLDEEEAARQKL------------QLE 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 732 AV----KEKLLDLDALRKANSEGKLELEtlRQQLEgaeKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVN 807
Cdd:pfam01576 126 KVtteaKIKKLEEDILLLEDQNSKLSKE--RKLLE---ERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 808 QVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQfnvLSSELEKLRENLTDMEAKFKEKDDREDQLVKAK 887
Cdd:pfam01576 201 KGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEE---LQAALARLEEETAQKNNALKKIRELEAQISELQ 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 888 EKLENDIA---EIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHeee 964
Cdd:pfam01576 278 EDLESERAarnKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKH--- 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 965 kkeleeklLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEI---LQNLQKMLADTEDKLKAAQeanrdlmQDMEELKT 1041
Cdd:pfam01576 355 --------TQALEELTEQLEQAKRNKANLEKAKQALESENAELqaeLRTLQQAKQDSEHKRKKLE-------GQLQELQA 419
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1042 QADKAKAAQTaeDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKennlktvEELNKSKELLSVENqkmeefkke 1121
Cdd:pfam01576 420 RLSESERQRA--ELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLE-------SQLQDTQELLQEET--------- 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1122 ietlkQAAAQKSQQLSALQEENVKLAEELgrtRDEVTSHQKLEEERSVLNNQLLEMKKRESEFR---KDADEEKASLQKS 1198
Cdd:pfam01576 482 -----RQKLNLSTRLRQLEDERNSLQEQL---EEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAgtlEALEEGKKRLQRE 553
|
570 580
....*....|....*....|....*...
gi 1907165148 1199 ISLTSALLTEKDAELEKLRNEVTVLRGE 1226
Cdd:pfam01576 554 LEALTQQLEEKAAAYDKLEKTKNRLQQE 581
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
402-1093 |
2.96e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 52.15 E-value: 2.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 402 VLELEAKMDQLRTMVEA--ADREKVELLNQLEEEK--RKVEDLQF--RVEEESITKGDLEQKSPISEDPEnVATVSEKSR 475
Cdd:pfam12128 188 MHSKEGKFRDVKSMIVAilEDDGVVPPKSRLNRQQveHWIRDIQAiaGIMKIRPEFTKLQQEFNTLESAE-LRLSHLHFG 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 476 IMELEKDLALRAQEVAELRRRLESSKPPGDVDMSLS---LLQEISAL-------QEKLEAIHTDH----QGEMTSLKEH- 540
Cdd:pfam12128 267 YKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKrdeLNGELSAAdaavakdRSELEALEDQHgaflDADIETAAADq 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 541 -----FGAREEAFQKEIKALHTATEKLSKENESLRSKLDhanKENSDVIALWKSKLE----------TAIASHQQAME-E 604
Cdd:pfam12128 347 eqlpsWQSELENLEERLKALTGKHQDVTAKYNRRRSKIK---EQNNRDIAGIKDKLAkireardrqlAVAEDDLQALEsE 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 605 LKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAhaKEMETMQAKLMKIIKEKEDsLEAVKARLDSA 684
Cdd:pfam12128 424 LREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFD--ERIERAREEQEAANAEVER-LQSELRQARKR 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 685 EDQHLVemedtlnKLQEAEIKVKELEvlqakyteqsevignftSQLSAVKEKLLDldalrkanSEGKLeLETLRQQLEGA 764
Cdd:pfam12128 501 RDQASE-------ALRQASRRLEERQ-----------------SALDELELQLFP--------QAGTL-LHFLRKEAPDW 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 765 EKQI-KNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVnQVKETLEKElQTLKEKFASTSEEAVSAQTRMQdtvn 843
Cdd:pfam12128 548 EQSIgKVISPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRI-DVPEWAASE-EELRERLDKAEEALQSAREKQA---- 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 844 klhQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKE----KLENDIAEIMKMSGDNSSQLTKMNDELRLKE 919
Cdd:pfam12128 622 ---AAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQsekdKKNKALAERKDSANERLNSLEAQLKQLDKKH 698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 920 RSVEELQ--LKLTKANENASFLQKSIG----------------EVTLKAEQSQQQAARKHEEEKK----ELEEKLLELEK 977
Cdd:pfam12128 699 QAWLEEQkeQKREARTEKQAYWQVVEGaldaqlallkaaiaarRSGAKAELKALETWYKRDLASLgvdpDVIAKLKREIR 778
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 978 KMETSYNQCQDLKAK------------------YEKASSETKTKHEEILQNLQKMLADTEDKLKAAQ---EANRDLMQDM 1036
Cdd:pfam12128 779 TLERKIERIAVRRQEvlryfdwyqetwlqrrprLATQLSNIERAISELQQQLARLIADTKLRRAKLEmerKASEKQQVRL 858
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*....
gi 1907165148 1037 EELKTQAD--KAKAAQTAEDAMQimEQMTKEKTETLASLEDTKQTNARLQNELDTLKEN 1093
Cdd:pfam12128 859 SENLRGLRceMSKLATLKEDANS--EQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEH 915
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
352-1106 |
3.47e-06 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 51.75 E-value: 3.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 352 LQEALKEKQQHIEQLLAERDLERAEVAKATSHVG-----EIEQELALARDGHDQhvleLEAKMDQLRTMVEaaDREKVEL 426
Cdd:pfam10174 1 LQAQLRDLQRENELLRRELDIKESKLGSSMNSIKtfwspELKKERALRKEEAAR----ISVLKEQYRVTQE--ENQHLQL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 427 LNQ-LEEEKRKVEDLQFRVEEESITKGDLEQKSPISEDPENVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPpgd 505
Cdd:pfam10174 75 TIQaLQDELRAQRDLNQLLQQDFTTSPVDGEDKFSTPELTEENFRRLQSEHERQAKELFLLRKTLEEMELRIETQKQ--- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 506 vdmslSLLQEISALQEKLEAIHTDHQGEMTSLKEH-FGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVI 584
Cdd:pfam10174 152 -----TLGARDESIKKLLEMLQSKGLPKKSGEEDWeRTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHRRNQLQPDPA 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 585 ALwkSKLETAIAshqqaMEELKV-SFSKGIGTDSAEFAELKTQIERLRLDYQHEIeslqsKQDSERSAHAKEMETMQAKL 663
Cdd:pfam10174 227 KT--KALQTVIE-----MKDTKIsSLERNIRDLEDEVQMLKTNGLLHTEDREEEI-----KQMEVYKSHSKFMKNKIDQL 294
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 664 MKIIKEKEDSLEAVKARLD------SAEDQHLVEMEDTLN-KLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEK 736
Cdd:pfam10174 295 KQELSKKESELLALQTKLEtltnqnSDCKQHIEVLKESLTaKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEE 374
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 737 LLDLDAlrkansegklELETLRQQLEGAEKQIKNLEternaesSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKE 816
Cdd:pfam10174 375 KSTLAG----------EIRDLKDMLDVKERKINVLQ-------KKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTA 437
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 817 LQTLkekfastsEEAVSAQTRMQDTVNKLHQKEEQfnVLSSELEKLRENLTDMEAKF----KEKDDREDQLVKAKEKLEN 892
Cdd:pfam10174 438 LTTL--------EEALSEKERIIERLKEQREREDR--ERLEELESLKKENKDLKEKVsalqPELTEKESSLIDLKEHASS 507
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 893 DIAEIMKmsgdNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIgEVTLKAEQSQQQAARKHEEEKKELEEKL 972
Cdd:pfam10174 508 LASSGLK----KDSKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRTNP-EINDRIRLLEQEVARYKEESGKAQAEVE 582
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 973 LELEKKMETSyNQCQDLKAKYEKASSETKTKH-EEILQNLQKMLADTEDKLKAAQEanrdlMQDMEELKTQADKAKAAQT 1051
Cdd:pfam10174 583 RLLGILREVE-NEKNDKDKKIAELESLTLRQMkEQNKKVANIKHGQQEMKKKGAQL-----LEEARRREDNLADNSQQLQ 656
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*
gi 1907165148 1052 AEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKE 1106
Cdd:pfam10174 657 LEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQ 711
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
334-1287 |
4.23e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 51.71 E-value: 4.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 334 LLTETSSRYARKISGTTALQEALKEKQQHIEQLlaERDLERAEVAKATSHVGEIEQELALARdgHDQHVLELEAKMDQLR 413
Cdd:pfam01576 76 ILHELESRLEEEEERSQQLQNEKKKMQQHIQDL--EEQLDEEEAARQKLQLEKVTTEAKIKK--LEEDILLLEDQNSKLS 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 414 TMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKspiSEDPENVATVSEKSR------IMELEKDLALRA 487
Cdd:pfam01576 152 KERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEER---LKKEEKGRQELEKAKrklegeSTDLQEQIAELQ 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 488 QEVAELRRRLesSKPPGDVDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENE 567
Cdd:pfam01576 229 AQIAELRAQL--AKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKT 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 568 SLRSKLDHANKENSdvialWKSKLETAIASHQQAMEELKVSFSKGIG----TDSAEFAELKTQIERLRLDYQHeIESLQS 643
Cdd:pfam01576 307 ELEDTLDTTAAQQE-----LRSKREQEVTELKKALEEETRSHEAQLQemrqKHTQALEELTEQLEQAKRNKAN-LEKAKQ 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 644 KQDSERSAHAKEMETMQAKLMKI---IKEKEDSLEAVKARLDSAEDQHlVEMEDTLNKLQeaeikvKELEVLQAKYTEQS 720
Cdd:pfam01576 381 ALESENAELQAELRTLQQAKQDSehkRKKLEGQLQELQARLSESERQR-AELAEKLSKLQ------SELESVSSLLNEAE 453
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 721 EVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLE----GAEKQIKNLETERNAESSKANSITKELQEKELVL 796
Cdd:pfam01576 454 GKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEdernSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKL 533
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 797 TGLQDSLNQVNQVKETLEKELQTLKEKFastsEEAVSAQTRMQDTVNKLHQKEEQfnvLSSELEKLRENLTDMEAKFKEK 876
Cdd:pfam01576 534 EEDAGTLEALEEGKKRLQRELEALTQQL----EEKAAAYDKLEKTKNRLQQELDD---LLVDLDHQRQLVSNLEKKQKKF 606
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 877 DD--REDQLVKAKEKLENDIAEIMKMSGDN-----SSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLK 949
Cdd:pfam01576 607 DQmlAEEKAISARYAEERDRAEAEAREKETralslARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERS 686
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 950 AEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQcQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLK------ 1023
Cdd:pfam01576 687 KRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNM-QALKAQFERDLQARDEQGEEKRRQLVKQVRELEAELEderkqr 765
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1024 -AAQEANRDLMQDMEELKTQADKAKAAQtaEDAMQIMEQMTKEKTETLASLEDTKQTNARLqneLDTLKENN--LKTVE- 1099
Cdd:pfam01576 766 aQAVAAKKKLELDLKELEAQIDAANKGR--EEAVKQLKKLQAQMKDLQRELEEARASRDEI---LAQSKESEkkLKNLEa 840
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1100 ELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEvtshqkLEEERSvlNNQLLEMKK 1179
Cdd:pfam01576 841 ELLQLQEDLAASERARRQAQQERDELADEIASGASGKSALQDEKRRLEARIAQLEEE------LEEEQS--NTELLNDRL 912
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1180 ResefrkdadeeKASLQksisltsalltekdaeLEKLRNEvtvLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLK 1259
Cdd:pfam01576 913 R-----------KSTLQ----------------VEQLTTE---LAAERSTSQKSESARQQLERQNKELKAKLQEMEGTVK 962
|
970 980 990
....*....|....*....|....*....|
gi 1907165148 1260 ENKRQLSSSSGNTDAQAEE--DERAQESQQ 1287
Cdd:pfam01576 963 SKFKSSIAALEAKIAQLEEqlEQESRERQA 992
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
830-1315 |
4.61e-06 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 51.28 E-value: 4.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 830 EAVSAQTRMQDTVNKLHQKEEQFNVLSSELEK----LRENLTDMEAKFKEKDDRedqlVKAKEKLENDIAEIMKMSGDNS 905
Cdd:pfam05557 3 ELIESKARLSQLQNEKKQMELEHKRARIELEKkasaLKRQLDRESDRNQELQKR----IRLLEKREAEAEEALREQAELN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 906 SQLTKMNDELRLKERsveELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKheeekkeleekllelEKKMETSYNQ 985
