|
Name |
Accession |
Description |
Interval |
E-value |
| Muskelin_N |
pfam06588 |
Muskelin N-terminus; This family represents the N-terminal region of muskelin and is found in ... |
6-179 |
5.61e-109 |
|
Muskelin N-terminus; This family represents the N-terminal region of muskelin and is found in conjunction with several pfam01344 repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1. :
Pssm-ID: 284099 Cd Length: 197 Bit Score: 328.32 E-value: 5.61e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907172791 6 NILVDKPNDQSSRWSSESNYPPQYLILKLERPAIVQNITFGKYEKTHVCNLKKFKVFGGMNEENMTELLSSGLKNDYNKE 85
Cdd:pfam06588 23 NILVDDPNDQNSRWSTSTNSPPQYLILKLPRPAIVTTITFGKYEKMHVCNLKKFRVYGGRDGEEMRELLCGGLKNDSNME 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907172791 86 TFTLKHKI-DEQMFPCRFIKIVPLLSWGPSFNFSIWYVELSGIDDPDIVQPCLNWYSKYREQEAIRLCLKHFRQHNYTEA 164
Cdd:pfam06588 103 TFNLLVKDyNEIYFPCQYIKIVPLLAWGPSFNFSIWYVELHGIDDPSAVSEFVKNYEMVREGEAIRLCLKHFRQCGYLDI 182
|
170
....*....|....*
gi 1907172791 165 FESLQKKTKIALEHP 179
Cdd:pfam06588 183 FEILQKRTSDKIEHP 197
|
|
| NanM super family |
cl34543 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
256-531 |
2.65e-12 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; The actual alignment was detected with superfamily member COG3055:
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 67.87 E-value: 2.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907172791 256 TVYLFGGWDGTQDLADFWAYSVKENQWtcisrdTEKENGPSARSCHKMCIdIQRRQIYTLGRYldSSVRNSKSLKSDFYR 335
Cdd:COG3055 24 KVYVAGGLSGGSASNSFEVYDPATNTW------SELAPLPGPPRHHAAAV-AQDGKLYVFGGF--TGANPSSTPLNDVYV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907172791 336 YDIDTNTWmllsedTAADGGPKLVFDHQMCMDSEKhmIYTFGGRilTCNGSVDDsrasepqfsgLFAFNCQCQTWKLLre 415
Cdd:COG3055 95 YDPATNTW------TKLAPMPTPRGGATALLLDGK--IYVVGGW--DDGGNVAW----------VEVYDPATGTWTQL-- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907172791 416 dscnagPEDIQSRIGHCMLFHSKNRcLYVFGGQRSktylndffsydvdsdhvdiiSDGTKKDSGMVPMTGFTQRATIDPE 495
Cdd:COG3055 153 ------APLPTPRDHLAAAVLPDGK-ILVIGGRNG--------------------SGFSNTWTTLAPLPTARAGHAAAVL 205
|
250 260 270
....*....|....*....|....*....|....*.
gi 1907172791 496 LNEIHVLSGlskdkekrEENVRNSFWIYDIVRNSWS 531
Cdd:COG3055 206 GGKILVFGG--------ESGFSDEVEAYDPATNTWT 233
|
|
| CTLH |
smart00668 |
C-terminal to LisH motif; Alpha-helical motif of unknown function. |
178-230 |
8.32e-03 |
|
C-terminal to LisH motif; Alpha-helical motif of unknown function. :
Pssm-ID: 128914 Cd Length: 58 Bit Score: 35.24 E-value: 8.32e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 1907172791 178 HPMLTDMHDKLVLKGDFDACEELIEKAVNDGL-----FNQYISQQEYKPRWSQIIPKS 230
Cdd:smart00668 1 EFDERKRIRELILKGDWDEALEWLSSLKPPLLernskLEFELRKQKFLELVRQGKLEE 58
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| Muskelin_N |
pfam06588 |
Muskelin N-terminus; This family represents the N-terminal region of muskelin and is found in ... |
6-179 |
5.61e-109 |
|
Muskelin N-terminus; This family represents the N-terminal region of muskelin and is found in conjunction with several pfam01344 repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1.
