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Conserved domains on  [gi|1907069125|ref|XP_036021293|]
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opticin isoform X1 [Mus musculus]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 11469232)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

Gene Ontology:  GO:0005515
SCOP:  4003523

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
226-362 1.10e-14

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 74.97  E-value: 1.10e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907069125 226 DLENIPPLPQMT--TYLYARFNHISHIQAgDFKGLTKLRRIDLSGNSISSIhNDALRLLPALQDLILPENQLAALPV--- 300
Cdd:COG4886   102 DLSGNEELSNLTnlESLDLSGNQLTDLPE-ELANLTNLKELDLSNNQLTDL-PEPLGNLTNLKSLDLSNNQLTDLPEelg 179
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907069125 301 -LPSgIEFLDVRLNRLQSsgiQPEAFVALKKLQFLYLANNMLDSIPGPLPL--SLRSLHL---QVSSL 362
Cdd:COG4886   180 nLTN-LKELDLSNNQITD---LPEPLGNLTNLEELDLSGNQLTDLPEPLANltNLETLDLsnnQLTDL 243
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
226-362 1.10e-14

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 74.97  E-value: 1.10e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907069125 226 DLENIPPLPQMT--TYLYARFNHISHIQAgDFKGLTKLRRIDLSGNSISSIhNDALRLLPALQDLILPENQLAALPV--- 300
Cdd:COG4886   102 DLSGNEELSNLTnlESLDLSGNQLTDLPE-ELANLTNLKELDLSNNQLTDL-PEPLGNLTNLKSLDLSNNQLTDLPEelg 179
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907069125 301 -LPSgIEFLDVRLNRLQSsgiQPEAFVALKKLQFLYLANNMLDSIPGPLPL--SLRSLHL---QVSSL 362
Cdd:COG4886   180 nLTN-LKELDLSNNQITD---LPEPLGNLTNLEELDLSGNQLTDLPEPLANltNLETLDLsnnQLTDL 243
LRR_8 pfam13855
Leucine rich repeat;
238-295 6.65e-11

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 57.53  E-value: 6.65e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1907069125 238 TYLYARFNHISHIQAGDFKGLTKLRRIDLSGNSISSIHNDALRLLPALQDLILPENQL 295
Cdd:pfam13855   4 RSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
221-373 7.00e-10

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 58.64  E-value: 7.00e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907069125 221 YCDDADLENIPPLPQMT--TYLYARFNHISHIQagDFKGLTKLRRIDLSGNSISSIHNdaLRLLPALQDLILpENQlaal 298
Cdd:cd21340    30 YLYDNKITKIENLEFLTnlTHLYLQNNQIEKIE--NLENLVNLKKLYLGGNRISVVEG--LENLTNLEELHI-ENQ---- 100
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907069125 299 pVLPSG--IEF--------------LDVRLNRLQSsgiqPEAFVALKKLQFLYLANNMLDSIPGPLPL-----SLRSLHL 357
Cdd:cd21340   101 -RLPPGekLTFdprslaalsnslrvLNISGNNIDS----LEPLAPLRNLEQLDASNNQISDLEELLDLlsswpSLRELDL 175
                         170
                  ....*....|....*....
gi 1907069125 358 Q---VSSLNQTKDKNIVCA 373
Cdd:cd21340   176 TgnpVCKKPKYRDKIILAS 194
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
137-364 1.38e-05

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 47.38  E-value: 1.38e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907069125 137 IEDYNEVIDL-----SNYEELAdygdqipeAKISNLTLPTRTSPtSTVAQKTLSPNLTMAVPTTtgllnsqsshgLPTCL 211
Cdd:PRK15370  205 ILDNNELKSLpenlqGNIKTLY--------ANSNQLTSIPATLP-DTIQEMELSINRITELPER-----------LPSAL 264
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907069125 212 VCVclgsSVYCDDadLENIPP-LPQMTTYLYARFNHISHIQAGDFKGLTKLrridlsgnsisSIHNDALRLLPA-----L 285
Cdd:PRK15370  265 QSL----DLFHNK--ISCLPEnLPEELRYLSVYDNSIRTLPAHLPSGITHL-----------NVQSNSLTALPEtlppgL 327
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907069125 286 QDLILPENQLAALPV-LPSGIEFLDVRLNRLQssgIQPEAFVAlkKLQFLYLANNMLDSIPGPLPLSLRSLHlqvSSLNQ 364
Cdd:PRK15370  328 KTLEAGENALTSLPAsLPPELQVLDVSKNQIT---VLPETLPP--TITTLDVSRNALTNLPENLPAALQIMQ---ASRNN 399
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
226-362 1.10e-14