Cdd:pfam05557 79 RLKKKYLEALNKKLN---EKESQLADAREVISCLKNELSELRRQIQRAELELQST---------------NSELEELQER 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 986 CQDLKAKYEKASsetktKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQadKAKAAQTAEdamqiMEQMTKE 1065
Cdd:pfam05557 141 LDLLKAKASEAE-----QLRQNLEKQQSSLAEAEQRIKELEFEIQSQEQDSEIVKNS--KSELARIPE-----LEKELER 208
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1066 KTETLASLEDTKQTNARLQNELDTLKeNNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQK-------SQQLSA 1138
Cdd:pfam05557 209 LREHNKHLNENIENKLLLKEEVEDLK-RKLEREEKYREEAATLELEKEKLEQELQSWVKLAQDTGLNlrspedlSRRIEQ 287
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1139 LQEENVKLAEELG----RTRDEVTSHQKLEEERSVLNNQLLEMKKResefRKDADEEKASLQKSISLTSallTEKDAELE 1214
Cdd:pfam05557 288 LQQREIVLKEENSsltsSARQLEKARRELEQELAQYLKKIEDLNKK----LKRHKALVRRLQRRVLLLT---KERDGYRA 360
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1215 KLRNEVTVLRGENATAKSLHSVVqtlESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDE----RAQESQQMID 1290
Cdd:pfam05557 361 ILESYDKELTMSNYSPQLLERIE---EAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERElqalRQQESLADPS 437
|
490 500
....*....|....*....|....*
gi 1907165148 1291 FLNSVIVDLQRKNQDLKMKVEMMSE 1315
Cdd:pfam05557 438 YSKEEVDSLRRKLETLELERQRLRE 462
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
987-1311 |
4.63e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.19 E-value: 4.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 987 QDLKAKYEKASSETKTKHEEIlQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKA-----AQTAEDAMQIMEQ 1061
Cdd:PRK02224 240 DEVLEEHEERREELETLEAEI-EDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAeagldDADAEAVEARREE 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1062 MTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVE--------------ELNKSKELLSVENQKMEEFKKEIETLKQ 1127
Cdd:PRK02224 319 LEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEEraeelreeaaelesELEEAREAVEDRREEIEELEEEIEELRE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1128 AAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQ-KLEEERSVL--NNQLLEMKK--------RESEFRKDADEEKASLQ 1196
Cdd:PRK02224 399 RFGDAPVDLGNAEDFLEELREERDELREREAELEaTLRTARERVeeAEALLEAGKcpecgqpvEGSPHVETIEEDRERVE 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1197 ksisltsalltEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQ---LKENKRQLSSS---SG 1270
Cdd:PRK02224 479 -----------ELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERretIEEKRERAEELrerAA 547
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1907165148 1271 NTDAQAEE-DERAQESQQMIDFLNSVIVDLQRKNQDLKMKVE 1311
Cdd:PRK02224 548 ELEAEAEEkREAAAEAEEEAEEAREEVAELNSKLAELKERIE 589
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
409-1035 |
5.34e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 5.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 409 MDQLRTMVEAAD--REKVELLNQLEEEKRKVEDLQFRVEEesitkgdLEQkspisedpenvatVSEKSRIMELEKDLALR 486
Cdd:COG4913 234 FDDLERAHEALEdaREQIELLEPIRELAERYAAARERLAE-------LEY-------------LRAALRLWFAQRRLELL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 487 AQEVAELRRRLESskppgdvdmslsLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKAlhtateklsken 566
Cdd:COG4913 294 EAELEELRAELAR------------LEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIER------------ 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 567 esLRSKLDhankensdvialwksKLETAIASHQQAMEELKVSFSkgigTDSAEFAELKTQIERLRLDYQHEIESLQSKQD 646
Cdd:COG4913 350 --LERELE---------------ERERRRARLEALLAALGLPLP----ASAEEFAALRAEAAALLEALEEELEALEEALA 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 647 SERSAHakemetmqAKLMKIIKEKEDSLEAVKARlDSAEDQHLVEMEDTLNklQEAEIKVKEL----EVLQAKYTEQS-- 720
Cdd:COG4913 409 EAEAAL--------RDLRRELRELEAEIASLERR-KSNIPARLLALRDALA--EALGLDEAELpfvgELIEVRPEEERwr 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 721 ---E-VIGNF-TSQLsaVKEKLLDlDALRKANSEgKLEletLRQQLEGAEKQIKNLETERnaesSKANSITKELQEKELV 795
Cdd:COG4913 478 gaiErVLGGFaLTLL--VPPEHYA-AALRWVNRL-HLR---GRLVYERVRTGLPDPERPR----LDPDSLAGKLDFKPHP 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 796 LTG-LQDSLNQVNQVK--ETLEkELQtlKEKFASTSEEAVSAQTRM----------------QDTVNKLHQKEEQFNVLS 856
Cdd:COG4913 547 FRAwLEAELGRRFDYVcvDSPE-ELR--RHPRAITRAGQVKGNGTRhekddrrrirsryvlgFDNRAKLAALEAELAELE 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 857 SELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDI------AEImkmsGDNSSQLTKM---NDELRLKERSVEELQL 927
Cdd:COG4913 624 EELAEAEERLEALEAELDALQERREALQRLAEYSWDEIdvasaeREI----AELEAELERLdasSDDLAALEEQLEELEA 699
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 928 KLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEkkmetsynqcQDLKAKYEKASSETKTKheEI 1007
Cdd:COG4913 700 ELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELR----------ALLEERFAAALGDAVER--EL 767
|
650 660
....*....|....*....|....*...
gi 1907165148 1008 LQNLQKMLADTEDKLKAAQEANRDLMQD 1035
Cdd:COG4913 768 RENLEERIDALRARLNRAEEELERAMRA 795
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
811-1241 |
8.54e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.15 E-value: 8.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 811 ETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKL 890
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 891 ENDIaeimkmsgdnssQLTKMNDELRLKERSVEELQLKLTKANEnasfLQKSIGEVTLKAEQSQQQAARKHEEEKKELEE 970
Cdd:COG4717 129 PLYQ------------ELEALEAELAELPERLEELEERLEELRE----LEEELEELEAELAELQEELEELLEQLSLATEE 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 971 KLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKML-ADTEDKLKAAQEANRD-------LMQDMEELKTQ 1042
Cdd:COG4717 193 ELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEaAALEERLKEARLLLLIaaallalLGLGGSLLSLI 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1043 ADKAKAAQTAEDAMQIMEQMT-KEKTETLASLEDTKQTNAR-------LQNELDTLKENNLKTVEELNKSKELLSVENQK 1114
Cdd:COG4717 273 LTIAGVLFLVLGLLALLFLLLaREKASLGKEAEELQALPALeeleeeeLEELLAALGLPPDLSPEELLELLDRIEELQEL 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1115 MEEFKKEIETLKQAAAQKSQQlSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEkaS 1194
Cdd:COG4717 353 LREAEELEEELQLEELEQEIA-ALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEE--E 429
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 1907165148 1195 LQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLE 1241
Cdd:COG4717 430 LEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQ 476
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
400-1122 |
9.25e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 9.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 400 QHVLELEAKMDQLRTMVEAADrEKVELLNQLEEEKRKVEDLQfrveeesitkgdleqksPISEDPENVAtvSEKSRIMEL 479
Cdd:COG4913 215 EYMLEEPDTFEAADALVEHFD-DLERAHEALEDAREQIELLE-----------------PIRELAERYA--AARERLAEL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 480 EKDLALRAQEVAELRRRLesskppgdvdmslsLLQEISALQEKLEAihtdHQGEMTSLKehfgAREEAFQKEIKALHTAT 559
Cdd:COG4913 275 EYLRAALRLWFAQRRLEL--------------LEAELEELRAELAR----LEAELERLE----ARLDALREELDELEAQI 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 560 EKLSKEN-ESLRSKLDHANKEnsdvialwKSKLETAIASHQQAMEELKVSFSkgigTDSAEFAELKTQIERLRLDYQHEI 638
Cdd:COG4913 333 RGNGGDRlEQLEREIERLERE--------LEERERRRARLEALLAALGLPLP----ASAEEFAALRAEAAALLEALEEEL 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 639 ESLQSKQDSERSAHAKemetmqakLMKIIKEKEDSLEAVKARlDSAEDQHLVEMEDTLNklQEAEIKVKEL----EVLQA 714
Cdd:COG4913 401 EALEEALAEAEAALRD--------LRRELRELEAEIASLERR-KSNIPARLLALRDALA--EALGLDEAELpfvgELIEV 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 715 KYTEQS-----E-VIGNF-TSQLsaVKEKLLDlDALRKANSEgKLELetlRQQLEGAEKQIKNLETERnaesSKANSITK 787
Cdd:COG4913 470 RPEEERwrgaiErVLGGFaLTLL--VPPEHYA-AALRWVNRL-HLRG---RLVYERVRTGLPDPERPR----LDPDSLAG 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 788 ELQEKELVLTG-LQDSLNQVNQVK--ETLEkELQtlKEKFASTSEEAVSAQTRM----------------QDTVNKLHQK 848
Cdd:COG4913 539 KLDFKPHPFRAwLEAELGRRFDYVcvDSPE-ELR--RHPRAITRAGQVKGNGTRhekddrrrirsryvlgFDNRAKLAAL 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 849 EEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIaeimkmsgdnssqltkmndELRLKERSVEELQLK 928
Cdd:COG4913 616 EAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEI-------------------DVASAEREIAELEAE 676
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 929 LTKANENASFLQksigevTLKAEQSQQQAARK-HEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKtkhEEI 1007
Cdd:COG4913 677 LERLDASSDDLA------ALEEQLEELEAELEeLEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLAR---LEL 747
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1008 LQNLQKMLADTedklkAAQEANRDLMQDMEElKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNEL 1087
Cdd:COG4913 748 RALLEERFAAA-----LGDAVERELRENLEE-RIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALL 821
|
730 740 750
....*....|....*....|....*....|....*
gi 1907165148 1088 DTLKENNLKTVEElnKSKELLsveNQKMEEFKKEI 1122
Cdd:COG4913 822 DRLEEDGLPEYEE--RFKELL---NENSIEFVADL 851
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
708-1263 |
1.04e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 50.29 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 708 ELEVLQAKYTEQSEVIGNFTSQLSavkekllDLDALRKANSEGKLELETLRQQLEGAE-------KQIKNLETERNAESS 780
Cdd:PRK01156 160 EINSLERNYDKLKDVIDMLRAEIS-------NIDYLEEKLKSSNLELENIKKQIADDEkshsitlKEIERLSIEYNNAMD 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 781 KANSITKELQEkelvLTGLQDSLNQVNQVKETLEKELQTLKEKFAS-----------TSEEAVSAQTRMQDTVNKLHQKE 849
Cdd:PRK01156 233 DYNNLKSALNE----LSSLEDMKNRYESEIKTAESDLSMELEKNNYykeleerhmkiINDPVYKNRNYINDYFKYKNDIE 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 850 EQFNVLS---SELEKLREN---LTDMEA---KFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKER 920
Cdd:PRK01156 309 NKKQILSnidAEINKYHAIikkLSVLQKdynDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIER 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 921 SVEELQLKLTKANENASFLQKSIGEVTLKAEQ-SQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSE 999
Cdd:PRK01156 389 MSAFISEILKIQEIDPDAIKKELNEINVKLQDiSSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSN 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1000 TKTKH-EEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELktQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQ 1078
Cdd:PRK01156 469 HIINHyNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYL--ESEEINKSINEYNKIESARADLEDIKIKINELKDKHD 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1079 TNARLQNELDTLKENNL--KTVEELNKSKELLSVENQKMEEFKKEIET-LKQAAAQKSQQLSALQEENVKLAEELGRTRD 1155
Cdd:PRK01156 547 KYEEIKNRYKSLKLEDLdsKRTSWLNALAVISLIDIETNRSRSNEIKKqLNDLESRLQEIEIGFPDDKSYIDKSIREIEN 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1156 EVTSHQKLEEERSVLNNQLLEMKKRESEFRKDAdEEKASLQKSISLTSALLTEKDAELEKLRNEvtvLRGENATAKSLHS 1235
Cdd:PRK01156 627 EANNLNNKYNEIQENKILIEKLRGKIDNYKKQI-AEIDSIIPDLKEITSRINDIEDNLKKSRKA---LDDAKANRARLES 702
|
570 580
....*....|....*....|....*...
