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Conserved domains on  [gi|1958763551|ref|XP_038961627|]
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AP-5 complex subunit sigma-1 isoform X1 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AP-5_subunit_s1 super family cl20879
AP-5 complex subunit sigma-1; This family of proteins are subunits of the adaptor protein ...
 1-59 8.68e-17

AP-5 complex subunit sigma-1; This family of proteins are subunits of the adaptor protein complex AP-5.


The actual alignment was detected with superfamily member pfam15001:

Pssm-ID: 434380  Cd Length: 192  Bit Score: 72.00  E-value: 8.68e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958763551   1 MVHAFLIHTLRAPnledtGLCRVLYSCVFGAEKS-PDDPRPHGAERDRLFRKEQILAVAR 59
Cdd:pfam15001   1 MVYAFLIHTLLSP-----GESRVLYSRVYGAEKDdSEEDRELAPEEERLLQKEQLAAVAR 55
 
Name Accession Description Interval E-value
AP-5_subunit_s1 pfam15001
AP-5 complex subunit sigma-1; This family of proteins are subunits of the adaptor protein ...
 1-59 8.68e-17

AP-5 complex subunit sigma-1; This family of proteins are subunits of the adaptor protein complex AP-5.


Pssm-ID: 434380  Cd Length: 192  Bit Score: 72.00  E-value: 8.68e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958763551   1 MVHAFLIHTLRAPnledtGLCRVLYSCVFGAEKS-PDDPRPHGAERDRLFRKEQILAVAR 59
Cdd:pfam15001   1 MVYAFLIHTLLSP-----GESRVLYSRVYGAEKDdSEEDRELAPEEERLLQKEQLAAVAR 55
 
Name Accession Description Interval E-value
AP-5_subunit_s1 pfam15001
AP-5 complex subunit sigma-1; This family of proteins are subunits of the adaptor protein ...
 1-59 8.68e-17

AP-5 complex subunit sigma-1; This family of proteins are subunits of the adaptor protein complex AP-5.


Pssm-ID: 434380  Cd Length: 192  Bit Score: 72.00  E-value: 8.68e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958763551   1 MVHAFLIHTLRAPnledtGLCRVLYSCVFGAEKS-PDDPRPHGAERDRLFRKEQILAVAR 59
Cdd:pfam15001   1 MVYAFLIHTLLSP-----GESRVLYSRVYGAEKDdSEEDRELAPEEERLLQKEQLAAVAR 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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