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 74.97  E-value: 1.10e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907069125 226 DLENIPPLPQMT--TYLYARFNHISHIQAgDFKGLTKLRRIDLSGNSISSIhNDALRLLPALQDLILPENQLAALPV--- 300
Cdd:COG4886   102 DLSGNEELSNLTnlESLDLSGNQLTDLPE-ELANLTNLKELDLSNNQLTDL-PEPLGNLTNLKSLDLSNNQLTDLPEelg 179
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907069125 301 -LPSgIEFLDVRLNRLQSsgiQPEAFVALKKLQFLYLANNMLDSIPGPLPL--SLRSLHL---QVSSL 362
Cdd:COG4886   180 nLTN-LKELDLSNNQITD---LPEPLGNLTNLEELDLSGNQLTDLPEPLANltNLETLDLsnnQLTDL 243
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
218-362 1.19e-14

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 74.97  E-value: 1.19e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907069125 218 SSVYCDDADLENIPP-LPQMT--TYLYARFNHISHIQAgDFKGLTKLRRIDLSGNSISSIhNDALRLLPALQDLILPENQ 294
Cdd:COG4886   116 ESLDLSGNQLTDLPEeLANLTnlKELDLSNNQLTDLPE-PLGNLTNLKSLDLSNNQLTDL-PEELGNLTNLKELDLSNNQ 193
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907069125 295 LAALPV----LPSgIEFLDVRLNRLQSsgiQPEAFVALKKLQFLYLANNMLDSIP--GPLPlSLRSLHL---QVSSL 362
Cdd:COG4886   194 ITDLPEplgnLTN-LEELDLSGNQLTD---LPEPLANLTNLETLDLSNNQLTDLPelGNLT-NLEELDLsnnQLTDL 265
LRR_8 pfam13855
Leucine rich repeat;
238-295 6.65e-11

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 57.53  E-value: 6.65e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1907069125 238 TYLYARFNHISHIQAGDFKGLTKLRRIDLSGNSISSIHNDALRLLPALQDLILPENQL 295
Cdd:pfam13855   4 RSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
221-373 7.00e-10

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 58.64  E-value: 7.00e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907069125 221 YCDDADLENIPPLPQMT--TYLYARFNHISHIQagDFKGLTKLRRIDLSGNSISSIHNdaLRLLPALQDLILpENQlaal 298
Cdd:cd21340    30 YLYDNKITKIENLEFLTnlTHLYLQNNQIEKIE--NLENLVNLKKLYLGGNRISVVEG--LENLTNLEELHI-ENQ---- 100
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907069125 299 pVLPSG--IEF--------------LDVRLNRLQSsgiqPEAFVALKKLQFLYLANNMLDSIPGPLPL-----SLRSLHL 357
Cdd:cd21340   101 -RLPPGekLTFdprslaalsnslrvLNISGNNIDS----LEPLAPLRNLEQLDASNNQISDLEELLDLlsswpSLRELDL 175
                         170
                  ....*....|....*....
gi 1907069125 358 Q---VSSLNQTKDKNIVCA 373
Cdd:cd21340   176 TgnpVCKKPKYRDKIILAS 194
LRR_8 pfam13855
Leucine rich repeat;
259-341 3.22e-07

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 46.75  E-value: 3.22e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907069125 259 TKLRRIDLSGNSISSIHNDALRLLPALQDLILPENQLaalpvlpsgiefldvrlnrlqsSGIQPEAFVALKKLQFLYLAN 338
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLL----------------------TTLSPGAFSGLPSLRYLDLSG 58

                  ...
gi 1907069125 339 NML 341
Cdd:pfam13855  59 NRL 61
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
219-358 9.42e-06

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 47.24  E-value: 9.42e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907069125 219 SVYCDDADLENIPPLPQMT--TYLYARFNHISHIqaGDFKGLTKLRRIDLSGNSISSIHNDALRLLPALQDLILPENQLA 296
Cdd:COG4886   232 TLDLSNNQLTDLPELGNLTnlEELDLSNNQLTDL--PPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLN 309
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907069125 297 ALPVLPSGIEFLDVRLNRLQSSGIQPEAFVALKKLQFLYLANNMLDSIPGPLPLSLRSLHLQ 358
Cdd:COG4886   310 LLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGL 371
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
137-364 1.38e-05

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 47.38  E-value: 1.38e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907069125 137 IEDYNEVIDL-----SNYEELAdygdqipeAKISNLTLPTRTSPtSTVAQKTLSPNLTMAVPTTtgllnsqsshgLPTCL 211
Cdd:PRK15370  205 ILDNNELKSLpenlqGNIKTLY--------ANSNQLTSIPATLP-DTIQEMELSINRITELPER-----------LPSAL 264
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907069125 212 VCVclgsSVYCDDadLENIPP-LPQMTTYLYARFNHISHIQAGDFKGLTKLrridlsgnsisSIHNDALRLLPA-----L 285
Cdd:PRK15370  265 QSL----DLFHNK--ISCLPEnLPEELRYLSVYDNSIRTLPAHLPSGITHL-----------NVQSNSLTALPEtlppgL 327
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907069125 286 QDLILPENQLAALPV-LPSGIEFLDVRLNRLQssgIQPEAFVAlkKLQFLYLANNMLDSIPGPLPLSLRSLHlqvSSLNQ 364
Cdd:PRK15370  328 KTLEAGENALTSLPAsLPPELQVLDVSKNQIT---VLPETLPP--TITTLDVSRNALTNLPENLPAALQIMQ---ASRNN 399
PRK15387 PRK15387
type III secretion system effector E3 ubiquitin transferase SspH2;
224-356 2.61e-05

type III secretion system effector E3 ubiquitin transferase SspH2;