gi 1907165148 1236 VVQTLESDKVKLELKVKNLELQLKENKR 1263
Cdd:PRK01156 703 TIEILRTRINELSDRINDINETLESMKK 730
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1008-1225 |
2.16e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 2.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1008 LQNLQKMLADTEDKLKAAQEAnRDLMQDMEELKTQADKA---KAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQ 1084
Cdd:COG4913 237 LERAHEALEDAREQIELLEPI-RELAERYAAARERLAELeylRAALRLWFAQRRLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1085 NELDTLKEnnlkTVEELnkSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEenvkLAEELGrtrdevtshQKLE 1164
Cdd:COG4913 316 ARLDALRE----ELDEL--EAQIRGNGGDRLEQLEREIERLERELEERERRRARLEA----LLAALG---------LPLP 376
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907165148 1165 EERSvlnnQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRG 1225
Cdd:COG4913 377 ASAE----EFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
554-1254 |
2.84e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 48.89 E-value: 2.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 554 ALHTATEKLSKENESLRSKldHANKENSDVIalwkSKLETAIASHQQAMEELKV-SFSKGIGTDSAEFAELKTQIerlrl 632
Cdd:TIGR01612 1048 AIHTSIYNIIDEIEKEIGK--NIELLNKEIL----EEAEINITNFNEIKEKLKHyNFDDFGKEENIKYADEINKI----- 1116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 633 dyQHEIESLQSKQDSersaHAKEMEtmqaklmKIIKEKEDSLEAVKARLDSAEDqhlveMEDTLNKLQEAEIKVKELEVL 712
Cdd:TIGR01612 1117 --KDDIKNLDQKIDH----HIKALE-------EIKKKSENYIDEIKAQINDLED-----VADKAISNDDPEEIEKKIENI 1178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 713 QAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRK--------ANSEGKLELETLRQQLEGAEKQIKNLEternAESSKANS 784
Cdd:TIGR01612 1179 VTKIDKKKNIYDEIKKLLNEIAEIEKDKTSLEEvkginlsyGKNLGKLFLEKIDEEKKKSEHMIKAME----AYIEDLDE 1254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 785 ITKELQEKELVLTGLQDslnqvnqvketLEKELQTLkekfastseeavsaqtrmqdtvNKLHQKEEQFNVLSSELEKLRE 864
Cdd:TIGR01612 1255 IKEKSPEIENEMGIEMD-----------IKAEMETF----------------------NISHDDDKDHHIISKKHDENIS 1301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 865 NLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGD---------NSSQLTKMN------DELRLKERSVEELQLKL 929
Cdd:TIGR01612 1302 DIREKSLKIIEDFSEESDINDIKKELQKNLLDAQKHNSDinlylneiaNIYNILKLNkikkiiDEVKEYTKEIEENNKNI 1381
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 930 TKANENASFLQKSIGE-VTLKAEQSQQQAA--RKHEEEKKELEEKLLELEKKMETSYNqcqdlkaKYEKASSETKTKHEE 1006
Cdd:TIGR01612 1382 KDELDKSEKLIKKIKDdINLEECKSKIESTldDKDIDECIKKIKELKNHILSEESNID-------TYFKNADENNENVLL 1454
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1007 ILQNLQKMLADTEDKLKAAQE-ANRDLMQDMEELKTQADKAKAAQTAEDA--------MQIMEQMTKEKTETLasledTK 1077
Cdd:TIGR01612 1455 LFKNIEMADNKSQHILKIKKDnATNDHDFNINELKEHIDKSKGCKDEADKnakaieknKELFEQYKKDVTELL-----NK 1529
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1078 QTNARLQNELDTLKENNLKTVEELNKSKELLSVE----NQKMEEFKKEIETLKQAAAQKSQ--------QLSALQEEN-- 1143
Cdd:TIGR01612 1530 YSALAIKNKFAKTKKDSEIIIKEIKDAHKKFILEaeksEQKIKEIKKEKFRIEDDAAKNDKsnkaaidiQLSLENFENkf 1609
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1144 VKLAEELGRTRDEVTSHQKLEEERSVL--NNQLLEMKKRESEFR--KDADEEKASLQKSISLTSALLTEKDAELEKLRN- 1218
Cdd:TIGR01612 1610 LKISDIKKKINDCLKETESIEKKISSFsiDSQDTELKENGDNLNslQEFLESLKDQKKNIEDKKKELDELDSEIEKIEId 1689
|
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 1907165148 1219 --------EVTVLRGENATAKSLHsvvQTLESDKVKLELKVKNL 1254
Cdd:TIGR01612 1690 vdqhkknyEIGIIEKIKEIAIANK---EEIESIKELIEPTIENL 1730
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
759-1183 |
3.49e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 48.54 E-value: 3.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 759 QQLEGAEKQIKNLETErNAESSKANSITKELQEKELVLT-GLQDSLNQVNQVKETLEKELQTLKEKfaSTSEEAVSAQTR 837
Cdd:COG5022 875 QRVELAERQLQELKID-VKSISSLKLVNLELESEIIELKkSLSSDLIENLEFKTELIARLKKLLNN--IDLEEGPSIEYV 951
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 838 MQDTVNKLHQKEeqfnvlsSELEKLRENLTDMeakFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSqLTKMNDELRL 917
Cdd:COG5022 952 KLPELNKLHEVE-------SKLKETSEEYEDL---LKKSTILVREGNKANSELKNFKKELAELSKQYGA-LQESTKQLKE 1020
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 918 KERSVEELQLKLTKANENASFL------QKSIGEVTLKAEQSQQQAarKHEEEKKELEEKLLELEKKMETSYNQCQDLKA 991
Cdd:COG5022 1021 LPVEVAELQSASKIISSESTELsilkplQKLKGLLLLENNQLQARY--KALKLRRENSLLDDKQLYQLESTENLLKTINV 1098
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 992 KYEKASSETKTKHEEILQNLqkmladtedklkAAQEANRDLMQDMEELKTQadkakAAQTAEDAMQIME--QMTKEKTET 1069
Cdd:COG5022 1099 KDLEVTNRNLVKPANVLQFI------------VAQMIKLNLLQEISKFLSQ-----LVNTLEPVFQKLSvlQLELDGLFW 1161
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1070 LASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETL-KQAAAQKSQQLSALQEENVKLAE 1148
Cdd:COG5022 1162 EANLEALPSPPPFAALSEKRLYQSALYDEKSKLSSSEVNDLKNELIALFSKIFSGWpRGDKLKKLISEGWVPTEYSTSLK 1241
|
410 420 430
....*....|....*....|....*....|....*....
gi 1907165148 1149 ELGRTRDEVTSHQKL--EEERSVLN--NQLLEMKKRESE 1183
Cdd:COG5022 1242 GFNNLNKKFDTPASMsnEKLLSLLNsiDNLLSSYKLEEE 1280
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
878-1092 |
3.62e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 3.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 878 DREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLK-AEQSQQQ 956
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEiAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 957 AARKHEEEKKELEEKLLELEKKMETSYNQCQDLKA----KYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDL 1032
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAvrrlQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1033 MQDMEELKTQADKAKAAQTaedamQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKE 1092
Cdd:COG4942 180 LAELEEERAALEALKAERQ-----KLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
990-1340 |
3.87e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.60 E-value: 3.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 990 KAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKE---K 1066
Cdd:PTZ00121 1110 KAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEevrK 1189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1067 TETLASLEDTKQTNARLQNEldtlkenNLKTVEELNKSKELLSVEN-QKMEEFKKEIETLKQAAAQKSQqlsalqEENVK 1145
Cdd:PTZ00121 1190 AEELRKAEDARKAEAARKAE-------EERKAEEARKAEDAKKAEAvKKAEEAKKDAEEAKKAEEERNN------EEIRK 1256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1146 LAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRG 1225
Cdd:PTZ00121 1257 FEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKK 1336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1226 ENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQQMIDFLNSVIVDLQRKNQD 1305
Cdd:PTZ00121 1337 KAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAA 1416
|
330 340 350
....*....|....*....|....*....|....*
gi 1907165148 1306 LKMKVEMMSEAALNGNGEDLNSYDSDDQEKQSKKK 1340
Cdd:PTZ00121 1417 KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKK 1451
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
984-1340 |
3.93e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 48.54 E-value: 3.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 984 NQCQDLKAKYEKASSETKTKHEEILQnLQKMLADTEDKLKAAQEANRdlmqdMEELKTQ-ADKAKAAQTAEDAMQIMEQM 1062
Cdd:COG5022 831 KLRETEEVEFSLKAEVLIQKFGRSLK-AKKRFSLLKKETIYLQSAQR-----VELAERQlQELKIDVKSISSLKLVNLEL 904
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1063 TKEKTETLASLEDTKQTNARLQNELDT-LKENNLKTVEELNKSKELlsVENQKMEEFKKEIETLKQAAAQKS---QQLSA 1138
Cdd:COG5022 905 ESEIIELKKSLSSDLIENLEFKTELIArLKKLLNNIDLEEGPSIEY--VKLPELNKLHEVESKLKETSEEYEdllKKSTI 982
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1139 LQEENVKLAEELGRTRDEVTSHQKleeERSVLNNQLLEMKKRESE---------FRKDADEEKASLQKSISLTSALLtek 1209
Cdd:COG5022 983 LVREGNKANSELKNFKKELAELSK---QYGALQESTKQLKELPVEvaelqsaskIISSESTELSILKPLQKLKGLLL--- 1056
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1210 dAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKL-ELKVKNLELqlkeNKRQLSSSSGNTDAQAEEDERAQESQQM 1288
Cdd:COG5022 1057 -LENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLkTINVKDLEV----TNRNLVKPANVLQFIVAQMIKLNLLQEI 1131
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 1907165148 1289 IDFLNSVIVDLQRKNQDLKMKVEMMSEAALNGNGEDLNSYDSDDQEKQSKKK 1340
Cdd:COG5022 1132 SKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALSEKRLY 1183
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1046-1282 |
4.09e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 4.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1046 AKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKEnnlktveELNKSKELLSVENQKMEEFKKEIETL 1125
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALER-------RIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1126 KQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSAL 1205
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165148 1206 LTEKDAELEKLRNEVTVLRGENATAKSLH-SVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERA 1282
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERqKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
351-579 |
4.83e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 4.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 351 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARdghdQHVLELEAKMDQLRTMVEAADREKVELLNQL 430
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA----RRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 431 EEEKRKVEDL---QFRVEEESITKGDLEQKSPisedpenvatvSEKSRIMELEKDLA-LRAQEVAELRRRLESSKppgdv 506
Cdd:COG4942 100 EAQKEELAELlraLYRLGRQPPLALLLSPEDF-----------LDAVRRLQYLKYLApARREQAEELRADLAELA----- 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907165148 507 dmslSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEA---FQKEIKALHTATEKLSKENESLRSKLDHANKE 579
Cdd:COG4942 164 ----ALRAELEAERAELEALLAELEEERAALEALKAERQKLlarLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
655-827 |
6.24e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.07 E-value: 6.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 655 EMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHlvemEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNftsqlsaVK 734
Cdd:COG1579 21 RLEHRLKELPAELAELEDELAALEARLEAAKTEL----EDLEKEIKRLELEIEEVEARIKKYEEQLGNVRN-------NK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 735 EklldLDALRKansegklELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLE 814
Cdd:COG1579 90 E----YEALQK-------EIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAEL 158
|
170
....*....|...
