|
Name |
Accession |
Description |
Interval |
E-value |
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
213-277 |
1.02e-34 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 126.75 E-value: 1.02e-34
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907165183 213 VGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKV 277
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
60-124 |
5.03e-31 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 116.35 E-value: 5.03e-31
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907165183 60 VGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKL 124
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
213-278 |
3.12e-28 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 108.44 E-value: 3.12e-28
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165183 213 VGDRVLVGGT-KAGVVRFLGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCQPKYGLFAPVHKVT 278
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
60-125 |
2.12e-27 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 106.13 E-value: 2.12e-27
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165183 60 VGERVWVNGN-KPGFIQFLGETQFAPGQWAGIVLDEP-IGKNDGSVAGVRYFQCEPLKGIFTRPSKLT 125
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPlRGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
473-1210 |
1.97e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.11 E-value: 1.97e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 473 HARTKELEQSLlfEKTKADkLQReLEDTRVatvseksrimELEKDL------ALRAQEVAELRRRLEsskppgDVDMSLS 546
Cdd:TIGR02168 171 KERRKETERKL--ERTREN-LDR-LEDILN----------ELERQLkslerqAEKAERYKELKAELR------ELELALL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 547 LLqEISALQEKLEAIhtdhQGEMTSLKEhfgaREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALwKSKL 626
Cdd:TIGR02168 231 VL-RLEELREELEEL----QEELKEAEE----ELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE-ISRL 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 627 ETAIASHQQAMEELKVSFSKGigtdSAEFAELKTQIERLRLDY---QHEIESLQSKQDSERSAHAKEMETMQAkLMKIIK 703
Cdd:TIGR02168 301 EQQKQILRERLANLERQLEEL----EAQLEELESKLDELAEELaelEEKLEELKEELESLEAELEELEAELEE-LESRLE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 704 EKEDSLEAVKARLDSAEDQ------HLVEMEDTLNKLQE------AEIKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQ 771
Cdd:TIGR02168 376 ELEEQLETLRSKVAQLELQiaslnnEIERLEARLERLEDrrerlqQEIEELLKKLEEAELKELQAELEELEEELEELQEE 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 772 FNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSgDNSSQLTKMNDEL-----RLKER-SVEE- 844
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFS-EGVKALLKNQSGLsgilgVLSELiSVDEg 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 845 ------------LQLKLTK----ANENASFL-QKSIGEVTLKAE--------QSQQQAARKHEEEKKELEEKLLELEKKM 899
Cdd:TIGR02168 535 yeaaieaalggrLQAVVVEnlnaAKKAIAFLkQNELGRVTFLPLdsikgteiQGNDREILKNIEGFLGVAKDLVKFDPKL 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 900 E-------------TSYNQCQDLKAKYE--------------------KASSETKTKheeiLQNLQKMLADTEDKLKAAQ 946
Cdd:TIGR02168 615 RkalsyllggvlvvDDLDNALELAKKLRpgyrivtldgdlvrpggvitGGSAKTNSS----ILERRREIEELEEKIEELE 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 947 EANRDLMQDMEELKTQADKAKaaQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKE 1026
Cdd:TIGR02168 691 EKIAELEKALAELRKELEELE--EELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEE 768
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1027 LLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVtsHQKLEEERSVLNNqlLEMKKRESEfrk 1106
Cdd:TIGR02168 769 RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA--ANLRERLESLERR--IAATERRLE--- 841
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1107 DADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLhsvVQTLESDKVKLELKVKNLELQLKENKRQLS 1186
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA---LALLRSELEELSEELRELESKRSELRRELE 918
|
810 820
....*....|....*....|....
gi 1907165183 1187 SSsgnTDAQAEEDERAQESQQMID 1210
Cdd:TIGR02168 919 EL---REKLAQLELRLEGLEVRID 939
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
427-1112 |
6.67e-16 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 83.65 E-value: 6.67e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 427 LNQLEEEKRKVEDLQFRVEEESITKGDLEQKSPISEDPENTQT-KLEHARTKELEQSLLFEKTKADKLQRELEDTRV--A 503
Cdd:PTZ00121 1066 VGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETgKAEEARKAEEAKKKAEDARKAEEARKAEDARKAeeA 1145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 504 TVSEKSRIMELEKDL--ALRAQEV--AELRRRLESSKPPGDVDMSLSLLQeisalQEKLEAIHTDHQGEMTSLKEHFGAR 579
Cdd:PTZ00121 1146 RKAEDAKRVEIARKAedARKAEEArkAEDAKKAEAARKAEEVRKAEELRK-----AEDARKAEAARKAEEERKAEEARKA 1220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 580 EEAfqKEIKALHTATEKLSKENESLRSKLDHANKE----NSDVIALWKSKLETAIASHQQAMEELKVSFSKGiGTDSAEF 655
Cdd:PTZ00121 1221 EDA--KKAEAVKKAEEAKKDAEEAKKAEEERNNEEirkfEEARMAHFARRQAAIKAEEARKADELKKAEEKK-KADEAKK 1297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 656 AELKTQIERLRLDYQheieslQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDqhlvEMEDTLNKLQ 735
Cdd:PTZ00121 1298 AEEKKKADEAKKKAE------EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAAD----EAEAAEEKAE 1367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 736 EAEIKKEKfASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRE---NLTDMEAKFKEKDDREDQLVKAKEKLEN 812
Cdd:PTZ00121 1368 AAEKKKEE-AKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAakkKADEAKKKAEEKKKADEAKKKAEEAKKA 1446
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 813 DIAEIMKMSGDNSSQLTKMNDElrlkERSVEELQLKLTKAnenasflqKSIGEVTLKAEQSQQQA--ARKHEEEKKELEE 890
Cdd:PTZ00121 1447 DEAKKKAEEAKKAEEAKKKAEE----AKKADEAKKKAEEA--------KKADEAKKKAEEAKKKAdeAKKAAEAKKKADE 1514
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 891 KLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQnlQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQ 970
Cdd:PTZ00121 1515 AKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK--AEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEA 1592
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 971 TAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNE---------LDTLKENNLKTVEELNKSKELLSV----ENQKMEE 1037
Cdd:PTZ00121 1593 RIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAeeekkkveqLKKKEAEEKKKAEELKKAEEENKIkaaeEAKKAEE 1672
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165183 1038 FKKEIETLKQAAAQKSQQLSAL--QEENVKLAEELGRTR-DEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEK 1112
Cdd:PTZ00121 1673 DKKKAEEAKKAEEDEKKAAEALkkEAEEAKKAEELKKKEaEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
356-932 |
1.79e-15 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 82.09 E-value: 1.79e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 356 LKEKQQHIEQLLAERDLE----RAEVAKATSHVGEIEQELAL----ARDGHD---QHVLELEAKMDQLRTMVEAADREKV 424
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEitglTEKASSARSQANSIQSQLEIiqeqARNQNSmymRQLSDLESTVSQLRSELREAKRMYE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 425 ELLNQLEEE---------KRKVEDLQFrvEEESITKGDLEQKSPISEDPENTQTKLEHARTKELEQSLLFEKTKADKLQR 495
Cdd:pfam15921 342 DKIEELEKQlvlanseltEARTERDQF--SQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRR 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 496 ELEDTRVatvsEKSRIMELEKDLALRAQ------------------EVAELRRRLESSKppgdvDMSLSLLQEISALQEK 557
Cdd:pfam15921 420 ELDDRNM----EVQRLEALLKAMKSECQgqmerqmaaiqgknesleKVSSLTAQLESTK-----EMLRKVVEELTAKKMT 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 558 LEAIHTDHQGEMTSLKEHFGAReEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIAL-----WKSKLETAIAS 632
Cdd:pfam15921 491 LESSERTVSDLTASLQEKERAI-EATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALklqmaEKDKVIEILRQ 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 633 HQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQhEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAV 712
Cdd:pfam15921 570 QIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQ-EFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAV 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 713 KaRLDSAEDQHLVEMEDTLNKL----QEAEIKKEKFASTSEEavsaqtrMQDTVNKLHQkeeQFNVLSSELEKLRENLTD 788
Cdd:pfam15921 649 K-DIKQERDQLLNEVKTSRNELnslsEDYEVLKRNFRNKSEE-------METTTNKLKM---QLKSAQSELEQTRNTLKS 717
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 789 MEAKfkekddredqlvkakeklendIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQ----KSIG 864
Cdd:pfam15921 718 MEGS---------------------DGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKeeknKLSQ 776
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907165183 865 EVTLKAEQSQQQAA-----RKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQ 932
Cdd:pfam15921 777 ELSTVATEKNKMAGelevlRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQ 849
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
352-1048 |
1.52e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.95 E-value: 1.52e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 352 LQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDqhvlELEAKMDQLRTMVEAADREKVELLNQLE 431
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELE----ELEAELEELESRLEELEEQLETLRSKVA 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 432 EEKRKVEDLQFRVEEESITKGDLE-QKSPISEDPENTQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRVATVSEKSR 510
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLEdRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 511 IMELEKDLALRAQEVAELRRRLES----------------------SKPPGDVDmslsLLQEISALQEKLE-AIHTDHQG 567
Cdd:TIGR02168 470 LEEAEQALDAAERELAQLQARLDSlerlqenlegfsegvkallknqSGLSGILG----VLSELISVDEGYEaAIEAALGG 545
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 568 EMTSL---KEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELkvsF 644
Cdd:TIGR02168 546 RLQAVvveNLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYL---L 622
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 645 SKGIGTDSaefaeLKTQIERLR-LDYQHEIESLQ----------SKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVK 713
Cdd:TIGR02168 623 GGVLVVDD-----LDNALELAKkLRPGYRIVTLDgdlvrpggviTGGSAKTNSSILERRREIEELEEKIEELEEKIAELE 697
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 714 ARLDSAEDQhLVEMEDTLNKLQEAEIKKE-KFASTSEEAVSAQTRMQdtvnklhQKEEQFNVLSSELEKLRENLTDMEAK 792
Cdd:TIGR02168 698 KALAELRKE-LEELEEELEQLRKELEELSrQISALRKDLARLEAEVE-------QLEERIAQLSKELTELEAEIEELEER 769
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 793 FKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQ 872
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 873 SQQQAARkheeeKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSEtktkHEEILQNLQKMLADTEDKLKAAQEANRDL 952
Cdd:TIGR02168 850 LSEDIES-----LAAEIEELEELIEELESELEALLNERASLEEALAL----LRSELEELSEELRELESKRSELRRELEEL 920
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 953 MQDMEELKTQADKAKA------AQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKE 1026
Cdd:TIGR02168 921 REKLAQLELRLEGLEVridnlqERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKE 1000
|
730 740
....*....|....*....|..
gi 1907165183 1027 LLSVENQKMEEFKKEIETLKQA 1048
Cdd:TIGR02168 1001 RYDFLTAQKEDLTEAKETLEEA 1022
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
356-1119 |
1.57e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.95 E-value: 1.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 356 LKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHdqhvLELEAKMDQLRTMVEAADREKVELLNQLEEEKR 435
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEV----SELEEEIEELQKELYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 436 KVEDLQFRVEEESITKGDLEQKSPISEDPENT-QTKLEHARTKELEQSLLFEKTKADKLQRE--LEDTRVATVSEKSRIM 512
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAElEEKLEELKEELESLEAELEELEAELEELEsrLEELEEQLETLRSKVA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 513 ELEKDLALRAQEVAELRRRLESSKppgdvDMSLSLLQEISALQEKL-EAIHTDHQGEMTSLKEHFGAREEAFQKEIKALH 591
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLE-----DRRERLQQEIEELLKKLeEAELKELQAELEELEEELEELQEELERLEEALE 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 592 TATEKLSKENESLRSKLDHANKENSDVIALwkskletaiashqQAMEELKVSFSKGIgtdsaefAELKTQIERLRLDYQH 671
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQARLDSL-------------ERLQENLEGFSEGV-------KALLKNQSGLSGILGV 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 672 EIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVK---------ARLDSAEDQHLV----EMEDTLNKLQEAE 738
Cdd:TIGR02168 525 LSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKqnelgrvtfLPLDSIKGTEIQgndrEILKNIEGFLGVA 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 739 IKKEKFASTSEEAVS---AQTRMQDTV----NKLHQKEEQFNVLSSELEKLR--------ENLTDMEAKFKEKDDREdqL 803
Cdd:TIGR02168 605 KDLVKFDPKLRKALSyllGGVLVVDDLdnalELAKKLRPGYRIVTLDGDLVRpggvitggSAKTNSSILERRREIEE--L 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 804 VKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEE 883
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 884 EKKELEEKLLELEKKMETSYNQcQDLKAKYEKASSETKTKhEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQA 963
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEI-EELEAQIEQLKEELKAL-REALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 964 DKAkaAQTAEDAMQIMEQMTKEktetlasLEDTKQTNARLQNELDTLKennlktvEELNKSKELLSVENQKMEEFKKEIE 1043
Cdd:TIGR02168 841 EDL--EEQIEELSEDIESLAAE-------IEELEELIEELESELEALL-------NERASLEEALALLRSELEELSEELR 904
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907165183 1044 TLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQ-KLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSI 1119
Cdd:TIGR02168 905 ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQeRLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
700-1243 |
1.82e-14 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 78.57 E-value: 1.82e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 700 KIIKEKEDSLEAVKARLDSAEDQhLVEMEDTLNKL----QEAEIKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVL 775
Cdd:PRK03918 193 ELIKEKEKELEEVLREINEISSE-LPELREELEKLekevKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEEL 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 776 SSELEKLRENLTDMEaKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLT---KMNDELRLKERSVEELQLKLTKA 852
Cdd:PRK03918 272 KKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINgieERIKELEEKEERLEELKKKLKEL 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 853 NENASFLQKSIGEV-TLKAEQSQQQAARKheeekkeleekllelekkmETSYNQCQDLKAKYEKASSEtKTKHEEILQNL 931
Cdd:PRK03918 351 EKRLEELEERHELYeEAKAKKEELERLKK-------------------RLTGLTPEKLEKELEELEKA-KEEIEEEISKI 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 932 QKMLADTEDKLKaaqeanrDLMQDMEELKTQADKA---KAAQTAEDAMQIMEQMT-------KEKTETLASLEDTKQTNA 1001
Cdd:PRK03918 411 TARIGELKKEIK-------ELKKAIEELKKAKGKCpvcGRELTEEHRKELLEEYTaelkrieKELKEIEEKERKLRKELR 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1002 RLQNELDTLKE--NNLKTVEELNKSKELLSVEN-QKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVT 1078
Cdd:PRK03918 484 ELEKVLKKESEliKLKELAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEK 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1079 SHQKLEEERSVLNNQLL--------EMKKRESEFR---------KDADEEKASLQKSISLTSALLTEKDAELEKLRNEVT 1141
Cdd:PRK03918 564 KLDELEEELAELLKELEelgfesveELEERLKELEpfyneylelKDAEKELEREEKELKKLEEELDKAFEELAETEKRLE 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1142 VLRGENATAKSLHSV--VQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQQMIDFLNSVIVDL 1219
Cdd:PRK03918 644 ELRKELEELEKKYSEeeYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERV 723
|
570 580
....*....|....*....|....
gi 1907165183 1220 QRKNQDLKMKVEMMSEAALNGNGE 1243
Cdd:PRK03918 724 EELREKVKKYKALLKERALSKVGE 747
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
211-271 |
1.05e-13 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 75.88 E-value: 1.05e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907165183 211 LKVGDRVLVGGTKaGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 271
Cdd:COG5244 4 LSVNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIF 63
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
333-1111 |
1.78e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 75.95 E-value: 1.78e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 333 GLLTETSSRYARKISGTTALQEALK--EKQQHIEQLLAERDLERAEVAKAtshvGEIEQELALARDGHDQHVLELEAKMD 410
Cdd:PTZ00121 1098 GKAEEAKKTETGKAEEARKAEEAKKkaEDARKAEEARKAEDARKAEEARK----AEDAKRVEIARKAEDARKAEEARKAE 1173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 411 QLRTMVEAADREKVELLNQLE--EEKRKVEDLQFRVEE---ESITKGDLEQKSPISEDPENTQTKLEHARTKELEQSLLF 485
Cdd:PTZ00121 1174 DAKKAEAARKAEEVRKAEELRkaEDARKAEAARKAEEErkaEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEE 1253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 486 EKTKADKLQRELEDTRVATVSEKSRIMEL-----EKDLALRAQEVAELRRRLESSKPPGDVDMSLSLLQEISALQEKLEA 560
Cdd:PTZ00121 1254 IRKFEEARMAHFARRQAAIKAEEARKADElkkaeEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADA 1333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 561 IHTDHQgEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKlETAIASHQQAMEEL 640
Cdd:PTZ00121 1334 AKKKAE-EAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAK-KKAEEDKKKADELK 1411
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 641 KVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAE 720
Cdd:PTZ00121 1412 KAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKK 1491
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 721 DQHLVEMEDTLNKLQEA-----EIKKEKFASTSEEAVSAQ-TRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFK 794
Cdd:PTZ00121 1492 AEEAKKKADEAKKAAEAkkkadEAKKAEEAKKADEAKKAEeAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKK 1571
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 795 EKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKE----------------RSVEELQLKLTKANENASF 858
Cdd:PTZ00121 1572 AEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEeakikaeelkkaeeekKKVEQLKKKEAEEKKKAEE 1651
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 859 LQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLelekkmETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADT 938
Cdd:PTZ00121 1652 LKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED------EKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAE 1725
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 939 EDKLKAAQEANRDLMQD---MEELKT-QADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLK-EN 1013
Cdd:PTZ00121 1726 EENKIKAEEAKKEAEEDkkkAEEAKKdEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDiFD 1805
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1014 NLKTVEELNKSKELlsVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQ 1093
Cdd:PTZ00121 1806 NFANIIEGGKEGNL--VINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEE 1883
|
810
....*....|....*...
gi 1907165183 1094 LLEMKKRESEFRKDADEE 1111
Cdd:PTZ00121 1884 IEEADEIEKIDKDDIERE 1901
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
401-1146 |
2.01e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.48 E-value: 2.01e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 401 HVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKSpisedpENTQTKLEhartkELE 480
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL------YALANEIS-----RLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 481 QSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKppGDVDMSLSLLQEISALQEKLEA 560
Cdd:TIGR02168 302 QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE--AELEELEAELEELESRLEELEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 561 IHTDHQGEMTSLKEHFG---AREEAFQKEIKALHTATEKLSKENESLRSKLDHANKEnsdvialwksKLETAIASHQQAM 637
Cdd:TIGR02168 380 QLETLRSKVAQLELQIAslnNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELK----------ELQAELEELEEEL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 638 EELKVSFSKGIgTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERS----------------AHAKEMETMQAKLMKI 701
Cdd:TIGR02168 450 EELQEELERLE-EALEELREELEEAEQALDAAERELAQLQARLDSLERlqenlegfsegvkallKNQSGLSGILGVLSEL 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 702 IKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAeIKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELE- 780
Cdd:TIGR02168 529 ISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAF-LKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDl 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 781 -----KLRENLTDMEAKFKEKDDREDQLVKAKEK--------LENDIAE----IMKMSGDNSSQLTKMNDELRLKERSVE 843
Cdd:TIGR02168 608 vkfdpKLRKALSYLLGGVLVVDDLDNALELAKKLrpgyrivtLDGDLVRpggvITGGSAKTNSSILERRREIEELEEKIE 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 844 ELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKheeekkelEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTK 923
Cdd:TIGR02168 688 ELEEKIAELEKALAELRKELEELEEELEQLRKELEEL--------SRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 924 HEEILQNLQKmLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTA-EDAMQIMEQMTKEKTETLASLEDTKQTNAR 1002
Cdd:TIGR02168 760 EAEIEELEER-LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDElRAELTLLNEEAANLRERLESLERRIAATER 838
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1003 LQNELDTLKENNLKTVEELNKSKELLSVEnqkMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVtshQK 1082
Cdd:TIGR02168 839 RLEDLEEQIEELSEDIESLAAEIEELEEL---IEELESELEALLNERASLEEALALLRSELEELSEELRELESKR---SE 912
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165183 1083 LEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLT----SALLTEKDAELEKLRNEVTVLRGE 1146
Cdd:TIGR02168 913 LRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTleeaEALENKIEDDEEEARRRLKRLENK 980
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
709-1238 |
2.15e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.89 E-value: 2.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 709 LEAVKARLDSAEDqHLVEMEDTLNKLQE--------AEIKKE-----------KFASTSEEAVSAQTRMQDTVNKLHQKE 769
Cdd:COG1196 181 LEATEENLERLED-ILGELERQLEPLERqaekaeryRELKEElkeleaellllKLRELEAELEELEAELEELEAELEELE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 770 EQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKL 849
Cdd:COG1196 260 AELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 850 TKANEnasflqksigevTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKheeiLQ 929
Cdd:COG1196 340 EELEE------------ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ----LE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 930 NLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQimEQMTKEKTETLASLEDTKQTNARLQNELDT 1009
Cdd:COG1196 404 ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE--AELEEEEEALLELLAELLEEAALLEAALAE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1010 LKEnnlKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSV 1089
Cdd:COG1196 482 LLE---ELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEV 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1090 LNNQLLEMKK----RESEFRKDADEEKASLQKSISLTSALL------TEKDAELEKLRNEVTVLRGENATAKSLHSVVQT 1159
Cdd:COG1196 559 AAAAIEYLKAakagRATFLPLDKIRARAALAAALARGAIGAavdlvaSDLREADARYYVLGDTLLGRTLVAARLEAALRR 638
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907165183 1160 LESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQQMIDFLNSVIVDLQRKNQDLKMKVEMMSEAAL 1238
Cdd:COG1196 639 AVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERL 717
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
835-1180 |
2.95e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 2.95e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 835 LRLKERSvEELQLKLTKANENASFLQKSIGEV-----TL-----KAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYN 904
Cdd:TIGR02168 168 SKYKERR-KETERKLERTRENLDRLEDILNELerqlkSLerqaeKAERYKELKAELRELELALLVLRLEELREELEELQE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 905 QCQDLKAKYEKASSETKTKHEEILQNLQKMLADtEDKLKAAQEANRDLMQDMEELKTQadKAKAAQTAEDAMQIMEQMTK 984
Cdd:TIGR02168 247 ELKEAEEELEELTAELQELEEKLEELRLEVSEL-EEEIEELQKELYALANEISRLEQQ--KQILRERLANLERQLEELEA 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 985 EKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENV 1064
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1065 KLAEELGRTRDEVtshQKLEEERSVLNNQLLEMKKRESEFRKDA-DEEKASLQKSISLTSALLTEKDAELEKLRNEVTVL 1143
Cdd:TIGR02168 404 RLEARLERLEDRR---ERLQQEIEELLKKLEEAELKELQAELEElEEELEELQEELERLEEALEELREELEEAEQALDAA 480
|
330 340 350
....*....|....*....|....*....|....*..
gi 1907165183 1144 RGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKE 1180
Cdd:TIGR02168 481 ERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSG 517
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
60-121 |
3.76e-12 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 70.87 E-value: 3.76e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907165183 60 VGERVWVNGNKpGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRP 121
Cdd:COG5244 6 VNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRP 66
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
514-1243 |
7.50e-12 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 70.15 E-value: 7.50e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 514 LEKDLALRAQEVAELRRRLESSKPPGDvDMSLSLLQEISALQEKLEAIHTDHQGeMTSLKEhfgaREEAFQKEIKalhTA 593
Cdd:pfam15921 76 IERVLEEYSHQVKDLQRRLNESNELHE-KQKFYLRQSVIDLQTKLQEMQMERDA-MADIRR----RESQSQEDLR---NQ 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 594 TEKLSKENESLRS-KLDHANKENSDVIALWKSKLetaiaSHQQAMEELK---VSFSKGIGTDSAEFAELKTQIERlrldy 669
Cdd:pfam15921 147 LQNTVHELEAAKClKEDMLEDSNTQIEQLRKMML-----SHEGVLQEIRsilVDFEEASGKKIYEHDSMSTMHFR----- 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 670 qheieslqsKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKL---QEAEIK--KEKF 744
Cdd:pfam15921 217 ---------SLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLiseHEVEITglTEKA 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 745 ASTSEEAVSAQTRMQ----DTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEK-DDREDQLVKAKEKLENDIAE--- 816
Cdd:pfam15921 288 SSARSQANSIQSQLEiiqeQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKiEELEKQLVLANSELTEARTErdq 367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 817 IMKMSGDNSSQLTKMNDEL--RLKERSVEELQLKLTKANENASFLqkSIGEVTLKAEQSQQQAARkheeekkeleeklle 894
Cdd:pfam15921 368 FSQESGNLDDQLQKLLADLhkREKELSLEKEQNKRLWDRDTGNSI--TIDHLRRELDDRNMEVQR--------------- 430
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 895 LEKKMETSYNQCQDlKAKYEKASSETKTKHEEILQNLQKMLADTEDKL-KAAQEANRDLMQDMEELKTQADKAKAAQTAE 973
Cdd:pfam15921 431 LEALLKAMKSECQG-QMERQMAAIQGKNESLEKVSSLTAQLESTKEMLrKVVEELTAKKMTLESSERTVSDLTASLQEKE 509
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 974 DAMqimEQMTKEKTETLASLEDTKQTNARLQNELDTLKenNLKTveELNKSKELLSVENQKMEEFKKEIETLKQAAAQKS 1053
Cdd:pfam15921 510 RAI---EATNAEITKLRSRVDLKLQELQHLKNEGDHLR--NVQT--ECEALKLQMAEKDKVIEILRQQIENMTQLVGQHG 582
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1054 QQLSALQEENVKLAEELGRTRDEVTSHQKLEEERsvlnnqllEMKKRESEFR-KDADEEKASLQKSISLTSALLTEKDAE 1132
Cdd:pfam15921 583 RTAGAMQVEKAQLEKEINDRRLELQEFKILKDKK--------DAKIRELEARvSDLELEKVKLVNAGSERLRAVKDIKQE 654
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1133 LEKLRNEVTVLRGE-NATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQQMidf 1211
Cdd:pfam15921 655 RDQLLNEVKTSRNElNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMG--- 731
|
730 740 750
....*....|....*....|....*....|..