Pssm-ID: 284099 Cd Length: 197 Bit Score: 328.32 E-value: 5.61e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907172791 6 NILVDKPNDQSSRWSSESNYPPQYLILKLERPAIVQNITFGKYEKTHVCNLKKFKVFGGMNEENMTELLSSGLKNDYNKE 85
Cdd:pfam06588 23 NILVDDPNDQNSRWSTSTNSPPQYLILKLPRPAIVTTITFGKYEKMHVCNLKKFRVYGGRDGEEMRELLCGGLKNDSNME 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907172791 86 TFTLKHKI-DEQMFPCRFIKIVPLLSWGPSFNFSIWYVELSGIDDPDIVQPCLNWYSKYREQEAIRLCLKHFRQHNYTEA 164
Cdd:pfam06588 103 TFNLLVKDyNEIYFPCQYIKIVPLLAWGPSFNFSIWYVELHGIDDPSAVSEFVKNYEMVREGEAIRLCLKHFRQCGYLDI 182
|
170
....*....|....*
gi 1907172791 165 FESLQKKTKIALEHP 179
Cdd:pfam06588 183 FEILQKRTSDKIEHP 197
|
|
| NanM |
COG3055 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
256-531 |
2.65e-12 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 67.87 E-value: 2.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907172791 256 TVYLFGGWDGTQDLADFWAYSVKENQWtcisrdTEKENGPSARSCHKMCIdIQRRQIYTLGRYldSSVRNSKSLKSDFYR 335
Cdd:COG3055 24 KVYVAGGLSGGSASNSFEVYDPATNTW------SELAPLPGPPRHHAAAV-AQDGKLYVFGGF--TGANPSSTPLNDVYV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907172791 336 YDIDTNTWmllsedTAADGGPKLVFDHQMCMDSEKhmIYTFGGRilTCNGSVDDsrasepqfsgLFAFNCQCQTWKLLre 415
Cdd:COG3055 95 YDPATNTW------TKLAPMPTPRGGATALLLDGK--IYVVGGW--DDGGNVAW----------VEVYDPATGTWTQL-- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907172791 416 dscnagPEDIQSRIGHCMLFHSKNRcLYVFGGQRSktylndffsydvdsdhvdiiSDGTKKDSGMVPMTGFTQRATIDPE 495
Cdd:COG3055 153 ------APLPTPRDHLAAAVLPDGK-ILVIGGRNG--------------------SGFSNTWTTLAPLPTARAGHAAAVL 205
|
250 260 270
....*....|....*....|....*....|....*.
gi 1907172791 496 LNEIHVLSGlskdkekrEENVRNSFWIYDIVRNSWS 531
Cdd:COG3055 206 GGKILVFGG--------ESGFSDEVEAYDPATNTWT 233
|
|
| Kelch_3 |
pfam13415 |
Galactose oxidase, central domain; |
254-306 |
3.78e-07 |
|
Galactose oxidase, central domain;
Pssm-ID: 433188 [Multi-domain] Cd Length: 49 Bit Score: 47.28 E-value: 3.78e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1907172791 254 TETVYLFGGWD--GTQDLADFWAYSVKENQWTCISrdtekeNGPSARSCHKMCID 306
Cdd:pfam13415 1 GDKLYIFGGLGfdGQTRLNDLYVYDLDTNTWTQIG------DLPPPRSGHSATYI 49
|
|
| PLN02153 |
PLN02153 |
epithiospecifier protein |
279-447 |
1.33e-06 |
|
epithiospecifier protein
Pssm-ID: 177814 [Multi-domain] Cd Length: 341 Bit Score: 51.14 E-value: 1.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907172791 279 ENQWtcISRDTEKENGPSARSCHKMCIdiQRRQIYTLGryldSSVRNSKSLKSDFYRYDIDTNTWMLlsedTAADGGPKL 358
Cdd:PLN02153 6 QGGW--IKVEQKGGKGPGPRCSHGIAV--VGDKLYSFG----GELKPNEHIDKDLYVFDFNTHTWSI----APANGDVPR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907172791 359 VFDHQMCMDSEKHMIYTFGGRiltcngsvDDSRAsepqFSGLFAFNCQCQTWKLLREDSCNAGPEdiqSRIGHCMLfhSK 438
Cdd:PLN02153 74 ISCLGVRMVAVGTKLYIFGGR--------DEKRE----FSDFYSYDTVKNEWTFLTKLDEEGGPE---ARTFHSMA--SD 136
|
....*....