gi 1907165148 815 KELQTLKEKFAST 827
Cdd:COG1579 159 EELEAEREELAAK 171
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
475-920 |
6.76e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 47.64 E-value: 6.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 475 RIMELEKDLALRAQEVAELRRRLesskppgdVDMSlSLLQEISALQEKLEAihtDHQgemtSLKEHFGAREEAFQkeika 554
Cdd:COG3096 286 RALELRRELFGARRQLAEEQYRL--------VEMA-RELEELSARESDLEQ---DYQ----AASDHLNLVQTALR----- 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 555 lhtATEKLSK---ENESLRSKLDhankENSDVIALWKSKLETAIASHQQAMEELKvsfskgigtdsaefaELKTQIErlr 631
Cdd:COG3096 345 ---QQEKIERyqeDLEELTERLE----EQEEVVEEAAEQLAEAEARLEAAEEEVD---------------SLKSQLA--- 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 632 lDYQHEIESLQSKQDSERSA-HAKEMETMQAKLMKI-IKEKEDSLEAVKARLDSAeDQHLVEMEDTLNKLQEAEI---KV 706
Cdd:COG3096 400 -DYQQALDVQQTRAIQYQQAvQALEKARALCGLPDLtPENAEDYLAAFRAKEQQA-TEEVLELEQKLSVADAARRqfeKA 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 707 KELEVLQAKYTEQSEVIGNFTSQLSAVKEklLDLDALRKANSEGKL-ELETLRQQLEGAEKQIKNLETERNAESSKANSI 785
Cdd:COG3096 478 YELVCKIAGEVERSQAWQTARELLRRYRS--QQALAQRLQQLRAQLaELEQRLRQQQNAERLLEEFCQRIGQQLDAAEEL 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 786 TKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEA---VSAQTRMQDTVNKLHQKEEQFNVLSSELEKL 862
Cdd:COG3096 556 EELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARApawLAAQDALERLREQSGEALADSQEVTAAMQQL 635
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165148 863 RENLTDMEAKfkekddrEDQLVKAKEKLENDIAEIMKMSGDNSSQLtkmndeLRLKER 920
Cdd:COG3096 636 LEREREATVE-------RDELAARKQALESQIERLSQPGGAEDPRL------LALAER 680
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1081-1226 |
7.42e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.69 E-value: 7.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1081 ARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRD--EVT 1158
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkEYE 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907165148 1159 SHQK----LEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGE 1226
Cdd:COG1579 93 ALQKeiesLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE 164
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
335-570 |
7.60e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 7.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 335 LTETSSRYARKISGTTALQEALKEKQQHIEQLlAERDLERAEVAKATSHVGEIEQELALARDGHD------QHVLELEAK 408
Cdd:COG4913 622 LEEELAEAEERLEALEAELDALQERREALQRL-AEYSWDEIDVASAEREIAELEAELERLDASSDdlaaleEQLEELEAE 700
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 409 MDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEE-----ESITKGDLEQKSPISEDPENVATVSEK--SRIMELEK 481
Cdd:COG4913 701 LEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAaedlaRLELRALLEERFAAALGDAVERELRENleERIDALRA 780
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 482 DLALRAQEVAELRRRLESSKPPGDVDMSLSL--LQEISALQEKLEAIH-TDHQGEMTSLKEHFGARE-EAFQKEIK-ALH 556
Cdd:COG4913 781 RLNRAEEELERAMRAFNREWPAETADLDADLesLPEYLALLDRLEEDGlPEYEERFKELLNENSIEFvADLLSKLRrAIR 860
|
250
....*....|....
gi 1907165148 557 TATEKLSKENESLR 570
Cdd:COG4913 861 EIKERIDPLNDSLK 874
|
|
| COG4487 |
COG4487 |
Uncharacterized conserved protein, contains DUF2130 domain [Function unknown]; |
987-1136 |
7.91e-05 |
|
Uncharacterized conserved protein, contains DUF2130 domain [Function unknown];
Pssm-ID: 443580 [Multi-domain] Cd Length: 425 Bit Score: 46.86 E-value: 7.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 987 QDLKAKYEKASSETKTKHEEILQNLQKMLADTEDK--LKAAQEANRDLMQDMEELKTQADKAKAAQTAEdamqiMEQMTK 1064
Cdd:COG4487 50 ELAEAKAKAQLQEQVAEKDAEIAELRARLEAEERKkaLAVAEEKEKELAALQEALAEKDAKLAELQAKE-----LELLKK 124
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907165148 1065 EKTETLASLEDTKQTNARLQNELDTLKEN-NLKTVEELNKSKELLSVENQK-MEEFKKEIETLKQAAAQKSQQL 1136
Cdd:COG4487 125 ERELEDAKREAELTVEKERDEELDELKEKlKKEEEEKQLAEKSLKVAEYEKqLKDMQEQIEELKRKKEQGSTQL 198
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
355-501 |
9.30e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 46.77 E-value: 9.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 355 ALKEKQQHIEQLLAE---RDLERAEVAKATS-----------HVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAAD 420
Cdd:COG2433 347 AYKNKFERVEKKVPPdvdRDEVKARVIRGLSieealeeliekELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLE 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 421 REKVELLNQLEEEKRKVEDLQFRVEEESItkgdlEQKSPISEDPEnvaTVSEKSRIMELEKDLALRAQEVAELRRRLESS 500
Cdd:COG2433 427 AEVEELEAELEEKDERIERLERELSEARS-----EERREIRKDRE---ISRLDREIERLERELEEERERIEELKRKLERL 498
|
.
gi 1907165148 501 K 501
Cdd:COG2433 499 K 499
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
828-1216 |
1.02e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 47.26 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 828 SEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDR-------------EDQLVKAKEKLENDI 894
Cdd:PRK04863 285 LEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHlnlvqtalrqqekIERYQADLEELEERL 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 895 AEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKsigevtlKAEQSQQ--QAARKHEEEKKELEEKL 972
Cdd:PRK04863 365 EEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQT-------RAIQYQQavQALERAKQLCGLPDLTA 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 973 LELEKKMETSYNQCQDLKAKYEKA------SSETKTKHEEILQNLQKMLADTEDklKAAQEANRDLMQDMEELKTQADKA 1046
Cdd:PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLeqklsvAQAAHSQFEQAYQLVRKIAGEVSR--SEAWDVARELLRRLREQRHLAEQL 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1047 KAAQTA-----------EDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKennlktvEELNKSKELLSVENQKM 1115
Cdd:PRK04863 516 QQLRMRlseleqrlrqqQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLS-------ESVSEARERRMALRQQL 588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1116 EEFKKEIETLkqaaAQKSQQLSALQEENVKLAEELGrtrDEVTSHQKLEEERSvlnnQLLEMKKRESEFRKDADEEKASL 1195
Cdd:PRK04863 589 EQLQARIQRL----AARAPAWLAAQDALARLREQSG---EEFEDSQDVTEYMQ----QLLERERELTVERDELAARKQAL 657
|
410 420
....*....|....*....|.
gi 1907165148 1196 QKSISLTSALLTEKDAELEKL 1216
Cdd:PRK04863 658 DEEIERLSQPGGSEDPRLNAL 678
|
|
| CLIP1_ZNF |
pfam16641 |
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of ... |
1342-1359 |
1.22e-04 |
|
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of the cytoplasmic linker protein CLIP1 (CLIP170). It forms a complex with the CAP-Gly domain of Dynactin.