gi 1907165183 1212 LNSVIVDLQRKNQDLKMKVEMMSEAALNGNGE 1243
Cdd:pfam15921 732 MQKQITAKRGQIDALQSKIQFLEEAMTNANKE 763
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
578-1226 |
8.06e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.10 E-value: 8.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 578 AREEAFQKEIKALHTATEKLSKENESLRSKLDHANKEnsdvIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAE 657
Cdd:TIGR02169 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKR----LEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIAS 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 658 LKTQIErLRLDYQHEIESLQSKQDSERSAHAKEMEtmqaKLMKIIKEKEDSLEAVKARLDSAEDqhlvEMEDTLNKLQEA 737
Cdd:TIGR02169 306 LERSIA-EKERELEDAEERLAKLEAEIDKLLAEIE----ELEREIEEERKRRDKLTEEYAELKE----ELEDLRAELEEV 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 738 EikkEKFASTSEEAVSAQTRMQDTVNKLH-------QKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKL 810
Cdd:TIGR02169 377 D---KEFAETRDELKDYREKLEKLKREINelkreldRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 811 ENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENAS--------------FLQKSIGEVTLKAEQSQQQ 876
Cdd:TIGR02169 454 EWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARaseervrggraveeVLKASIQGVHGTVAQLGSV 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 877 AARKHEEEKKELEEKLLELEKKMETSYNQCQDLkAKYEKASSET-----KTKHEEILQNLQKM---------LADTEDKL 942
Cdd:TIGR02169 534 GERYATAIEVAAGNRLNNVVVEDDAVAKEAIEL-LKRRKAGRATflplnKMRDERRDLSILSEdgvigfavdLVEFDPKY 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 943 KAA-------------QEANRDLM-------------------------QDMEELKTQADKAKAAQTAED---------- 974
Cdd:TIGR02169 613 EPAfkyvfgdtlvvedIEAARRLMgkyrmvtlegelfeksgamtggsraPRGGILFSRSEPAELQRLRERleglkrelss 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 975 AMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQ 1054
Cdd:TIGR02169 693 LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEE 772
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1055 QLSALQEENVKLAEELGRTR-DEVTSH-QKLEEERSVLNNQLLEMKKRES-----------------EFRKDADEEKASL 1115
Cdd:TIGR02169 773 DLHKLEEALNDLEARLSHSRiPEIQAElSKLEEEVSRIEARLREIEQKLNrltlekeylekeiqelqEQRIDLKEQIKSI 852
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1116 QKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKS----LHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGN 1191
Cdd:TIGR02169 853 EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKerdeLEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEE 932
|
730 740 750
....*....|....*....|....*....|....*
gi 1907165183 1192 TDAQAEEDERAQESQQMIDFLNSVIVDLQRKNQDL 1226
Cdd:TIGR02169 933 LSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEI 967
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
351-841 |
1.03e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 69.68 E-value: 1.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 351 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELalardghdQHVLELEAKMDQLRTMVEAADREKVELLNQL 430
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERR--------EELETLEAEIEDLRETIAETEREREELAEEV 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 431 EEEKRKVEDLQfrvEEESITKGDLEQKSPISEDPEntqtklehARTKELEqsllfekTKADKLQRELEDTRV---ATVSE 507
Cdd:PRK02224 282 RDLRERLEELE---EERDDLLAEAGLDDADAEAVE--------ARREELE-------DRDEELRDRLEECRVaaqAHNEE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 508 KSRIMELEKDLALRAQEVAELRRRLESskppgDVDMSLSLLQEISALQEKLEAihtdhqgEMTSLKEHFGAREEAFqkei 587
Cdd:PRK02224 344 AESLREDADDLEERAEELREEAAELES-----ELEEAREAVEDRREEIEELEE-------EIEELRERFGDAPVDL---- 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 588 kalhtatEKLSKENESLRSKLDHANKENSDVIALWKSkLETAIASHQQAMEELKVSfskgigtdsaefaelktqierlrl 667
Cdd:PRK02224 408 -------GNAEDFLEELREERDELREREAELEATLRT-ARERVEEAEALLEAGKCP------------------------ 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 668 dyqheiESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDqhLVEMEDTLNKLQEA--------EI 739
Cdd:PRK02224 456 ------ECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAED--LVEAEDRIERLEERredleeliAE 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 740 KKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEnDIAEIMK 819
Cdd:PRK02224 528 RRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLA-AIADAED 606
|
490 500
....*....|....*....|....*..
gi 1907165183 820 MSG---DNSSQLTKMNDELR--LKERS 841
Cdd:PRK02224 607 EIErlrEKREALAELNDERRerLAEKR 633
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
351-846 |
1.04e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.58 E-value: 1.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 351 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDG---HDQHVLELEAKMDQLRTMVEAADREKVELL 427
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEeyeLLAELARLEQDIARLEERRRELEERLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 428 NQLEEEKRKVEDLQFRVEEEsitKGDLEQKSPISEDPENTQTKLEHARtKELEQSLLFEKTKADKLQRELEDTRVATVSE 507
Cdd:COG1196 323 EELAELEEELEELEEELEEL---EEELEEAEEELEEAEAELAEAEEAL-LEAEAELAEAEEELEELAEELLEALRAAAEL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 508 KSRIMELEKDLALRAQEVAELRRRLEsskppgdvdmslSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEI 587
Cdd:COG1196 399 AAQLEELEEAEEALLERLERLEEELE------------ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLA 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 588 KALHTATEKLSKENESLRSKLDHANKENSDVIALWK--SKLETAIASHQQA-MEELKVSFSKGIGTDSAEFAELKTQIER 664
Cdd:COG1196 467 ELLEEAALLEAALAELLEELAEAAARLLLLLEAEADyeGFLEGVKAALLLAgLRGLAGAVAVLIGVEAAYEAALEAALAA 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 665 LRLDYQHE--------IESLQSKQ---------DSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEM 727
Cdd:COG1196 547 ALQNIVVEddevaaaaIEYLKAAKagratflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRT 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 728 EDTLNKLQEAEIKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQfnvLSSELEKLRENLTDMEAKFKEKDDREDQLVKAK 807
Cdd:COG1196 627 LVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRREL---LAALLEAEAELEELAERLAEEELELEEALLAEE 703
|
490 500 510
....*....|....*....|....*....|....*....
gi 1907165183 808 EKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQ 846
Cdd:COG1196 704 EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELL 742
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
404-1267 |
1.42e-11 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 69.70 E-value: 1.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 404 ELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQ----------FRVEEESITKGDLeqKSPISEDPENTQTKLEH 473
Cdd:TIGR01612 541 EIEAGLKESYELAKNWKKLIHEIKKELEEENEDSIHLEkeikdlfdkyLEIDDEIIYINKL--KLELKEKIKNISDKNEY 618
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 474 ARtkeleqsllfektKADKLQRELEDTRvATVSEKSRIMELEKDLALRAQEVAELRRRLESSKP-PGDVDmslSLLQEIS 552
Cdd:TIGR01612 619 IK-------------KAIDLKKIIENNN-AYIDELAKISPYQVPEHLKNKDKIYSTIKSELSKIyEDDID---ALYNELS 681
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 553 ALQEKLEAIHTDHQGEMTSLKehfgAREEAFQKEIKALHTATEKLSKEN-ESLRSKLdhankenSDVIALWKSKLETAIA 631
Cdd:TIGR01612 682 SIVKENAIDNTEDKAKLDDLK----SKIDKEYDKIQNMETATVELHLSNiENKKNEL-------LDIIVEIKKHIHGEIN 750
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 632 SH-QQAMEELKV---SFSKGIGTDSAEFAEL---KTQIERLRLDYQHeieslQSKQDSERSAHAKEMETMQAKLMKIIKE 704
Cdd:TIGR01612 751 KDlNKILEDFKNkekELSNKINDYAKEKDELnkyKSKISEIKNHYND-----QINIDNIKDEDAKQNYDKSKEYIKTISI 825
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 705 KEDsleavkarldsaedqhlvEMEDTLNklqEAEIKKEKFASTSEEAVSAQTRMQDTVNKLHqkeEQFNVLSSEL--EKL 782
Cdd:TIGR01612 826 KED------------------EIFKIIN---EMKFMKDDFLNKVDKFINFENNCKEKIDSEH---EQFAELTNKIkaEIS 881
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 783 RENLTDMEAKFKEkddredqlvkaKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKS 862
Cdd:TIGR01612 882 DDKLNDYEKKFND-----------SKSLINEINKSIEEEYQNINTLKKVDEYIKICENTKESIEKFHNKQNILKEILNKN 950
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 863 IGevTLKAEQSqqqaarkheeekkeleekllelekkMETSYnqcqdlKAKYEKASSETKTKHEEILQNLQkmLADTEDKl 942
Cdd:TIGR01612 951 ID--TIKESNL-------------------------IEKSY------KDKFDNTLIDKINELDKAFKDAS--LNDYEAK- 994
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 943 kaaqeaNRDLMQDMEELKTQADKAKAA------QTAEDAMQIMEQMTKEKTETLASLEDTKQTNarLQNELDTLKENNLK 1016
Cdd:TIGR01612 995 ------NNELIKYFNDLKANLGKNKENmlyhqfDEKEKATNDIEQKIEDANKNIPNIEIAIHTS--IYNIIDEIEKEIGK 1066
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1017 TVEELNksKELLSVENQKMEEFKKEIETLKQAAAQksqqlSALQEENVKLAEELGRTRDEV-TSHQKLEEERsvlnNQLL 1095
Cdd:TIGR01612 1067 NIELLN--KEILEEAEINITNFNEIKEKLKHYNFD-----DFGKEENIKYADEINKIKDDIkNLDQKIDHHI----KALE 1135
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1096 EMKKRESEFrkdADEEKASLQKSISLTSALLTEKDAE--LEKLRNEVTVLRGEN---ATAKSLHSVVQTLESDKVKLElK 1170
Cdd:TIGR01612 1136 EIKKKSENY---IDEIKAQINDLEDVADKAISNDDPEeiEKKIENIVTKIDKKKniyDEIKKLLNEIAEIEKDKTSLE-E 1211
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1171 VKNLELQLKENKrqlssssgNTDAQAEEDERAQESQQMIDFLNSVIVDLQR-KNQDLKMKVEMMSEAALNGNGEDLNSYD 1249
Cdd:TIGR01612 1212 VKGINLSYGKNL--------GKLFLEKIDEEKKKSEHMIKAMEAYIEDLDEiKEKSPEIENEMGIEMDIKAEMETFNISH 1283
|
890 900
....*....|....*....|
gi 1907165183 1250 SDDQEKQ--SKKKPRLFCDI 1267
Cdd:TIGR01612 1284 DDDKDHHiiSKKHDENISDI 1303
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
405-1181 |
4.47e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.77 E-value: 4.47e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 405 LEAKMDQLRTMVEAA------DREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKSPISEDPENTQTKLEHARTKE 478
Cdd:TIGR02168 150 IEAKPEERRAIFEEAagiskyKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELAL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 479 LEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKppgdvdmslSLLQEISALQEKL 558
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ---------KELYALANEISRL 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 559 EAihtdhqgemtslkehfgaREEAFQKEIKALHTATEKLSKENESLRSKLDHANKEnsdvIALWKSKLETAIASHQQAME 638
Cdd:TIGR02168 301 EQ------------------QKQILRERLANLERQLEELEAQLEELESKLDELAEE----LAELEEKLEELKEELESLEA 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 639 ELKVSFSKGIGTDSAEfAELKTQIERLRLDY---QHEIESLQSKQdSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKAR 715
Cdd:TIGR02168 359 ELEELEAELEELESRL-EELEEQLETLRSKVaqlELQIASLNNEI-ERLEARLERLEDRRERLQQEIEELLKKLEEAELK 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 716 LDSAEdqhLVEMEDTLNKLQEA-EIKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFK 794
Cdd:TIGR02168 437 ELQAE---LEELEEELEELQEElERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLK 513
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 795 EKDDRED------QLVKAKEK----LENDIAEIMK---MSGDNS--------------------------SQLTKMNDEL 835
Cdd:TIGR02168 514 NQSGLSGilgvlsELISVDEGyeaaIEAALGGRLQavvVENLNAakkaiaflkqnelgrvtflpldsikgTEIQGNDREI 593
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 836 RLKERSVEELQLKLTKAN--------------------ENASFLQKSIGE----VTLKAE-------------------Q 872
Cdd:TIGR02168 594 LKNIEGFLGVAKDLVKFDpklrkalsyllggvlvvddlDNALELAKKLRPgyriVTLDGDlvrpggvitggsaktnssiL 673
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 873 SQQQAARKHEEEKKELEEKLLelekkmetsynqcqdlkakyekassETKTKHEEILQNLQKMLADTEDKLKAAQEANRDL 952
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIA-------------------------ELEKALAELRKELEELEEELEQLRKELEELSRQI 728
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 953 MQdmeelkTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVEN 1032
Cdd:TIGR02168 729 SA------LRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1033 QKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEvtsHQKLEEERSVLNNQLLEMKKRESEFRKDAD--- 1109
Cdd:TIGR02168 803 EALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQ---IEELSEDIESLAAEIEELEELIEELESELEall 879
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907165183 1110 EEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGE-NATAKSLHSVVQTLEsdkvKLELKVKNLELQLKEN 1181
Cdd:TIGR02168 880 NERASLEEALALLRSELEELSEELRELESKRSELRRElEELREKLAQLELRLE----GLEVRIDNLQERLSEE 948
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
340-986 |
5.77e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.40 E-value: 5.77e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 340 SRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELaLARDGHDQHVLELEAKMDQLRTMVEAA 419
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV-KELEELKEEIEELEKELESLEGSKRKL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 420 DREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKSPISEDPENTQTKLehartKELEQSLLFEKTKADKLQRELED 499
Cdd:PRK03918 258 EEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDEL-----REIEKRLSRLEEEINGIEERIKE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 500 TRvatvSEKSRIMELEKdlalraqEVAELRRRLESSKPpgdvdmSLSLLQEISALQEKLEaihtdhqgemtSLKEHFGAR 579
Cdd:PRK03918 333 LE----EKEERLEELKK-------KLKELEKRLEELEE------RHELYEEAKAKKEELE-----------RLKKRLTGL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 580 E-EAFQKEIKALHTATEKLSKENESLRSKldhankensdvialwKSKLETAIASHQQAMEELKVsfskgigtdsaefAEL 658
Cdd:PRK03918 385 TpEKLEKELEELEKAKEEIEEEISKITAR---------------IGELKKEIKELKKAIEELKK-------------AKG 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 659 KTQIERLRLDYQHEIESLqskqdSERSAHAKEMEtmqaKLMKIIKEKEDSLEAVKARLDS--AEDQHLVEMEDTLNKLQE 736
Cdd:PRK03918 437 KCPVCGRELTEEHRKELL-----EEYTAELKRIE----KELKEIEEKERKLRKELRELEKvlKKESELIKLKELAEQLKE 507
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 737 AEIKKEKFasTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEN---- 812
Cdd:PRK03918 508 LEEKLKKY--NLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEElgfe 585
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 813 DIAEIMKMSGDNSS------QLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQ----QQAARKHE 882
Cdd:PRK03918 586 SVEELEERLKELEPfyneylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEkkysEEEYEELR 665
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 883 EEKKELEEKLLELEKKMETSYNQCQDLKAKYE--KASSETKTKHEEILQNLQKMLADTEDklkaaqeanrdLMQDMEELK 960
Cdd:PRK03918 666 EEYLELSRELAGLRAELEELEKRREEIKKTLEklKEELEEREKAKKELEKLEKALERVEE-----------LREKVKKYK 734
|
650 660
....*....|....*....|....*.
gi 1907165183 961 TQADKAKAAQTAEDAMQIMEQMTKEK 986
Cdd:PRK03918 735 ALLKERALSKVGEIASEIFEELTEGK 760
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
625-1139 |
1.40e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.11 E-value: 1.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 625 KLETAIASHQQAMEELKvsfskgigtdsAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAK--EMETMQAKLMKII 702
Cdd:COG1196 243 ELEAELEELEAELEELE-----------AELAELEAELEELRLELEELELELEEAQAEEYELLAElaRLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 703 KEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKL 782
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 783 RENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEImkmsGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKS 862
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEEL----EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 863 IGEVTLKAEQSQQQAARKHEEEKKELEEKllelekkmetsynqcQDLKAKYEKASSETKTKHEEILQNLQ----KMLADT 938
Cdd:COG1196 468 LLEEAALLEAALAELLEELAEAAARLLLL---------------LEAEADYEGFLEGVKAALLLAGLRGLagavAVLIGV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 939 EDKLKAAQEA------NRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASL------------EDTKQTN 1000
Cdd:COG1196 533 EAAYEAALEAalaaalQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALArgaigaavdlvaSDLREAD 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1001 ARLQNELDTLKENNLKT------VEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTR 1074
Cdd:COG1196 613 ARYYVLGDTLLGRTLVAarleaaLRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEE 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1075 DEVTSHQKLEEERSVLNNQLLEMKKRESEfRKDADEEKASLQKSISLTSALLTEKD-------------------AELEK 1135
Cdd:COG1196 693 LELEEALLAEEEEERELAEAEEERLEEEL-EEEALEEQLEAEREELLEELLEEEELleeealeelpeppdleeleRELER 771
|
....
gi 1907165183 1136 LRNE 1139
Cdd:COG1196 772 LERE 775
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
352-1141 |
1.76e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 65.76 E-value: 1.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 352 LQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTmveaADREKVELLNQLE 431
Cdd:pfam02463 242 LQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLK----LERRKVDDEEKLK 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 432 EEKRKVEDLQfRVEEESITKGDLEQKSPISEDPENTQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRI 511
Cdd:pfam02463 318 ESEKEKKKAE-KELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEE 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 512 MELEKDLALRAQEVAELRRRLESSKppgdVDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALH 591
Cdd:pfam02463 397 LELKSEEEKEAQLLLELARQLEDLL----KEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSED 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 592 TATEKLSKENESLRSKLDHANKENSDVIALwkSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQH 671
Cdd:pfam02463 473 LLKETQLVKLQEQLELLLSRQKLEERSQKE--SKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVI 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 672 EiESLQSKQDSERSAHAKEMETmQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKKEKFASTSEEA 751
Cdd:pfam02463 551 V-EVSATADEVEERQKLVRALT-ELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGI 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 752 VSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSsqLTKM 831
Cdd:pfam02463 629 LKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIK--KKEQ 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 832 NDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKA 911
Cdd:pfam02463 707 REKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKL 786
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 912 KYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEE-LKTQADKAKAAQTAEDAMQIMEQMTKEKTETL 990
Cdd:pfam02463 787 KVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEeLEELALELKEEQKLEKLAEEELERLEEEITKE 866
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 991 ASLEDTKQTnaRLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEEL 1070
Cdd:pfam02463 867 ELLQELLLK--EEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEE 944
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907165183 1071 GRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVT 1141
Cdd:pfam02463 945 ADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEET 1015
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
705-1236 |
2.81e-10 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 65.20 E-value: 2.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 705 KEDSLEAVKARLDSAEDQhLVEMEDTLNKLQEA--------EIKKEKFASTSEEAVSAQTRMQDTVNKLH-------QKE 769
Cdd:pfam01576 10 KEEELQKVKERQQKAESE-LKELEKKHQQLCEEknalqeqlQAETELCAEAEEMRARLAARKQELEEILHelesrleEEE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 770 EQFNVLSSELEKLRENLTDMEAKFKEKDDREDQL----VKAKEKLENDIAEIMKMSGDNSsqltKMNDELRLKERSVEEL 845
Cdd:pfam01576 89 ERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLqlekVTTEAKIKKLEEDILLLEDQNS----KLSKERKLLEERISEF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 846 QLKLTKANENASFLQK---------SIGEVTLKAEQSQQQAARKHEEEKKELEEKLLElekkmetsynQCQDLKAKYEKA 916
Cdd:pfam01576 165 TSNLAEEEEKAKSLSKlknkheamiSDLEERLKKEEKGRQELEKAKRKLEGESTDLQE----------QIAELQAQIAEL 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 917 SSETKTKHEEiLQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQ--IMEQMTKEKTEtlasLE 994
Cdd:pfam01576 235 RAQLAKKEEE-LQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRrdLGEELEALKTE----LE 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 995 DTKQTNArLQNELDTLKENNL----KTVEELNKS-----KELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVK 1065
Cdd:pfam01576 310 DTLDTTA-AQQELRSKREQEVtelkKALEEETRSheaqlQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAE 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1066 LAEELgrtRDEVTSHQKLEEERSVLNNQLLEMKKRESE---FRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTV 1142
Cdd:pfam01576 389 LQAEL---RTLQQAKQDSEHKRKKLEGQLQELQARLSEserQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSS 465
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1143 LRGENATAKSLhsvVQTLESDKVKLELKVKNLELQLKENKRQLSsssgntdaqaEEDERAQESQQMIDFLNSVIVDLQRK 1222
Cdd:pfam01576 466 LESQLQDTQEL---LQEETRQKLNLSTRLRQLEDERNSLQEQLE----------EEEEAKRNVERQLSTLQAQLSDMKKK 532
|
570
....*....|....
gi 1907165183 1223 NQDLKMKVEMMSEA 1236
Cdd:pfam01576 533 LEEDAGTLEALEEG 546
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
335-817 |
3.89e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 3.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 335 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRT 414
Cdd:COG1196 283 LEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAE 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 415 MVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKSPISEDPENTQTKLEHAR------TKELEQSLLFEKT 488
Cdd:COG1196 363 AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELeeleeaLAELEEEEEEEEE 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 489 KADKLQRELEDTRVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSLLQE-------ISALQEKLEAI 561
Cdd:COG1196 443 ALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEgflegvkAALLLAGLRGL 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 562 HTDHQGEMTSLKEHFGAREEAFQKEIKALHTATE----------KLSKENESLRSKLDHANKENSDVIALWKSKLETAIA 631
Cdd:COG1196 523 AGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDevaaaaieylKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVD 602
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 632 SHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAklmkiiKEKEDSLEA 711
Cdd:COG1196 603 LVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSR------RELLAALLE 676
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 712 VKARLDSAEDQHLVEMEDTLNKLQEAEIKKEKFASTSEEAVSAQTRMQDtvnKLHQKEEQFNVLSSELEKLRENLTDMEA 791
Cdd:COG1196 677 AEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEA---LEEQLEAEREELLEELLEEEELLEEEAL 753
|
490 500
....*....|....*....|....*.
gi 1907165183 792 KFKEKDDREDQLVKAKEKLENDIAEI 817
Cdd:COG1196 754 EELPEPPDLEELERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
351-990 |
4.42e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 4.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 351 ALQEALKEKQqhIEQLLAERDLERAEVAKATSHVGEIEQELALARdghdQHVLELEAKMDQLRTMVEAADREKVELLNQL 430
Cdd:COG1196 217 ELKEELKELE--AELLLLKLRELEAELEELEAELEELEAELEELE----AELAELEAELEELRLELEELELELEEAQAEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 431 EEEKRKVEDLQFRVEEESITKGDLEQKspisEDPENTQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRVATVSEKSR 510
Cdd:COG1196 291 YELLAELARLEQDIARLEERRRELEER----LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 511 IMELEKDLALRAQEVAELRRRLesskppgdvdmsLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKAL 590
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEEL------------LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 591 HTATEKLSKENESLRSKLDHANKENSDVIALwkSKLETAIASHQQAMEELKvsfskgigtdsAEFAELKTQIERLrldyQ 670
Cdd:COG1196 435 EEEEEEEEALEEAAEEEAELEEEEEALLELL--AELLEEAALLEAALAELL-----------EELAEAAARLLLL----L 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 671 HEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKKEKF--ASTS 748
Cdd:COG1196 498 EAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAgrATFL 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 749 EEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAE--IMKMSGDNSS 826
Cdd:COG1196 578 PLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRlrEVTLEGEGGS 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 827 QLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQC 906
Cdd:COG1196 658 AGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREEL 737
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 907 QDLKAKYEKASSETKTKHEEILQN---LQKMLADTEDKLK-------AAQEANRDLMQDMEELKTQADKAKAAqtAEDAM 976
Cdd:COG1196 738 LEELLEEEELLEEEALEELPEPPDleeLERELERLEREIEalgpvnlLAIEEYEELEERYDFLSEQREDLEEA--RETLE 815
|
650
....*....|....