gi 1907172791 439 NRCLYVFGG 447
Cdd:PLN02153 137 ENHVYVFGG 145
|
|
| Kelch |
smart00612 |
Kelch domain; |
257-283 |
1.32e-03 |
|
Kelch domain;
Pssm-ID: 128874 [Multi-domain] Cd Length: 47 Bit Score: 37.15 E-value: 1.32e-03
|
| CTLH |
smart00668 |
C-terminal to LisH motif; Alpha-helical motif of unknown function. |
178-230 |
8.32e-03 |
|
C-terminal to LisH motif; Alpha-helical motif of unknown function.
Pssm-ID: 128914 Cd Length: 58 Bit Score: 35.24 E-value: 8.32e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 1907172791 178 HPMLTDMHDKLVLKGDFDACEELIEKAVNDGL-----FNQYISQQEYKPRWSQIIPKS 230
Cdd:smart00668 1 EFDERKRIRELILKGDWDEALEWLSSLKPPLLernskLEFELRKQKFLELVRQGKLEE 58
|
|
| LisH |
smart00667 |
Lissencephaly type-1-like homology motif; Alpha-helical motif present in Lis1, treacle, ... |
144-174 |
8.95e-03 |
|
Lissencephaly type-1-like homology motif; Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Pssm-ID: 128913 Cd Length: 34 Bit Score: 34.33 E-value: 8.95e-03
10 20 30
....*....|....*....|....*....|.
gi 1907172791 144 REQEAIRLCLKHFRQHNYTEAFESLQKKTKI 174
Cdd:smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| Muskelin_N |
pfam06588 |
Muskelin N-terminus; This family represents the N-terminal region of muskelin and is found in ... |
6-179 |
5.61e-109 |
|
Muskelin N-terminus; This family represents the N-terminal region of muskelin and is found in conjunction with several pfam01344 repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1.
Pssm-ID: 284099 Cd Length: 197 Bit Score: 328.32 E-value: 5.61e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907172791 6 NILVDKPNDQSSRWSSESNYPPQYLILKLERPAIVQNITFGKYEKTHVCNLKKFKVFGGMNEENMTELLSSGLKNDYNKE 85
Cdd:pfam06588 23 NILVDDPNDQNSRWSTSTNSPPQYLILKLPRPAIVTTITFGKYEKMHVCNLKKFRVYGGRDGEEMRELLCGGLKNDSNME 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907172791 86 TFTLKHKI-DEQMFPCRFIKIVPLLSWGPSFNFSIWYVELSGIDDPDIVQPCLNWYSKYREQEAIRLCLKHFRQHNYTEA 164
Cdd:pfam06588 103 TFNLLVKDyNEIYFPCQYIKIVPLLAWGPSFNFSIWYVELHGIDDPSAVSEFVKNYEMVREGEAIRLCLKHFRQCGYLDI 182
|
170
....*....|....*
gi 1907172791 165 FESLQKKTKIALEHP 179
Cdd:pfam06588 183 FEILQKRTSDKIEHP 197
|
|
| NanM |
COG3055 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
256-531 |
2.65e-12 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 67.87 E-value: 2.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907172791 256 TVYLFGGWDGTQDLADFWAYSVKENQWtcisrdTEKENGPSARSCHKMCIdIQRRQIYTLGRYldSSVRNSKSLKSDFYR 335