Pssm-ID: 465212 Cd Length: 17 Bit Score: 40.14 E-value: 1.22e-04
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
478-1183 |
1.30e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 46.35 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 478 ELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSLlqEISALQEKLEA-------IHTDHQGEMTSLKEHFGAREEAfQK 550
Cdd:pfam10174 40 ELKKERALRKEEAARISVLKEQYRVTQEENQHLQL--TIQALQDELRAqrdlnqlLQQDFTTSPVDGEDKFSTPELT-EE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 551 EIKALHTATEKLSKENESLRSKLDHankensdvialwkskLETAIASHQQAMEelkvsfskgigtdsAEFAELKTQIERL 630
Cdd:pfam10174 117 NFRRLQSEHERQAKELFLLRKTLEE---------------MELRIETQKQTLG--------------ARDESIKKLLEML 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 631 RLDYQheiESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEdsleavkarldsAEDQHLVEMEDTLNKLQEAEIKVKELE 710
Cdd:pfam10174 168 QSKGL---PKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKE------------KENIHLREELHRRNQLQPDPAKTKALQ 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 711 vlqakyteqsEVIGNFTSQLSAVKEKLLDL-DALRKANSEGKLELETLRQQLegaeKQIKNLETERNAESSKANSITKEL 789
Cdd:pfam10174 233 ----------TVIEMKDTKISSLERNIRDLeDEVQMLKTNGLLHTEDREEEI----KQMEVYKSHSKFMKNKIDQLKQEL 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 790 QEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLREN---- 865
Cdd:pfam10174 299 SKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEkstl 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 866 ---LTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKM--------------SGDNSSQLTKMNDELRLKERSVEELQLK 928
Cdd:pfam10174 379 ageIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQlaglkervkslqtdSSNTDTALTTLEEALSEKERIIERLKEQ 458
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 929 ltKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEIL 1008
Cdd:pfam10174 459 --REREDRERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKL 536
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1009 QNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQT-AEDAMQIMEQMTKEKT---ETLASLEDTKQTNARLQ 1084
Cdd:pfam10174 537 ENQLKKAHNAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAeVERLLGILREVENEKNdkdKKIAELESLTLRQMKEQ 616
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1085 NeldtLKENNLKTVEELNKSKELlsvenQKMEEFKKEIETLKQAAAQksQQLSALQEENVKLAEELGRTRDEVTS-HQKL 1163
Cdd:pfam10174 617 N----KKVANIKHGQQEMKKKGA-----QLLEEARRREDNLADNSQQ--LQLEELMGALEKTRQELDATKARLSStQQSL 685
|
730 740
....*....|....*....|
gi 1907165148 1164 EEERSVLNNQLLEMKKRESE 1183
Cdd:pfam10174 686 AEKDGHLTNLRAERRKQLEE 705
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
754-1343 |
1.57e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.37 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 754 LETLRQQLEGAEKQIKNLETernAESSKANSITKELQEKELVLTGLQDslnQVNQVKETLEKELQTLKEKFASTSE--EA 831
Cdd:pfam12128 253 LESAELRLSHLHFGYKSDET---LIASRQEERQETSAELNQLLRTLDD---QWKEKRDELNGELSAADAAVAKDRSelEA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 832 VSAQTR--MQDTVNKLHQKEEQFNVLSSELEKLRENLT-------DMEAKF-----KEKDDREDQLVKAKEKLENDIAEI 897
Cdd:pfam12128 327 LEDQHGafLDADIETAAADQEQLPSWQSELENLEERLKaltgkhqDVTAKYnrrrsKIKEQNNRDIAGIKDKLAKIREAR 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 898 MKMSGDNSSQLTKMNDELRlkersvEELQLKLTKANENASFLQKSIGEvtLKAEQSQQQAarkheeekkeleekLLELEK 977
Cdd:pfam12128 407 DRQLAVAEDDLQALESELR------EQLEAGKLEFNEEEYRLKSRLGE--LKLRLNQATA--------------TPELLL 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 978 KMETSYNQCQDLKAKYEKASSETKTKHEEILQnLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAkaAQTAEDAMQ 1057
Cdd:pfam12128 465 QLENFDERIERAREEQEAANAEVERLQSELRQ-ARKRRDQASEALRQASRRLEERQSALDELELQLFPQ--AGTLLHFLR 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1058 IMEQMTKEKTETLASLEDTKQTNarLQNELDTLKENNLKTVEELNkskelLSVENQKMEEFKKEIETLKQAAAQKSQQLS 1137
Cdd:pfam12128 542 KEAPDWEQSIGKVISPELLHRTD--LDPEVWDGSVGGELNLYGVK-----LDLKRIDVPEWAASEEELRERLDKAEEALQ 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1138 ALQEENVKLAEELGRTRDEVTSHQK-LEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKL 1216
Cdd:pfam12128 615 SAREKQAAAEEQLVQANGELEKASReETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQL 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1217 RNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKnlELQLKENKRQLSSSSGNTDAQAEEDERAQESQQMIDflNSVI 1296
Cdd:pfam12128 695 DKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQ--LALLKAAIAARRSGAKAELKALETWYKRDLASLGVD--PDVI 770
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 1907165148 1297 VDLQRKNQDLKMKVEMMSeaalnGNGEDLNSYDSDDQEKQSKKKPRL 1343
Cdd:pfam12128 771 AKLKREIRTLERKIERIA-----VRRQEVLRYFDWYQETWLQRRPRL 812
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
618-1065 |
1.63e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 618 AEFAELKTQIERLRldyqHEIESLQSKQDS-ERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEdQHLVEMEDTL 696
Cdd:COG4717 88 EEYAELQEELEELE----EELEELEAELEElREELEKLEKLLQLLPLYQELEALEAELAELPERLEELE-ERLEELRELE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 697 NKLQEAEikvKELEVLQAKYTEQSEVIGNftSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERN 776
Cdd:COG4717 163 EELEELE---AELAELQEELEELLEQLSL--ATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELE 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 777 AEsskanSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQfnvls 856
Cdd:COG4717 238 AA-----ALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEEL----- 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 857 sELEKLRENLTDMEAKfkekddredQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENA 936
Cdd:COG4717 308 -QALPALEELEEEELE---------ELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLA 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 937 SFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEiLQNLQKMLA 1016
Cdd:COG4717 378 EAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEE-LEELREELA 456
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 1907165148 1017 DTEDKLKAAQEANR--DLMQDMEELKTQ-ADKAKAAQTAEDAMQIMEQMTKE 1065
Cdd:COG4717 457 ELEAELEQLEEDGElaELLQELEELKAElRELAEEWAALKLALELLEEAREE 508
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
983-1159 |
1.72e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.59 E-value: 1.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 983 YNQCQDLKAKYEKASSETKTKHEEIlQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADK------AKAAQTAEDAM 1056
Cdd:COG3883 43 QAELEELNEEYNELQAELEALQAEI-DKLQAEIAEAEAEIEERREELGERARALYRSGGSVSYldvllgSESFSDFLDRL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1057 QIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLsveNQKMEEFKKEIETLKQAAAQKSQQL 1136
Cdd:COG3883 122 SALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAEL---EAQQAEQEALLAQLSAEEAAAEAQL 198
|
170 180
....*....|....*....|...
gi 1907165148 1137 SALQEENVKLAEELGRTRDEVTS 1159
Cdd:COG3883 199 AELEAELAAAEAAAAAAAAAAAA 221
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
972-1281 |
1.82e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.12 E-value: 1.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 972 LLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQT 1051
Cdd:pfam02463 192 LEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVL 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1052 AEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQK-----MEEFKKEIETLK 1126
Cdd:pfam02463 272 KENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKeeieeLEKELKELEIKR 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1127 QAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALL 1206
Cdd:pfam02463 352 EAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEI 431
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907165148 1207 TEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDER 1281
Cdd:pfam02463 432 LEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKAR 506
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
1092-1340 |
1.85e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 45.72 E-value: 1.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1092 ENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAA----AQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEER 1167
Cdd:COG5185 232 EEALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEKlgenAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKAT 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1168 SVLNNQLLEMKKrESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKS---LHSVVQTLESDK 1244
Cdd:COG5185 312 ESLEEQLAAAEA-EQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVELSKSseeLDSFKDTIESTK 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1245 VKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAqesqqmIDFLNSVIVDLQRKNQDL-KMKVEMMSEAALNGNGE 1323
Cdd:COG5185 391 ESLDEIPQNQRGYAQEILATLEDTLKAADRQIEELQRQ------IEQATSSNEEVSKLLNELiSELNKVMREADEESQSR 464
|
250
....*....|....*..
gi 1907165148 1324 DLNSYDSDDQEKQSKKK 1340
Cdd:COG5185 465 LEEAYDEINRSVRSKKE 481
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
811-929 |
2.04e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 45.62 E-value: 2.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 811 ETLEKELQTLKEKfaSTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDR----EDQLVKA 886
Cdd:COG2433 376 LSIEEALEELIEK--ELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERierlERELSEA 453
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1907165148 887 KEKLENDI---AEIMKMSGDNsSQLTKmndELRLKERSVEELQLKL 929
Cdd:COG2433 454 RSEERREIrkdREISRLDREI-ERLER---ELEEERERIEELKRKL 495
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
404-848 |
2.41e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 2.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 404 ELEAKMDQLRTmVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKSPISEdpENVATVSEKSRIMELEKDL 483
Cdd:COG4717 75 ELEEELKEAEE-KEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQ--ELEALEAELAELPERLEEL 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 484 ALRAQEVAELRRRLESskppgdvdmslsLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLS 563
Cdd:COG4717 152 EERLEELRELEEELEE------------LEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQ 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 564 KENESLRSKLD-------HANKENSDVIALWKSKLETAIASHQQAMEELKVSFSK---------GIGTDSAEFAELKTQI 627
Cdd:COG4717 220 EELEELEEELEqleneleAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTiagvlflvlGLLALLFLLLAREKAS 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 628 ERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQH----LVEMEDTLNKLQeAE 703
Cdd:COG4717 300 LGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEeelqLEELEQEIAALL-AE 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 704 IKVKELEVLQAKYTEQSEVIgNFTSQLSAVKEKLLDLDALRKANSEgKLELETLRQQLEGAEKQIKNLETERNAESSKAN 783
Cdd:COG4717 379 AGVEDEEELRAALEQAEEYQ-ELKEELEELEEQLEELLGELEELLE-ALDEEELEEELEELEEELEELEEELEELREELA 456
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907165148 784 SITKELQEKElvltgLQDSLNQVNQVKETLEKELQTLKEKFAStseeAVSAQTRMQDTVNKLHQK 848
Cdd:COG4717 457 ELEAELEQLE-----EDGELAELLQELEELKAELRELAEEWAA----LKLALELLEEAREEYREE 512
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
546-870 |
3.82e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 44.95 E-value: 3.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 546 EAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAE----FA 621
Cdd:COG5185 242 ESELEDLAQTSDKLEKLVEQNTDLRLEKLGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKATESLEeqlaAA 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 622 ELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEdsLEAVKARLDSAEDQHLVEMEDTLNKLQE 701
Cdd:COG5185 322 EAEQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVE--LSKSSEELDSFKDTIESTKESLDEIPQN 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 702 AEIKVKE-LEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESS 780
Cdd:COG5185 400 QRGYAQEiLATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREADEESQSRLEEAYDEINRSVRSK 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 781 KANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQ----TRMQDTVNKLHQKEEQFNVLS 856
Cdd:COG5185 480 KEDLNEELTQIESRVSTLKATLEKLRAKLERQLEGVRSKLDQVAESLKDFMRARGyahiLALENLIPASELIQASNAKTD 559
|
330
....*....|....
gi 1907165148 857 SELEKLRENLTDME 870
Cdd:COG5185 560 GQAANLRTAVIDEL 573
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
649-894 |
3.92e-04 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 45.02 E-value: 3.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 649 RSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTS 728
Cdd:pfam05667 231 LASRLTPEEYRKRKRTKLLKRIAEQLRSAALAGTEATSGASRSAQDLAELLSSFSGSSTTDTGLTKGSRFTHTEKLQFTN 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 729 QLSAVKEKLL----DLDALRKANSEgklELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLN 804
Cdd:pfam05667 311 EAPAATSSPPtkveTEEELQQQREE---ELEELQEQLEDLESSIQELEKEIKKLESSIKQVEEELEELKEQNEELEKQYK 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 805 ------------QVNQVKetLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQ----KEEQFNVLSSELEKLRENLTD 868
Cdd:pfam05667 388 vkkktldllpdaEENIAK--LQALVDASAQRLVELAGQWEKHRVPLIEEYRALKEaksnKEDESQRKLEEIKELREKIKE 465
|
250 260
....*....|....*....|....*.
gi 1907165148 869 MEAKFKEKDDREDQLVKAKEKLENDI 894
Cdd:pfam05667 466 VAEEAKQKEELYKQLVAEYERLPKDV 491
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
541-944 |
4.78e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.95 E-value: 4.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 541 FG--ARE---EAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALW-KSKLETAIASHQQAMEELkvsfskgig 614
Cdd:PRK04863 779 FGraAREkriEQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAfEADPEAELRQLNRRRVEL--------- 849
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 615 tdSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAvkARLDSAEDQHLVEMED 694
Cdd:PRK04863 850 --ERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLADRVEEIREQLDEAEEA--KRFVQQHGNALAQLEP 925
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 695 TLNKLQEAEikvKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLE-----LETLRQQLEGAEKQIK 769
Cdd:PRK04863 926 IVSVLQSDP---EQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAknsdlNEKLRQRLEQAEQERT 1002
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 770 NLETE-RNAESskansitkELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQtrmQDTVNK-LHQ 847
Cdd:PRK04863 1003 RAREQlRQAQA--------QLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARAR---RDELHArLSA 1071
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 848 KEEQFNVLSSELEKLRENLTDMEAKFK--EKD--DREDQLVKAKekleNDIAEIMKMSGDNSsqltkmnDELRLKERSVE 923
Cdd:PRK04863 1072 NRSRRNQLEKQLTFCEAEMDNLTKKLRklERDyhEMREQVVNAK----AGWCAVLRLVKDNG-------VERRLHRRELA 1140
|
410 420
....*....|....*....|.
gi 1907165148 924 ELqlkltKANENASFLQKSIG 944
Cdd:PRK04863 1141 YL-----SADELRSMSDKALG 1156
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
635-876 |
5.83e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 5.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 635 QHEIESLQSKQDSERSAhAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQhLVEMEDTLNKLQeaeikvKELEVLQA 714
Cdd:COG4942 26 EAELEQLQQEIAELEKE-LAALKKEEKALLKQLAALERRIAALARRIRALEQE-LAALEAELAELE------KEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 715 KYTEQSEVIGNFtsqlsavkeklldLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEkel 794
Cdd:COG4942 98 ELEAQKEELAEL-------------LRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE--- 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 795 vLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFK 874
Cdd:COG4942 162 -LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
..
