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Conserved domains on  [gi|1958783166|ref|XP_038968228|]
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pecanex-like protein 1 isoform X9 [Rattus norvegicus]

Protein Classification

oligosaccharide repeat unit polymerase; pecanex family protein( domain architecture ID 10523572)

oligosaccharide repeat unit polymerase may act to polymerize the oligosaccharide repeat units of surface polysaccharides, including O-antigen in Gram-negative bacteria and capsular polysaccharide in Gram-positive bacteria; pecanex family protein similar to Drosophila melanogaster protein pecanex that is involved in neurogenesis

Gene Ontology:  GO:0016020

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pecanex_C pfam05041
Pecanex protein (C-terminus); This family consists of C terminal region of the pecanex protein ...
 892-1118 3.78e-139

Pecanex protein (C-terminus); This family consists of C terminal region of the pecanex protein homologs. The pecanex protein is a maternal-effect neurogenic gene found in Drosophila.


:

Pssm-ID: 461533  Cd Length: 227  Bit Score: 425.58  E-value: 3.78e-139
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783166  892 DVDKDSSLVTLCYGLCVLGRRALGTASHHMSSNLESFLYGLHALFKGDFRISSVRDEWIFADMELLRKVVVPGIRMSIKL 971
Cdd:pfam05041    1 DSDSDSTLVTLCFALSLLGRRALGSASHSMSNSLESFLYGLHFLFKGDFRITSDKDEWVFMDLDLLRKVVAPAMRMALKL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783166  972 HQDHFTSPDEYDDPTVLYEAIVSHEKNLVIAHEGDPAWRSAVLANSPSLLALRHVMDDGTNEYKIIMLNRRYLSFRVIKV 1051
Cdd:pfam05041   81 HQDHFTDPDEYDENEVLYDAIHTYELVIVIEHESDPRWRVAVLSNNPSLLALRHVDDDGEDEYKIIMLNRRTLSFRVIKV 160

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958783166 1052 NKECVRGLWAGQQQELVFLRNRNPERGSIQNAKQALRNMINSSCDQPIGYPIFVSPLTTSYSDSHDQ 1118
Cdd:pfam05041  161 NRECVRGLWAGQQQELIFLRNRNRERGSIQNAKQALRNIINSSCDQPIGYPIYVSPLTTSYSNTHLQ 227
 
Name Accession Description Interval E-value
Pecanex_C pfam05041
Pecanex protein (C-terminus); This family consists of C terminal region of the pecanex protein ...
 892-1118 3.78e-139

Pecanex protein (C-terminus); This family consists of C terminal region of the pecanex protein homologs. The pecanex protein is a maternal-effect neurogenic gene found in Drosophila.


Pssm-ID: 461533  Cd Length: 227  Bit Score: 425.58  E-value: 3.78e-139
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783166  892 DVDKDSSLVTLCYGLCVLGRRALGTASHHMSSNLESFLYGLHALFKGDFRISSVRDEWIFADMELLRKVVVPGIRMSIKL 971
Cdd:pfam05041    1 DSDSDSTLVTLCFALSLLGRRALGSASHSMSNSLESFLYGLHFLFKGDFRITSDKDEWVFMDLDLLRKVVAPAMRMALKL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783166  972 HQDHFTSPDEYDDPTVLYEAIVSHEKNLVIAHEGDPAWRSAVLANSPSLLALRHVMDDGTNEYKIIMLNRRYLSFRVIKV 1051
Cdd:pfam05041   81 HQDHFTDPDEYDENEVLYDAIHTYELVIVIEHESDPRWRVAVLSNNPSLLALRHVDDDGEDEYKIIMLNRRTLSFRVIKV 160

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958783166 1052 NKECVRGLWAGQQQELVFLRNRNPERGSIQNAKQALRNMINSSCDQPIGYPIFVSPLTTSYSDSHDQ 1118
Cdd:pfam05041  161 NRECVRGLWAGQQQELIFLRNRNRERGSIQNAKQALRNIINSSCDQPIGYPIYVSPLTTSYSNTHLQ 227
 
Name Accession Description Interval E-value
Pecanex_C pfam05041
Pecanex protein (C-terminus); This family consists of C terminal region of the pecanex protein ...
 892-1118 3.78e-139

Pecanex protein (C-terminus); This family consists of C terminal region of the pecanex protein homologs. The pecanex protein is a maternal-effect neurogenic gene found in Drosophila.


Pssm-ID: 461533  Cd Length: 227  Bit Score: 425.58  E-value: 3.78e-139
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783166  892 DVDKDSSLVTLCYGLCVLGRRALGTASHHMSSNLESFLYGLHALFKGDFRISSVRDEWIFADMELLRKVVVPGIRMSIKL 971
Cdd:pfam05041    1 DSDSDSTLVTLCFALSLLGRRALGSASHSMSNSLESFLYGLHFLFKGDFRITSDKDEWVFMDLDLLRKVVAPAMRMALKL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783166  972 HQDHFTSPDEYDDPTVLYEAIVSHEKNLVIAHEGDPAWRSAVLANSPSLLALRHVMDDGTNEYKIIMLNRRYLSFRVIKV 1051
Cdd:pfam05041   81 HQDHFTDPDEYDENEVLYDAIHTYELVIVIEHESDPRWRVAVLSNNPSLLALRHVDDDGEDEYKIIMLNRRTLSFRVIKV 160

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958783166 1052 NKECVRGLWAGQQQELVFLRNRNPERGSIQNAKQALRNMINSSCDQPIGYPIFVSPLTTSYSDSHDQ 1118
Cdd:pfam05041  161 NRECVRGLWAGQQQELIFLRNRNRERGSIQNAKQALRNIINSSCDQPIGYPIYVSPLTTSYSNTHLQ 227
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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