gi 1907165183 977 QIMEQMTKEKTETL 990
Cdd:COG1196 816 EAIEEIDRETRERF 829
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
344-1102 |
5.46e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.32 E-value: 5.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 344 RKISGTTALQEALKEKQQH---IEQLLAERDLERAEVAKATSHVGEIEQELAlardghdqhvlELEAKMDQLRTMVEA-A 419
Cdd:TIGR02169 217 LKEKREYEGYELLKEKEALerqKEAIERQLASLEEELEKLTEEISELEKRLE-----------EIEQLLEELNKKIKDlG 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 420 DREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKSPISEDpENTQTKLEHArtkELEQSLLFEKTKADKLQRELED 499
Cdd:TIGR02169 286 EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEA-EIDKLLAEIE---ELEREIEEERKRRDKLTEEYAE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 500 TRVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPPGDvdmslSLLQEISALQEKLEAIHT---DHQGEMTSLKE-- 574
Cdd:TIGR02169 362 LKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN-----ELKRELDRLQEELQRLSEelaDLNAAIAGIEAki 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 575 -HFGAREEAFQKEIKA----LHTATEKLSKENES---LRSKLDHANKENSDVialwKSKLETAIASHQQAMEELKVSFS- 645
Cdd:TIGR02169 437 nELEEEKEDKALEIKKqewkLEQLAADLSKYEQElydLKEEYDRVEKELSKL----QRELAEAEAQARASEERVRGGRAv 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 646 -KGIGTDSAEFAELKTQIERLRLDYQHEIESLQSK-------QDSERSAHA----KEMETMQAKLMKIIKEKEDSLEAVK 713
Cdd:TIGR02169 513 eEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNrlnnvvvEDDAVAKEAiellKRRKAGRATFLPLNKMRDERRDLSI 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 714 ARLDSAEDQ--HLVEME------------DTL--NKLQEA--------------EIKKEKFAST--SEEAVSAQTRMQDT 761
Cdd:TIGR02169 593 LSEDGVIGFavDLVEFDpkyepafkyvfgDTLvvEDIEAArrlmgkyrmvtlegELFEKSGAMTggSRAPRGGILFSRSE 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 762 VNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERS 841
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE 752
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 842 VEELQLKLTKANENASFLQKSIGEVTLKAE-------QSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYE 914
Cdd:TIGR02169 753 IENVKSELKELEARIEELEEDLHKLEEALNdlearlsHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE 832
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 915 KASSETKTKHEEI----------LQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAqtaedamqiMEQMTK 984
Cdd:TIGR02169 833 KEIQELQEQRIDLkeqiksiekeIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQ---------LRELER 903
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 985 EKTETLASLEDTKQTNARLQNELDTLKENnLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAaaqksqqLSALQEENV 1064
Cdd:TIGR02169 904 KIEELEAQIEKKRKRLSELKAKLEALEEE-LSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEE-------IRALEPVNM 975
|
810 820 830 840
....*....|....*....|....*....|....*....|....
gi 1907165183 1065 K----LAEELGRTRDEVTSHQKLEEERSVLNNQL--LEMKKRES 1102
Cdd:TIGR02169 976 LaiqeYEEVLKRLDELKEKRAKLEEERKAILERIeeYEKKKREV 1019
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
454-1260 |
6.21e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 63.84 E-value: 6.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 454 LEQKSPISEDPENTQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEKDLALRAQEVAELRrrle 533
Cdd:pfam02463 178 LIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEI---- 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 534 sskppgdvdmsLSLLQEISALQEKLEAIHTDHQGEMtslkehfgaREEAFQKEIKALHTATEKLSKENESLRSKLDHANK 613
Cdd:pfam02463 254 -----------ESSKQEIEKEEEKLAQVLKENKEEE---------KEKKLQEEELKLLAKEEEELKSELLKLERRKVDDE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 614 ENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMET 693
Cdd:pfam02463 314 EKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 694 MQAKLMKIIKEKEDSLEAVKAR--LDSAEDQH-----LVEMEDTLNKLQEAEIKKEKFASTSEEAVSAQTRMQDTVNKLH 766
Cdd:pfam02463 394 EEELELKSEEEKEAQLLLELARqlEDLLKEEKkeeleILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDL 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 767 QKEEQFNVLSSELEKLRENLTDMEAKFKEKDDRE-----DQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERS 841
Cdd:pfam02463 474 LKETQLVKLQEQLELLLSRQKLEERSQKESKARSglkvlLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEV 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 842 VEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQ-DLKAKYEKASSET 920
Cdd:pfam02463 554 SATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDkRAKVVEGILKDTE 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 921 KTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQmtKEKTETLASLEDTKQTN 1000
Cdd:pfam02463 634 LTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEI--LRRQLEIKKKEQREKEE 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1001 ARLQNELDTLKENNLKTvEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVtsh 1080
Cdd:pfam02463 712 LKKLKLEAEELLADRVQ-EAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLK--- 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1081 qKLEEERSVLNNQLLEMKKRESEfRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTL 1160
Cdd:pfam02463 788 -VEEEKEEKLKAQEEELRALEEE-LKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITK 865
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1161 ESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQaEEDERAQESQQMIDFLNSVIVDLQRKNQDLKMKVEMMSEAALNG 1240
Cdd:pfam02463 866 EELLQELLLKEEELEEQKLKDELESKEEKEKEEKK-ELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEE 944
|
810 820
....*....|....*....|
gi 1907165183 1241 NGEDLNSYDSDDQEKQSKKK 1260
Cdd:pfam02463 945 ADEKEKEENNKEEEEERNKR 964
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
690-1146 |
9.12e-10 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 63.27 E-value: 9.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 690 EMETMQAKLMKIIKEKEDSLEAVKARLDSAED--------------------QHLVEMEDTLNKLQ------EAEIKK-- 741
Cdd:pfam01576 58 EAEEMRARLAARKQELEEILHELESRLEEEEErsqqlqnekkkmqqhiqdleEQLDEEEAARQKLQlekvttEAKIKKle 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 742 -------EKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDI 814
Cdd:pfam01576 138 edillleDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGES 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 815 AEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVT---------LKAEQSQQQAARKHEEEK 885
Cdd:pfam01576 218 TDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEaqiselqedLESERAARNKAEKQRRDL 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 886 KELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADK 965
Cdd:pfam01576 298 GEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEK 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 966 AKAAQTAEDA-----MQIMEQMTKEK-----------TETLASLEDTKQTNA-------RLQNELDTLKeNNLKTVEELN 1022
Cdd:pfam01576 378 AKQALESENAelqaeLRTLQQAKQDSehkrkklegqlQELQARLSESERQRAelaeklsKLQSELESVS-SLLNEAEGKN 456
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1023 --KSKELLSVENQkMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELgrtRDEVTSHQKLEEERSVLNNQLLEMKKR 1100
Cdd:pfam01576 457 ikLSKDVSSLESQ-LQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQL---EEEEEAKRNVERQLSTLQAQLSDMKKK 532
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 1907165183 1101 ESEFR---KDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGE 1146
Cdd:pfam01576 533 LEEDAgtlEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQE 581
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
352-1170 |
2.03e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.39 E-value: 2.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 352 LQEALKEKQQHIEQLLAERD--------LERAEVAKATSHVGEIEQELALARDGHDQhVLELEAKMDQLRTMVEAADREK 423
Cdd:TIGR02169 189 LDLIIDEKRQQLERLRREREkaeryqalLKEKREYEGYELLKEKEALERQKEAIERQ-LASLEEELEKLTEEISELEKRL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 424 VELLNQLEEEKRKVEDL----QFRVEEE--------SITKGDLEQKSPISEDPENTQTKLEHARTK------ELEQSLLF 485
Cdd:TIGR02169 268 EEIEQLLEELNKKIKDLgeeeQLRVKEKigeleaeiASLERSIAEKERELEDAEERLAKLEAEIDKllaeieELEREIEE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 486 EKTKADKLQRELEDTRVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPPGDvdmslSLLQEISALQEKLEAIHT-- 563
Cdd:TIGR02169 348 ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN-----ELKRELDRLQEELQRLSEel 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 564 -DHQGEMTSLKE---HFGAREEAFQKEIKA----LHTATEKLSKENES---LRSKLDHANKENSDVialwKSKLETAIAS 632
Cdd:TIGR02169 423 aDLNAAIAGIEAkinELEEEKEDKALEIKKqewkLEQLAADLSKYEQElydLKEEYDRVEKELSKL----QRELAEAEAQ 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 633 HQQAMEELKVSFS--KGIGTDSAEFAELKTQIERLRLDYQHEIESLQSK-------QDSERSAHA----KEMETMQAKLM 699
Cdd:TIGR02169 499 ARASEERVRGGRAveEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNrlnnvvvEDDAVAKEAiellKRRKAGRATFL 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 700 KIIKEKEDSLEAVKARLDSAEDQ--HLVEMEDtlnklQEAEIKKEKFAST-------SEEAVSAQTRMQDTVNKLHQKEE 770
Cdd:TIGR02169 579 PLNKMRDERRDLSILSEDGVIGFavDLVEFDP-----KYEPAFKYVFGDTlvvedieAARRLMGKYRMVTLEGELFEKSG 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 771 QFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLT 850
Cdd:TIGR02169 654 AMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE 733
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 851 KANENASFLQKSIG--EVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQ--CQDLKAKYEKAsSETKTKHEE 926
Cdd:TIGR02169 734 KLKERLEELEEDLSslEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHsrIPEIQAELSKL-EEEVSRIEA 812
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 927 ILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQtaedamqimEQMTKEKTETLASLEDTKQTNARLQNE 1006
Cdd:TIGR02169 813 RLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI---------ENLNGKKEELEEELEELEAALRDLESR 883
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1007 LDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRT---RDEVTSHQKL 1083
Cdd:TIGR02169 884 LGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEElslEDVQAELQRV 963
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1084 EEERSVL---NNQLLEMKKRESEFRKDADEEKASLQKSisltSALLTEKDAELEKLRNEVtVLRGENATAKSLHSVVQTL 1160
Cdd:TIGR02169 964 EEEIRALepvNMLAIQEYEEVLKRLDELKEKRAKLEEE----RKAILERIEEYEKKKREV-FMEAFEAINENFNEIFAEL 1038
|
890
....*....|
gi 1907165183 1161 ESDKVKLELK 1170
Cdd:TIGR02169 1039 SGGTGELILE 1048
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
595-1135 |
2.13e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.96 E-value: 2.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 595 EKLSKENESLRSKLDHANKENSdvialwksKLETAIASHQQAMEELKvsfskgigtdsAEFAELKTQIERLRLDYQHEIE 674
Cdd:TIGR04523 207 KKKIQKNKSLESQISELKKQNN--------QLKDNIEKKQQEINEKT-----------TEISNTQTQLNQLKDEQNKIKK 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 675 SLQSKQdsersahaKEMETMQAKlmkiIKEKEDSLEAVKARLDsaedqhlvemedTLNKLQEAEIKKEkfasTSEEAVSA 754
Cdd:TIGR04523 268 QLSEKQ--------KELEQNNKK----IKELEKQLNQLKSEIS------------DLNNQKEQDWNKE----LKSELKNQ 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 755 QTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDE 834
Cdd:TIGR04523 320 EKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESK 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 835 LRLKERSVEELQLKLTKANENASFLQKSIGEvtLKAEQSQQQAARKheeekkeleeKLLELEKKMETSYNQCQDLKAKYE 914
Cdd:TIGR04523 400 IQNQEKLNQQKDEQIKKLQQEKELLEKEIER--LKETIIKNNSEIK----------DLTNQDSVKELIIKNLDNTRESLE 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 915 KASSETKTKHEEI---LQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTA-EDAMQIMEQMTKEKTETL 990
Cdd:TIGR04523 468 TQLKVLSRSINKIkqnLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKlESEKKEKESKISDLEDEL 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 991 ASLEDTKQTNA------RLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENV 1064
Cdd:TIGR04523 548 NKDDFELKKENlekeidEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENE 627
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907165183 1065 KLAEELgrtRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEK 1135
Cdd:TIGR04523 628 KLSSII---KNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKELSLHYKK 695
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
406-1201 |
2.36e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 62.06 E-value: 2.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 406 EAKMDQLRTMVEAADREKVELLnqLEEEKRKVEDLQFRVEEESitKGDLEQKSPISEDPENTQTKLEHArtkELEQSLLF 485
Cdd:pfam15921 58 EVELDSPRKIIAYPGKEHIERV--LEEYSHQVKDLQRRLNESN--ELHEKQKFYLRQSVIDLQTKLQEM---QMERDAMA 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 486 E-KTKADKLQRELEDTRVATVSEKSRIMELEKDLALRAQ-EVAELRRRLESSKppgdvdmslSLLQEISALQEKLEAIHT 563
Cdd:pfam15921 131 DiRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNtQIEQLRKMMLSHE---------GVLQEIRSILVDFEEASG 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 564 DHQGEMTSLKE-HFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENsdvialwKSKLETAIASHQQAMEELKV 642
Cdd:pfam15921 202 KKIYEHDSMSTmHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSES-------QNKIELLLQQHQDRIEQLIS 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 643 SFSKGIGTDSAEFAELKTQIERLrldyQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQ 722
Cdd:pfam15921 275 EHEVEITGLTEKASSARSQANSI----QSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQ 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 723 HLVEMEDtlnkLQEAEIKKEKFastSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRE----NLTDMEAKFKEKDD 798
Cdd:pfam15921 351 LVLANSE----LTEARTERDQF---SQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDrdtgNSITIDHLRRELDD 423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 799 RE------DQLVKA-----KEKLENDIAEI------MKMSGDNSSQLTKMNDELRlkeRSVEELQLK---LTKANENASF 858
Cdd:pfam15921 424 RNmevqrlEALLKAmksecQGQMERQMAAIqgknesLEKVSSLTAQLESTKEMLR---KVVEELTAKkmtLESSERTVSD 500
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 859 LQKSI--GEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEIlQNLQKML- 935
Cdd:pfam15921 501 LTASLqeKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQI-ENMTQLVg 579
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 936 -------ADTEDKLKAAQEANrDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEK-----TETLASLEDTKQTNARL 1003
Cdd:pfam15921 580 qhgrtagAMQVEKAQLEKEIN-DRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKlvnagSERLRAVKDIKQERDQL 658
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1004 QNELDTLKE--NNLKTVEEL------NKSKELLSVENQ-KME------EFKKEIETLKQAAAQKSQQLSALQEENVKLAE 1068
Cdd:pfam15921 659 LNEVKTSRNelNSLSEDYEVlkrnfrNKSEEMETTTNKlKMQlksaqsELEQTRNTLKSMEGSDGHAMKVAMGMQKQITA 738
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1069 ELGRTRDEVTSHQKLEEERSVLNnqllemkkRESEFRKdadEEKASLQKSISLTSallTEKDaeleKLRNEVTVLRgena 1148
Cdd:pfam15921 739 KRGQIDALQSKIQFLEEAMTNAN--------KEKHFLK---EEKNKLSQELSTVA---TEKN----KMAGELEVLR---- 796
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|...
gi 1907165183 1149 takslhsvvqtleSDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDER 1201
Cdd:pfam15921 797 -------------SQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVR 836
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
701-1137 |
3.00e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 61.59 E-value: 3.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 701 IIKEKEDSLEAVKARLDSAEDQHLVEMEDTLN-KLQEAEIKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSEL 779
Cdd:PRK02224 181 VLSDQRGSLDQLKAQIEEKEEKDLHERLNGLEsELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 780 EKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSG----------DNSSQLTKMNDELRlkeRSVEELQLKL 849
Cdd:PRK02224 261 EDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGlddadaeaveARREELEDRDEELR---DRLEECRVAA 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 850 TKANENASFLQKSIGEVTLKAEQSQQQAArkheeekkeleekllelekkmetsynqcqDLKAKYEKASSETKTKHEEI-- 927
Cdd:PRK02224 338 QAHNEEAESLREDADDLEERAEELREEAA-----------------------------ELESELEEAREAVEDRREEIee 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 928 ----LQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAA-QTAEDAMQIMEQMTK-----------EKTETLA 991
Cdd:PRK02224 389 leeeIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATlRTARERVEEAEALLEagkcpecgqpvEGSPHVE 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 992 SLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQ------KMEEFKKEIETLKQAAAQKSQQLSALQEENVK 1065
Cdd:PRK02224 469 TIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRierleeRREDLEELIAERRETIEEKRERAEELRERAAE 548
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907165183 1066 LAEELGRTRDEVTS-HQKLEEERSVLNNqlLEMKKRESEFRKDADEEKASLQksisltsALLTEKDAELEKLR 1137
Cdd:PRK02224 549 LEAEAEEKREAAAEaEEEAEEAREEVAE--LNSKLAELKERIESLERIRTLL-------AAIADAEDEIERLR 612
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
335-875 |
5.76e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 60.82 E-value: 5.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 335 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDqhvleleakmdqlrt 414
Cdd:PRK02224 239 ADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAG--------------- 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 415 mVEAADREKVELlnQLEEEKRKVEDLQFRVEEESITKGDLeqkspisedpeNTQTKLEHARTKELEQSLLFEKTKADKLQ 494
Cdd:PRK02224 304 -LDDADAEAVEA--RREELEDRDEELRDRLEECRVAAQAH-----------NEEAESLREDADDLEERAEELREEAAELE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 495 RELEDTRVATVSEKSRIMELEKdlalraqEVAELRRRLESSkpPGDVDMSLSLLQEisaLQEKLEAIHTDHQGEMTSLKE 574
Cdd:PRK02224 370 SELEEAREAVEDRREEIEELEE-------EIEELRERFGDA--PVDLGNAEDFLEE---LREERDELREREAELEATLRT 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 575 HFGAREEAFQ-----------KEIK-ALHTAT--------EKLSKENESLRSKLDHANKENSDVIALwkSKLETAIASHQ 634
Cdd:PRK02224 438 ARERVEEAEAlleagkcpecgQPVEgSPHVETieedrervEELEAELEDLEEEVEEVEERLERAEDL--VEAEDRIERLE 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 635 QAMEELkvsfSKGIGTDSAEFAELKTQIERLRldyqHEIESLQSKQDSERSAHAKEMETMQAKLMKiIKEKEDSLEAVKA 714
Cdd:PRK02224 516 ERREDL----EELIAERRETIEEKRERAEELR----ERAAELEAEAEEKREAAAEAEEEAEEAREE-VAELNSKLAELKE 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 715 RLDSAED--QHLVEMEDTLNKLQEAEIKKEKFASTSEEAVSAQTRMQDTVNKLHQK--EEQFNVLSSELEKLRENLTDME 790
Cdd:PRK02224 587 RIESLERirTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEfdEARIEEAREDKERAEEYLEQVE 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 791 AKFKEKDDREDQLVKAKEKLENDIAEImkmsgdnssqltkmnDELRLKERSVEELQLKLTKANENASFLQKSIGEvtLKA 870
Cdd:PRK02224 667 EKLDELREERDDLQAEIGAVENELEEL---------------EELRERREALENRVEALEALYDEAEELESMYGD--LRA 729
|
....*
gi 1907165183 871 EQSQQ 875
Cdd:PRK02224 730 ELRQR 734
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
584-1185 |
7.67e-09 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 60.12 E-value: 7.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 584 QKEIKALHTATEKLSKENESLRSKLDHANKENSDVIA------LWKSKLETAIAS----------HQQAMEELKVSFSKG 647
Cdd:pfam05483 112 RKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKennatrHLCNLLKETCARsaektkkyeyEREETRQVYMDLNNN 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 648 IGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEM---ETMQAKLMKIIKEKEDSLEAVKARLDSAEDQhl 724
Cdd:pfam05483 192 IEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEIndkEKQVSLLLIQITEKENKMKDLTFLLEESRDK-- 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 725 VEMEDTLNKLQEAEIKK--EKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKL-RENLTDMEAKFKEKDDR-- 799
Cdd:pfam05483 270 ANQLEEKTKLQDENLKEliEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLtEEKEAQMEELNKAKAAHsf 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 800 ------------EDQLVKAKEKLEN--DIAEIMKMS-GDNSSQLTKMNDELRLKERSVEELQLKL----TKANENASFlq 860
Cdd:pfam05483 350 vvtefeattcslEELLRTEQQRLEKneDQLKIITMElQKKSSELEEMTKFKNNKEVELEELKKILaedeKLLDEKKQF-- 427
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 861 KSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEK---ASSETKTKHEEILQNLQKMLAD 937
Cdd:pfam05483 428 EKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKeklKNIELTAHCDKLLLENKELTQE 507
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 938 TED---KLKAAQEANRDLMQDMEELKTQADKAKAAQTA-EDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKEN 1013
Cdd:pfam05483 508 ASDmtlELKKHQEDIINCKKQEERMLKQIENLEEKEMNlRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEK 587
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1014 NLKTVE-ELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDE----VTSHQKLEEERS 1088
Cdd:pfam05483 588 QMKILEnKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKfeeiIDNYQKEIEDKK 667
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1089 VLNNQLLEmkkrESEFRKDADEEKASLQKSISL-TSALLTEKDAELEKLRNEVTVLRGENATAKSLH-SVVQTLESDKVK 1166
Cdd:pfam05483 668 ISEEKLLE----EVEKAKAIADEAVKLQKEIDKrCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYkNKEQEQSSAKAA 743
|
650
....*....|....*....
gi 1907165183 1167 LELKVKNLELQLKENKRQL 1185
Cdd:pfam05483 744 LEIELSNIKAELLSLKKQL 762
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
764-1188 |
1.01e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 59.65 E-value: 1.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 764 KLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDEL---RLKER 840
Cdd:TIGR04523 132 QKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLsnlKKKIQ 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 841 SVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHeeekkeleekllelekkmetsyNQCQDLKAKYEKASSET 920
Cdd:TIGR04523 212 KNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQ----------------------TQLNQLKDEQNKIKKQL 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 921 KTKHEEILQNLQKmLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTetlaSLEDTKQTN 1000
Cdd:TIGR04523 270 SEKQKELEQNNKK-IKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNK----IISQLNEQI 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1001 ARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETL--------------KQAAAQKSQQLSALQEENVKL 1066
Cdd:TIGR04523 345 SQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLesqindleskiqnqEKLNQQKDEQIKKLQQEKELL 424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1067 AEELGRTRDEVTSHQK----LEEERSVLNNQLLEMKKRESEFRKDADEEKAS---LQKSISLTSALLTEKDAELEKLRNE 1139
Cdd:TIGR04523 425 EKEIERLKETIIKNNSeikdLTNQDSVKELIIKNLDNTRESLETQLKVLSRSinkIKQNLEQKQKELKSKEKELKKLNEE 504
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1907165183 1140 VTVLRGENATAK----SLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSS 1188
Cdd:TIGR04523 505 KKELEEKVKDLTkkisSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKE 557
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
659-1210 |
1.01e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 60.13 E-value: 1.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 659 KTQIERLRLDYQHEIESLQSKQDSERSAHAKE-------METMQAKLMKIIKEKeDSLEAVKARLDSAEDQHLVEMEDTL 731
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQkfylrqsVIDLQTKLQEMQMER-DAMADIRRRESQSQEDLRNQLQNTV 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 732 NKLQEAEIKKEKFASTS----------------------------EEAVSAQTRMQDTVNKLHqkeeqFNVLSSELEK-L 782
Cdd:pfam15921 152 HELEAAKCLKEDMLEDSntqieqlrkmmlshegvlqeirsilvdfEEASGKKIYEHDSMSTMH-----FRSLGSAISKiL 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 783 RENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLtkmndelrlkersVEELQLKLTKANENASFLQKS 862
Cdd:pfam15921 227 RELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQL-------------ISEHEVEITGLTEKASSARSQ 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 863 IGEVTLKAEQSQQQAARKHEEEKKeleekllelekkmetsynQCQDLKAKYEKASS---ETKTKHEEILQNLQKMLADTE 939
Cdd:pfam15921 294 ANSIQSQLEIIQEQARNQNSMYMR------------------QLSDLESTVSQLRSelrEAKRMYEDKIEELEKQLVLAN 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 940 DKLKAAQEANRDLMQDMEELKTQADKAKAaqtaedamqimeqmTKEKTETLASLEdtKQTNARLQNElDTlkeNNLKTVE 1019
Cdd:pfam15921 356 SELTEARTERDQFSQESGNLDDQLQKLLA--------------DLHKREKELSLE--KEQNKRLWDR-DT---GNSITID 415
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1020 ELNKSKELLSVENQKMEEFKKEIETlkQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKK 1099
Cdd:pfam15921 416 HLRRELDDRNMEVQRLEALLKAMKS--ECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLES 493
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1100 REsefrKDADEEKASLQ---KSISLTSALLTE-------KDAELEKLRNEVTVLRGENATAKSLHsvVQTLESDKVKLEL 1169
Cdd:pfam15921 494 SE----RTVSDLTASLQekeRAIEATNAEITKlrsrvdlKLQELQHLKNEGDHLRNVQTECEALK--LQMAEKDKVIEIL 567
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 1907165183 1170 KvknlelQLKENKRQLSSSSGNTdAQAEEDERAQESQQMID 1210
Cdd:pfam15921 568 R------QQIENMTQLVGQHGRT-AGAMQVEKAQLEKEIND 601
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
656-1206 |
1.74e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.18 E-value: 1.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 656 AELKTQIERLR------LDYQhEI-ESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQH----- 723
Cdd:COG1196 196 GELERQLEPLErqaekaERYR-ELkEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELeelrl 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 724 -LVEMEDTLNKLQEAE-IKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDRED 801
Cdd:COG1196 275 eLEELELELEEAQAEEyELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 802 QLVKAKEKLENDIAEimkmsgDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKh 881
Cdd:COG1196 355 EAEAELAEAEEALLE------AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE- 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 882 EEEKKELEEKLLELEKKMETSYNQcQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDL-MQDMEELK 960
Cdd:COG1196 428 EALAELEEEEEEEEEALEEAAEEE-AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLeAEADYEGF 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 961 TQADKAKAAQTAED----AMQIMEQMTKEKTETLASLEDTKQTNARLQNELD------TLKENNL--KTVEELNKSKELL 1028
Cdd:COG1196 507 LEGVKAALLLAGLRglagAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVaaaaieYLKAAKAgrATFLPLDKIRARA 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1029 SVENQKMEEFKKE----IETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEF 1104
Cdd:COG1196 587 ALAAALARGAIGAavdlVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGS 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1105 RKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQ 1184
Cdd:COG1196 667 RRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEE 746
|
570 580
....*....|....*....|..