gi 1907165148 875 EK 876
Cdd:COG4942 241 ER 242
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
376-1117 |
6.36e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.27 E-value: 6.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 376 EVAKATSHVGEIEQELALARDGHDqhvlELEAKMDQLRTMVEaadREKVELLNQLEEEKRKVEDLQ-FRVEEESITKGDL 454
Cdd:TIGR00606 406 EAKTAAQLCADLQSKERLKQEQAD----EIRDEKKGLGRTIE---LKKEILEKKQEELKFVIKELQqLEGSSDRILELDQ 478
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 455 EQKSPISEDP---ENVATVSEKSRIM-------ELEKDLALRAQEVAELRRRLESSKppgdvdMSLSLLQEISALQEKLE 524
Cdd:TIGR00606 479 ELRKAERELSkaeKNSLTETLKKEVKslqnekaDLDRKLRKLDQEMEQLNHHTTTRT------QMEMLTKDKMDKDEQIR 552
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 525 AIHTDHQGEMTSLKEHFGAReeafqkeiKALHTATEKLSKENESLRSKLDHANKENSDVialwkSKLETAIASHQQAMEE 604
Cdd:TIGR00606 553 KIKSRHSDELTSLLGYFPNK--------KQLEDWLHSKSKEINQTRDRLAKLNKELASL-----EQNKNHINNELESKEE 619
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 605 LKVSFSKGIgTDSAEFAELKTQIERLRLDYqheieslqsKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSA 684
Cdd:TIGR00606 620 QLSSYEDKL-FDVCGSQDEESDLERLKEEI---------EKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQT 689
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 685 EDQHLVEMEDTLNKLQEAEIKVKELE-VLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEG 763
Cdd:TIGR00606 690 EAELQEFISDLQSKLRLAPDKLKSTEsELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEE 769
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 764 AEKQIKNLETERNAesskansiTKELQEKELVLTGLQDSLNQVNQVKETLEKELQtlkekfastseeAVSAQTRMQDTVN 843
Cdd:TIGR00606 770 QETLLGTIMPEEES--------AKVCLTDVTIMERFQMELKDVERKIAQQAAKLQ------------GSDLDRTVQQVNQ 829
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 844 KLHQKEEQFNVLSSELEKLRenltdmeakfKEKDDREDQLVKAKEKLENDIAEIMKMsGDNSSQLTKMNDELRLKERSVE 923
Cdd:TIGR00606 830 EKQEKQHELDTVVSKIELNR----------KLIQDQQEQIQHLKSKTNELKSEKLQI-GTNLQRRQQFEEQLVELSTEVQ 898
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 924 ELQLKLTKANENASFLQKSIGevtlKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTK 1003
Cdd:TIGR00606 899 SLIREIKDAKEQDSPLETFLE----KDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQ 974
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1004 HEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTaedaMQIMEQMTKEKTETLAS---------LE 1074
Cdd:TIGR00606 975 KETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLT----LRKRENELKEVEEELKQhlkemgqmqVL 1050
|
730 740 750 760
....*....|....*....|....*....|....*....|...
gi 1907165148 1075 DTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEE 1117
Cdd:TIGR00606 1051 QMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1019-1191 |
6.76e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.00 E-value: 6.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1019 EDKLKAAQEANRDLMQD----MEELKtqadKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENN 1094
Cdd:PRK12704 30 EAKIKEAEEEAKRILEEakkeAEAIK----KEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1095 LKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKlAEELGRTRDEvtshqkLEEERSVLnnql 1174
Cdd:PRK12704 106 EKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAK-EILLEKVEEE------ARHEAAVL---- 174
|
170
....*....|....*..
gi 1907165148 1175 leMKKRESEFRKDADEE 1191
Cdd:PRK12704 175 --IKEIEEEAKEEADKK 189
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
637-902 |
8.09e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.85 E-value: 8.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 637 EIESLQSKQDsersaHAKEMETMQAKLMKIIKEKEDsleAVKARLDSAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKY 716
Cdd:PHA02562 182 QIQTLDMKID-----HIQQQIKTYNKNIEEQRKKNG---ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 717 TEQSEVIGNFTSQLSAvkeKLLDLDALRKANSEGKlELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEkelvL 796
Cdd:PHA02562 254 SAALNKLNTAAAKIKS---KIEQFQKVIKMYEKGG-VCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDE----L 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 797 TGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQdtvnklhQKEEQFNVLSSELEKLRENLTDmeaKFKEK 876
Cdd:PHA02562 326 EEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIE-------ELQAEFVDNAEELAKLQDELDK---IVKTK 395
|
250 260
....*....|....*....|....*..
gi 1907165148 877 DDredqlvKAKEKLENDIA-EIMKMSG 902
Cdd:PHA02562 396 SE------LVKEKYHRGIVtDLLKDSG 416
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
811-1311 |
8.83e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 8.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 811 ETLEkELQTLKEKFASTSEEAvsAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKL 890
Cdd:COG4913 252 ELLE-PIRELAERYAAARERL--AELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 891 ENDIAEImkmSGDNSSQLtkmndelrlkERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEE 970
Cdd:COG4913 329 EAQIRGN---GGDRLEQL----------EREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEA 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 971 KLLELEKKMETSYnqcqDLKAKYEKASSETKTKHEEIL----------QNLQKMLADTEDKLKAAQEANR---DLMQDME 1037
Cdd:COG4913 396 LEEELEALEEALA----EAEAALRDLRRELRELEAEIAslerrksnipARLLALRDALAEALGLDEAELPfvgELIEVRP 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1038 E-----------LKTQA-------DKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAR-LQNELDTlKENNLKT- 1097
Cdd:COG4913 472 EeerwrgaiervLGGFAltllvppEHYAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDsLAGKLDF-KPHPFRAw 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1098 -VEELNKSKELLSVENQkmEEFKKE--------------------------------------IETLKQAAAQKSQQLSA 1138
Cdd:COG4913 551 lEAELGRRFDYVCVDSP--EELRRHpraitragqvkgngtrhekddrrrirsryvlgfdnrakLAALEAELAELEEELAE 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1139 LQEENVKLAEELGRTRDEVTSHQKLEEersvLNNQLLEMKKRESEFRkDADEEKASLQKSisltSALLTEKDAELEKLRN 1218
Cdd:COG4913 629 AEERLEALEAELDALQERREALQRLAE----YSWDEIDVASAEREIA-ELEAELERLDAS----SDDLAALEEQLEELEA 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1219 EVTVLRGEnatakslhsvVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEE--DERAQE------SQQMID 1290
Cdd:COG4913 700 ELEELEEE----------LDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAllEERFAAalgdavERELRE 769
|
570 580
....*....|....*....|.
gi 1907165148 1291 FLNSVIVDLQRKNQDLKMKVE 1311
Cdd:COG4913 770 NLEERIDALRARLNRAEEELE 790
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
731-1055 |
8.88e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 43.35 E-value: 8.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 731 SAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVK 810
Cdd:COG4372 31 EQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 811 ETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREdqLVKAKEKL 890
Cdd:COG4372 111 EELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAE--AEQALDEL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 891 ENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEE 970
Cdd:COG4372 189 LKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAIL 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 971 KLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQ 1050
Cdd:COG4372 269 VEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLV 348
|
....*
gi 1907165148 1051 TAEDA 1055
Cdd:COG4372 349 GLLDN 353
|
|
| CCCAP |
pfam15964 |
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ... |
1001-1254 |
9.52e-04 |
|
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.
Pssm-ID: 435040 [Multi-domain] Cd Length: 703 Bit Score: 43.74 E-value: 9.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1001 KTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQiMEQMTKEKTETLASLEDTKQTN 1080
Cdd:pfam15964 362 KSELERQKERLEKELASQQEKRAQEKEALRKEMKKEREELGATMLALSQNVAQLEAQ-VEKVTREKNSLVSQLEEAQKQL 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1081 ARLQNELDT--------LKENNLKTVEELNKSKEL-------LSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVK 1145
Cdd:pfam15964 441 ASQEMDVTKvcgemryqLNQTKMKKDEAEKEHREYrtktgrqLEIKDQEIEKLGLELSESKQRLEQAQQDAARAREECLK 520
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1146 LAEELGRTRDEV--TSHQKLEEERSVLNN---QLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEV 1220
Cdd:pfam15964 521 LTELLGESEHQLhlTRLEKESIQQSFSNEakaQALQAQQREQELTQKMQQMEAQHDKTVNEQYSLLTSQNTFIAKLKEEC 600
|
250 260 270
....*....|....*....|....*....|....
gi 1907165148 1221 TVLrgenatAKSLHSVVQTLESDKVKLELKVKNL 1254
Cdd:pfam15964 601 CTL------AKKLEEITQKSRSEVEQLSQEKEYL 628
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
751-920 |
1.01e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 43.53 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 751 KLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKelvltgLQDSLNQvnqvketLEKELQTLKEKFastsEE 830
Cdd:COG0542 403 RMEIDSKPEELDELERRLEQLEIEKEALKKEQDEASFERLAE------LRDELAE-------LEEELEALKARW----EA 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 831 AVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDredqlvkakeklENDIAEIM---------KMS 901
Cdd:COG0542 466 EKELIEEIQELKEELEQRYGKIPELEKELAELEEELAELAPLLREEVT------------EEDIAEVVsrwtgipvgKLL 533
|
170
....*....|....*....
gi 1907165148 902 GDNSSQLTKMNDElrLKER 920
Cdd:COG0542 534 EGEREKLLNLEEE--LHER 550
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
511-819 |
1.02e-03 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 42.99 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 511 SLLQEISALQEKLEAIHTDHQGEMTSLKEHFgareeafQKEIKALHTATEKLSKENESLRSKLDHANKENSDVialwKSK 590
Cdd:pfam00038 22 FLEQQNKLLETKISELRQKKGAEPSRLYSLY-------EKEIEDLRRQLDTLTVERARLQLELDNLRLAAEDF----RQK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 591 LETAIAsHQQAMEelkvsfskgigtdsAEFAELKTQIERL---RLDYQHEIESLQSKQDSERSAHAKEMETMQAKLmkii 667
Cdd:pfam00038 91 YEDELN-LRTSAE--------------NDLVGLRKDLDEAtlaRVDLEAKIESLKEELAFLKKNHEEEVRELQAQV---- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 668 kekedSLEAVKARLDSAEDQHLVE-MEDTLNKLQE-AEIKVKELEVL-QAKYTEQSEVIGNFTSQLSAVKEKLLDldaLR 744
Cdd:pfam00038 152 -----SDTQVNVEMDAARKLDLTSaLAEIRAQYEEiAAKNREEAEEWyQSKLEELQQAAARNGDALRSAKEEITE---LR 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 745 KANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSItkeLQEKELVLTGLQDSLNQVNQ-------VKETLEKEL 817
Cdd:pfam00038 224 RTIQSLEIELQSLKKQKASLERQLAETEERYELQLADYQEL---ISELEAELQETRQEMARQLReyqellnVKLALDIEI 300
|
..
