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Conserved domains on  [gi|159341096|ref|YP_001542655|]
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putative transcriptional regulator [Acidianus rod-shaped virus 1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HTH_ARSR super family cl46857
Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric ...
 51-98 2.65e-07

Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.


The actual alignment was detected with superfamily member smart00347:

Pssm-ID: 481197 [Multi-domain]  Cd Length: 101  Bit Score: 44.51  E-value: 2.65e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 159341096    51 RVLKRLEQKGWIAYYHIRNDdtgRRRKYVCLTPEGLAILNKRVSKAKQ 98
Cdd:smart00347  43 RVLDRLEKKGLVRREPSPED---RRSVLVSLTEEGRELIEQLLEARSE 87
 
Name Accession Description Interval E-value
HTH_MARR smart00347
helix_turn_helix multiple antibiotic resistance protein;
51-98 2.65e-07

helix_turn_helix multiple antibiotic resistance protein;


Pssm-ID: 197670 [Multi-domain]  Cd Length: 101  Bit Score: 44.51  E-value: 2.65e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 159341096    51 RVLKRLEQKGWIAYYHIRNDdtgRRRKYVCLTPEGLAILNKRVSKAKQ 98
Cdd:smart00347  43 RVLDRLEKKGLVRREPSPED---RRSVLVSLTEEGRELIEQLLEARSE 87
MarR COG1846
DNA-binding transcriptional regulator, MarR family [Transcription];
51-91 3.47e-07

DNA-binding transcriptional regulator, MarR family [Transcription];


Pssm-ID: 441451 [Multi-domain]  Cd Length: 142  Bit Score: 44.96  E-value: 3.47e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 159341096  51 RVLKRLEQKGWIayyHIRNDDTGRRRKYVCLTPEGLAILNK 91
Cdd:COG1846   71 RLLDRLEEKGLV---EREPDPEDRRAVLVRLTEKGRALLEE 108
 
Name Accession Description Interval E-value
HTH_MARR smart00347
helix_turn_helix multiple antibiotic resistance protein;
51-98 2.65e-07

helix_turn_helix multiple antibiotic resistance protein;


Pssm-ID: 197670 [Multi-domain]  Cd Length: 101  Bit Score: 44.51  E-value: 2.65e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 159341096    51 RVLKRLEQKGWIAYYHIRNDdtgRRRKYVCLTPEGLAILNKRVSKAKQ 98
Cdd:smart00347  43 RVLDRLEKKGLVRREPSPED---RRSVLVSLTEEGRELIEQLLEARSE 87
MarR COG1846
DNA-binding transcriptional regulator, MarR family [Transcription];
51-91 3.47e-07

DNA-binding transcriptional regulator, MarR family [Transcription];


Pssm-ID: 441451 [Multi-domain]  Cd Length: 142  Bit Score: 44.96  E-value: 3.47e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 159341096  51 RVLKRLEQKGWIayyHIRNDDTGRRRKYVCLTPEGLAILNK 91
Cdd:COG1846   71 RLLDRLEEKGLV---EREPDPEDRRAVLVRLTEKGRALLEE 108
PadR COG1695
DNA-binding transcriptional regulator, PadR family [Transcription];
51-98 2.25e-06

DNA-binding transcriptional regulator, PadR family [Transcription];


Pssm-ID: 441301  Cd Length: 102  Bit Score: 42.23  E-value: 2.25e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 159341096  51 RVLKRLEQKGWIAYYHIRNDDtGRRRKYVCLTPEGLAILNKRVSKAKQ 98
Cdd:COG1695   49 PALKRLEKEGLVESEWEESEG-GPRRKYYRLTEAGREELAEWLEEWEK 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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