gi 1907165183 1185 LSSSSGNTDAQAEEDERAQESQ 1206
Cdd:COG1196 747 LLEEEALEELPEPPDLEELERE 768
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
634-972 |
1.80e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.31 E-value: 1.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 634 QQAMEELKVsFSKGIGTDSAEFAELKTQIERLRLDYQHEIE--SLQS-KQDSERSAHAKEMETMQAKLMKI---IKEKED 707
Cdd:TIGR02169 173 EKALEELEE-VEENIERLDLIIDEKRQQLERLRREREKAERyqALLKeKREYEGYELLKEKEALERQKEAIerqLASLEE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 708 SLEAVKARLDSAEDQhLVEMEDTLNKLqEAEIK----------KEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSS 777
Cdd:TIGR02169 252 ELEKLTEEISELEKR-LEEIEQLLEEL-NKKIKdlgeeeqlrvKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEA 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 778 ELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEndiaeimkmsgdnssqltkmnDELRLKERSVEELQLKLTKANENAS 857
Cdd:TIGR02169 330 EIDKLLAEIEELEREIEEERKRRDKLTEEYAELK---------------------EELEDLRAELEEVDKEFAETRDELK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 858 FLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELekkmetsyNQCQDLKAKYEKASSETKTKHEEI------LQNL 931
Cdd:TIGR02169 389 DYREKLEKLKREINELKRELDRLQEELQRLSEELADLN--------AAIAGIEAKINELEEEKEDKALEIkkqewkLEQL 460
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1907165183 932 QKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTA 972
Cdd:TIGR02169 461 AADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARA 501
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
334-1043 |
4.77e-08 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 57.81 E-value: 4.77e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 334 LLTETSSRYARKISGTTALQEALKEKQQHIEQLLaERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDqlr 413
Cdd:pfam05483 159 LLKETCARSAEKTKKYEYEREETRQVYMDLNNNI-EKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKE--- 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 414 tmVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKspisedpentqTKLEHARTKELEQsllfektKADKL 493
Cdd:pfam05483 235 --INDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEK-----------TKLQDENLKELIE-------KKDHL 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 494 QRELEDTRVATVSEKSRIMELEKDLALRAQEVAELRRRLESSkppgdvdmslslLQEISALQEKLEAIHTDHQGEMTSLK 573
Cdd:pfam05483 295 TKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQ------------MEELNKAKAAHSFVVTEFEATTCSLE 362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 574 EHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVialwkSKLETAIASHQQAMEELKvsfskgigtdsa 653
Cdd:pfam05483 363 ELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVEL-----EELKKILAEDEKLLDEKK------------ 425
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 654 efaELKTQIERLRLDYQHEIESLQSKQdsersahaKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNK 733
Cdd:pfam05483 426 ---QFEKIAEELKGKEQELIFLLQARE--------KEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHC 494
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 734 LQEAEIKKEKFASTSEEAVSAQTRMQDTVNKLHQKE---EQFNVLSSELEKLRENLTDMEAKFKEK-DDREDQLVKAKEK 809
Cdd:pfam05483 495 DKLLLENKELTQEASDMTLELKKHQEDIINCKKQEErmlKQIENLEEKEMNLRDELESVREEFIQKgDEVKCKLDKSEEN 574
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 810 LENDIAEIMKMSGDNSSQLTKMND---ELRLKERSVEELQlkltkaNENASFLQKSigevtlKAEQSQQQAarkheeekk 886
Cdd:pfam05483 575 ARSIEYEVLKKEKQMKILENKCNNlkkQIENKNKNIEELH------QENKALKKKG------SAENKQLNA--------- 633
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 887 eLEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKA 966
Cdd:pfam05483 634 -YEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKH 712
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907165183 967 KaaqtaedamQIMEQMTKEKTETLASLEDTKQTNARLQNELDTlKENNLKTveELNKSKELLSVENQKMEEFKKEIE 1043
Cdd:pfam05483 713 K---------HQYDKIIEERDSELGLYKNKEQEQSSAKAALEI-ELSNIKA--ELLSLKKQLEIEKEEKEKLKMEAK 777
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
360-1121 |
7.91e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.05 E-value: 7.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 360 QQHIEQLLAERdleraevakaTSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVED 439
Cdd:pfam15921 73 KEHIERVLEEY----------SHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQED 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 440 LQFRVEEesiTKGDLEQKSPISEDP-ENTQTKLEHARTKELEQ--------SLL--FEKTKADKLQrelEDTRVATV--- 505
Cdd:pfam15921 143 LRNQLQN---TVHELEAAKCLKEDMlEDSNTQIEQLRKMMLSHegvlqeirSILvdFEEASGKKIY---EHDSMSTMhfr 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 506 ---SEKSRIM-ELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSLLQEisalQEKLEAIHTDHQGEMTSLKEHFGAREE 581
Cdd:pfam15921 217 slgSAISKILrELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQH----QDRIEQLISEHEVEITGLTEKASSARS 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 582 AFQKEIKALHTATEKLSKEN--------------ESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEElKVSFSKg 647
Cdd:pfam15921 293 QANSIQSQLEIIQEQARNQNsmymrqlsdlestvSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTE-RDQFSQ- 370
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 648 igtdsaEFAELKTQIERLRLD-YQHEIE-SLQSKQDSE----------------RSAHAKEMETMQAK-LMKIIKEK--- 705
Cdd:pfam15921 371 ------ESGNLDDQLQKLLADlHKREKElSLEKEQNKRlwdrdtgnsitidhlrRELDDRNMEVQRLEaLLKAMKSEcqg 444
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 706 --EDSLEAVKARLDSAED-----QHLVEMEDTLNKLQEAEIKKEKFASTSEEAVSaqtrmqDTVNKLHQKEEQFNVLSSE 778
Cdd:pfam15921 445 qmERQMAAIQGKNESLEKvssltAQLESTKEMLRKVVEELTAKKMTLESSERTVS------DLTASLQEKERAIEATNAE 518
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 779 LEKLRENLTDMEAKFKEKDDREDQLVKAKEKLE---------NDIAEIMKMSGDNSSQLT-------------KMNDELR 836
Cdd:pfam15921 519 ITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEalklqmaekDKVIEILRQQIENMTQLVgqhgrtagamqveKAQLEKE 598
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 837 LKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQ-QAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEK 915
Cdd:pfam15921 599 INDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLvNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEV 678
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 916 ASSETKTKHEEILQNLQKMladtEDKLKAAQ---EANRDLMQDMEELKTQADKAkaaqtaedAMQIMEQMTKEKTETLAs 992
Cdd:pfam15921 679 LKRNFRNKSEEMETTTNKL----KMQLKSAQselEQTRNTLKSMEGSDGHAMKV--------AMGMQKQITAKRGQIDA- 745
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 993 ledtkqtnarLQNELDTLKEnnlkTVEELNKSKELLSVENQKMeefkkeietlkqaaaqkSQQLSALQEENVKLAEELGR 1072
Cdd:pfam15921 746 ----------LQSKIQFLEE----AMTNANKEKHFLKEEKNKL-----------------SQELSTVATEKNKMAGELEV 794
|
810 820 830 840
....*....|....*....|....*....|....*....|....*....
gi 1907165183 1073 TRDEvtsHQKLEEErsvLNNQLLEMKKRESEFRKDADEEKASLQKSISL 1121
Cdd:pfam15921 795 LRSQ---ERRLKEK---VANMEVALDKASLQFAECQDIIQRQEQESVRL 837
|
|
| CLIP1_ZNF |
pfam16641 |
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of ... |
1302-1318 |
9.66e-08 |
|
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of the cytoplasmic linker protein CLIP1 (CLIP170). It forms a complex with the CAP-Gly domain of Dynactin.
Pssm-ID: 465212 Cd Length: 17 Bit Score: 49.00 E-value: 9.66e-08
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
742-1231 |
4.54e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 54.26 E-value: 4.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 742 EKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVK--------------AK 807
Cdd:TIGR04523 40 KKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSdlskinseikndkeQK 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 808 EKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSigevtlKAEQSQQQAARKHEEEKKE 887
Cdd:TIGR04523 120 NKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENE------LNLLEKEKLNIQKNIDKIK 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 888 LEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAK 967
Cdd:TIGR04523 194 NKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQ 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 968 aaQTAEDAMQIMEQMTKEKTETLASLEDTKQ-----TNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEI 1042
Cdd:TIGR04523 274 --KELEQNNKKIKELEKQLNQLKSEISDLNNqkeqdWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKEL 351
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1043 ETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVtshQKLEEERSVLNNQLLEMKKRESEFR---KDADEEKASLQKSI 1119
Cdd:TIGR04523 352 TNSESENSEKQRELEEKQNEIEKLKKENQSYKQEI---KNLESQINDLESKIQNQEKLNQQKDeqiKKLQQEKELLEKEI 428
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1120 SLTSALLTEKDAELEKLRNEVTVLrgeNATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLssssgntdaqaeed 1199
Cdd:TIGR04523 429 ERLKETIIKNNSEIKDLTNQDSVK---ELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKEL-------------- 491
|
490 500 510
....*....|....*....|....*....|..
gi 1907165183 1200 eraQESQQMIDFLNSVIVDLQRKNQDLKMKVE 1231
Cdd:TIGR04523 492 ---KSKEKELKKLNEEKKELEEKVKDLTKKIS 520
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
999-1216 |
6.37e-07 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 54.15 E-value: 6.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 999 TNARLQNELDTLKENNLKTVEE------LNKSKELLsvenQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELG- 1071
Cdd:PRK11281 37 TEADVQAQLDALNKQKLLEAEDklvqqdLEQTLALL----DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDe 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1072 --RTRDEVTSHQKLEEERSVLNNQLLEMKKRESEfrkdADEEKASLQKSISLTSALLTEKDAELEKLRNEvtvLRGENAT 1149
Cdd:PRK11281 113 etRETLSTLSLRQLESRLAQTLDQLQNAQNDLAE----YNSQLVSLQTQPERAQAALYANSQRLQQIRNL---LKGGKVG 185
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907165183 1150 AKSLHSvvqtleSDKVKLELKVKNLELQLKENKRQLSSSSGNTD-AQAEED---ERAQESQQMIDFLNSVI 1216
Cdd:PRK11281 186 GKALRP------SQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDlLQKQRDyltARIQRLEHQLQLLQEAI 250
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
810-1198 |
8.31e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 8.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 810 LENDIAEIMKMSGdnsSQLTKMNDELRlkerSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELE 889
Cdd:TIGR02169 140 LQGDVTDFISMSP---VERRKIIDEIA----GVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAER 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 890 ekllelekkmetsYNQCQDLKAKYE-KASSETKTKHEEILQNLQKMLADTE---DKLKAAQEANRDLMQDMEELKTQADK 965
Cdd:TIGR02169 213 -------------YQALLKEKREYEgYELLKEKEALERQKEAIERQLASLEeelEKLTEEISELEKRLEEIEQLLEELNK 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 966 AKAAQTAEDAMQIMEQMTkektETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETL 1045
Cdd:TIGR02169 280 KIKDLGEEEQLRVKEKIG----ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKL 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1046 KQAAAQKSQQLSAL----QEENVKLAEELGRTRDEVTSHQKLEEERSVLN---NQLLEMKKRESEFRKDADEEKASLQKS 1118
Cdd:TIGR02169 356 TEEYAELKEELEDLraelEEVDKEFAETRDELKDYREKLEKLKREINELKrelDRLQEELQRLSEELADLNAAIAGIEAK 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1119 ISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTlESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEE 1198
Cdd:TIGR02169 436 INELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE-EYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEE 514
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
596-1174 |
1.05e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 53.52 E-value: 1.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 596 KLSKENESLRSKLDHANKENSDVialwKSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELK-----TQIERLRLDYQ 670
Cdd:TIGR01612 1115 KIKDDIKNLDQKIDHHIKALEEI----KKKSENYIDEIKAQINDLEDVADKAISNDDPEEIEKKienivTKIDKKKNIYD 1190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 671 H------EIESLQSKQDSERSAHAKEMETMQAK----LMKIIKEKEDSLEAVKArldsaedqhlveMEDTLNKLQEAEIK 740
Cdd:TIGR01612 1191 EikkllnEIAEIEKDKTSLEEVKGINLSYGKNLgklfLEKIDEEKKKSEHMIKA------------MEAYIEDLDEIKEK 1258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 741 KEKFASTSEEAVSAQTRMqDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKM 820
Cdd:TIGR01612 1259 SPEIENEMGIEMDIKAEM-ETFNISHDDDKDHHIISKKHDENISDIREKSLKIIEDFSEESDINDIKKELQKNLLDAQKH 1337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 821 SGD---------NSSQLTKMN------DELRLKERSVEELQLKLTKANENASFLQKSIGE-VTLKAEQSQQQAA--RKHE 882
Cdd:TIGR01612 1338 NSDinlylneiaNIYNILKLNkikkiiDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDdINLEECKSKIESTldDKDI 1417
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 883 EEKKELEEKLLELEKKMETSYNqcqdlkaKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQE-ANRDLMQDMEELKT 961
Cdd:TIGR01612 1418 DECIKKIKELKNHILSEESNID-------TYFKNADENNENVLLLFKNIEMADNKSQHILKIKKDnATNDHDFNINELKE 1490
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 962 QADKAKAAQTAEDA--------MQIMEQMTKEKTETLasledTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVE-- 1031
Cdd:TIGR01612 1491 HIDKSKGCKDEADKnakaieknKELFEQYKKDVTELL-----NKYSALAIKNKFAKTKKDSEIIIKEIKDAHKKFILEae 1565
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1032 --NQKMEEFKKEIETLKQAAAQKSQ--------QLSALQEEN--VKLAEELGRTRDEVTSHQKLEEERSVL--NNQLLEM 1097
Cdd:TIGR01612 1566 ksEQKIKEIKKEKFRIEDDAAKNDKsnkaaidiQLSLENFENkfLKISDIKKKINDCLKETESIEKKISSFsiDSQDTEL 1645
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1098 KKRESEFR--KDADEEKASLQKSISLTSALLTEKDAELEKLRN---------EVTVLRGENATAKSLHsvvQTLESDKVK 1166
Cdd:TIGR01612 1646 KENGDNLNslQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIdvdqhkknyEIGIIEKIKEIAIANK---EEIESIKEL 1722
|
....*...
gi 1907165183 1167 LELKVKNL 1174
Cdd:TIGR01612 1723 IEPTIENL 1730
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
923-1085 |
1.09e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 53.23 E-value: 1.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 923 KHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAmqimEQMTKEKTETLASLEDTKQTNAR 1002
Cdd:COG4717 85 EKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEAL----EAELAELPERLEELEERLEELRE 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1003 LQNELDTLKENNLKTVEELNKSKELLSVENQK-MEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQ 1081
Cdd:COG4717 161 LEEELEELEAELAELQEELEELLEQLSLATEEeLQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAA 240
|
....
gi 1907165183 1082 KLEE 1085
Cdd:COG4717 241 LEER 244
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
669-1232 |
1.57e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.05 E-value: 1.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 669 YQHEIESLQSKQDSERSAHAKEMetmqaklmKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKKEKFASTS 748
Cdd:pfam02463 140 QGGKIEIIAMMKPERRLEIEEEA--------AGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALE 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 749 EEAVSAQTRMQD---TVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKM-SGDN 824
Cdd:pfam02463 212 YYQLKEKLELEEeylLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEeLKLL 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 825 SSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAArKHEEEKKELEEKLLELEKKMETSYN 904
Cdd:pfam02463 292 AKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELK-ELEIKREAEEEEEEELEKLQEKLEQ 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 905 QCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTK 984
Cdd:pfam02463 371 LEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEK 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 985 EKTETLASLEDTKQ----------TNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEE-FKKEIETLKQAAAQKS 1053
Cdd:pfam02463 451 EELEKQELKLLKDElelkksedllKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLaLIKDGVGGRIISAHGR 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1054 QQLSALQEENVKLAEELGRTRDEVTSHQKLEEERS---VLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKD 1130
Cdd:pfam02463 531 LGDLGVAVENYKVAISTAVIVEVSATADEVEERQKlvrALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDK 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1131 AELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQQMID 1210
Cdd:pfam02463 611 ATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELA 690
|
570 580
....*....|....*....|..
gi 1907165183 1211 FLNSVIVDLQRKNQDLKMKVEM 1232
Cdd:pfam02463 691 KEEILRRQLEIKKKEQREKEEL 712
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
672-1100 |
1.84e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.46 E-value: 1.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 672 EIESLQSKQDSERSAHAKEMETMQAKLmKIIKEKEDSLEAVKARLDSAEDQhLVEMEDTLNKLQEAEIKKEKfastseea 751
Cdd:COG4717 54 EADELFKPQGRKPELNLKELKELEEEL-KEAEEKEEEYAELQEELEELEEE-LEELEAELEELREELEKLEK-------- 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 752 vsaQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEndiAEIMKMSGDNSSQLTKM 831
Cdd:COG4717 124 ---LLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELE---ELLEQLSLATEEELQDL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 832 NDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDL-- 909
Cdd:COG4717 198 AEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIag 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 910 -----------------KAKYEKASSETKTKHEEILQNLQKM-----LADTEDKLKAAQEANRDLMQDMEELKTQADKAK 967
Cdd:COG4717 278 vlflvlgllallflllaREKASLGKEAEELQALPALEELEEEeleelLAALGLPPDLSPEELLELLDRIEELQELLREAE 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 968 AAQTAEDAMQIMEQMTK-------EKTETLASLEDTKQTNARLQNELDTLKENnlktVEELNKSKELLSVENQKmEEFKK 1040
Cdd:COG4717 358 ELEEELQLEELEQEIAAllaeagvEDEEELRAALEQAEEYQELKEELEELEEQ----LEELLGELEELLEALDE-EELEE 432
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1041 EIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEvTSHQKLEEERSVLNNQLLEMKKR 1100
Cdd:COG4717 433 ELEELEEELEELEEELEELREELAELEAELEQLEED-GELAELLQELEELKAELRELAEE 491
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
445-1108 |
2.13e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 52.28 E-value: 2.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 445 EEESITKGDLEQKSPISEDPENTQTKLEhartKELEQSLLFEKTKADKLQRELEdtrvaTVSEKSRIMELEKDLALRAQE 524
Cdd:TIGR00618 201 LRSQLLTLCTPCMPDTYHERKQVLEKEL----KHLREALQQTQQSHAYLTQKRE-----AQEEQLKKQQLLKQLRARIEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 525 VAELRRRLESSKPPGDVDMSLSLLQEISA----LQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKE---------IKALH 591
Cdd:TIGR00618 272 LRAQEAVLEETQERINRARKAAPLAAHIKavtqIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQssieeqrrlLQTLH 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 592 TATEKLSKENESLRSKLDHANKENSDV--IALWKSKLETAIASHQQAMEELKV--SFSKGIGTDSAEFAELKTQIERLRL 667
Cdd:TIGR00618 352 SQEIHIRDAHEVATSIREISCQQHTLTqhIHTLQQQKTTLTQKLQSLCKELDIlqREQATIDTRTSAFRDLQGQLAHAKK 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 668 DYQHEIESLQSKQ--DSERSAHAKEMETMQAKLMKIIKEKEDSLEAVK------ARLDSAEDQHLVEMEDTLNKLQEAEI 739
Cdd:TIGR00618 432 QQELQQRYAELCAaaITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEqihlqeTRKKAVVLARLLELQEEPCPLCGSCI 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 740 KKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMK 819
Cdd:TIGR00618 512 HPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQN 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 820 MSgDNSSQLTKMNDELRLKERsvEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAA--RKHEEEKKELEEKLLELEK 897
Cdd:TIGR00618 592 IT-VRLQDLTEKLSEAEDMLA--CEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTAlhALQLTLTQERVREHALSIR 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 898 KMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLkaaqEANRDLMQDMEELKTQADKAKAAQTAEDAMQ 977
Cdd:TIGR00618 669 VLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHI----EEYDREFNEIENASSSLGSDLAAREDALNQS 744
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 978 IMEQMTKEKTETLASLEDTKQTNARLQNELDTLKE---------NNLKTVEELNKS-KELLSVENQKMEEFKKEIETLKQ 1047
Cdd:TIGR00618 745 LKELMHQARTVLKARTEAHFNNNEEVTAALQTGAElshlaaeiqFFNRLREEDTHLlKTLEAEIGQEIPSDEDILNLQCE 824
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907165183 1048 AAAQKSQQLSALQEENvklaeelGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDA 1108
Cdd:TIGR00618 825 TLVQEEEQFLSRLEEK-------SATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKL 878
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
750-1235 |
2.16e-06 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 52.05 E-value: 2.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 750 EAVSAQTRMQDTVNKLHQKEEQFNVLSSELEK----LRENLTDMEAKFKEKDDRedqlVKAKEKLENDIAEIMKMSGDNS 825
Cdd:pfam05557 3 ELIESKARLSQLQNEKKQMELEHKRARIELEKkasaLKRQLDRESDRNQELQKR----IRLLEKREAEAEEALREQAELN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 826 SQLTKMNDELRLKERsveELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKheeekkeleekllelEKKMETSYNQ 905
Cdd:pfam05557 79 RLKKKYLEALNKKLN---EKESQLADAREVISCLKNELSELRRQIQRAELELQST---------------NSELEELQER 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 906 CQDLKAKYEKASsetktKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQadKAKAAQTAEdamqiMEQMTKE 985
Cdd:pfam05557 141 LDLLKAKASEAE-----QLRQNLEKQQSSLAEAEQRIKELEFEIQSQEQDSEIVKNS--KSELARIPE-----LEKELER 208
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 986 KTETLASLEDTKQTNARLQNELDTLKeNNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQK-------SQQLSA 1058
Cdd:pfam05557 209 LREHNKHLNENIENKLLLKEEVEDLK-RKLEREEKYREEAATLELEKEKLEQELQSWVKLAQDTGLNlrspedlSRRIEQ 287
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1059 LQEENVKLAEELG----RTRDEVTSHQKLEEERSVLNNQLLEMKKResefRKDADEEKASLQKSISLTSallTEKDAELE 1134
Cdd:pfam05557 288 LQQREIVLKEENSsltsSARQLEKARRELEQELAQYLKKIEDLNKK----LKRHKALVRRLQRRVLLLT---KERDGYRA 360
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1135 KLRNEVTVLRGENATAKSLHSVvqtLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDE----RAQESQQMID 1210
Cdd:pfam05557 361 ILESYDKELTMSNYSPQLLERI---EEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERElqalRQQESLADPS 437
|
490 500
....*....|....*....|....*
gi 1907165183 1211 FLNSVIVDLQRKNQDLKMKVEMMSE 1235
Cdd:pfam05557 438 YSKEEVDSLRRKLETLELERQRLRE 462
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
360-1065 |
2.68e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.89 E-value: 2.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 360 QQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVED 439
Cdd:TIGR00618 151 QGEFAQFLKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKH 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 440 LQFRVEEESITKGDLEQKSPISEDPENTQTKLEHARTKEleQSLLFEKTKADKLQRELEDTRVAT--VSEKSRIMELEKD 517
Cdd:TIGR00618 231 LREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARI--EELRAQEAVLEETQERINRARKAAplAAHIKAVTQIEQQ 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 518 LALRAQEVAELRRRLES--SKPPGDVDMSLSLLQEISALQEKLEA-IHTDHQGEM-TSLKEHFgAREEAFQKEIKALHTA 593
Cdd:TIGR00618 309 AQRIHTELQSKMRSRAKllMKRAAHVKQQSSIEEQRRLLQTLHSQeIHIRDAHEVaTSIREIS-CQQHTLTQHIHTLQQQ 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 594 TEKLSKENESLRSKLDHANKENSDVIALWKS----KLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKT-QIERLRLD 668
Cdd:TIGR00618 388 KTTLTQKLQSLCKELDILQREQATIDTRTSAfrdlQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKiHLQESAQS 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 669 YQHEIESLQSKQD---------SERSAHAKEMETMQAKLMKiiKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEI 739
Cdd:TIGR00618 468 LKEREQQLQTKEQihlqetrkkAVVLARLLELQEEPCPLCG--SCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEE 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 740 KKE-KFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIaEIM 818
Cdd:TIGR00618 546 DVYhQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKL-QPE 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 819 KMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQ--------KSIGEVTLKAEQSQQQAARKHEEEKKELEE 890
Cdd:TIGR00618 625 QDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSirvlpkelLASRQLALQKMQSEKEQLTYWKEMLAQCQT 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 891 KLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEAN-RDLMQDMEELKTQADKAKAA 969
Cdd:TIGR00618 705 LLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHfNNNEEVTAALQTGAELSHLA 784
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 970 QTAEDAMQIMEQMTKEKTETLASLE---DTKQTNARLQNELDTLKENNLKT-VEELNKSKELLSVENQKMEEFKKEIETL 1045
Cdd:TIGR00618 785 AEIQFFNRLREEDTHLLKTLEAEIGqeiPSDEDILNLQCETLVQEEEQFLSrLEEKSATLGEITHQLLKYEECSKQLAQL 864
|
730 740
....*....|....*....|
gi 1907165183 1046 KQAAAQKSQQLSALQEENVK 1065
Cdd:TIGR00618 865 TQEQAKIIQLSDKLNGINQI 884
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
352-1103 |