gi 1907165148 818 QT 819
Cdd:pfam00038 301 AT 302
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
549-892 |
1.12e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 43.30 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 549 QKEIKALHTATEKLSKENESLRSKLDHANKEnsdvIALWKSKLETAIASHQQAMEELKVSFSKGIG-TDSAEFAELKTQI 627
Cdd:pfam06160 106 LEELDELLESEEKNREEVEELKDKYRELRKT----LLANRFSYGPAIDELEKQLAEIEEEFSQFEElTESGDYLEAREVL 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 628 ERLRldyqHEIESLQSK-----------------QDSERSAHAKEMETMQ-----AKLMKIIKEKEDSLEAVKARLDSae 685
Cdd:pfam06160 182 EKLE----EETDALEELmedipplyeelktelpdQLEELKEGYREMEEEGyalehLNVDKEIQQLEEQLEENLALLEN-- 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 686 dqhlVEMEDTLNKLQEAEIKVKEL-EVLQAKYTEQSEVIGNFtsqlsavkEKLLD-LDALRKANSEGKLELETLRQ--QL 761
Cdd:pfam06160 256 ----LELDEAEEALEEIEERIDQLyDLLEKEVDAKKYVEKNL--------PEIEDyLEHAEEQNKELKEELERVQQsyTL 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 762 EGAEKQI-KNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQD 840
Cdd:pfam06160 324 NENELERvRGLEKQLEELEKRYDEIVERLEEKEVAYSELQEELEEILEQLEEIEEEQEEFKESLQSLRKDELEAREKLDE 403
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907165148 841 TVNKLH----------------QKEEQFNVLSSELEKLRENLT----DMEAKFKEKDDREDQLVKAKEKLEN 892
Cdd:pfam06160 404 FKLELReikrlveksnlpglpeSYLDYFFDVSDEIEDLADELNevplNMDEVNRLLDEAQDDVDTLYEKTEE 475
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
799-1044 |
1.36e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 799 LQDSLNQVNQVKETLEKELQTLKEKfASTSEEAVSA-QTRmqdtvNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKD 877
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKE-LEEAEAALEEfRQK-----NGLVDLSEEAKLLLQQLSELESQLAEARAELAEAE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 878 DREDQLVKAKEKLENDIAEIMkmsgdNSSQLTKMNDELRLKERSVEELQLKLTKANEnasflqksigevTLKAEQSQQQA 957
Cdd:COG3206 240 ARLAALRAQLGSGPDALPELL-----QSPVIQQLRAQLAELEAELAELSARYTPNHP------------DVIALRAQIAA 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 958 ARKheEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTkheeiLQNLQKMLADTEDKLKAAQEANRDLMQDME 1037
Cdd:COG3206 303 LRA--QLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAE-----LPELEAELRRLEREVEVARELYESLLQRLE 375
|
....*..
gi 1907165148 1038 ELKTQAD 1044
Cdd:COG3206 376 EARLAEA 382
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
588-805 |
1.62e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 588 KSKLETAIASHQQAMEELKvsfsKGIGTDSAEFAELKTQIERLrldyqheiESLQSKQDSERSAHAKEMETMQAKLMKII 667
Cdd:COG4942 29 LEQLQQEIAELEKELAALK----KEEKALLKQLAALERRIAAL--------ARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 668 KEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKAN 747
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165148 748 SEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQ 805
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
461-704 |
1.68e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 461 SEDPENVATVSEKsrIME--LEKDLALRAQEVAELRRRLESSKPpgdvdmslSLLQEISALQEKLEAIHTDHQGEMTSLK 538
Cdd:COG3206 144 SPDPELAAAVANA--LAEayLEQNLELRREEARKALEFLEEQLP--------ELRKELEEAEAALEEFRQKNGLVDLSEE 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 539 EHFGARE-EAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIA-LWKSKLETAIASHQQAMEELKVSFskgiGTD 616
Cdd:COG3206 214 AKLLLQQlSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQsPVIQQLRAQLAELEAELAELSARY----TPN 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 617 SAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKL------MKIIKEKEDSLEAVKARLDSAEDQHlv 690
Cdd:COG3206 290 HPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLaqlearLAELPELEAELRRLEREVEVARELY-- 367
|
250
....*....|....
gi 1907165148 691 emEDTLNKLQEAEI 704
Cdd:COG3206 368 --ESLLQRLEEARL 379
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
763-1147 |
1.74e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.04 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 763 GAEKQIKNLETERNAESSKANSITKELQEKE---LVLTGLQDSLNQVNQVKETLEKELQTLKEkfastsEEAVSAQTRMQ 839
Cdd:pfam02463 142 GKIEIIAMMKPERRLEIEEEAAGSRLKRKKKealKKLIEETENLAELIIDLEELKLQELKLKE------QAKKALEYYQL 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 840 DTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMsgdNSSQLTKMNDELRLKE 919
Cdd:pfam02463 216 KEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKE---EEKEKKLQEEELKLLA 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 920 RSVEELQLKLTKANENASFLQKSIGEVtlkaeqsqQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSE 999
Cdd:pfam02463 293 KEEEELKSELLKLERRKVDDEEKLKES--------EKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKL 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1000 TKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQT 1079
Cdd:pfam02463 365 QEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQG 444
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1080 NARLQ--NELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLA 1147
Cdd:pfam02463 445 KLTEEkeELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLA 514
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
789-1313 |
1.97e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.58 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 789 LQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTD 868
Cdd:PRK01156 164 LERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 869 MEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELqLKLTKANENASFLQKSI-GEVT 947
Cdd:PRK01156 244 LSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDY-FKYKNDIENKKQILSNIdAEIN 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 948 -----------LKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLA 1016
Cdd:PRK01156 323 kyhaiikklsvLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEI 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1017 DTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDA----MQIMEQMTK----------EKTETLasLEDTKQTNAR 1082
Cdd:PRK01156 403 DPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDElsrnMEMLNGQSVcpvcgttlgeEKSNHI--INHYNEKKSR 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1083 LQNELDTLKENNLKTVEELNKSKELLS-VENQKMEEFKKEIETLKQAAAQKSQ---QLSALQEENVKLAE--------EL 1150
Cdd:PRK01156 481 LEEKIREIEIEVKDIDEKIVDLKKRKEyLESEEINKSINEYNKIESARADLEDikiKINELKDKHDKYEEiknrykslKL 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1151 GRTRDEVTSHQKLEEERSVLNNQLLemKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATA 1230
Cdd:PRK01156 561 EDLDSKRTSWLNALAVISLIDIETN--RSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEI 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1231 KSLHSVVQTLESdkvklelKVKNLelqlkenKRQLSSSSGNTDAQAEEDERAQESQQMIDFLNSVIVDLQRKNQDLKMKV 1310
Cdd:PRK01156 639 QENKILIEKLRG-------KIDNY-------KKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTI 704
|
...
gi 1907165148 1311 EMM 1313
Cdd:PRK01156 705 EIL 707
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
350-916 |
1.99e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.65 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 350 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHV-LELEAKMDQLRTMVEAADREKVelLN 428
Cdd:TIGR00618 375 HTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAhAKKQQELQQRYAELCAAAITCT--AQ 452
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 429 QLEEEKRKVEDLQFRVEEESITKGDLEQkspISEDPENVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPPGDVDM 508
Cdd:TIGR00618 453 CEKLEKIHLQESAQSLKEREQQLQTKEQ---IHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRR 529
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 509 SLSLLQEISALQEKLEaiHTDHQGemTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWK 588
Cdd:TIGR00618 530 MQRGEQTYAQLETSEE--DVYHQL--TSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSE 605
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 589 SKLETAIASHQQameelkvsfskgigtdsaefaELKTQIErlrLDYQHEIESLQSKQDSErsahAKEMETMQAKLMKIIK 668
Cdd:TIGR00618 606 AEDMLACEQHAL---------------------LRKLQPE---QDLQDVRLHLQQCSQEL----ALKLTALHALQLTLTQ 657
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 669 EKEdsleavkarldsaEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANS 748
Cdd:TIGR00618 658 ERV-------------REHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIE 724
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 749 EGKLEL-ETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQT----LKEK 823
Cdd:TIGR00618 725 NASSSLgSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEdthlLKTL 804
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 824 FASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLendIAEIMKMSGD 903
Cdd:TIGR00618 805 EAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKI---IQLSDKLNGI 881
|
570
....*....|...
gi 1907165148 904 NSSQLTKMNDELR 916
Cdd:TIGR00618 882 NQIKIQFDGDALI 894
|
|
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
727-896 |
2.05e-03 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 42.74 E-value: 2.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 727 TSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQV 806
Cdd:pfam05911 656 IDNLSSDPEIPSDGPLVSGSNDLKTEENKRLKEEFEQLKSEKENLEVELASCTENLESTKSQLQESEQLIAELRSELASL 735
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 807 NQVKETLEKELQTLKEKFASTSEEAVSAQTRmqdtVNKLHQKeeqFNVLSSELEKLRENLTDMEAKFKEkddREDQL--V 884
Cdd:pfam05911 736 KESNSLAETQLKCMAESYEDLETRLTELEAE----LNELRQK---FEALEVELEEEKNCHEELEAKCLE---LQEQLerN 805
|
170
....*....|..
gi 1907165148 885 KAKEKLENDIAE 896
Cdd:pfam05911 806 EKKESSNCDADQ 817
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1008-1185 |
2.39e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 2.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1008 LQNLQKMLADTEDKLKAAQEANR---------DLMQDMEELKTQADKAKAA-QTAEDAMQIMEQMTKEKTETLASLEDT- 1076
Cdd:COG3206 184 LPELRKELEEAEAALEEFRQKNGlvdlseeakLLLQQLSELESQLAEARAElAEAEARLAALRAQLGSGPDALPELLQSp 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1077 ---------KQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLA 1147
Cdd:COG3206 264 viqqlraqlAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARL 343
|
170 180 190
....*....|....*....|....*....|....*...
gi 1907165148 1148 EELGRTRDEVtshQKLEEERSVLNNQLLEMKKRESEFR 1185
Cdd:COG3206 344 AELPELEAEL---RRLEREVEVARELYESLLQRLEEAR 378
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
562-802 |
2.50e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.31 E-value: 2.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 562 LSKENESLRSKLDHANkENSDVIALWKSKLETAIASHQQAMEELKVSfskgigtDSAEFAELKTQIERLR---LDYQHEI 638
Cdd:PHA02562 165 LSEMDKLNKDKIRELN-QQIQTLDMKIDHIQQQIKTYNKNIEEQRKK-------NGENIARKQNKYDELVeeaKTIKAEI 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 639 ESLQ------SKQDSERSAHAKEMETMQAKL-------MKIIKEKED---------SLEAVKARLDSAEDQhLVEMEDTL 696
Cdd:PHA02562 237 EELTdellnlVMDIEDPSAALNKLNTAAAKIkskieqfQKVIKMYEKggvcptctqQISEGPDRITKIKDK-LKELQHSL 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 697 NKLQEAeikVKELEVLQAKYTEQSEVIGNFTSQLSAVKEkllDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERN 776
Cdd:PHA02562 316 EKLDTA---IDELEEIMDEFNEQSKKLLELKNKISTNKQ---SLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELD 389
|
250 260
....*....|....*....|....*.
