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Conserved domains on  [gi|304322843|ref|YP_003856686|]
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ATP synthase F0 subunit 6 (mitochondrion) [Mekongiana xiangchengensis]

Protein Classification

ATP synthase F0 subunit 6( domain architecture ID 10009593)

ATP synthase F0 subunit 6 is part of the mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V), which produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-225 3.37e-75

ATP synthase F0 subunit 6; Provisional


:

Pssm-ID: 214441  Cd Length: 223  Bit Score: 226.59  E-value: 3.37e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843   1 MMTNLFSTFDPSTSL---LNTSIKFdqdHSLDYYKSHLYIEKYHHePLSWNKLNLNLHNEFKTLIGMKSFNGTtfIFIFS 77
Cdd:MTH00157   1 MMTNLFSIFDPSTSFnlsLNWLSTF---LGLLFIPSSFWLIPSRY-NILWNKILKTLHKEFKTLLGPKNKGST--LIFIS 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843  78 IFIMMMFNNFMGLFPF-FTSTSHLVFTLSIALPMWLSFMLFGWINNTKFMLAHLVPQGTPMALMSFMVLIETISNVIRPG 156
Cdd:MTH00157  75 LFSFILFNNFLGLFPYiFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPG 154

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 304322843 157 TLAVRLAANMIAGHLLLTLLGNTGPSMNLNVMMVIIIISQMLFTLESAVALNQAYAFSILSTLYSSESY 225
Cdd:MTH00157 155 TLAVRLAANMIAGHLLLTLLGNTGPSLSSMILSILILIQILLLILESAVAIIQSYVFSVLSTLYSSEVN 223
 
Name Accession Description Interval E-value
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-225 3.37e-75

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 226.59  E-value: 3.37e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843   1 MMTNLFSTFDPSTSL---LNTSIKFdqdHSLDYYKSHLYIEKYHHePLSWNKLNLNLHNEFKTLIGMKSFNGTtfIFIFS 77
Cdd:MTH00157   1 MMTNLFSIFDPSTSFnlsLNWLSTF---LGLLFIPSSFWLIPSRY-NILWNKILKTLHKEFKTLLGPKNKGST--LIFIS 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843  78 IFIMMMFNNFMGLFPF-FTSTSHLVFTLSIALPMWLSFMLFGWINNTKFMLAHLVPQGTPMALMSFMVLIETISNVIRPG 156
Cdd:MTH00157  75 LFSFILFNNFLGLFPYiFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPG 154

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 304322843 157 TLAVRLAANMIAGHLLLTLLGNTGPSMNLNVMMVIIIISQMLFTLESAVALNQAYAFSILSTLYSSESY 225
Cdd:MTH00157 155 TLAVRLAANMIAGHLLLTLLGNTGPSLSSMILSILILIQILLLILESAVAIIQSYVFSVLSTLYSSEVN 223
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 85-222 2.71e-39

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 132.52  E-value: 2.71e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843  85 NNFMGLFP-FFTSTSHLVFTLSIALPMWLSFMLFGWINNTKFMLAHLVPQGTPMALMSFMVLIETISNVIRPGTLAVRLA 163
Cdd:cd00310   18 SNLLGLIPySFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPIELISELIRPLSLSVRLF 97

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 304322843 164 ANMIAGHLLLTLLGNTGPSMNLNVMMVIIIISQMLFTLESAVALNQAYAFSILSTLYSS 222
Cdd:cd00310   98 ANMFAGHLLLALLSGLVPSLLSSVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 85-225 6.73e-38

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 131.17  E-value: 6.73e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843   85 NNFMGLFPF-FTSTSHLVFTLSIALPMWLSFMLFGWINNTKFMLAHLVPQGTPMALMSFMVLIETISNVIRPGTLAVRLA 163
Cdd:TIGR01131  84 SNLLGLIPYsFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVRLF 163

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 304322843  164 ANMIAGHLLLTLLGNTGPS-MNLNVMMVIIIISQMLFTLESAVALNQAYAFSILSTLYSSESY 225
Cdd:TIGR01131 164 ANISAGHLLLTLLSGLLFSlMSSAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP-synt_A pfam00119
ATP synthase A chain;
85-222 5.45e-21

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 87.16  E-value: 5.45e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843   85 NNFMGLFPF----FTSTSHLVFTLSIALPMWLSFMLFG-WINNTKFMLAHLVPQGTPMALMSFMVLIETISNVIRPGTLA 159
Cdd:pfam00119  71 SNLLGLIPKspggFTVTADINVTLALALIVFLLVHYYGiKKHGLGGYFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLS 150