3.90e-06 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 51.36 E-value: 3.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 352 LQEALKEKQQHIEQLLAERDLERAEVAKATSHVG-----EIEQELALARDGHDQhvleLEAKMDQLRTMVEaaDREKVEL 426
Cdd:pfam10174 1 LQAQLRDLQRENELLRRELDIKESKLGSSMNSIKtfwspELKKERALRKEEAAR----ISVLKEQYRVTQE--ENQHLQL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 427 LNQ-LEEEKRKVEDL-QFRVEEESITKGDLEQKSPISEDPENTQTKLEHARTKELEQSLLFEKTkadklQRELEdtrvat 504
Cdd:pfam10174 75 TIQaLQDELRAQRDLnQLLQQDFTTSPVDGEDKFSTPELTEENFRRLQSEHERQAKELFLLRKT-----LEEME------ 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 505 vsekSRIMELEKDLALRAQEVAELRRRLESSKPP-----GDVDMSLSLLQEISALQEkLEAIHTDHQGEMTSLKEHFGAR 579
Cdd:pfam10174 144 ----LRIETQKQTLGARDESIKKLLEMLQSKGLPkksgeEDWERTRRIAEAEMQLGH-LEVLLDQKEKENIHLREELHRR 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 580 EEAFQK--EIKALHTATEKlskeNESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKgigtdsAEFae 657
Cdd:pfam10174 219 NQLQPDpaKTKALQTVIEM----KDTKISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSH------SKF-- 286
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 658 LKTQIERLRLDYQH---EIESLQSK------QDSERSAHA---KEMETMQAKLMKIIKEKEDSLeavKARLDsaedqhlv 725
Cdd:pfam10174 287 MKNKIDQLKQELSKkesELLALQTKletltnQNSDCKQHIevlKESLTAKEQRAAILQTEVDAL---RLRLE-------- 355
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 726 EMEDTLNKlqeaeiKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDRedqlVK 805
Cdd:pfam10174 356 EKESFLNK------KTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKER----VK 425
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 806 AkekLENDiaeimkmSGDNSSQLTKMNDELRLKERSVEELQLKltKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEK 885
Cdd:pfam10174 426 S---LQTD-------SSNTDTALTTLEEALSEKERIIERLKEQ--REREDRERLEELESLKKENKDLKEKVSALQPELTE 493
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 886 KELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADK 965
Cdd:pfam10174 494 KESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRTNPEINDRIRLLEQEVARYKEE 573
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 966 AKAAQT-AEDAMQIMEQMTKEKT---ETLASLEDTKQTNARLQNeldtLKENNLKTVEELNKSKELlsvenQKMEEFKKE 1041
Cdd:pfam10174 574 SGKAQAeVERLLGILREVENEKNdkdKKIAELESLTLRQMKEQN----KKVANIKHGQQEMKKKGA-----QLLEEARRR 644
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907165183 1042 IETLKQAAAQksQQLSALQEENVKLAEELGRTRDEVTS-HQKLEEERSVLNNQLLEMKKRESE 1103
Cdd:pfam10174 645 EDNLADNSQQ--LQLEELMGALEKTRQELDATKARLSStQQSLAEKDGHLTNLRAERRKQLEE 705
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
907-1231 |
3.90e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.58 E-value: 3.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 907 QDLKAKYEKASSETKTKHEEIlQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKA-----AQTAEDAMQIMEQ 981
Cdd:PRK02224 240 DEVLEEHEERREELETLEAEI-EDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAeagldDADAEAVEARREE 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 982 MTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVE--------------ELNKSKELLSVENQKMEEFKKEIETLKQ 1047
Cdd:PRK02224 319 LEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEEraeelreeaaelesELEEAREAVEDRREEIEELEEEIEELRE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1048 AAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQ-KLEEERSVL--NNQLLEMKK--------RESEFRKDADEEKASLQ 1116
Cdd:PRK02224 399 RFGDAPVDLGNAEDFLEELREERDELREREAELEaTLRTARERVeeAEALLEAGKcpecgqpvEGSPHVETIEEDRERVE 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1117 ksisltsalltEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQ---LKENKRQLSSS---SG 1190
Cdd:PRK02224 479 -----------ELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERretIEEKRERAEELrerAA 547
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1907165183 1191 NTDAQAEE-DERAQESQQMIDFLNSVIVDLQRKNQDLKMKVE 1231
Cdd:PRK02224 548 ELEAEAEEkREAAAEAEEEAEEAREEVAELNSKLAELKERIE 589
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
775-1012 |
5.26e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 5.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 775 LSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKane 854
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA--- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 855 nasfLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLElekkmetsynqcqdlkAKYEKASSETKTKHEEILQNLQKM 934
Cdd:COG4942 102 ----QKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRR----------------LQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165183 935 LADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTaedamQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKE 1012
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAERQ-----KLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
400-955 |
7.11e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 7.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 400 QHVLELEAKMDQLRTMVEAADrEKVELLNQLEEEKRKVEDLQfrveeesitkgdleqksPISEDPENTQTKLEHARTKEL 479
Cdd:COG4913 215 EYMLEEPDTFEAADALVEHFD-DLERAHEALEDAREQIELLE-----------------PIRELAERYAAARERLAELEY 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 480 EQSLL---FEKTKADKLQRELEDTRVATVSEKSRIMELEKDLALRAQEVAELRRRLESSkppgDVDMSLSLLQEISALQE 556
Cdd:COG4913 277 LRAALrlwFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGN----GGDRLEQLEREIERLER 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 557 KLEAI---HTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALwKSKLETAIASH 633
Cdd:COG4913 353 ELEERerrRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRE-LRELEAEIASL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 634 QQ-------AMEELKVSFSKGIGTDSAE---FAEL----------KTQIERL---------------------------- 665
Cdd:COG4913 432 ERrksnipaRLLALRDALAEALGLDEAElpfVGELievrpeeerwRGAIERVlggfaltllvppehyaaalrwvnrlhlr 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 666 -RLDYQHEIESLQSKQDSERSAHakemeTMQAKLmkIIKEKEDSlEAVKARLDSAEDQHLVEMEDTLnklqeaeiKKEKF 744
Cdd:COG4913 512 gRLVYERVRTGLPDPERPRLDPD-----SLAGKL--DFKPHPFR-AWLEAELGRRFDYVCVDSPEEL--------RRHPR 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 745 ASTSEEAVSAQTRM----------------QDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKE 808
Cdd:COG4913 576 AITRAGQVKGNGTRhekddrrrirsryvlgFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAE 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 809 KLENDI------AEImkmsGDNSSQLTKM---NDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAAR 879
Cdd:COG4913 656 YSWDEIdvasaeREI----AELEAELERLdasSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDE 731
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907165183 880 KHEEEKKELEEKLLELEkkmetsynqcQDLKAKYEKASSETKTKheEILQNLQKMLADTEDKLKAAQEANRDLMQD 955
Cdd:COG4913 732 LQDRLEAAEDLARLELR----------ALLEERFAAALGDAVER--ELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
334-1237 |
1.04e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.17 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 334 LLTETSSRYARKISGTTALQEALKEKQQHIEQLlaERDLERAEVAKATSHVGEIEQELALARdgHDQHVLELEAKMDQLR 413
Cdd:pfam01576 76 ILHELESRLEEEEERSQQLQNEKKKMQQHIQDL--EEQLDEEEAARQKLQLEKVTTEAKIKK--LEEDILLLEDQNSKLS 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 414 TMVEAADREKVELLNQLEEEKRKVEDLqfrveeesiTKGDLEQKSPISEdpentqtkLEHARTKELEQSLLFEKTKAdKL 493
Cdd:pfam01576 152 KERKLLEERISEFTSNLAEEEEKAKSL---------SKLKNKHEAMISD--------LEERLKKEEKGRQELEKAKR-KL 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 494 QRELEDTRVATVSEKSRIMELEKDLALRAQEVAELRRRLE-SSKPPGDVDMSLSLLQ-EISALQEKLEAiHTDHQGEMTS 571
Cdd:pfam01576 214 EGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEeETAQKNNALKKIRELEaQISELQEDLES-ERAARNKAEK 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 572 LKEHFGAREEAFQKEIKalhtATEKLSKENESLRSKLDHAnkensdvIALWKSKLETAIASHQQAMEELKVSFSKGIgtd 651
Cdd:pfam01576 293 QRRDLGEELEALKTELE----DTLDTTAAQQELRSKREQE-------VTELKKALEEETRSHEAQLQEMRQKHTQAL--- 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 652 sAEFAELKTQIERLRLDYQHEIESLQskqdSERSAHAKEMETMQAKLMKI---IKEKEDSLEAVKARLDSAEDQHlVEME 728
Cdd:pfam01576 359 -EELTEQLEQAKRNKANLEKAKQALE----SENAELQAELRTLQQAKQDSehkRKKLEGQLQELQARLSESERQR-AELA 432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 729 DTLNKLQ-----------EAEIKKEKFastSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKD 797
Cdd:pfam01576 433 EKLSKLQselesvssllnEAEGKNIKL---SKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEE 509
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 798 DREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQS--QQ 875
Cdd:pfam01576 510 EAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLlvDL 589
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 876 QAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLadteDKLKAAQEANRDLMQD 955
Cdd:pfam01576 590 DHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEAL----EAKEELERTNKQLRAE 665
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 956 MEEL-KTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLED----TKQTNARLQNELDTLK---ENNLKTVEELNKSKEL 1027
Cdd:pfam01576 666 MEDLvSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDelqaTEDAKLRLEVNMQALKaqfERDLQARDEQGEEKRR 745
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1028 LSVenQKMEEFKKEIETLKQaaaQKSQQLSALQeenvKLAEELGRTRDEVTSHQKLEEERSvlnNQLLEMKKRESEFRKD 1107
Cdd:pfam01576 746 QLV--KQVRELEAELEDERK---QRAQAVAAKK----KLELDLKELEAQIDAANKGREEAV---KQLKKLQAQMKDLQRE 813
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1108 ADEEKASLQKSISLTSalltEKDAELEKLRNEVTVLRGENATAKSLHSVVQTlESDKVKLELKVKNL-ELQLKENKRQLS 1186
Cdd:pfam01576 814 LEEARASRDEILAQSK----ESEKKLKNLEAELLQLQEDLAASERARRQAQQ-ERDELADEIASGASgKSALQDEKRRLE 888
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907165183 1187 SSSGNTDAQAEE--------DERAQESQQMIDFLNSVIV--------------DLQRKNQDLKMKVEMMSEAA 1237
Cdd:pfam01576 889 ARIAQLEEELEEeqsntellNDRLRKSTLQVEQLTTELAaerstsqksesarqQLERQNKELKAKLQEMEGTV 961
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
335-605 |
1.13e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 1.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 335 LTETSSRYARKISGTTALQEALKEKQQHIEQLlAERDLERAEVAKATSHVGEIEQELALARDGHDQhVLELEAKMDQLRT 414
Cdd:COG4913 622 LEEELAEAEERLEALEAELDALQERREALQRL-AEYSWDEIDVASAEREIAELEAELERLDASSDD-LAALEEQLEELEA 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 415 MVEAADREKVELLNQLEEEKRKVEDLQFRVEEesitkgdleqkspisedpenTQTKLEHA-RTKELEQSLLFEKtkadKL 493
Cdd:COG4913 700 ELEELEEELDELKGEIGRLEKELEQAEEELDE--------------------LQDRLEAAeDLARLELRALLEE----RF 755
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 494 QRELEDTRVATVSEK--SRIMELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSL--LQEISALQEKLEAIH-TDHQGE 568
Cdd:COG4913 756 AAALGDAVERELRENleERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLesLPEYLALLDRLEEDGlPEYEER 835
|
250 260 270
....*....|....*....|....*....|....*....
gi 1907165183 569 MTSLKEHFGARE-EAFQKEIK-ALHTATEKLSKENESLR 605
Cdd:COG4913 836 FKELLNENSIEFvADLLSKLRrAIREIKERIDPLNDSLK 874
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
928-1145 |
1.96e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 1.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 928 LQNLQKMLADTEDKLKAAQEAnRDLMQDMEELKTQADKA---KAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQ 1004
Cdd:COG4913 237 LERAHEALEDAREQIELLEPI-RELAERYAAARERLAELeylRAALRLWFAQRRLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1005 NELDTLKEnnlkTVEELnkSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEenvkLAEELGrtrdevtshQKLE 1084
Cdd:COG4913 316 ARLDALRE----ELDEL--EAQIRGNGGDRLEQLEREIERLERELEERERRRARLEA----LLAALG---------LPLP 376
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907165183 1085 EERSvlnnQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRG 1145
Cdd:COG4913 377 ASAE----EFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
354-816 |
2.11e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.00 E-value: 2.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 354 EALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHvlELEAKMDQLRTMVEAADREKVELLNQLEEE 433
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL--PLYQELEALEAELAELPERLEELEERLEEL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 434 KRKVEDLQFRveeesitkgdleqkspisedpENTQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRvatvsekSRIME 513
Cdd:COG4717 159 RELEEELEEL---------------------EAELAELQEELEELLEQLSLATEEELQDLAEELEELQ-------QRLAE 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 514 LEKDLALRAQEVAELRRRLESSKPPGDVDMSLSLLQEISALQEKLEAIHTdHQGEMTSLKEHFGAREEAFQKEIKALHTA 593
Cdd:COG4717 211 LEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLA-LLGLGGSLLSLILTIAGVLFLVLGLLALL 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 594 TEKLSKENESLRSKLDHANkensdvialwksKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRldyqhei 673
Cdd:COG4717 290 FLLLAREKASLGKEAEELQ------------ALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQ------- 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 674 ESLQSKQDSERSAHAKEMETMQAKLMKiiKEKEDSLEAVKARLDSAEdqhlvEMEDTLNKLQEAEIKKEKFASTSEEAVS 753
Cdd:COG4717 351 ELLREAEELEEELQLEELEQEIAALLA--EAGVEDEEELRAALEQAE-----EYQELKEELEELEEQLEELLGELEELLE 423
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907165183 754 AQTRmQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFK--EKDDREDQLVKAKEKLENDIAE 816
Cdd:COG4717 424 ALDE-EELEEELEELEEELEELEEELEELREELAELEAELEqlEEDGELAELLQELEELKAELRE 487
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
904-1260 |
2.32e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 48.92 E-value: 2.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 904 NQCQDLKAKYEKASSETKTKHEEILQnLQKMLADTEDKLKAAQEANRdlmqdMEELKTQ-ADKAKAAQTAEDAMQIMEQM 982
Cdd:COG5022 831 KLRETEEVEFSLKAEVLIQKFGRSLK-AKKRFSLLKKETIYLQSAQR-----VELAERQlQELKIDVKSISSLKLVNLEL 904
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 983 TKEKTETLASLEDTKQTNARLQNELDT-LKENNLKTVEELNKSKELlsVENQKMEEFKKEIETLKQAAAQKS---QQLSA 1058
Cdd:COG5022 905 ESEIIELKKSLSSDLIENLEFKTELIArLKKLLNNIDLEEGPSIEY--VKLPELNKLHEVESKLKETSEEYEdllKKSTI 982
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1059 LQEENVKLAEELGRTRDEVTSHQKleeERSVLNNQLLEMKKRESE---------FRKDADEEKASLQKSISLTSALLtek 1129
Cdd:COG5022 983 LVREGNKANSELKNFKKELAELSK---QYGALQESTKQLKELPVEvaelqsaskIISSESTELSILKPLQKLKGLLL--- 1056
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1130 dAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKL-ELKVKNLELqlkeNKRQLSSSSGNTDAQAEEDERAQESQQM 1208
Cdd:COG5022 1057 -LENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLkTINVKDLEV----TNRNLVKPANVLQFIVAQMIKLNLLQEI 1131
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 1907165183 1209 IDFLNSVIVDLQRKNQDLKMKVEMMSEAALNGNGEDLNSYDSDDQEKQSKKK 1260
Cdd:COG5022 1132 SKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALSEKRLY 1183
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
966-1202 |
2.80e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 2.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 966 AKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKEnnlktveELNKSKELLSVENQKMEEFKKEIETL 1045
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALER-------RIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1046 KQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSAL 1125
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165183 1126 LTEKDAELEKLRNEVTVLRGENATAKSLH-SVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERA 1202
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERqKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
358-840 |
3.35e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 48.41 E-value: 3.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 358 EKQQHIEQLL-AERDL--ERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEA-ADREKVEllnQLEEE 433
Cdd:COG3096 279 ERRELSERALeLRRELfgARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLNLVQTAlRQQEKIE---RYQED 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 434 krkVEDLQFRVEEES-ITKGDLEQKSPISEDPENTQTKLEHARTK--ELEQSLLFEKTKADKLQ---RELEDTRVATvse 507
Cdd:COG3096 356 ---LEELTERLEEQEeVVEEAAEQLAEAEARLEAAEEEVDSLKSQlaDYQQALDVQQTRAIQYQqavQALEKARALC--- 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 508 ksRIMELEKDLAlrAQEVAELRRRLESskppgdvdmslsLLQEISALQEKL---EAIHTDHQGEMTSLKEHFGA--REEA 582
Cdd:COG3096 430 --GLPDLTPENA--EDYLAAFRAKEQQ------------ATEEVLELEQKLsvaDAARRQFEKAYELVCKIAGEveRSQA 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 583 FQKEIKALHTATEK--LSKENESLRSKLDHANKEnsdvialwkskletaiASHQQAMEELKVSFSKGIGTDsaefaelkt 660
Cdd:COG3096 494 WQTARELLRRYRSQqaLAQRLQQLRAQLAELEQR----------------LRQQQNAERLLEEFCQRIGQQ--------- 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 661 qierlrLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMkiikEKEDSLEAVKARLDSAEDQ--HLVEMEDTLNKLQEAe 738
Cdd:COG3096 549 ------LDAAEELEELLAELEAQLEELEEQAAEAVEQRS----ELRQQLEQLRARIKELAARapAWLAAQDALERLREQ- 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 739 iKKEKFASTSEeaVSAQtrMQDTVNKLHQKEEQfnvlsseleklrenltdmeakfkekddrEDQLVKAKEKLENDIAEIM 818
Cdd:COG3096 618 -SGEALADSQE--VTAA--MQQLLEREREATVE----------------------------RDELAARKQALESQIERLS 664
|
490 500
....*....|....*....|..
gi 1907165183 819 KMSGDNSSQLtkmndeLRLKER 840
Cdd:COG3096 665 QPGGAEDPRL------LALAER 680
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
629-857 |
3.42e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 3.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 629 AIASHQQAMEELKvsfsKGIGTDSAEFAELKTQIERLrldyQHEIESLQsKQDSERSAHAKEMETMQAKLMKIIKEKEDS 708
Cdd:COG4942 21 AAAEAEAELEQLQ----QEIAELEKELAALKKEEKAL----LKQLAALE-RRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 709 LEAVKARLDSAEDQhLVEMEDTLNKLQEAEIKKEKFASTSEEAVSAQTRMQDTVNKlhQKEEQFNVLSSELEKLRENLTD 788
Cdd:COG4942 92 IAELRAELEAQKEE-LAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAP--ARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907165183 789 MEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENAS 857
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
910-1260 |
3.44e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.60 E-value: 3.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 910 KAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKE---K 986
Cdd:PTZ00121 1110 KAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEevrK 1189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 987 TETLASLEDTKQTNARLQNEldtlkenNLKTVEELNKSKELLSVEN-QKMEEFKKEIETLKQAAAQKSQqlsalqEENVK 1065
Cdd:PTZ00121 1190 AEELRKAEDARKAEAARKAE-------EERKAEEARKAEDAKKAEAvKKAEEAKKDAEEAKKAEEERNN------EEIRK 1256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1066 LAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRG 1145
Cdd:PTZ00121 1257 FEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKK 1336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1146 ENATAKSLHSVVQTLESDKVKlelKVKNLELQLKENKRQLSSSSGNTDA---QAEEDERAQESQQMIDFLNSVIVDLQRK 1222
Cdd:PTZ00121 1337 KAEEAKKAAEAAKAEAEAAAD---EAEAAEEKAEAAEKKKEEAKKKADAakkKAEEKKKADEAKKKAEEDKKKADELKKA 1413
|
330 340 350
....*....|....*....|....*....|....*...
gi 1907165183 1223 NQDLKMKVEMMSEAALNGNGEDLNSYDSDDQEKQSKKK 1260
Cdd:PTZ00121 1414 AAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKK 1451
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
937-1139 |
5.28e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 5.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 937 DTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNlK 1016
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASS-D 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1017 TVEELnkskellsvenqkmeefKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLN----N 1092
Cdd:COG4913 686 DLAAL-----------------EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLArlelR 748
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1907165183 1093 QLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNE 1139
Cdd:COG4913 749 ALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1001-1146 |
5.34e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.07 E-value: 5.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1001 ARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRD--EVT 1078
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkEYE 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907165183 1079 SHQK----LEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGE 1146
Cdd:COG1579 93 ALQKeiesLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE 164
|
|
| COG4487 |
COG4487 |
Uncharacterized conserved protein, contains DUF2130 domain [Function unknown]; |
907-1056 |
5.76e-05 |
|
Uncharacterized conserved protein, contains DUF2130 domain [Function unknown];
Pssm-ID: 443580 [Multi-domain] Cd Length: 425 Bit Score: 47.25 E-value: 5.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 907 QDLKAKYEKASSETKTKHEEILQNLQKMLADTEDK--LKAAQEANRDLMQDMEELKTQADKAKAAQTAEdamqiMEQMTK 984
Cdd:COG4487 50 ELAEAKAKAQLQEQVAEKDAEIAELRARLEAEERKkaLAVAEEKEKELAALQEALAEKDAKLAELQAKE-----LELLKK 124
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907165183 985 EKTETLASLEDTKQTNARLQNELDTLKEN-NLKTVEELNKSKELLSVENQK-MEEFKKEIETLKQAAAQKSQQL 1056
Cdd:COG4487 125 ERELEDAKREAELTVEKERDEELDELKEKlKKEEEEKQLAEKSLKVAEYEKqLKDMQEQIEELKRKKEQGSTQL 198
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
580-814 |
6.33e-05 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 47.33 E-value: 6.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 580 EEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDS------- 652
Cdd:pfam05667 253 AEQLRSAALAGTEATSGASRSAQDLAELLSSFSGSSTTDTGLTKGSRFTHTEKLQFTNEAPAATSSPPTKVETeeelqqq 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 653 --AEFAELKTQIERLRLD---YQHEIESLQSK----------QDSERSAHAKEMEtMQAKLMKIIKEKEDSLEAVKARLD 717
Cdd:pfam05667 333 reEELEELQEQLEDLESSiqeLEKEIKKLESSikqveeeleeLKEQNEELEKQYK-VKKKTLDLLPDAEENIAKLQALVD 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 718 SAEdQHLVEMEDTLNKLQEAEIKKEKfastsEEAVSAQTRMQDTVNKLhqkeeqfnvlsSELEKLRENLTDMEAKFKEKD 797
Cdd:pfam05667 412 ASA-QRLVELAGQWEKHRVPLIEEYR-----ALKEAKSNKEDESQRKL-----------EEIKELREKIKEVAEEAKQKE 474
|
250
....*....|....*..
gi 1907165183 798 DREDQLVKAKEKLENDI 814
Cdd:pfam05667 475 ELYKQLVAEYERLPKDV 491
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
425-1184 |
6.67e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.73 E-value: 6.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 425 ELLNQLEEEKRKVED-LQFRVEEESITKGDLEQKSPISEDPENTQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRVA 503
Cdd:TIGR00606 210 KYLKQYKEKACEIRDqITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 504 TVSEK-----------------SRIMELEKDLALRAQEVAEL---RRRLESSKPPGDVDMSLSLLQEiSALQEKLEAIHT 563
Cdd:TIGR00606 290 LKMEKvfqgtdeqlndlyhnhqRTVREKERELVDCQRELEKLnkeRRLLNQEKTELLVEQGRLQLQA-DRHQEHIRARDS 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 564 DHQGEMTSLKEHFGAREEAFQKEIKALHTatekLSKENESLRSKLdhankensdvIALWKSKLETAIASHQQAMEELKVS 643
Cdd:TIGR00606 369 LIQSLATRLELDGFERGPFSERQIKNFHT----LVIERQEDEAKT----------AAQLCADLQSKERLKQEQADEIRDE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 644 FSKGIGTDSAEFAELKTQIERLRldyqHEIESLQSKQDSERSAHAKEMETMQAK----------LMKIIKEKEDSLEAVK 713
Cdd:TIGR00606 435 KKGLGRTIELKKEILEKKQEELK----FVIKELQQLEGSSDRILELDQELRKAErelskaeknsLTETLKKEVKSLQNEK 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 714 ARLDS---AEDQHLVEMEDTLNKLQEAEIKKEKFASTSEEAVSAQTRMQDTV--------------NKLHQKEEQFNVLS 776
Cdd:TIGR00606 511 ADLDRklrKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELtsllgyfpnkkqleDWLHSKSKEINQTR 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 777 SELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKmSGDNSSQLTKMNDELrlkERSVEELQLKLTKANENA 856
Cdd:TIGR00606 591 DRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCG-SQDEESDLERLKEEI---EKSSKQRAMLAGATAVYS 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 857 SFLQKSIGEVT---------LKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEI 927
Cdd:TIGR00606 667 QFITQLTDENQsccpvcqrvFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEI 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 928 LQNLQKMLADTEDklkaAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEktetlasLEDTKQTNARLQNEL 1007
Cdd:TIGR00606 747 PELRNKLQKVNRD----IQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQME-------LKDVERKIAQQAAKL 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1008 DTLkeNNLKTVEELNKSKEllsVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEER 1087
Cdd:TIGR00606 816 QGS--DLDRTVQQVNQEKQ---EKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQL 890
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1088 SVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGE----NATAKSLHSVVQTLESD 1163
Cdd:TIGR00606 891 VELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKvkniHGYMKDIENKIQDGKDD 970
|
810 820
....*....|....*....|..