gi 1907165148 777 AESSKANSITKELQEKELVLTGLQDS 802
Cdd:PHA02562 390 KIVKTKSELVKEKYHRGIVTDLLKDS 415
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
753-960 |
2.71e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 2.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 753 ELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLN----QVNQVKETLEKELQTLKEKFASTS 828
Cdd:COG3883 24 ELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAeaeaEIEERREELGERARALYRSGGSVS 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 829 E-EAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQ 907
Cdd:COG3883 104 YlDVLLGSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEAL 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1907165148 908 LTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARK 960
Cdd:COG3883 184 LAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAA 236
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
654-899 |
4.14e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 41.05 E-value: 4.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 654 KEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQ--HLVEMEDTLNK-----LQEAEIKVKELEVLQAKYTEQSEVIGNF 726
Cdd:COG1340 4 DELSSSLEELEEKIEELREEIEELKEKRDELNEElkELAEKRDELNAqvkelREEAQELREKRDELNEKVKELKEERDEL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 727 TSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNleternaesskaNSITKElQEKELV--LTGLQDSLN 804
Cdd:COG1340 84 NEKLNELREELDELRKELAELNKAGGSIDKLRKEIERLEWRQQT------------EVLSPE-EEKELVekIKELEKELE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 805 QVNQVKEtLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLV 884
Cdd:COG1340 151 KAKKALE-KNEKLKELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEAQEKADELH 229
|
250
....*....|....*
gi 1907165148 885 KAKEKLENDIAEIMK 899
Cdd:COG1340 230 EEIIELQKELRELRK 244
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1040-1329 |
4.33e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.04 E-value: 4.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1040 KTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFK 1119
Cdd:COG4372 21 KTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQ 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1120 KEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVlnnqllEMKKRESEFRKDADEEKASLQKSI 1199
Cdd:COG4372 101 EELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREE------ELKELEEQLESLQEELAALEQELQ 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1200 SLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEED 1279
Cdd:COG4372 175 ALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEE 254
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1280 ERAQESQQMIDFLNSVIVDLQRKNQDLKMKVEMMSEAALNGNGEDLNSYD 1329
Cdd:COG4372 255 VILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNL 304
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
404-574 |
4.41e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 4.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 404 ELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKspISEDPENVATVSEKSRIMELEKDL 483
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELE--IEEVEARIKKYEEQLGNVRNNKEY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 484 ALRAQEVAELRRRLESSKppgdvDMSLSLLQEISALQEKLEAIhtdhQGEMTSLKEHFGAREEAFQKEIKALHTATEKLS 563
Cdd:COG1579 92 EALQKEIESLKRRISDLE-----DEILELMERIEELEEELAEL----EAELAELEAELEEKKAELDEELAELEAELEELE 162
|
170
....*....|.
gi 1907165148 564 KENESLRSKLD 574
Cdd:COG1579 163 AEREELAAKIP 173
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
799-1155 |
6.20e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.65 E-value: 6.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 799 LQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLhqkEEQFNVLSSELEKLRENLTDMEAKFKEKDD 878
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRREL---ESRVAELKEELRQSREKHEELEEKYKELSA 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 879 REDQLVKAKEKLendiaeiMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQqqaa 958
Cdd:pfam07888 109 SSEELSEEKDAL-------LAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQ---- 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 959 rkheeekkeleeklleleKKMETSYNQCQDLKAKYEKASSETKTKHEEILQnLQKMLADTEDKLKAAQEANRDLMQDMEE 1038
Cdd:pfam07888 178 ------------------AKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQ-LQDTITTLTQKLTTAHRKEAENEALLEE 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1039 LKTQADKAKAAQTAEDAMqimeqmtKEKTETLASLEDTKQTN---ARLQNELDTLK--ENNLKTVEELNKSKELLSVENQ 1113
Cdd:pfam07888 239 LRSLQERLNASERKVEGL-------GEELSSMAAQRDRTQAElhqARLQAAQLTLQlaDASLALREGRARWAQERETLQQ 311
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1907165148 1114 KMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRD 1155
Cdd:pfam07888 312 SAEADKDRIEKLSAELQRLEERLQEERMEREKLEVELGREKD 353
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
1030-1207 |
6.48e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 40.85 E-value: 6.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1030 RDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLS 1109
Cdd:PRK12705 29 QRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1110 VENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKlAEELGRTRDEvtshqkLEEERSVLNNQLLEMKKRESEfRKDAD 1189
Cdd:PRK12705 109 EREKALSARELELEELEKQLDNELYRVAGLTPEQAR-KLLLKLLDAE------LEEEKAQRVKKIEEEADLEAE-RKAQN 180
|
170
....*....|....*...
gi 1907165148 1190 EEKASLQKSISLTSALLT 1207
Cdd:PRK12705 181 ILAQAMQRIASETASDLS 198
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
984-1306 |
6.60e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.77 E-value: 6.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 984 NQCQDLKAKYEKASSETKTKhEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKaaqtaedamQIMEQMT 1063
Cdd:TIGR04523 33 TEEKQLEKKLKTIKNELKNK-EKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNK---------DKINKLN 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1064 KEKTETLASLEDTKQTNARLQNELDTLK-------ENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQL 1136
Cdd:TIGR04523 103 SDLSKINSEIKNDKEQKNKLEVELNKLEkqkkenkKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEK 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1137 SALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSA-------LLTEK 1209
Cdd:TIGR04523 183 LNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNtqtqlnqLKDEQ 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1210 DAELEKLRNEVTVLRGENATAKSLHSVVQTLESD-----KVKLELKVKNLELQLKENKRQLSsssgntdaqaEEDERAQE 1284
Cdd:TIGR04523 263 NKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEisdlnNQKEQDWNKELKSELKNQEKKLE----------EIQNQISQ 332
|
330 340
....*....|....*....|..
gi 1907165148 1285 SQQMIDFLNSVIVDLQRKNQDL 1306
Cdd:TIGR04523 333 NNKIISQLNEQISQLKKELTNS 354
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1065-1287 |
7.45e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 7.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1065 EKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQK----SQQLSALQ 1140
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERreelGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1141 E--------ENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAE 1212
Cdd:COG3883 97 RsggsvsylDVLLGSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQ 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907165148 1213 LEKLRNEVTVLRGENATAKSLhsvVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQQ 1287
Cdd:COG3883 177 QAEQEALLAQLSAEEAAAEAQ---LAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAG 248
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
998-1137 |
8.53e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 39.95 E-value: 8.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 998 SETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELK-----TQADKAKAAQTAEDAMQIMEQMTKEKTETLAS 1072
Cdd:PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRaslsaAEAERSRLQALLAELAGAGAAAEGRAGELAQE 124
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907165148 1073 LEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQ----AAAQKSQQLS 1137
Cdd:PRK09039 125 LDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRrlnvALAQRVQELN 193
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1008-1170 |
8.98e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 8.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1008 LQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQT-AEDAMQIMEQMTKEKTETLASLEDTKQTNArLQNE 1086
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKrLELEIEEVEARIKKYEEQLGNVRNNKEYEA-LQKE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1087 LDTLKennlKTVEELNksKELLSVENQKmEEFKKEIETLKQAAAQKSQQLSALQEEnvkLAEELGRTRDEVtshQKLEEE 1166
Cdd:COG1579 98 IESLK----RRISDLE--DEILELMERI-EELEEELAELEAELAELEAELEEKKAE---LDEELAELEAEL---EELEAE 164
|
....
gi 1907165148 1167 RSVL 1170
Cdd:COG1579 165 REEL 168
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
483-770 |
9.03e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 9.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 483 LALRAQEVAELRRRLEsskppgdvdmslSLLQEISALQEKLEAihtdhqgeMTSLKEHFGAREEAFQKEIKalhtaTEKL 562
Cdd:COG4913 612 LAALEAELAELEEELA------------EAEERLEALEAELDA--------LQERREALQRLAEYSWDEID-----VASA 666
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 563 SKENESLRSKLDHANKENSDVIALwKSKLETAIASHQQAMEELKVsFSKGIGTDSAEFAELKTQIERLrldyQHEIESLQ 642
Cdd:COG4913 667 EREIAELEAELERLDASSDDLAAL-EEQLEELEAELEELEEELDE-LKGEIGRLEKELEQAEEELDEL----QDRLEAAE 740
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 643 SKQDSERSAHAKEM--ETMQAKLMKIIKEK-EDSLEAVKARLDSAEDQhLVEMEDTLNK-----LQEAEIKVKELEVLQA 714
Cdd:COG4913 741 DLARLELRALLEERfaAALGDAVERELRENlEERIDALRARLNRAEEE-LERAMRAFNRewpaeTADLDADLESLPEYLA 819
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1907165148 715 KYTEQSEvignftSQLSAVKEKLLDLdaLRKANSEgklELETLRQQLEGAEKQIKN 770
Cdd:COG4913 820 LLDRLEE------DGLPEYEERFKEL--LNENSIE---FVADLLSKLRRAIREIKE 864
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1064-1220 |
9.31e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 9.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1064 KEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKeietlKQAAAQKSQQLSALQEEN 1143
Cdd:COG1579 24 HRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEE-----QLGNVRNNKEYEALQKEI 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907165148 1144 VKLAEELGRTRDEVtshQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEV 1220
Cdd:COG1579 99 ESLKRRISDLEDEI---LELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKI 172
|
|
| LXG |
pfam04740 |
LXG domain of WXG superfamily; This domain is present is the N-terminal region of a group of ... |
653-875 |
9.70e-03 |
|
LXG domain of WXG superfamily; This domain is present is the N-terminal region of a group of polymorphic toxin proteins in bacteria. It is predicted to use Type VII secretion pathway to mediate export of bacterial toxins.
Pssm-ID: 428100 [Multi-domain] Cd Length: 202 Bit Score: 39.15 E-value: 9.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 653 AKEMETMQAKLMKIIKEKEDSLEAVKARLdsaedQHLVEMEDTLNKlqEAEIKVKE-LEVLQAKYTEQ-SEVIGNFTSQL 730
Cdd:pfam04740 5 VSELIEGIDQTISELKELRDQLEKVKKAI-----EGLANLEDSLKG--KGGEAIKNfYSELHLPFLDFlQDFIDEYIEFL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 731 SAVKEKLLDLDAlrkaNSEGKLELETLRQQLEGAEKQIKNleternaesskansITKELQEKelvltgLQDSLNQVNQVK 810
Cdd:pfam04740 78 EQIKAALESFEP----SSNAFIDESFLEHELENGLKKAKE--------------KTEELTDE------INSILASVSDIV 133
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907165148 811 ETLEKELQTLKEKFAStseeavsAQTRMQDTVNKLHQKEEQfnvLSSELEKLRENLTDMEAKFKE 875
Cdd:pfam04740 134 SLPKLSDSEVQDSLQK-------AKKKVKDTIEKLYDFDQE---QTSELSELEADLQALKTYVSE 188
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
845-1198 |
9.75e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.34 E-value: 9.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 845 LHQKEEQFNVLSSELEKLR--ENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQ-----LTKMNDELRL 917
Cdd:TIGR00618 158 LKAKSKEKKELLMNLFPLDqyTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQvlekeLKHLREALQQ 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 918 KERSVEELQLKLTKANEnASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKAS 997
Cdd:TIGR00618 238 TQQSHAYLTQKREAQEE-QLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTEL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 998 SETKTKHEEILQNLQKMLADTEDkLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTK 1077
Cdd:TIGR00618 317 QSKMRSRAKLLMKRAAHVKQQSS-IEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKL 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1078 QTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSA----LQEENVKLAEELGRT 1153
Cdd:TIGR00618 396 QSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLekihLQESAQSLKEREQQL 475
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1907165148 1154 RDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKS 1198
Cdd:TIGR00618 476 QTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDI 520
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
1005-1169 |
9.80e-03 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 40.37 E-value: 9.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1005 EEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKA----KAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTN 1080
Cdd:pfam05262 188 EDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDAdkaqQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTS 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165148 1081 ARLQNEldTLKENNLKTVEELNK-----SKELLSVENQKMEEFKKEIETLKQAAAQKSQQlsaLQEENVKLAEELGRTRD 1155
Cdd:pfam05262 268 SPKEDK--QVAENQKREIEKAQIeikknDEEALKAKDHKAFDLKQESKASEKEAEDKELE---AQKKREPVAEDLQKTKP 342
|
170
....*....|....
gi 1907165148 1156 EVTSHQKLEEERSV 1169
Cdd:pfam05262 343 QVEAQPTSLNEDAI 356
|
|
| |