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 304322843  160 VRLAANMIAGHLLLTLLGNTGPSM--NLNVMMVIIIISQMLFT-LESAVALNQAYAFSILSTLYSS 222
Cdd:pfam00119 151 LRLFGNMLAGHLLLLLLAGLIFALlsAGFLLGVIPPLLGVAWTlFELLVAFIQAYVFTMLTAVYIS 216
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 85-220 8.87e-17

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 75.49  E-value: 8.87e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843  85 NNFMGLFPFFTS-TSHLVFTLSIALPMWLSFMLFG-WINNTKFMLAHLVPQGTPmALMSFMVLIETISNVIRPGTLAVRL 162
Cdd:COG0356   71 SNLLGLIPGLFPpTADINVTLALALIVFVLVHYYGiKKKGLGGYLKHLFFPPFP-WLAPLMLPIEIISELARPLSLSLRL 149

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 304322843 163 AANMIAGHLLLTLLGNTGPSMNLNVMMVIIIISQMLFtlESAVALNQAYAFSILSTLY 220
Cdd:COG0356  150 FGNMFAGHIILLLLAGLAPFLLLGVLSLLLPVAWTAF--ELLVGFLQAYIFTMLTAVY 205
 
Name Accession Description Interval E-value
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-225 3.37e-75

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 226.59  E-value: 3.37e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843   1 MMTNLFSTFDPSTSL---LNTSIKFdqdHSLDYYKSHLYIEKYHHePLSWNKLNLNLHNEFKTLIGMKSFNGTtfIFIFS 77
Cdd:MTH00157   1 MMTNLFSIFDPSTSFnlsLNWLSTF---LGLLFIPSSFWLIPSRY-NILWNKILKTLHKEFKTLLGPKNKGST--LIFIS 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843  78 IFIMMMFNNFMGLFPF-FTSTSHLVFTLSIALPMWLSFMLFGWINNTKFMLAHLVPQGTPMALMSFMVLIETISNVIRPG 156
Cdd:MTH00157  75 LFSFILFNNFLGLFPYiFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPG 154

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 304322843 157 TLAVRLAANMIAGHLLLTLLGNTGPSMNLNVMMVIIIISQMLFTLESAVALNQAYAFSILSTLYSSESY 225
Cdd:MTH00157 155 TLAVRLAANMIAGHLLLTLLGNTGPSLSSMILSILILIQILLLILESAVAIIQSYVFSVLSTLYSSEVN 223
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 85-222 2.71e-39

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 132.52  E-value: 2.71e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843  85 NNFMGLFP-FFTSTSHLVFTLSIALPMWLSFMLFGWINNTKFMLAHLVPQGTPMALMSFMVLIETISNVIRPGTLAVRLA 163
Cdd:cd00310   18 SNLLGLIPySFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPIELISELIRPLSLSVRLF 97

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 304322843 164 ANMIAGHLLLTLLGNTGPSMNLNVMMVIIIISQMLFTLESAVALNQAYAFSILSTLYSS 222
Cdd:cd00310   98 ANMFAGHLLLALLSGLVPSLLSSVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 1-225 2.97e-39

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 135.16  E-value: 2.97e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843   1 MMTNLFSTFDPSTSLLNTSIKFDQDH---SLDYYKSHLYIeKYHHEPLSWNKLNlNLHNEFKTLIGMKSFNGTTFIFIFS 77
Cdd:MTH00176   1 MLVDLFSSFDPPNKNIFSMISLSWITlllFLLLMPSSVWF-CPSKLQVFMLMFS-TFLPEMILRSNGSYILGSASIIISL 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843  78 IFIMMMfNNFMGLFP-FFTSTSHLVFTLSIALPMWLSFMLFGWINNTKFMLAHLVPQGTPMALMSFMVLIETISNVIRPG 156
Cdd:MTH00176  79 FILVMS-LNLSGLIPyVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVPQGTPPLLNPFLVLIELVSLLIRPL 157

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 304322843 157 TLAVRLAANMIAGHLLLTLLGNTGPS---MNLNVMMVIIIISQMLFTLESAVALNQAYAFSILSTLYSSESY 225
Cdd:MTH00176 158 TLAVRLAANLSAGHLLLGLLGAAMWGllpVSPLIGFLLLIVQILYFMFEIAVCMIQAYVFTLLLSLYLDEHP 229
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 85-225 6.73e-38