gi 1907165183 1164 -KVKLELKVKNLELQLKENKRQ 1184
Cdd:TIGR00606 971 yLKQKETELNTVNAQLEECEKH 992
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
578-1260 |
7.32e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.35 E-value: 7.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 578 AREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAE 657
Cdd:TIGR00606 231 AQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNH 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 658 LKT--QIERLRLDYQHEIESLqSKQDSERSAHAKEMETMQAKL-MKIIKEKEDSLEAVKARLDSAEDQHLVEME-DTLNK 733
Cdd:TIGR00606 311 QRTvrEKERELVDCQRELEKL-NKERRLLNQEKTELLVEQGRLqLQADRHQEHIRARDSLIQSLATRLELDGFErGPFSE 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 734 LQEAEIKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLtdmeakfkekDDREDQLVKAKEKLEND 813
Cdd:TIGR00606 390 RQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTI----------ELKKEILEKKQEELKFV 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 814 IAEIMKMSGdNSSQLTKMNDELRLKERsveelqlKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLL 893
Cdd:TIGR00606 460 IKELQQLEG-SSDRILELDQELRKAER-------ELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHT 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 894 ELEKKME-------TSYNQCQDLKAKYEK--------------------ASSETKTKHEEILQNLQKMLADTE------- 939
Cdd:TIGR00606 532 TTRTQMEmltkdkmDKDEQIRKIKSRHSDeltsllgyfpnkkqledwlhSKSKEINQTRDRLAKLNKELASLEqnknhin 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 940 --DKLKAAQEAN-----------RDLMQDMEELKTQADKAK---AAQTAEDAM--QIMEQMTKEKTETLASLEDTKQTNA 1001
Cdd:TIGR00606 612 neLESKEEQLSSyedklfdvcgsQDEESDLERLKEEIEKSSkqrAMLAGATAVysQFITQLTDENQSCCPVCQRVFQTEA 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1002 RLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQ 1081
Cdd:TIGR00606 692 ELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQE 771
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1082 KLEE--------------ERSVLNNQLLEMKKRESEFRKDADEEKAS-LQKSISLTSALLTEKDAELEKLRNEVTVLRG- 1145
Cdd:TIGR00606 772 TLLGtimpeeesakvcltDVTIMERFQMELKDVERKIAQQAAKLQGSdLDRTVQQVNQEKQEKQHELDTVVSKIELNRKl 851
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1146 ---ENATAKSLHSVVQTLESDKVKLELKVKNLElQLKENKRQLSS--SSGNTDAQAEEDERAQESQQMIDFLNSVIVDLQ 1220
Cdd:TIGR00606 852 iqdQQEQIQHLKSKTNELKSEKLQIGTNLQRRQ-QFEEQLVELSTevQSLIREIKDAKEQDSPLETFLEKDQQEKEELIS 930
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 1907165183 1221 RKNQDLK---MKVEMMSEAALN--GNGEDLNSYDSDDQEKQSKKK 1260
Cdd:TIGR00606 931 SKETSNKkaqDKVNDIKEKVKNihGYMKDIENKIQDGKDDYLKQK 975
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
1012-1260 |
7.62e-05 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 46.87 E-value: 7.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1012 ENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSA-LQEENVKLAEELGRTRD---EVTSHQKLEEER 1087
Cdd:COG5185 232 EEALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEKLGENAESSKrLNENANNLIKQFENTKEkiaEYTKSIDIKKAT 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1088 SVLNNQLLEMKKrESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKS---LHSVVQTLESDK 1164
Cdd:COG5185 312 ESLEEQLAAAEA-EQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVELSKSseeLDSFKDTIESTK 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1165 VKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAqesqqmIDFLNSVIVDLQRKNQDL-KMKVEMMSEAALNGNGE 1243
Cdd:COG5185 391 ESLDEIPQNQRGYAQEILATLEDTLKAADRQIEELQRQ------IEQATSSNEEVSKLLNELiSELNKVMREADEESQSR 464
|
250
....*....|....*..
gi 1907165183 1244 DLNSYDSDDQEKQSKKK 1260
Cdd:COG5185 465 LEEAYDEINRSVRSKKE 481
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
748-1136 |
7.72e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 47.26 E-value: 7.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 748 SEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDR-------------EDQLVKAKEKLENDI 814
Cdd:PRK04863 285 LEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHlnlvqtalrqqekIERYQADLEELEERL 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 815 AEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKsigevtlKAEQSQQ--QAARKHEEEKKELEEKL 892
Cdd:PRK04863 365 EEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQT-------RAIQYQQavQALERAKQLCGLPDLTA 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 893 LELEKKMETSYNQCQDLKAKYEKA------SSETKTKHEEILQNLQKMLADTEDklKAAQEANRDLMQDMEELKTQADKA 966
Cdd:PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLeqklsvAQAAHSQFEQAYQLVRKIAGEVSR--SEAWDVARELLRRLREQRHLAEQL 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 967 KAAQTA-----------EDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKennlktvEELNKSKELLSVENQKM 1035
Cdd:PRK04863 516 QQLRMRlseleqrlrqqQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLS-------ESVSEARERRMALRQQL 588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1036 EEFKKEIETLkqaaAQKSQQLSALQEENVKLAEELGrtrDEVTSHQKLEEERSvlnnQLLEMKKRESEFRKDADEEKASL 1115
Cdd:PRK04863 589 EQLQARIQRL----AARAPAWLAAQDALARLREQSG---EEFEDSQDVTEYMQ----QLLERERELTVERDELAARKQAL 657
|
410 420
....*....|....*....|.
gi 1907165183 1116 QKSISLTSALLTEKDAELEKL 1136
Cdd:PRK04863 658 DEEIERLSQPGGSEDPRLNAL 678
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
655-1112 |
7.99e-05 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 47.52 E-value: 7.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 655 FAELKTQIERLRLDYQHEIESLQSKQDsERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSaedqhLVEMEDTLNKL 734
Cdd:PTZ00440 423 LKENSQKIADYALYSNLEIIEIKKKYD-EKINELKKSINQLKTLISIMKSFYDLIISEKDSMDS-----KEKKESSDSNY 496
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 735 QEaeiKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREdqlvKAKEKLENDI 814
Cdd:PTZ00440 497 QE---KVDELLQIINSIKEKNNIVNNNFKNIEDYYITIEGLKNEIEGLIELIKYYLQSIETLIKDE----KLKRSMKNDI 569
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 815 AEIMKMSGDNSSQLTKM---NDELRLKERSVEELqlkltkANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEK 891
Cdd:PTZ00440 570 KNKIKYIEENVDHIKDIislNDEIDNIIQQIEEL------INEALFNKEKFINEKNDLQEKVKYILNKFYKGDLQELLDE 643
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 892 LLELEKKMETSYNQcQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAqeanrdlMQDMEELKTQADKAKAAQT 971
Cdd:PTZ00440 644 LSHFLDDHKYLYHE-AKSKEDLQTLLNTSKNEYEKLEFMKSDNIDNIIKNLKKE-------LQNLLSLKENIIKKQLNNI 715
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 972 AEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQ 1051
Cdd:PTZ00440 716 EQDISNSLNQYTIKYNDLKSSIEEYKEEEEKLEVYKHQIINRKNEFILHLYENDKDLPDGKNTYEEFLQYKDTILNKENK 795
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907165183 1052 KSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEK 1112
Cdd:PTZ00440 796 ISNDINILKENKKNNQDLLNSYNILIQKLEAHTEKNDEELKQLLQKFPTEDENLNLKELEK 856
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
748-1060 |
8.83e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 47.21 E-value: 8.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 748 SEEAVSAQTrmqDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQ 827
Cdd:PRK11281 37 TEADVQAQL---DALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 828 LTKmndelRLKERSVEELQLKLTKANENASFLQKSIGEVT--LKAEQSQQQAARKheeekkeleekllelekKMETSYNQ 905
Cdd:PRK11281 114 TRE-----TLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNsqLVSLQTQPERAQA-----------------ALYANSQR 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 906 CQDLKA--KYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMeeLKTQADKAKAAQTAEDAMQIMEQ-- 981
Cdd:PRK11281 172 LQQIRNllKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDL--LQKQRDYLTARIQRLEHQLQLLQea 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 982 -------MTKEKTETLASLEDT--KQTNARLQNELDT---LKENNLKTVEELNKskelLSVENQKMeefKKEIETLKQAA 1049
Cdd:PRK11281 250 inskrltLSEKTVQEAQSQDEAarIQANPLVAQELEInlqLSQRLLKATEKLNT----LTQQNLRV---KNWLDRLTQSE 322
|
330
....*....|.
gi 1907165183 1050 AQKSQQLSALQ 1060
Cdd:PRK11281 323 RNIKEQISVLK 333
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
903-1079 |
9.42e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.36 E-value: 9.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 903 YNQCQDLKAKYEKASSETKTKHEEIlQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADK------AKAAQTAEDAM 976
Cdd:COG3883 43 QAELEELNEEYNELQAELEALQAEI-DKLQAEIAEAEAEIEERREELGERARALYRSGGSVSYldvllgSESFSDFLDRL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 977 QIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLsveNQKMEEFKKEIETLKQAAAQKSQQL 1056
Cdd:COG3883 122 SALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAEL---EAQQAEQEALLAQLSAEEAAAEAQL 198
|
170 180
....*....|....*....|...
gi 1907165183 1057 SALQEENVKLAEELGRTRDEVTS 1079
Cdd:COG3883 199 AELEAELAAAEAAAAAAAAAAAA 221
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
334-1037 |
1.04e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.96 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 334 LLTETSSRYARKISGTTA-LQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQhvleLEAKMDQL 412
Cdd:TIGR00606 398 LVIERQEDEAKTAAQLCAdLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQ----LEGSSDRI 473
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 413 RTMVEAADREKVELlnQLEEEKRKVEDLQFRVEEESITKGDLEqKSPISEDPENTQTKLEharTKELEQSLLFEKTKADK 492
Cdd:TIGR00606 474 LELDQELRKAEREL--SKAEKNSLTETLKKEVKSLQNEKADLD-RKLRKLDQEMEQLNHH---TTTRTQMEMLTKDKMDK 547
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 493 LQR------ELEDTRVATVSEKSRIMELEKDLALRAQEVAELRRRLesSKPPGDVDMSLSLLQEISALQEKLEAIHTDHQ 566
Cdd:TIGR00606 548 DEQirkiksRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRL--AKLNKELASLEQNKNHINNELESKEEQLSSYE 625
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 567 GEMTSL--KEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKS--KLETAIASHQQAMEELKV 642
Cdd:TIGR00606 626 DKLFDVcgSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRvfQTEAELQEFISDLQSKLR 705
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 643 SFSKGIGTDSAEFAELKTQIERL--RLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAE 720
Cdd:TIGR00606 706 LAPDKLKSTESELKKKEKRRDEMlgLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAK 785
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 721 D--QHLVEMEDTLNKLQEAEIKKEKFASTSEeAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRenltdmeakfKEKDD 798
Cdd:TIGR00606 786 VclTDVTIMERFQMELKDVERKIAQQAAKLQ-GSDLDRTVQQVNQEKQEKQHELDTVVSKIELNR----------KLIQD 854
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 799 REDQLVKAKEKLENDIAEIMKMsGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGevtlKAEQSQQQAA 878
Cdd:TIGR00606 855 QQEQIQHLKSKTNELKSEKLQI-GTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLE----KDQQEKEELI 929
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 879 RKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEE 958
Cdd:TIGR00606 930 SSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDT 1009
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 959 LKTQADKAKAAQTaedaMQIMEQMTKEKTETLAS---------LEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLS 1029
Cdd:TIGR00606 1010 QKIQERWLQDNLT----LRKRENELKEVEEELKQhlkemgqmqVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIK 1085
|
....*...
gi 1907165183 1030 VENQKMEE 1037
Cdd:TIGR00606 1086 HFKKELRE 1093
|
|
| CLIP1_ZNF |
pfam16641 |
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of ... |
1262-1279 |
1.15e-04 |
|
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of the cytoplasmic linker protein CLIP1 (CLIP170). It forms a complex with the CAP-Gly domain of Dynactin.
Pssm-ID: 465212 Cd Length: 17 Bit Score: 40.14 E-value: 1.15e-04
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
736-849 |
1.44e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 46.39 E-value: 1.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 736 EAEIKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDR----EDQLVKAKEKLE 811
Cdd:COG2433 379 EEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERierlERELSEARSEER 458
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1907165183 812 NDI---AEIMKMSGDNsSQLTKmndELRLKERSVEELQLKL 849
Cdd:COG2433 459 REIrkdREISRLDREI-ERLER---ELEEERERIEELKRKL 495
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
589-1247 |
1.53e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 46.58 E-value: 1.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 589 ALHTATEKLSKENESLRSKldHANKENSDVIalwkSKLETAIASHQQAMEELKV-SFSKGIGTDSAEFAE----LKTQIE 663
Cdd:TIGR01612 1048 AIHTSIYNIIDEIEKEIGK--NIELLNKEIL----EEAEINITNFNEIKEKLKHyNFDDFGKEENIKYADeinkIKDDIK 1121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 664 RLRLDYQHEIESLQS-KQDSERsaHAKEMETMQAKLMKI---------IKEKEDSLEAVKARLDSAEDqhlveMEDTLNK 733
Cdd:TIGR01612 1122 NLDQKIDHHIKALEEiKKKSEN--YIDEIKAQINDLEDVadkaisnddPEEIEKKIENIVTKIDKKKN-----IYDEIKK 1194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 734 LQEAEIKKEKFASTSEEAVSAQTRMQDTVNKLHQKEeqfnvLSSELEKLRENLTDMEAKFKEKDD--REDQLVKAKEKLE 811
Cdd:TIGR01612 1195 LLNEIAEIEKDKTSLEEVKGINLSYGKNLGKLFLEK-----IDEEKKKSEHMIKAMEAYIEDLDEikEKSPEIENEMGIE 1269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 812 NDI---AEIMKMSGDNSSQ---LTKMNDElrlKERSVEELQLKLTKANENASflqkSIGEVTlKAEQSQQQAARKHEEEK 885
Cdd:TIGR01612 1270 MDIkaeMETFNISHDDDKDhhiISKKHDE---NISDIREKSLKIIEDFSEES----DINDIK-KELQKNLLDAQKHNSDI 1341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 886 KELEEKllelekkMETSYN--QCQDLKAKYEKASSETKtKHEEILQNLQKMLADTEDKLKAaqeanrdlMQDMEELKTQA 963
Cdd:TIGR01612 1342 NLYLNE-------IANIYNilKLNKIKKIIDEVKEYTK-EIEENNKNIKDELDKSEKLIKK--------IKDDINLEECK 1405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 964 DKAKAAQTAEDAMQIMEQMTKEKTETLA--SLEDTKQTNARLQNELDTLKENNLKTVEelNKSKELLSVE-NQKMEEFKK 1040
Cdd:TIGR01612 1406 SKIESTLDDKDIDECIKKIKELKNHILSeeSNIDTYFKNADENNENVLLLFKNIEMAD--NKSQHILKIKkDNATNDHDF 1483
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1041 EIETLKQAAaQKSQQLSALQEENVKLAEelgrtRDEVTSHQKLEEERSVLNN-QLLEMKKRESEFRKDADE---EKASLQ 1116
Cdd:TIGR01612 1484 NINELKEHI-DKSKGCKDEADKNAKAIE-----KNKELFEQYKKDVTELLNKySALAIKNKFAKTKKDSEIiikEIKDAH 1557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1117 KSISLTSALLTEKDAELEK----LRNEVTVLRGENATAKSLHSVVQTLESDKVKLE----------------------LK 1170
Cdd:TIGR01612 1558 KKFILEAEKSEQKIKEIKKekfrIEDDAAKNDKSNKAAIDIQLSLENFENKFLKISdikkkindclketesiekkissFS 1637
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1171 VKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQQMIDFLNSVI------VDLQRKNQDLKMkVEMMSEAALnGNGED 1244
Cdd:TIGR01612 1638 IDSQDTELKENGDNLNSLQEFLESLKDQKKNIEDKKKELDELDSEIekieidVDQHKKNYEIGI-IEKIKEIAI-ANKEE 1715
|
...
gi 1907165183 1245 LNS 1247
Cdd:TIGR01612 1716 IES 1718
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
714-1231 |
1.65e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 714 ARLDSAEDQhLVEMEDTLNKLQEAEIKKEKFASTSEEAvsAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKF 793
Cdd:COG4913 235 DDLERAHEA-LEDAREQIELLEPIRELAERYAAARERL--AELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAEL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 794 KEKDDREDQLVKAKEKLENDIAEImkmSGDNSSQLtkmndelrlkERSVEELQLKLTKANENASFLQKSIGEVTLKAEQS 873
Cdd:COG4913 312 ERLEARLDALREELDELEAQIRGN---GGDRLEQL----------EREIERLERELEERERRRARLEALLAALGLPLPAS 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 874 QQQAARKHEEEKKELEEKLLELEKKMETSYnqcqDLKAKYEKASSETKTKHEEIL----------QNLQKMLADTEDKLK 943
Cdd:COG4913 379 AEEFAALRAEAAALLEALEEELEALEEALA----EAEAALRDLRRELRELEAEIAslerrksnipARLLALRDALAEALG 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 944 AAQEANR---DLMQDMEE-----------LKTQA-------DKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAR 1002
Cdd:COG4913 455 LDEAELPfvgELIEVRPEeerwrgaiervLGGFAltllvppEHYAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPD 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1003 -LQNELDTlKENNLKT--VEELNKSKELLSVENQkmEEFKKE-------------------------------------- 1041
Cdd:COG4913 535 sLAGKLDF-KPHPFRAwlEAELGRRFDYVCVDSP--EELRRHpraitragqvkgngtrhekddrrrirsryvlgfdnrak 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1042 IETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEersvLNNQLLEMKKRESEFRkDADEEKASLQKSisl 1121
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAE----YSWDEIDVASAEREIA-ELEAELERLDAS--- 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1122 tSALLTEKDAELEKLRNEVTVLRGEnatakslhsvVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEE--D 1199
Cdd:COG4913 684 -SDDLAALEEQLEELEAELEELEEE----------LDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAllE 752
|
570 580 590
....*....|....*....|....*....|....*...
gi 1907165183 1200 ERAQE------SQQMIDFLNSVIVDLQRKNQDLKMKVE 1231
Cdd:COG4913 753 ERFAAalgdavERELRENLEERIDALRARLNRAEEELE 790
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
669-1202 |
1.72e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 46.20 E-value: 1.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 669 YQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKkekfaSTS 748
Cdd:TIGR01612 472 FEEEWGSYDIKKDIDENSKQDNTVKLILMRMKDFKDIIDFMELYKPDEVPSKNIIGFDIDQNIKAKLYKEIE-----AGL 546
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 749 EEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTD------------------MEAKFKEKDDREDQLVKA---K 807
Cdd:TIGR01612 547 KESYELAKNWKKLIHEIKKELEEENEDSIHLEKEIKDLFDkyleiddeiiyinklkleLKEKIKNISDKNEYIKKAidlK 626
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 808 EKLENDIAEIMKMSGDNSSQLTkmnDELRLKERSVEELQLKLTKA---------NENASFLQKSI---GEVTLKAEQSQQ 875
Cdd:TIGR01612 627 KIIENNNAYIDELAKISPYQVP---EHLKNKDKIYSTIKSELSKIyeddidalyNELSSIVKENAidnTEDKAKLDDLKS 703
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 876 QAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASsetktkHEEILQNLQKMLADTEDKLKAAQEANRDLMQD 955
Cdd:TIGR01612 704 KIDKEYDKIQNMETATVELHLSNIENKKNELLDIIVEIKKHI------HGEINKDLNKILEDFKNKEKELSNKINDYAKE 777
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 956 MEELKTQADKAKAAQTA------------EDAMQIMEQmTKEKTETLASLEDtkqTNARLQNELDTLKEnnlktvEELNK 1023
Cdd:TIGR01612 778 KDELNKYKSKISEIKNHyndqinidnikdEDAKQNYDK-SKEYIKTISIKED---EIFKIINEMKFMKD------DFLNK 847
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1024 SKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQ----EENVKLAEELgrtRDEVTshQKLEEERSVLNNQllemkK 1099
Cdd:TIGR01612 848 VDKFINFENNCKEKIDSEHEQFAELTNKIKAEISDDKlndyEKKFNDSKSL---INEIN--KSIEEEYQNINTL-----K 917
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1100 RESEFRKDADEEKASLQKsisltsalLTEKDAEL-EKLRNEVTVLRGENATAKSLHSVVQ-TLESDKVKLELKVKNLELQ 1177
Cdd:TIGR01612 918 KVDEYIKICENTKESIEK--------FHNKQNILkEILNKNIDTIKESNLIEKSYKDKFDnTLIDKINELDKAFKDASLN 989
|
570 580 590
....*....|....*....|....*....|....*...
gi 1907165183 1178 LKEN------------KRQLSSSSGNT-DAQAEEDERA 1202
Cdd:TIGR01612 990 DYEAknnelikyfndlKANLGKNKENMlYHQFDEKEKA 1027
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
351-534 |
2.44e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 2.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 351 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARdghdQHVLELEAKMDQLRTMVEAADREKVELLNQL 430
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA----RRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 431 EEEKRKVEDL---QFRVEEESITKGDLEQKSP------------ISEDPENTQTKLEHART--KELEQSLLFEKTKADKL 493
Cdd:COG4942 100 EAQKEELAELlraLYRLGRQPPLALLLSPEDFldavrrlqylkyLAPARREQAEELRADLAelAALRAELEAERAELEAL 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1907165183 494 QRELEDTRVATVSEKSR----IMELEKDLALRAQEVAELRRRLES 534
Cdd:COG4942 180 LAELEEERAALEALKAErqklLARLEKELAELAAELAELQQEAEE 224
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
356-863 |
2.93e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 45.28 E-value: 2.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 356 LKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREkvelLNQLEEEKR 435
Cdd:PRK01156 254 YESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAE----INKYHAIIK 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 436 KVEDLQfrveeesITKGDLEQKSPISEDPENTQTKLEHARTKEleQSLLFEKTKADKLQRELEDTRVATVSEKSRIMEL- 514
Cdd:PRK01156 330 KLSVLQ-------KDYNDYIKKKSRYDDLNNQILELEGYEMDY--NSYLKSIESLKKKIEEYSKNIERMSAFISEILKIq 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 515 EKDLALRAQEVAELRRRLESSKppGDVDmslSLLQEISALQEKLEAIHTD---------------HQGEMTS--LKEHFG 577
Cdd:PRK01156 401 EIDPDAIKKELNEINVKLQDIS--SKVS---SLNQRIRALRENLDELSRNmemlngqsvcpvcgtTLGEEKSnhIINHYN 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 578 AREEAFQKEIKALHTATEKLSKENESLRSKLDHANKEnsdvialwksKLETAIASHQQaMEELKVSFSKgIGTDSAEFAE 657
Cdd:PRK01156 476 EKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESE----------EINKSINEYNK-IESARADLED-IKIKINELKD 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 658 LKTQIERLRLDYQH-EIESLQSKQDSERSAHAkemetmQAKLMKIikekedslEAVKARLDSAEDQhlveMEDTLNKLQE 736
Cdd:PRK01156 544 KHDKYEEIKNRYKSlKLEDLDSKRTSWLNALA------VISLIDI--------ETNRSRSNEIKKQ----LNDLESRLQE 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 737 AEIKKEKFASTSEEAVSaqtRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLeNDIAE 816
Cdd:PRK01156 606 IEIGFPDDKSYIDKSIR---EIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRI-NDIED 681
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 1907165183 817 IMKMSgdnSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSI 863
Cdd:PRK01156 682 NLKKS---RKALDDAKANRARLESTIEILRTRINELSDRINDINETL 725
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
652-1170 |
3.18e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 45.12 E-value: 3.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 652 SAEFAELKTQIERLRLDY-QHEIESLQSKQDSERSAHA------KEMETMQAKLMKIIKEKEDSLEAVKARLDSAE-DQH 723
Cdd:pfam05557 1 RAELIESKARLSQLQNEKkQMELEHKRARIELEKKASAlkrqldRESDRNQELQKRIRLLEKREAEAEEALREQAElNRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 724 LVEMEDTLNKLQEAeiKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQL 803
Cdd:pfam05557 81 KKKYLEALNKKLNE--KESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 804 VKAKEKLENDIAEIMKMSGDNSSQ------LTKMNDELRlkerSVEELQLKLTKANENASFLQKSIGEVTL--------- 868
Cdd:pfam05557 159 EKQQSSLAEAEQRIKELEFEIQSQeqdseiVKNSKSELA----RIPELEKELERLREHNKHLNENIENKLLlkeevedlk 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 869 ----KAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYN--------------QCQDLKAKYEKASSETKTKHEEILQ- 929
Cdd:pfam05557 235 rkleREEKYREEAATLELEKEKLEQELQSWVKLAQDTGLNlrspedlsrrieqlQQREIVLKEENSSLTSSARQLEKARr 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 930 -------NLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTkqtnar 1002
Cdd:pfam05557 315 eleqelaQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELTMSNYSPQLLERIEEAEDM------ 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1003 lqneLDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEElgrtrdevtsHQK 1082
Cdd:pfam05557 389 ----TQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADPSYSKEEVDSLRRKLE----------TLE 454
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1083 LEEERSVLNNQLLEMKKRESEFRKDADEEKAS-LQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLE 1161
Cdd:pfam05557 455 LERQRLREQKNELEMELERRCLQGDYDPKKTKvLHLSMNPAAEAYQQRKNQLEKLQAEIERLKRLLKKLEDDLEQVLRLP 534
|
....*....