Cdd:COG3055 24 KVYVAGGLSGGSASNSFEVYDPATNTW------SELAPLPGPPRHHAAAV-AQDGKLYVFGGF--TGANPSSTPLNDVYV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907172791 336 YDIDTNTWmllsedTAADGGPKLVFDHQMCMDSEKhmIYTFGGRilTCNGSVDDsrasepqfsgLFAFNCQCQTWKLLre 415
Cdd:COG3055 95 YDPATNTW------TKLAPMPTPRGGATALLLDGK--IYVVGGW--DDGGNVAW----------VEVYDPATGTWTQL-- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907172791 416 dscnagPEDIQSRIGHCMLFHSKNRcLYVFGGQRSktylndffsydvdsdhvdiiSDGTKKDSGMVPMTGFTQRATIDPE 495
Cdd:COG3055 153 ------APLPTPRDHLAAAVLPDGK-ILVIGGRNG--------------------SGFSNTWTTLAPLPTARAGHAAAVL 205
|
250 260 270
....*....|....*....|....*....|....*.
gi 1907172791 496 LNEIHVLSGlskdkekrEENVRNSFWIYDIVRNSWS 531
Cdd:COG3055 206 GGKILVFGG--------ESGFSDEVEAYDPATNTWT 233
|
|
| F5_F8_type_C |
pfam00754 |
F5/8 type C domain; This domain is also known as the discoidin (DS) domain family. |
2-124 |
3.32e-07 |
|
F5/8 type C domain; This domain is also known as the discoidin (DS) domain family.
Pssm-ID: 459925 [Multi-domain] Cd Length: 127 Bit Score: 49.75 E-value: 3.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907172791 2 EYKRNILVDkpNDQSSRWSSESNYPPQYLILKLERPAIVQNITFGKYEKTHVCNLKKFKVFGGMNEENMTELLSSGLKND 81
Cdd:pfam00754 11 EGPAAAALD--GDPNTAWSAWSGDDPQWIQVDLGKPKKITGVVTQGRQDGSNGYVTSYKIEYSLDGENWTTVKDEKIPGN 88
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1907172791 82 YNKETftlkhkIDEQMFPC----RFIKIVPlLSWGPSFNFSIWyVEL 124
Cdd:pfam00754 89 NDNNT------PVTNTFDPpikaRYVRIVP-TSWNGGNGIALR-AEL 127
|
|
| Kelch_3 |
pfam13415 |
Galactose oxidase, central domain; |
254-306 |
3.78e-07 |
|
Galactose oxidase, central domain;
Pssm-ID: 433188 [Multi-domain] Cd Length: 49 Bit Score: 47.28 E-value: 3.78e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1907172791 254 TETVYLFGGWD--GTQDLADFWAYSVKENQWTCISrdtekeNGPSARSCHKMCID 306
Cdd:pfam13415 1 GDKLYIFGGLGfdGQTRLNDLYVYDLDTNTWTQIG------DLPPPRSGHSATYI 49
|
|
| PLN02153 |
PLN02153 |
epithiospecifier protein |
279-447 |
1.33e-06 |
|
epithiospecifier protein
Pssm-ID: 177814 [Multi-domain] Cd Length: 341 Bit Score: 51.14 E-value: 1.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907172791 279 ENQWtcISRDTEKENGPSARSCHKMCIdiQRRQIYTLGryldSSVRNSKSLKSDFYRYDIDTNTWMLlsedTAADGGPKL 358
Cdd:PLN02153 6 QGGW--IKVEQKGGKGPGPRCSHGIAV--VGDKLYSFG----GELKPNEHIDKDLYVFDFNTHTWSI----APANGDVPR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907172791 359 VFDHQMCMDSEKHMIYTFGGRiltcngsvDDSRAsepqFSGLFAFNCQCQTWKLLREDSCNAGPEdiqSRIGHCMLfhSK 438
Cdd:PLN02153 74 ISCLGVRMVAVGTKLYIFGGR--------DEKRE----FSDFYSYDTVKNEWTFLTKLDEEGGPE---ARTFHSMA--SD 136
|
....*....
