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Conserved domains on  [gi|302632658|ref|YP_003848754|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Cuora pani]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009571)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 2-107 1.03e-31

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 108.04  E-value: 1.03e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302632658   2 NLMISITMIYLALPTILTLLNYWFTLAKPDNEKLSPYECGSTHKSPPSPTIFNSIFLSSNFI-----------PSIWFSN 70
Cdd:MTH00113   1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFllfdleialllPLPWAIN 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 302632658  71 RTTTTSAMSHSTPMSNLhLYLSLHYHIITnpGPPLWM 107
Cdd:MTH00113  81 LTTPTTTLTWATIILTL-LTLGLIYEWLQ--GGLEWA 114
 
Name Accession Description Interval E-value
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 2-107 1.03e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 108.04  E-value: 1.03e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302632658   2 NLMISITMIYLALPTILTLLNYWFTLAKPDNEKLSPYECGSTHKSPPSPTIFNSIFLSSNFI-----------PSIWFSN 70
Cdd:MTH00113   1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFllfdleialllPLPWAIN 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 302632658  71 RTTTTSAMSHSTPMSNLhLYLSLHYHIITnpGPPLWM 107
Cdd:MTH00113  81 LTTPTTTLTWATIILTL-LTLGLIYEWLQ--GGLEWA 114
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
20-41 2.96e-03

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 34.32  E-value: 2.96e-03
                          10        20
                  ....*....|....*....|..
gi 302632658   20 LLNYWFTLAKPDNEKLSPYECG 41
Cdd:pfam00507   2 LLSRLLGPKRPNPEKLSPYECG 23
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 12-41 8.44e-03

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 33.56  E-value: 8.44e-03
                         10        20        30
                 ....*....|....*....|....*....|
gi 302632658  12 LALPTILTLLNYWFTLAKPDNEKLSPYECG 41
Cdd:COG0838   16 LGLALAMLLLSRLLGPKRPNPEKLSPYECG 45
 
Name Accession Description Interval E-value
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 2-107 1.03e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 108.04  E-value: 1.03e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302632658   2 NLMISITMIYLALPTILTLLNYWFTLAKPDNEKLSPYECGSTHKSPPSPTIFNSIFLSSNFI-----------PSIWFSN 70
Cdd:MTH00113   1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFllfdleialllPLPWAIN 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 302632658  71 RTTTTSAMSHSTPMSNLhLYLSLHYHIITnpGPPLWM 107
Cdd:MTH00113  81 LTTPTTTLTWATIILTL-LTLGLIYEWLQ--GGLEWA 114
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-41 1.69e-10

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 53.77  E-value: 1.69e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 302632658   1 MNLMISITMIYLALPTILTLLNYWFTLAKPDNEKLSPYECG 41
Cdd:MTH00136   1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECG 41
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-41 6.27e-08

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 46.91  E-value: 6.27e-08
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 302632658   3 LMISITMIYLALPTILTLLNYWFTLAKPDNEKLSPYECG 41
Cdd:MTH00069   1 LIMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECG 39
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-41 8.18e-07

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 44.12  E-value: 8.18e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 302632658   1 MNLMISITMIYLALPTILTLLNYWFTLAKPDNEKLSPYECG 41
Cdd:MTH00203   1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECG 41
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-41 1.47e-04

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 38.04  E-value: 1.47e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 302632658   1 MNLMISITMIYLALPTILTLLNYWFTLAKPDNEKLSPYECG 41
Cdd:MTH00042   1 MTNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECG 41
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
20-41 2.96e-03

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 34.32  E-value: 2.96e-03
                          10        20
                  ....*....|....*....|..
gi 302632658   20 LLNYWFTLAKPDNEKLSPYECG 41
Cdd:pfam00507   2 LLSRLLGPKRPNPEKLSPYECG 23
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-41 5.71e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 33.76  E-value: 5.71e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 302632658   1 MNLMISItMIYLALPTILTLLNYWFTLAKPDNEKLSPYECG 41
Cdd:MTH00106   1 MNLMLTL-LTNTLLASLLVLIAFWLPQLNIYSEKASPYECG 40
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 12-41 8.44e-03

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 33.56  E-value: 8.44e-03
                         10        20        30
                 ....*....|....*....|....*....|
gi 302632658  12 LALPTILTLLNYWFTLAKPDNEKLSPYECG 41
Cdd:COG0838   16 LGLALAMLLLSRLLGPKRPNPEKLSPYECG 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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