gi 1907165183 1162 SDKVKLELK 1170
Cdd:pfam05557 535 ETTSTMNFK 543
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
461-688 |
3.24e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 3.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 461 SEDPENTQTKLE--HARTKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPP 538
Cdd:COG4942 19 ADAAAEAEAELEqlQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 539 -----GDVDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANK 613
Cdd:COG4942 99 leaqkEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907165183 614 ENSDVIALwKSKLETAIASHQQAMEELKVSFSKgigtDSAEFAELKTQIERLrldyQHEIESLQSKQDSERSAHA 688
Cdd:COG4942 179 LLAELEEE-RAALEALKAERQKLLARLEKELAE----LAAELAELQQEAEEL----EALIARLEAEAAAAAERTP 244
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
493-742 |
3.41e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.01 E-value: 3.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 493 LQRELEDTRVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPPGDVDMslsLLQEISALQEKLEAIhtdhQGEMTSL 572
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKL---LLQQLSELESQLAEA----RAELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 573 KehfgAREEAFQKEIKALHTATEKLSkeneslrskldhankeNSDVIAlwksKLETAIASHQQAMEELKVSFskgiGTDS 652
Cdd:COG3206 239 E----ARLAALRAQLGSGPDALPELL----------------QSPVIQ----QLRAQLAELEAELAELSARY----TPNH 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 653 AEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKL------MKIIKEKEDSLEAVKARLDSAEDQHlve 726
Cdd:COG3206 291 PDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLaqlearLAELPELEAELRRLEREVEVARELY--- 367
|
250
....*....|....*.
gi 1907165183 727 mEDTLNKLQEAEIKKE 742
Cdd:COG3206 368 -ESLLQRLEEARLAEA 382
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
352-640 |
4.09e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 4.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 352 LQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALardgHDQHVLELEAKMDQLRTMVEAADREKVELLNQLE 431
Cdd:TIGR02168 773 AEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL----LNEEAANLRERLESLERRIAATERRLEDLEEQIE 848
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 432 EEKRKVEDLQFRVEEEsitkgdleqkspiSEDPENTQTKLEHA--RTKELEQSLLFEKTKADKLQRELEDTRvatvsekS 509
Cdd:TIGR02168 849 ELSEDIESLAAEIEEL-------------EELIEELESELEALlnERASLEEALALLRSELEELSEELRELE-------S 908
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 510 RIMELEKDLALRAQEVAELRRRLEsskppgdvdmslSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKA 589
Cdd:TIGR02168 909 KRSELRRELEELREKLAQLELRLE------------GLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKR 976
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165183 590 LHTATEKLSKEN-------ESLRSKLDHANKENSDvialwkskLETAIASHQQAMEEL 640
Cdd:TIGR02168 977 LENKIKELGPVNlaaieeyEELKERYDFLTAQKED--------LTEAKETLEEAIEEI 1026
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
775-1245 |
4.13e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.71 E-value: 4.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 775 LSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMN----------DELRLKERSVEE 844
Cdd:pfam05483 101 LKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNllketcarsaEKTKKYEYEREE 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 845 LQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETK--- 921
Cdd:pfam05483 181 TRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKdlt 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 922 ---TKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTA-EDAMQI----MEQMTKEKTETLASL 993
Cdd:pfam05483 261 fllEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKAlEEDLQIatktICQLTEEKEAQMEEL 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 994 EDTKQTNARLQNELDTlkennlkTVEELnksKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRT 1073
Cdd:pfam05483 341 NKAKAAHSFVVTEFEA-------TTCSL---EELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEEL 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1074 RDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSL 1153
Cdd:pfam05483 411 KKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIEL 490
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1154 HSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQ-QMIDFLNSVIVDLQRKNQDLKMKVEM 1232
Cdd:pfam05483 491 TAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEmNLRDELESVREEFIQKGDEVKCKLDK 570
|
490
....*....|...
gi 1907165183 1233 MSEAALNGNGEDL 1245
Cdd:pfam05483 571 SEENARSIEYEVL 583
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
355-498 |
5.16e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.46 E-value: 5.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 355 ALKEKQQHIEQLLAE---RDLERAEVAKATS-----------HVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAAD 420
Cdd:COG2433 347 AYKNKFERVEKKVPPdvdRDEVKARVIRGLSieealeeliekELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLE 426
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165183 421 REKVELLNQLEEEKRKVEDLQFRVEEESItkgdlEQKSPISEDPEntQTKLEhARTKELEQSLLFEKTKADKLQRELE 498
Cdd:COG2433 427 AEVEELEAELEEKDERIERLERELSEARS-----EERREIRKDRE--ISRLD-REIERLERELEEERERIEELKRKLE 496
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
939-1111 |
5.81e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.00 E-value: 5.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 939 EDKLKAAQEANRDLMQD----MEELKtqadKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENN 1014
Cdd:PRK12704 30 EAKIKEAEEEAKRILEEakkeAEAIK----KEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1015 LKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKlAEELGRTRDEvtshqkLEEERSVLnnql 1094
Cdd:PRK12704 106 EKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAK-EILLEKVEEE------ARHEAAVL---- 174
|
170
....*....|....*..
gi 1907165183 1095 leMKKRESEFRKDADEE 1111
Cdd:PRK12704 175 --IKEIEEEAKEEADKK 189
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
332-672 |
7.07e-04 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 43.52 E-value: 7.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 332 TGLLTETSSRYARKISGTTALQEALKEKQQHIEQLlaerdleRAEVAKATSHVGEIEQELALARD-----GHDQHVLELE 406
Cdd:pfam19220 75 TRRLSAAEGELEELVARLAKLEAALREAEAAKEEL-------RIELRDKTAQAEALERQLAAETEqnralEEENKALREE 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 407 AK-MDQLRTMVEAADREKVELLNQLEEEKRKvedLQFRVEEESITKGDLEQKSPISEdpenTQTKLEHARTKELEQSLLF 485
Cdd:pfam19220 148 AQaAEKALQRAEGELATARERLALLEQENRR---LQALSEEQAAELAELTRRLAELE----TQLDATRARLRALEGQLAA 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 486 EKTKADKLQRELEDTRVATVSEKS----RIMELEKDLALRAQEVAELRRRLesskppgdvdmslsllQEISALQEKLEAI 561
Cdd:pfam19220 221 EQAERERAEAQLEEAVEAHRAERAslrmKLEALTARAAATEQLLAEARNQL----------------RDRDEAIRAAERR 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 562 HTDHQGEMTSLKehfgAREEAFQKEIKALHTATeklsKENESLRSKLDHANKENSDVIALWKSKLETA---IASHQQAME 638
Cdd:pfam19220 285 LKEASIERDTLE----RRLAGLEADLERRTQQF----QEMQRARAELEERAEMLTKALAAKDAALERAeerIASLSDRIA 356
|
330 340 350
....*....|....*....|....*....|....
gi 1907165183 639 ELKVSFSKgigtdsaEFAELKTQIERLRLDYQHE 672
Cdd:pfam19220 357 ELTKRFEV-------ERAALEQANRRLKEELQRE 383
|
|
| CCCAP |
pfam15964 |
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ... |
921-1174 |
7.26e-04 |
|
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.
Pssm-ID: 435040 [Multi-domain] Cd Length: 703 Bit Score: 44.13 E-value: 7.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 921 KTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQiMEQMTKEKTETLASLEDTKQTN 1000
Cdd:pfam15964 362 KSELERQKERLEKELASQQEKRAQEKEALRKEMKKEREELGATMLALSQNVAQLEAQ-VEKVTREKNSLVSQLEEAQKQL 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1001 ARLQNELDT--------LKENNLKTVEELNKSKEL-------LSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVK 1065
Cdd:pfam15964 441 ASQEMDVTKvcgemryqLNQTKMKKDEAEKEHREYrtktgrqLEIKDQEIEKLGLELSESKQRLEQAQQDAARAREECLK 520
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1066 LAEELGRTRDEV--TSHQKLEEERSVLNN---QLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEV 1140
Cdd:pfam15964 521 LTELLGESEHQLhlTRLEKESIQQSFSNEakaQALQAQQREQELTQKMQQMEAQHDKTVNEQYSLLTSQNTFIAKLKEEC 600
|
250 260 270
....*....|....*....|....*....|....
gi 1907165183 1141 TVLrgenatAKSLHSVVQTLESDKVKLELKVKNL 1174
Cdd:pfam15964 601 CTL------AKKLEEITQKSRSEVEQLSQEKEYL 628
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
907-1260 |
7.37e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 44.04 E-value: 7.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 907 QDLKAKYEKASSETKTKheeilqNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAkaaqtaedamqimeqmTKEK 986
Cdd:pfam10174 213 EELHRRNQLQPDPAKTK------ALQTVIEMKDTKISSLERNIRDLEDEVQMLKTNGLLH----------------TEDR 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 987 TETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKL 1066
Cdd:pfam10174 271 EEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDAL 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1067 A---EELGRTRDEVTSH-QKLEEERSVLNNQLLEMKKresefRKDADEEKAS-LQKSISLTSALLTEKDAELEKLRNEvt 1141
Cdd:pfam10174 351 RlrlEEKESFLNKKTKQlQDLTEEKSTLAGEIRDLKD-----MLDVKERKINvLQKKIENLQEQLRDKDKQLAGLKER-- 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1142 vlrgenatakslhsvVQTLESDKVKLELKVKNLELQLKENKRQLssssgntdaQAEEDERAQESQQMIDFLNsvivDLQR 1221
Cdd:pfam10174 424 ---------------VKSLQTDSSNTDTALTTLEEALSEKERII---------ERLKEQREREDRERLEELE----SLKK 475
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1907165183 1222 KNQDLKMKVEMM------SEAALNGNGEDLNSYDSDDQEKQSKKK 1260
Cdd:pfam10174 476 ENKDLKEKVSALqpelteKESSLIDLKEHASSLASSGLKKDSKLK 520
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
351-880 |
7.78e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 7.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 351 ALQEALKEKQQHIEqllAERDLERAEVAKATSHVGEIEQELALAR---DGHDQHVLELEAKMDQLRTMVEAADREKVELL 427
Cdd:COG4913 253 LLEPIRELAERYAA---ARERLAELEYLRAALRLWFAQRRLELLEaelEELRAELARLEAELERLEARLDALREELDELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 428 NQLEEEK-RKVEDLQFRVEEESITKGDLEQKspiSEDPENTQTKLEHARTKELEQsllFEKTKA------DKLQRELEDT 500
Cdd:COG4913 330 AQIRGNGgDRLEQLEREIERLERELEERERR---RARLEALLAALGLPLPASAEE---FAALRAeaaallEALEEELEAL 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 501 RVATVSEKSRIMELEKDLALRAQEVAELRRRlESSKPPGDVDMSLSLLQEISALQEKLEAIhtdhqGEMTSLKEhfgaRE 580
Cdd:COG4913 404 EEALAEAEAALRDLRRELRELEAEIASLERR-KSNIPARLLALRDALAEALGLDEAELPFV-----GELIEVRP----EE 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 581 EAFQKEI-KALHT--------------ATEKLskENESLRSKLDhankenSDVIALWKSKLETAIASHQQAMEELKVSfs 645
Cdd:COG4913 474 ERWRGAIeRVLGGfaltllvppehyaaALRWV--NRLHLRGRLV------YERVRTGLPDPERPRLDPDSLAGKLDFK-- 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 646 kgigtDSAEFAELKTQIERlRLDYQ--HEIESL-----------QSKQDSERSAHAKEMETMQ------------AKLMK 700
Cdd:COG4913 544 -----PHPFRAWLEAELGR-RFDYVcvDSPEELrrhpraitragQVKGNGTRHEKDDRRRIRSryvlgfdnraklAALEA 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 701 IIKEKEDSLEAVKARLDSAEDQHlvemeDTLNKLQEAEIKKEKFASTSEEAVSAQTRMQDtvnkLHQKEEQFNVLSSELE 780
Cdd:COG4913 618 ELAELEEELAEAEERLEALEAEL-----DALQERREALQRLAEYSWDEIDVASAEREIAE----LEAELERLDASSDDLA 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 781 KLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQ 860
Cdd:COG4913 689 ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELR 768
|
570 580
....*....|....*....|
gi 1907165183 861 KSIGEVTLKAEQSQQQAARK 880
Cdd:COG4913 769 ENLEERIDALRARLNRAEEE 788
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
347-614 |
7.79e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 7.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 347 SGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELAlardghdqhvlELEAKMDQLRTMVEAADREKVEL 426
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA-----------ALERRIAALARRIRALEQELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 427 LNQLEEEKRKVEDLQFRVEeesitkgdlEQKSPISEDPENTQTKLEHARTKeleqsLLFEKTKADKLQRELEDTRVATVS 506
Cdd:COG4942 82 EAELAELEKEIAELRAELE---------AQKEELAELLRALYRLGRQPPLA-----LLLSPEDFLDAVRRLQYLKYLAPA 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 507 EKSRIMELEKDLalraQEVAELRRRLESSKppgdvDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKehfgAREEAFQKE 586
Cdd:COG4942 148 RREQAEELRADL----AELAALRAELEAER-----AELEALLAELEEERAALEALKAERQKLLARLE----KELAELAAE 214
|
250 260
....*....|....*....|....*...
gi 1907165183 587 IKALHTATEKLSKENESLRSKLDHANKE 614
Cdd:COG4942 215 LAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
352-1185 |
7.86e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.88 E-value: 7.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 352 LQEALKEKQQHIEQLLAERDlERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLE 431
Cdd:TIGR00606 211 YLKQYKEKACEIRDQITSKE-AQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 432 EEKRKV--------EDLQFRVEEESITKGDLEQKSPISEDPENTQTKLEHARTKELEQSLLFEKTKADKLQ-----RELE 498
Cdd:TIGR00606 290 LKMEKVfqgtdeqlNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQehiraRDSL 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 499 DTRVATVSEKSRiMELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSLLQEISALQEKLEAIHTDHQGEMTSL---KEH 575
Cdd:TIGR00606 370 IQSLATRLELDG-FERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIelkKEI 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 576 FGAREEAFQKEIKALHTAT---EKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDS 652
Cdd:TIGR00606 449 LEKKQEELKFVIKELQQLEgssDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLN 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 653 AEFAELKT--QIERLRLDYQHEIESLQSKQDSERSAHA------KEMETMQAKLMKIIKEKEDSLEAVKARLDSAE-DQH 723
Cdd:TIGR00606 529 HHTTTRTQmeMLTKDKMDKDEQIRKIKSRHSDELTSLLgyfpnkKQLEDWLHSKSKEINQTRDRLAKLNKELASLEqNKN 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 724 LVEMEDTLNKLQEAEIKKEKFASTSEEAVsaQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQL 803
Cdd:TIGR00606 609 HINNELESKEEQLSSYEDKLFDVCGSQDE--ESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRV 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 804 VKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEE 883
Cdd:TIGR00606 687 FQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKND 766
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 884 EKKELEEKLLELEKkmETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMlaDTEDKLKAAQEANRDLMQDMEELKTQA 963
Cdd:TIGR00606 767 IEEQETLLGTIMPE--EESAKVCLTDVTIMERFQMELKDVERKIAQQAAKL--QGSDLDRTVQQVNQEKQEKQHELDTVV 842
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 964 DKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIE 1043
Cdd:TIGR00606 843 SKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQ 922
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1044 TlkqaaaQKSQQLSALQEENVKLAEELGRTRDEVtshqkleeersvlNNQLLEMKKRESEFRKDADEEKASLQKSISLTS 1123
Cdd:TIGR00606 923 Q------EKEELISSKETSNKKAQDKVNDIKEKV-------------KNIHGYMKDIENKIQDGKDDYLKQKETELNTVN 983
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907165183 1124 ALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTlESDKVKLELKVKNLELQLKENKRQL 1185
Cdd:TIGR00606 984 AQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQD-NLTLRKRENELKEVEEELKQHLKEM 1044
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
546-845 |
9.82e-04 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 42.99 E-value: 9.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 546 SLLQEISALQEKLEAIHTDHQGEMTSLKEHFgareeafQKEIKALHTATEKLSKENESLRSKLDHANKENSDVialwKSK 625
Cdd:pfam00038 22 FLEQQNKLLETKISELRQKKGAEPSRLYSLY-------EKEIEDLRRQLDTLTVERARLQLELDNLRLAAEDF----RQK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 626 LETAIAsHQQAMEelkvsfskgigtdsAEFAELKTQIERL---RLDYQHEIESLQSKQDSERSAHAKEMETMQAKLmkii 702
Cdd:pfam00038 91 YEDELN-LRTSAE--------------NDLVGLRKDLDEAtlaRVDLEAKIESLKEELAFLKKNHEEEVRELQAQV---- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 703 kekedSLEAVKARLDSAE----DQHLVEMED------TLNKLQEAEIKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQF 772
Cdd:pfam00038 152 -----SDTQVNVEMDAARkldlTSALAEIRAqyeeiaAKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTI 226
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907165183 773 NVLSSELEKLRenltdmeakfKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEEL 845
Cdd:pfam00038 227 QSLEIELQSLK----------KQKASLERQLAETEERYELQLADYQELISELEAELQETRQEMARQLREYQEL 289
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
671-1263 |
1.04e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.67 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 671 HEIESLQSKQDSERSAHAKeMETMQAKLMKIIKEKEDSLEAVKARLdSAEDQHLVEMEDTLNKLQeAEIKKEKFASTSE- 749
Cdd:pfam12128 241 PEFTKLQQEFNTLESAELR-LSHLHFGYKSDETLIASRQEERQETS-AELNQLLRTLDDQWKEKR-DELNGELSAADAAv 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 750 -------EAVSAQTR--MQDTVNKLHQKEEQFNVLSSELEKLRENLT-------DMEAKF-----KEKDDREDQLVKAKE 808
Cdd:pfam12128 318 akdrselEALEDQHGafLDADIETAAADQEQLPSWQSELENLEERLKaltgkhqDVTAKYnrrrsKIKEQNNRDIAGIKD 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 809 KLENDIAEIMKMSGDNSSQLTKMNDELRlkersvEELQLKLTKANENASFLQKSIGEvtLKAEQSQQQAarkheeekkel 888
Cdd:pfam12128 398 KLAKIREARDRQLAVAEDDLQALESELR------EQLEAGKLEFNEEEYRLKSRLGE--LKLRLNQATA----------- 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 889 eekLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQnLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAka 968
Cdd:pfam12128 459 ---TPELLLQLENFDERIERAREEQEAANAEVERLQSELRQ-ARKRRDQASEALRQASRRLEERQSALDELELQLFPQ-- 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 969 AQTAEDAMQIMEQMTKEKTETLASLEDTKQTNarLQNELDTLKENNLKTVEELNkskelLSVENQKMEEFKKEIETLKQA 1048
Cdd:pfam12128 533 AGTLLHFLRKEAPDWEQSIGKVISPELLHRTD--LDPEVWDGSVGGELNLYGVK-----LDLKRIDVPEWAASEEELRER 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1049 AAQKSQQLSALQEENVKLAEELGRTRDEVTSHQK-LEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLT 1127
Cdd:pfam12128 606 LDKAEEALQSAREKQAAAEEQLVQANGELEKASReETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLN 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1128 EKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKnlELQLKENKRQLSSSSGNTDAQAEEDERAQESQQ 1207
Cdd:pfam12128 686 SLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQ--LALLKAAIAARRSGAKAELKALETWYKRDLASL 763
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 1907165183 1208 MIDflNSVIVDLQRKNQDLKMKVEMMSeaalnGNGEDLNSYDSDDQEKQSKKKPRL 1263
Cdd:pfam12128 764 GVD--PDVIAKLKREIRTLERKIERIA-----VRRQEVLRYFDWYQETWLQRRPRL 812
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
928-1105 |
1.34e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 928 LQNLQKMLADTEDKLKAAQEANR---------DLMQDMEELKTQADKAKAA-QTAEDAMQIMEQMTKEKTETLASLEDT- 996
Cdd:COG3206 184 LPELRKELEEAEAALEEFRQKNGlvdlseeakLLLQQLSELESQLAEARAElAEAEARLAALRAQLGSGPDALPELLQSp 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 997 ---------KQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLA 1067
Cdd:COG3206 264 viqqlraqlAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARL 343
|
170 180 190
....*....|....*....|....*....|....*...
gi 1907165183 1068 EELGRTRDEVtshQKLEEERSVLNNQLLEMKKRESEFR 1105
Cdd:COG3206 344 AELPELEAEL---RRLEREVEVARELYESLLQRLEEAR 378
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
960-1249 |
1.47e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.58 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 960 KTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFK 1039
Cdd:COG4372 21 KTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQ 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1040 KEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVlnnqllEMKKRESEFRKDADEEKASLQKSI 1119
Cdd:COG4372 101 EELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREE------ELKELEEQLESLQEELAALEQELQ 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1120 SLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEED 1199
Cdd:COG4372 175 ALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEE 254
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1200 ERAQESQQMIDFLNSVIVDLQRKNQDLKMKVEMMSEAALNGNGEDLNSYD 1249
Cdd:COG4372 255 VILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNL 304
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
798-1050 |
1.90e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 798 DREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQA 877
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 878 ARKheeekkeleekllelekkmetsynqcQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDME 957
Cdd:COG4942 100 EAQ--------------------------KEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 958 ELK-TQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKME 1036
Cdd:COG4942 154 ELRaDLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
250
....*....|....
gi 1907165183 1037 EFKKEIETLKQAAA 1050
Cdd:COG4942 234 AEAAAAAERTPAAG 247
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
345-610 |
1.91e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.80 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 345 KISGTTALQEALKEKQQHIEQLLAER-------DLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLrtmve 417
Cdd:pfam15921 556 QMAEKDKVIEILRQQIENMTQLVGQHgrtagamQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDL----- 630
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 418 aaDREKVELLNQLEEEKRKVEDL-QFRVEEESITKGDLEQKSPISEDPENTQTKLEHaRTKELEQSLLFEKTKADKLQRE 496
Cdd:pfam15921 631 --ELEKVKLVNAGSERLRAVKDIkQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRN-KSEEMETTTNKLKMQLKSAQSE 707
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 497 LEDTRVATVSEKSR-------IMELEKDLALRAQEVAELRRR---LESSKPPGDVDMSLsLLQEISALQEKLEAIHTDhQ 566
Cdd:pfam15921 708 LEQTRNTLKSMEGSdghamkvAMGMQKQITAKRGQIDALQSKiqfLEEAMTNANKEKHF-LKEEKNKLSQELSTVATE-K 785
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1907165183 567 GEMTSLKEHFGAREEAFQKEIKALHTATEKLS------------KENESLRSKLDH 610
Cdd:pfam15921 786 NKMAGELEVLRSQERRLKEKVANMEVALDKASlqfaecqdiiqrQEQESVRLKLQH 841
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
784-1161 |
1.91e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 784 ENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEImkmsgdnssqltkmnDELRLKERSVEELQLKLTKANENASFLQK-S 862
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEEL---------------EELEAELEELREELEKLEKLLQLLPLYQElE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 863 IGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKL 942
Cdd:COG4717 136 ALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEEL 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 943 KAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQI--------------------------------------MEQMTK 984
Cdd:COG4717 216 EEAQEELEELEEELEQLENELEAAALEERLKEARLLlliaaallallglggsllsliltiagvlflvlgllallFLLLAR 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 985 EKTETLASLEDTKQTNAR-------LQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQlS 1057
Cdd:COG4717 296 EKASLGKEAEELQALPALeeleeeeLEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIA-A 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1058 ALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEkaSLQKSISLTSALLTEKDAELEKLR 1137
Cdd:COG4717 375 LLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEE--ELEEELEELEEELEELEEELEELR 452
|
410 420
....*....|....*....|....
gi 1907165183 1138 NEVTVLRGENATAKSLHSVVQTLE 1161
Cdd:COG4717 453 EELAELEAELEQLEEDGELAELLQ 476
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
508-985 |
2.15e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 508 KSRIMElekdlALRAQEVAELRRRLES-SKPPGDVDmsLSLLQEISALQEKLEAIhtdhqgemtslkehfGAREEAFQKE 586
Cdd:COG4717 36 KSTLLA-----FIRAMLLERLEKEADElFKPQGRKP--ELNLKELKELEEELKEA---------------EEKEEEYAEL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 587 IKALHTATEKLsKENESLRSKLDHANKENSDVIALW-----KSKLETAIASHQQAMEELKVSFskgigtdsAEFAELKTQ 661
Cdd:COG4717 94 QEELEELEEEL-EELEAELEELREELEKLEKLLQLLplyqeLEALEAELAELPERLEELEERL--------EELRELEEE 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 662 IERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKI---IKEKEDSLEAVKARLDSAEDQhLVEMEDTLNKLQEAE 738
Cdd:COG4717 165 LEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELqqrLAELEEELEEAQEELEELEEE-LEQLENELEAAALEE 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 739 -IKKEKFASTSEEAVSAQTRMQDTVNKLHQKEE------------QFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVK 805
Cdd:COG4717 244 rLKEARLLLLIAAALLALLGLGGSLLSLILTIAgvlflvlgllalLFLLLAREKASLGKEAEELQALPALEELEEEELEE 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 806 AKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQ---KSIGEVTLKAEQSQQQAARKHE 882
Cdd:COG4717 324 LLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEagvEDEEELRAALEQAEEYQELKEE 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 883 EEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEiLQNLQKMLADTEDKLKAAQEANR--DLMQDMEELK 960
Cdd:COG4717 404 LEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEE-LEELREELAELEAELEQLEEDGElaELLQELEELK 482
|
490 500
....*....|....*....|....*.