gi 1907172791 439 NRCLYVFGG 447
Cdd:PLN02153 137 ENHVYVFGG 145
|
|
| Kelch_1 |
pfam01344 |
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ... |
242-286 |
4.49e-06 |
|
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.
Pssm-ID: 396078 [Multi-domain] Cd Length: 46 Bit Score: 44.14 E-value: 4.49e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 1907172791 242 MRGGHQMVidVQTETVYLFGGWDGTQDLADFWAYSVKENQWTCIS 286
Cdd:pfam01344 1 RRSGAGVV--VVGGKIYVIGGFDGNQSLNSVEVYDPETNTWSKLP 43
|
|
| PLN02153 |
PLN02153 |
epithiospecifier protein |
257-348 |
4.68e-06 |
|
epithiospecifier protein
Pssm-ID: 177814 [Multi-domain] Cd Length: 341 Bit Score: 49.21 E-value: 4.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907172791 257 VYLFGGWDGTQDLADFWAYSVKENQWTCISRdTEKENGPSARSCHKMCIDiqRRQIYTLGRYLDSSVRNSKSLKSDFYRY 336
Cdd:PLN02153 88 LYIFGGRDEKREFSDFYSYDTVKNEWTFLTK-LDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEAY 164
|
90
....*....|..
gi 1907172791 337 DIDTNTWMLLSE 348
Cdd:PLN02153 165 NIADGKWVQLPD 176
|
|
| PLN02193 |
PLN02193 |
nitrile-specifier protein |
256-358 |
1.06e-04 |
|
nitrile-specifier protein
Pssm-ID: 177844 [Multi-domain] Cd Length: 470 Bit Score: 45.33 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907172791 256 TVYLFGGWDGTQDLADFWAYSVKENQWTCIsrdTEKENGPSARSCHKMCIDiqRRQIYTLGRYldSSVRNSKSLKSdfyr 335
Cdd:PLN02193 230 TLYVFGGRDASRQYNGFYSFDTTTNEWKLL---TPVEEGPTPRSFHSMAAD--EENVYVFGGV--SATARLKTLDS---- 298
|
90 100
....*....|....*....|....*.
gi 1907172791 336 YDIDTNTWMLLS---EDTAADGGPKL 358
Cdd:PLN02193 299 YNIVDKKWFHCStpgDSFSIRGGAGL 324
|
|
| PLN02153 |
PLN02153 |
epithiospecifier protein |
343-530 |
2.34e-04 |
|
epithiospecifier protein
Pssm-ID: 177814 [Multi-domain] Cd Length: 341 Bit Score: 43.82 E-value: 2.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907172791 343 WMLLSEDTAADGGPKLvfDHQMCMDSEKhmIYTFGGRiLTCNGSVDDSrasepqfsgLFAFNCQCQTWKLLredSCNAGP 422
Cdd:PLN02153 9 WIKVEQKGGKGPGPRC--SHGIAVVGDK--LYSFGGE-LKPNEHIDKD---------LYVFDFNTHTWSIA---PANGDV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907172791 423 EDIqSRIGHCMLfhSKNRCLYVFGGQRSKTYLNDFFSYDVDSDHVDIIsdgTKKDSGMVPMTGFTQRATIDPelNEIHVL 502
Cdd:PLN02153 72 PRI-SCLGVRMV--AVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFL---TKLDEEGGPEARTFHSMASDE--NHVYVF 143
|
170 180
....*....|....*....|....*...