Pssm-ID: 185285 [Multi-domain]  Cd Length: 788  Bit Score: 46.31  E-value: 2.61e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907069125 224 DADLENIPPLPQMTTYLYARFNHISHIQAGDfkglTKLRRIDLSGNSISSihndaLRLLPA-LQDLILPENQLAALPVLP 302
Cdd:PRK15387  351 DNQLASLPTLPSELYKLWAYNNRLTSLPALP----SGLKELIVSGNRLTS-----LPVLPSeLKELMVSGNRLTSLPMLP 421
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1907069125 303 SGIEFLDVRLNRLQSsgiQPEAFVALKKLQFLYLANNmldsipgplPLSLRSLH 356
Cdd:PRK15387  422 SGLLSLSVYRNQLTR---LPESLIHLSSETTVNLEGN---------PLSERTLQ 463
PRK15387 PRK15387
type III secretion system effector E3 ubiquitin transferase SspH2;
224-328 3.54e-05

type III secretion system effector E3 ubiquitin transferase SspH2;


Pssm-ID: 185285 [Multi-domain]  Cd Length: 788  Bit Score: 45.92  E-value: 3.54e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907069125 224 DADLENIPPLPQMTTYLYARFNHISHIQAGDfkglTKLRRIDLSGNSISSI------------HNDALRLLPAL----QD 287
Cdd:PRK15387  311 DNQLASLPALPSELCKLWAYNNQLTSLPTLP----SGLQELSVSDNQLASLptlpselyklwaYNNRLTSLPALpsglKE 386
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1907069125 288 LILPENQLAALPVLPSGIEFLDVRLNRLQSSGIQPEAFVAL 328
Cdd:PRK15387  387 LIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSL 427
LRR_8 pfam13855
Leucine rich repeat;
308-358 1.26e-04

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 39.43  E-value: 1.26e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1907069125 308 LDVRLNRLQSsgIQPEAFVALKKLQFLYLANNMLDSIPG----PLPlSLRSLHLQ 358
Cdd:pfam13855   6 LDLSNNRLTS--LDDGAFKGLSNLKVLDLSNNLLTTLSPgafsGLP-SLRYLDLS 57
PRK15387 PRK15387
type III secretion system effector E3 ubiquitin transferase SspH2;
227-355 1.45e-04

type III secretion system effector E3 ubiquitin transferase SspH2;


Pssm-ID: 185285 [Multi-domain]  Cd Length: 788  Bit Score: 44.00  E-value: 1.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907069125 227 LENIPPLPQMTTYLYARFNHISHIQAGDfKGLTKLRridLSGNSISSIHndalRLLPALQDLILPENQLAALPVLPSGIE 306
Cdd:PRK15387  254 LTSLPVLPPGLLELSIFSNPLTHLPALP-SGLCKLW---IFGNQLTSLP----VLPPGLQELSVSDNQLASLPALPSELC 325
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1907069125 307 FLDVRLNRLQSSGIQPEAfvalkkLQFLYLANNMLDSIPgPLPLSLRSL 355
Cdd:PRK15387  326 KLWAYNNQLTSLPTLPSG------LQELSVSDNQLASLP-TLPSELYKL 367
PRK15387 PRK15387
type III secretion system effector E3 ubiquitin transferase SspH2;
258-362 4.42e-03

type III secretion system effector E3 ubiquitin transferase SspH2;


Pssm-ID: 185285 [Multi-domain]  Cd Length: 788  Bit Score: 39.38  E-value: 4.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907069125 258 LTKLRRIDLSGNSISSIHNDALRLLP-----ALQDLILPENQLAALPVLPSGIEFLDVRLNRLQSSGIQPEAFVAL---- 328
Cdd:PRK15387  192 VQKMRACLNNGNAVLNVGESGLTTLPdclpaHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELsifs 271
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1907069125 329 ----------KKLQFLYLANNMLDSIPgPLPLSLRSLHL---QVSSL 362
Cdd:PRK15387  272 nplthlpalpSGLCKLWIFGNQLTSLP-VLPPGLQELSVsdnQLASL 317
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
233-362 6.22e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 38.68  E-value: 6.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907069125 233 LPQMTT--YLYARFNHISHIQAGDFKGLTKLRRIDLSGNSISSIHNDALRLLPALQDLILPENQLAAlPVLPSGIEF--- 307
Cdd:PLN00113  208 LGQMKSlkWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG-PIPPSIFSLqkl 286
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1907069125 308 --LDVRLNRLqsSGIQPEAFVALKKLQFLYLANNMLDsipGPLPLSLRSL-HLQVSSL 362
Cdd:PLN00113  287 isLDLSDNSL--SGEIPELVIQLQNLEILHLFSNNFT---GKIPVALTSLpRLQVLQL 339
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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