gi 1907165183 961 TQ-ADKAKAAQTAEDAMQIMEQMTKE 985
Cdd:COG4717 483 AElRELAEEWAALKLALELLEEAREE 508
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
837-1070 |
2.20e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.59 E-value: 2.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 837 LKERSVEELQLKLTKAN-ENASFLQKSIGEVTLKAEQSQQQAARkheeekkeleeklleLEKKMETSYNQCQDLKAKYEK 915
Cdd:PRK11281 48 LNKQKLLEAEDKLVQQDlEQTLALLDKIDRQKEETEQLKQQLAQ---------------APAKLRQAQAELEALKDDNDE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 916 ASSETKTKHEeiLQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAedAMQIMEQMTKEKTETLASLED 995
Cdd:PRK11281 113 ETRETLSTLS--LRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYA--NSQRLQQIRNLLKGGKVGGKA 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 996 TKQT-----NARL-----QNELD-TLKENNLKTVEELNKSKELLSVENQKMEEF----------KKEIETLKQAAAQKSQ 1054
Cdd:PRK11281 189 LRPSqrvllQAEQallnaQNDLQrKSLEGNTQLQDLLQKQRDYLTARIQRLEHQlqllqeainsKRLTLSEKTVQEAQSQ 268
|
250
....*....|....*.
gi 1907165183 1055 QLSALQEENVKLAEEL 1070
Cdd:PRK11281 269 DEAARIQANPLVAQEL 284
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
356-536 |
2.29e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.42 E-value: 2.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 356 LKEKQQHIEQLLAE---------RDLERAEVAKATSHvGEIEQELALAR------DGHDQHVLELEAKMDQLRTMVEAAD 420
Cdd:pfam17380 355 QEERKRELERIRQEeiameisrmRELERLQMERQQKN-ERVRQELEAARkvkileEERQRKIQQQKVEMEQIRAEQEEAR 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 421 REKVELLNqlEEEKRKVEdlqfRVEEESITKgdlEQKSPISEDPENTQTKLEHARTKELEQSLLFEKTKADKLQRELEDT 500
Cdd:pfam17380 434 QREVRRLE--EERAREME----RVRLEEQER---QQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEER 504
|
170 180 190
....*....|....*....|....*....|....*.
gi 1907165183 501 RVATVSEKSRIMELEKDLALRAQEVAELRRRLESSK 536
Cdd:pfam17380 505 KQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEE 540
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
904-1226 |
2.35e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 904 NQCQDLKAKYEKASSETKTKhEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKaaqtaedamQIMEQMT 983
Cdd:TIGR04523 33 TEEKQLEKKLKTIKNELKNK-EKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNK---------DKINKLN 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 984 KEKTETLASLEDTKQTNARLQNELDTLK-------ENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQL 1056
Cdd:TIGR04523 103 SDLSKINSEIKNDKEQKNKLEVELNKLEkqkkenkKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEK 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1057 SALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSA-------LLTEK 1129
Cdd:TIGR04523 183 LNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNtqtqlnqLKDEQ 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1130 DAELEKLRNEVTVLRGENATAKSLHSVVQTLESD-----KVKLELKVKNLELQLKENKRQLSsssgntdaqaEEDERAQE 1204
Cdd:TIGR04523 263 NKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEisdlnNQKEQDWNKELKSELKNQEKKLE----------EIQNQISQ 332
|
330 340
....*....|....*....|..
gi 1907165183 1205 SQQMIDFLNSVIVDLQRKNQDL 1226
Cdd:TIGR04523 333 NNKIISQLNEQISQLKKELTNS 354
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
491-812 |
2.52e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 41.98 E-value: 2.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 491 DKLQRELEDTRVATVSEKSRIMELEKDLALRAQEVAELRR-----RLESSKPPGDVDMSLSLLQEISALQEKLEAIHTDH 565
Cdd:pfam19220 30 SQLIEPIEAILRELPQAKSRLLELEALLAQERAAYGKLRRelaglTRRLSAAEGELEELVARLAKLEAALREAEAAKEEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 566 QGEMTSLKehfgAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKensdviALWKSKLETAIASHQQAM-EELKVSF 644
Cdd:pfam19220 110 RIELRDKT----AQAEALERQLAAETEQNRALEEENKALREEAQAAEK------ALQRAEGELATARERLALlEQENRRL 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 645 SKGIGTDSAEFAELK---TQIERLRLDYQHEIESLQSKQDSERSAHAK-------EMETMQAKLMKIIKEkedsLEAVKA 714
Cdd:pfam19220 180 QALSEEQAAELAELTrrlAELETQLDATRARLRALEGQLAAEQAERERaeaqleeAVEAHRAERASLRMK----LEALTA 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 715 RLDSAEdQHLVEMEDTLNKLQEAEIKKE-KFASTSEEAVSAQTRMQDTVNKLHQKEEQFNvlssELEKLRENLTD-MEAK 792
Cdd:pfam19220 256 RAAATE-QLLAEARNQLRDRDEAIRAAErRLKEASIERDTLERRLAGLEADLERRTQQFQ----EMQRARAELEErAEML 330
|
330 340
....*....|....*....|
gi 1907165183 793 FKEKDDREDQLVKAKEKLEN 812
Cdd:pfam19220 331 TKALAAKDAALERAEERIAS 350
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
623-812 |
2.81e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.12 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 623 KSKLETAIASHQQAMEELKvsfskgigTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMEtmqaklmKII 702
Cdd:PRK00409 515 KEKLNELIASLEELERELE--------QKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQ-------QAI 579
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 703 KEKEDSLEAVKARLdsaedQHLVEMEDTLNKLQEAEIKKEKFASTSEEAVSAQT---RMQDTVN--------KLHQKEEq 771
Cdd:PRK00409 580 KEAKKEADEIIKEL-----RQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKkqkEKQEELKvgdevkylSLGQKGE- 653
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1907165183 772 fnVLS----SELE------KLRENLTDMEAKFKEKDDREDQLVKAKEKLEN 812
Cdd:PRK00409 654 --VLSipddKEAIvqagimKMKVPLSDLEKIQKPKKKKKKKPKTVKPKPRT 702
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
985-1207 |
3.88e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 3.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 985 EKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQK----SQQLSALQ 1060
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERreelGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1061 E--------ENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAE 1132
Cdd:COG3883 97 RsggsvsylDVLLGSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQ 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907165183 1133 LEKLRNEVTVLRGENATAKSLhsvVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQQ 1207
Cdd:COG3883 177 QAEQEALLAQLSAEEAAAEAQ---LAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAG 248
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
706-964 |
3.98e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 3.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 706 EDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKKEKFASTseeavsaqtrmqdtvNKLHQKEEQFNVLSSELEKLREN 785
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQK---------------NGLVDLSEEAKLLLQQLSELESQ 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 786 LTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMkmsgdNSSQLTKMNDELRLKERSVEELQLKLTKANEnasflqksige 865
Cdd:COG3206 228 LAEARAELAEAEARLAALRAQLGSGPDALPELL-----QSPVIQQLRAQLAELEAELAELSARYTPNHP----------- 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 866 vTLKAEQSQQQAARKheEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTkheeiLQNLQKMLADTEDKLKAA 945
Cdd:COG3206 292 -DVIALRAQIAALRA--QLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAE-----LPELEAELRRLEREVEVA 363
|
250
....*....|....*....
gi 1907165183 946 QEANRDLMQDMEELKTQAD 964
Cdd:COG3206 364 RELYESLLQRLEEARLAEA 382
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
365-1013 |
4.93e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.36 E-value: 4.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 365 QLLAERDLERAEVAKAtshvgEIEQELALARDGHDQHVLELEAKMDQLRTMVeAADREKVELLnqlEEEKRKVEDLqfRV 444
Cdd:pfam12128 271 ETLIASRQEERQETSA-----ELNQLLRTLDDQWKEKRDELNGELSAADAAV-AKDRSELEAL---EDQHGAFLDA--DI 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 445 EEesiTKGDLEQKSPISEDPENTQTKLEHARTKELEQSLLFEKTKADKLQR------ELEDTRVATVSEKSRIMELEKDl 518
Cdd:pfam12128 340 ET---AAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQnnrdiaGIKDKLAKIREARDRQLAVAED- 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 519 ALRAQEvAELRRRLESSKppgdVDMSLSLLQEISALQE-KLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKL 597
Cdd:pfam12128 416 DLQALE-SELREQLEAGK----LEFNEEEYRLKSRLGElKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERL 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 598 SKENESLRSKLDHANKENSDVialwksklETAIASHQQAMEELKVSFskgigtdsaeFAELKTQIERLRLDYQHEIESLQ 677
Cdd:pfam12128 491 QSELRQARKRRDQASEALRQA--------SRRLEERQSALDELELQL----------FPQAGTLLHFLRKEAPDWEQSIG 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 678 SKQDSE---RSAHAKEMETMQAKlmkiikeKEDSLEAVKARLDSAEDQHLVEMEDTLNklqeaeikkekfastsEEAVSA 754
Cdd:pfam12128 553 KVISPEllhRTDLDPEVWDGSVG-------GELNLYGVKLDLKRIDVPEWAASEEELR----------------ERLDKA 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 755 QTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKE----KLENDIAEIMKMSGDNSSQLTK 830
Cdd:pfam12128 610 EEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQsekdKKNKALAERKDSANERLNSLEA 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 831 MNDELRLKERSVEELQ--LKLTKANENASFLQKSIG----------------EVTLKAEQSQQQAARKHEEEKK----EL 888
Cdd:pfam12128 690 QLKQLDKKHQAWLEEQkeQKREARTEKQAYWQVVEGaldaqlallkaaiaarRSGAKAELKALETWYKRDLASLgvdpDV 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 889 EEKLLELEKKMETSYNQCQDLKAK------------------YEKASSETKTKHEEILQNLQKMLADTEDKLKAAQ---E 947
Cdd:pfam12128 770 IAKLKREIRTLERKIERIAVRRQEvlryfdwyqetwlqrrprLATQLSNIERAISELQQQLARLIADTKLRRAKLEmerK 849
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165183 948 ANRDLMQDMEELKTQAD--KAKAAQTAEDAMQimEQMTKEKTETLASLEDTKQTNARLQNELDTLKEN 1013
Cdd:pfam12128 850 ASEKQQVRLSENLRGLRceMSKLATLKEDANS--EQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEH 915
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
705-1103 |
5.20e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.22 E-value: 5.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 705 KEDSLEAVKARLDSAEDQHLVEMEDTLNKLQE-AEIKKEKFASTSEEAVSAQTRMQDTVNKLHQKEeqfnvlsSELEKLR 783
Cdd:COG5022 898 KLVNLELESEIIELKKSLSSDLIENLEFKTELiARLKKLLNNIDLEEGPSIEYVKLPELNKLHEVE-------SKLKETS 970
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 784 ENLTDMeakFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSqLTKMNDELRLKERSVEELQLKLTKANENASFL---- 859
Cdd:COG5022 971 EEYEDL---LKKSTILVREGNKANSELKNFKKELAELSKQYGA-LQESTKQLKELPVEVAELQSASKIISSESTELsilk 1046
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 860 --QKSIGEVTLKAEQSQQQAarKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLqkmlad 937
Cdd:COG5022 1047 plQKLKGLLLLENNQLQARY--KALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFI------ 1118
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 938 tedklkAAQEANRDLMQDMEELKTQadkakAAQTAEDAMQIME--QMTKEKTETLASLEDTKQTNARLQNELDTLKENNL 1015
Cdd:COG5022 1119 ------VAQMIKLNLLQEISKFLSQ-----LVNTLEPVFQKLSvlQLELDGLFWEANLEALPSPPPFAALSEKRLYQSAL 1187
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1016 KTVEELNKSKELLSVENQKMEEFKKEIETL-KQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKL--EEERSVLN- 1091
Cdd:COG5022 1188 YDEKSKLSSSEVNDLKNELIALFSKIFSGWpRGDKLKKLISEGWVPTEYSTSLKGFNNLNKKFDTPASMsnEKLLSLLNs 1267
|
410
....*....|...
gi 1907165183 1092 -NQLLEMKKRESE 1103
Cdd:COG5022 1268 iDNLLSSYKLEEE 1280
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
950-1127 |
5.25e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 40.85 E-value: 5.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 950 RDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLS 1029
Cdd:PRK12705 29 QRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1030 VENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKlAEELGRTRDEvtshqkLEEERSVLNNQLLEMKKRESEfRKDAD 1109
Cdd:PRK12705 109 EREKALSARELELEELEKQLDNELYRVAGLTPEQAR-KLLLKLLDAE------LEEEKAQRVKKIEEEADLEAE-RKAQN 180
|
170
....*....|....*...
gi 1907165183 1110 EEKASLQKSISLTSALLT 1127
Cdd:PRK12705 181 ILAQAMQRIASETASDLS 198
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1021-1226 |
5.41e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 5.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1021 LNKSKELLSVENQKMEEF-KKEIETLKQAAAQKSQQLSALQEEN--VKLAEELGRTRDEVTShqkLEEERSVLNNQLLEM 1097
Cdd:COG3206 162 LEQNLELRREEARKALEFlEEQLPELRKELEEAEAALEEFRQKNglVDLSEEAKLLLQQLSE---LESQLAEARAELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1098 KKRESEFRKDADEEKASLqkSISLTSALLTEKDAELEKLRNEVTVLRgenATAKSLHSvvqtlesdkvklelKVKNLELQ 1177
Cdd:COG3206 239 EARLAALRAQLGSGPDAL--PELLQSPVIQQLRAQLAELEAELAELS---ARYTPNHP--------------DVIALRAQ 299
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1907165183 1178 LKENKRQLSSSSGNTDAQAEEDERAQESQqmIDFLNSVIVDLQRKNQDL 1226
Cdd:COG3206 300 IAALRAQLQQEAQRILASLEAELEALQAR--EASLQAQLAQLEARLAEL 346
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
734-1075 |
5.81e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.65 E-value: 5.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 734 LQEAEIKKEKFASTSEEAVSAQTRMQDTVNKLhqkEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLend 813
Cdd:pfam07888 47 LQAQEAANRQREKEKERYKRDREQWERQRREL---ESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDAL--- 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 814 iaeiMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQqqaarkheeekkeleekll 893
Cdd:pfam07888 121 ----LAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQ------------------- 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 894 eleKKMETSYNQCQDLKAKYEKASSETKTKHEEILQnLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAE 973
Cdd:pfam07888 178 ---AKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQ-LQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKV 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 974 DAMqimeqmtKEKTETLASLEDTKQTN---ARLQNELDTLK--ENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQA 1048
Cdd:pfam07888 254 EGL-------GEELSSMAAQRDRTQAElhqARLQAAQLTLQlaDASLALREGRARWAQERETLQQSAEADKDRIEKLSAE 326
|
330 340
....*....|....*....|....*..
gi 1907165183 1049 AAQKSQQLSALQEENVKLAEELGRTRD 1075
Cdd:pfam07888 327 LQRLEERLQEERMEREKLEVELGREKD 353
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
928-1090 |
5.88e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 5.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 928 LQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQT-AEDAMQIMEQMTKEKTETLASLEDTKQTNArLQNE 1006
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKrLELEIEEVEARIKKYEEQLGNVRNNKEYEA-LQKE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1007 LDTLKennlKTVEELNksKELLSVENQKmEEFKKEIETLKQAAAQKSQQLSALQEEnvkLAEELGRTRDEVtshQKLEEE 1086
Cdd:COG1579 98 IESLK----RRISDLE--DEILELMERI-EELEEELAELEAELAELEAELEEKKAE---LDEELAELEAEL---EELEAE 164
|
....
gi 1907165183 1087 RSVL 1090
Cdd:COG1579 165 REEL 168
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
410-599 |
6.47e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 6.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 410 DQLRTMVEAADREKVELLNQLEEEKRKVEDLQ-----FRVEEESITKGdlEQKSPISEDPENTQTKLEHARTKELEqsll 484
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEaaleeFRQKNGLVDLS--EEAKLLLQQLSELESQLAEARAELAE---- 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 485 fEKTKADKLQRELEDTR--VATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPpgDVdmsLSLLQEISALQEKLEAIH 562
Cdd:COG3206 238 -AEARLAALRAQLGSGPdaLPELLQSPVIQQLRAQLAELEAELAELSARYTPNHP--DV---IALRAQIAALRAQLQQEA 311
|
170 180 190
....*....|....*....|....*....|....*..
gi 1907165183 563 TDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSK 599
Cdd:COG3206 312 QRILASLEAELEALQAREASLQAQLAQLEARLAELPE 348
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
435-1180 |
6.59e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.93 E-value: 6.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 435 RKVEDLQFRVEEESITKGDLEQKSPISEDPENTQTKLEHartkelEQSLLFEKTKAD-KLQRELEDTRVATVSEKSRIME 513
Cdd:pfam01576 2 RQEEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCE------EKNALQEQLQAEtELCAEAEEMRARLAARKQELEE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 514 LEKDLALRAQEVAELRRRLESSKPpgdvdmslSLLQEISALQEKLEAIHTDHQgEMTSLKEHFGAREEAFQKEIKALHTA 593
Cdd:pfam01576 76 ILHELESRLEEEEERSQQLQNEKK--------KMQQHIQDLEEQLDEEEAARQ-KLQLEKVTTEAKIKKLEEDILLLEDQ 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 594 TEKLSKENESLRSKL----DHANKENSDVIALWKSKLEtaiasHQQAMEELKVSFSKGIGTdSAEFAELKTQIERLRLDY 669
Cdd:pfam01576 147 NSKLSKERKLLEERIseftSNLAEEEEKAKSLSKLKNK-----HEAMISDLEERLKKEEKG-RQELEKAKRKLEGESTDL 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 670 QHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKArldsaedqhLVEMEDTLNKLQEaEIKKEKFASTse 749
Cdd:pfam01576 221 QEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKK---------IRELEAQISELQE-DLESERAARN-- 288
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 750 eavsaqtrmqdtvnklhQKEEQFNVLSSELEKLRENLTD----MEAKFKEKDDREDQLVKAKEKLENDI----AEIMKMS 821
Cdd:pfam01576 289 -----------------KAEKQRRDLGEELEALKTELEDtldtTAAQQELRSKREQEVTELKKALEEETrsheAQLQEMR 351
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 822 GDNSSQLTKMNDELRLKER---SVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAarkheeekkelEEKLLELEKK 898
Cdd:pfam01576 352 QKHTQALEELTEQLEQAKRnkaNLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKL-----------EGQLQELQAR 420
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 899 METSYNQCQDLKAKYEKASSEtktkheeiLQNLQKMLADTEDK-LKAAQEANR--DLMQDMEELKTQADKAKAA------ 969
Cdd:pfam01576 421 LSESERQRAELAEKLSKLQSE--------LESVSSLLNEAEGKnIKLSKDVSSleSQLQDTQELLQEETRQKLNlstrlr 492
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 970 QTAEDAMQIMEQMtKEKTETLASLEDTKQTnarLQNELDTLKennlKTVEELNKSKELLSVENQKMeefKKEIETLKQAA 1049
Cdd:pfam01576 493 QLEDERNSLQEQL-EEEEEAKRNVERQLST---LQAQLSDMK----KKLEEDAGTLEALEEGKKRL---QRELEALTQQL 561
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1050 AQKSQQLSALQEENVKLAEEL-------GRTRDEVTSHQK--------LEEERSVLNNQLLEMKKRESEFRkdadeEKAS 1114
Cdd:pfam01576 562 EEKAAAYDKLEKTKNRLQQELddllvdlDHQRQLVSNLEKkqkkfdqmLAEEKAISARYAEERDRAEAEAR-----EKET 636
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907165183 1115 lqKSISLTSALLTEKDA--ELEK----LRNEVTVL-RGENATAKSLHSvvqtLESDKVKLELKVKNLELQLKE 1180
Cdd:pfam01576 637 --RALSLARALEEALEAkeELERtnkqLRAEMEDLvSSKDDVGKNVHE----LERSKRALEQQVEEMKTQLEE 703
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
984-1140 |
6.79e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 6.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 984 KEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKeietlKQAAAQKSQQLSALQEEN 1063
Cdd:COG1579 24 HRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEE-----QLGNVRNNKEYEALQKEI 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907165183 1064 VKLAEELGRTRDEVtshQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEV 1140
Cdd:COG1579 99 ESLKRRISDLEDEI---LELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKI 172
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
765-1118 |
6.79e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.11 E-value: 6.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 765 LHQKEEQFNVLSSELEKLR--ENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQ-----LTKMNDELRL 837
Cdd:TIGR00618 158 LKAKSKEKKELLMNLFPLDqyTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQvlekeLKHLREALQQ 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 838 KERSVEELQLKLTKANEnASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKAS 917
Cdd:TIGR00618 238 TQQSHAYLTQKREAQEE-QLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTEL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 918 SETKTKHEEILQNLQKMLADTEDkLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTK 997
Cdd:TIGR00618 317 QSKMRSRAKLLMKRAAHVKQQSS-IEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKL 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 998 QTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSA----LQEENVKLAEELGRT 1073
Cdd:TIGR00618 396 QSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLekihLQESAQSLKEREQQL 475
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1907165183 1074 RDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKS 1118
Cdd:TIGR00618 476 QTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDI 520
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
918-1057 |
7.26e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.33 E-value: 7.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 918 SETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELK-----TQADKAKAAQTAEDAMQIMEQMTKEKTETLAS 992
Cdd:PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRaslsaAEAERSRLQALLAELAGAGAAAEGRAGELAQE 124
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907165183 993 LEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQ----AAAQKSQQLS 1057
Cdd:PRK09039 125 LDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRrlnvALAQRVQELN 193
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
925-1089 |
8.36e-03 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 40.37 E-value: 8.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 925 EEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKA----KAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTN 1000
Cdd:pfam05262 188 EDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDAdkaqQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTS 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1001 ARLQNEldTLKENNLKTVEELNK-----SKELLSVENQKMEEFKKEIETLKQAAAQKSQQlsaLQEENVKLAEELGRTRD 1075
Cdd:pfam05262 268 SPKEDK--QVAENQKREIEKAQIeikknDEEALKAKDHKAFDLKQESKASEKEAEDKELE---AQKKREPVAEDLQKTKP 342
|
170
....*....|....
gi 1907165183 1076 EVTSHQKLEEERSV 1089
Cdd:pfam05262 343 QVEAQPTSLNEDAI 356
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
619-1108 |
9.39e-03 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 40.40 E-value: 9.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 619 IALWKSKLETAIASHQQAMEELkvsfskgiGTDSAEFAELKTQIERLrldyqhEIESLQSKQDSERSA-HAKEMETMQAk 697
Cdd:pfam05701 51 IPEYKKQSEAAEAAKAQVLEEL--------ESTKRLIEELKLNLERA------QTEEAQAKQDSELAKlRVEEMEQGIA- 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 698 lmkiikekEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSS 777
Cdd:pfam05701 116 --------DEASVAAKAQLEVAKARHAAAVAELKSVKEELESLRKEYASLVSERDIAIKRAEEAVSASKEIEKTVEELTI 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 778 ELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDnssQLTKMNDELRlkerSVEELQLKLTKANENAS 857
Cdd:pfam05701 188 ELIATKESLESAHAAHLEAEEHRIGAALAREQDKLNWEKELKQAEE---ELQRLNQQLL----SAKDLKSKLETASALLL 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 858 FLQKSIG---EVTLKAEQSQQQAARKheeekkeleeKLLELEKKMETSYNQCQDLKAKYEKASSETKTKH---------- 924
Cdd:pfam05701 261 DLKAELAaymESKLKEEADGEGNEKK----------TSTSIQAALASAKKELEEVKANIEKAKDEVNCLRvaaaslrsel 330
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 925 ------------------------EEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAqtaedAMQIME 980
Cdd:pfam05701 331 ekekaelaslrqregmasiavsslEAELNRTKSEIALVQAKEKEAREKMVELPKQLQQAAQEAEEAKSL-----AQAARE 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 981 QMTKEKtetlaslEDTKQTNARLQNeLDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSAlq 1060
Cdd:pfam05701 406 ELRKAK-------EEAEQAKAAAST-VESRLEAVLKEIEAAKASEKLALAAIKALQESESSAESTNQEDSPRGVTLSL-- 475
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 1907165183 1061 EENVKL------AEELGRTR-DEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDA 1108
Cdd:pfam05701 476 EEYYELskraheAEELANKRvAEAVSQIEEAKESELRSLEKLEEVNREMEERKEA 530
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
941-1260 |
9.43e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 40.22 E-value: 9.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 941 KLKAAQEANRDLMQDMEELKTQADKAKaaqtaEDAMQIMEQMTKEKTETLASLEDTKQTNA----RLQNELDTLKENNLK 1016
Cdd:PLN03229 423 KREAVKTPVRELEGEVEKLKEQILKAK-----ESSSKPSELALNEMIEKLKKEIDLEYTEAviamGLQERLENLREEFSK 497
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1017 TVEELNKSKELLSVENQK-MEEFKKEI------ETLKQA-----AAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLE 1084
Cdd:PLN03229 498 ANSQDQLMHPVLMEKIEKlKDEFNKRLsrapnyLSLKYKldmlnEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIK 577
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1085 EERSVLNNQLLEMK-KRESEFRKDADEEKASLQKSISLTSA-LLTEKDAELEKLRNEvTVLRGENATAKSLHSVVQTLES 1162
Cdd:PLN03229 578 EKMEALKAEVASSGaSSGDELDDDLKEKVEKMKKEIELELAgVLKSMGLEVIGVTKK-NKDTAEQTPPPNLQEKIESLNE 656
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165183 1163 D---KVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQES---QQMIDFLNSviVDLQRKNQDLKMKVEMMSEA 1236
Cdd:PLN03229 657 EinkKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQqikQKIAEALNS--SELKEKFEELEAELAAARET 734
|
330 340
....*....|....*....|....
gi 1907165183 1237 ALNGNGEDLNSYDSDDQEKQSKKK 1260
Cdd:PLN03229 735 AAESNGSLKNDDDKEEDSKEDGSR 758
|
|
| |