gi 1907172791 503 SGLSKDKEKREENVRNSFWIYDIVRNSW 530
Cdd:PLN02153 144 GGVSKGGLMKTPERFRTIEAYNIADGKW 171
|
|
| Kelch_4 |
pfam13418 |
Galactose oxidase, central domain; |
243-286 |
4.48e-04 |
|
Galactose oxidase, central domain;
Pssm-ID: 433191 [Multi-domain] Cd Length: 49 Bit Score: 38.36 E-value: 4.48e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1907172791 243 RGGHQMVIdVQTETVYLFGG--WDGTQdLADFWAYSVKENQWTCIS 286
Cdd:pfam13418 2 RAYHTSTS-IPDDTIYLFGGegEDGTL-LSDLWVFDLSTNEWTRLG 45
|
|
| PLN02193 |
PLN02193 |
nitrile-specifier protein |
355-530 |
5.77e-04 |
|
nitrile-specifier protein
Pssm-ID: 177844 [Multi-domain] Cd Length: 470 Bit Score: 43.02 E-value: 5.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907172791 355 GPKLVFDHQMCMDSEKhmIYTFGGRiLTCNGSVDDSrasepqfsgLFAFNCQCQTWKLlredSCNAGPEDIQSRIGHCML 434
Cdd:PLN02193 162 GPGLRCSHGIAQVGNK--IYSFGGE-FTPNQPIDKH---------LYVFDLETRTWSI----SPATGDVPHLSCLGVRMV 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907172791 435 fhSKNRCLYVFGGQRSKTYLNDFFSYDVDSDHVDIIsdgTKKDSGMVPMTGFTQRAtidpELNEIHVLSGLSKdkekree 514
Cdd:PLN02193 226 --SIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLL---TPVEEGPTPRSFHSMAA----DEENVYVFGGVSA------- 289
|
170
....*....|....*..
gi 1907172791 515 NVR-NSFWIYDIVRNSW 530
Cdd:PLN02193 290 TARlKTLDSYNIVDKKW 306
|
|
| Kelch_1 |
pfam01344 |
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ... |
428-465 |
1.03e-03 |
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Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.
Pssm-ID: 396078 [Multi-domain] Cd Length: 46 Bit Score: 37.21 E-value: 1.03e-03
10 20 30
....*....|....*....|....*....|....*...
gi 1907172791 428 RIGHCMLFHskNRCLYVFGGQRSKTYLNDFFSYDVDSD 465
Cdd:pfam01344 2 RSGAGVVVV--GGKIYVIGGFDGNQSLNSVEVYDPETN 37
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| Kelch |
smart00612 |
Kelch domain; |
257-283 |
1.32e-03 |
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Kelch domain;
Pssm-ID: 128874 [Multi-domain] Cd Length: 47 Bit Score: 37.15 E-value: 1.32e-03
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| CTLH |
smart00668 |
C-terminal to LisH motif; Alpha-helical motif of unknown function. |
178-230 |
8.32e-03 |
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C-terminal to LisH motif; Alpha-helical motif of unknown function.
Pssm-ID: 128914 Cd Length: 58 Bit Score: 35.24 E-value: 8.32e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 1907172791 178 HPMLTDMHDKLVLKGDFDACEELIEKAVNDGL-----FNQYISQQEYKPRWSQIIPKS 230
Cdd:smart00668 1 EFDERKRIRELILKGDWDEALEWLSSLKPPLLernskLEFELRKQKFLELVRQGKLEE 58
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| LisH |
smart00667 |
Lissencephaly type-1-like homology motif; Alpha-helical motif present in Lis1, treacle, ... |
144-174 |
8.95e-03 |
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Lissencephaly type-1-like homology motif; Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Pssm-ID: 128913 Cd Length: 34 Bit Score: 34.33 E-value: 8.95e-03
10 20 30
....*....|....*....|....*....|.
gi 1907172791 144 REQEAIRLCLKHFRQHNYTEAFESLQKKTKI 174
Cdd:smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32
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