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 131.17  E-value: 6.73e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843   85 NNFMGLFPF-FTSTSHLVFTLSIALPMWLSFMLFGWINNTKFMLAHLVPQGTPMALMSFMVLIETISNVIRPGTLAVRLA 163
Cdd:TIGR01131  84 SNLLGLIPYsFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVRLF 163

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 304322843  164 ANMIAGHLLLTLLGNTGPS-MNLNVMMVIIIISQMLFTLESAVALNQAYAFSILSTLYSSESY 225
Cdd:TIGR01131 164 ANISAGHLLLTLLSGLLFSlMSSAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 86-223 6.40e-31

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 113.53  E-value: 6.40e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843  86 NFMGLFPF-FTSTSHLVFTLSIALPMWLSFMLFGWINNTKFMLAHLVPQGTPMALMSFMVLIETISNVIRPGTLAVRLAA 164
Cdd:MTH00035  87 NVLGLFPYaFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLVPQGTPSFLIPLMVWIETLSLFAQPIALGLRLAA 166

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 304322843 165 NMIAGHLLLTLLGNT--GPSMNLNVMMVIIIISQMLFTLESAVALNQAYAFSILSTLYSSE 223
Cdd:MTH00035 167 NLTAGHLLIFLLSTAiwELSNSPLISIITLIIFFLLFILEIGVACIQAYVFTALVHFYLEQ 227
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 86-224 3.32e-30

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 111.50  E-value: 3.32e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843  86 NFMGLFPF-FTSTSHLVFTLSIALPMWLSFMLFGWINNTKFMLAHLVPQGTPMALMSFMVLIETISNVIRPGTLAVRLAA 164
Cdd:MTH00173  86 NLSGLLPFvFSVTSHLAFTFSLALPLWLSLILSGLFYNPSKSLAGLVPAGAPAGLNPFLVLIETVSILIRPLTLTVRLLA 165

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 304322843 165 NMIAGHLLLTLLGNTGPSMNLN----VMMVIIIISQMLFTLESAVALNQAYAFSILSTLYSSES 224
Cdd:MTH00173 166 NISAGHIVLTLIGNYLSSSLFSssvvSLLLVLLIQVGYFIFEVAVMLIQAYIFTLLIKLYSDEH 229
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 85-220 1.79e-28

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 106.96  E-value: 1.79e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843  85 NNFMGLFPF-FTSTSHLVFTLSIALPMWLSFMLFGWINNTKFMLAHLVPQGTPMALMSFMVLIETISNVIRPGTLAVRLA 163
Cdd:MTH00101  82 TNLLGLLPHsFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRLT 161

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843 164 ANMIAGHLLLTLLGNTG---PSMNLNVMMVIIIISQMLFTLESAVALNQAYAFSILSTLY 220
Cdd:MTH00101 162 ANITAGHLLIHLIGGATlalMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLY 221
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
 1-223 2.31e-28

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 106.74  E-value: 2.31e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843   1 MMTNLFSTFDPSTS-----LLNTSIKFDQDHSLDYYKSHLYIekyHHEPLSWNKLNLN--LHNEFKTLIG--MKSFNGTT 71
Cdd:MTH00005   1 MLTDIFSSFDPATNslfnnLSSTAFWAFNFSIILLLSSSFWI---TPNRLSSIMSPPKstMHTQLSRTFGkhLKGFSSLI 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843  72 FIFIFSIFIMmmfnNFMGLFPF-FTSTSHLVFTLSIALPMWLSFMLFGWINNTKFMLAHLVPQGTPMALMSFMVLIETIS 150
Cdd:MTH00005  78 SALFTMIILM----NLSGLLPYvFSTSSHLIFTLTLGLPLWLSLIMSSVTFSPKKFAAHLLPGGAPDWLNPFLVLIETIS 153

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 304322843 151 NVIRPGTLAVRLAANMIAGHLLLTLLGNTGPSMNLN--VMMVIIIISQMLFTL-ESAVALNQAYAFSILSTLYSSE 223
Cdd:MTH00005 154 ILVRPITLSFRLAANMSAGHIVLSLIGIYAASALFSsiSSTILLILTQMGYILfEVGICLIQAYIFCLLLSLYSDD 229
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 85-223 8.47e-28

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 105.03  E-value: 8.47e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843  85 NNFMGLFPF-FTSTSHLVFTLSIALPMWLSFMLFGWINNTKFMLAHLVPQGTPMALMSFMVLIETISNVIRPGTLAVRLA 163
Cdd:MTH00179  83 LNLLGLLPYtFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLIRPLALGVRLT 162

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 304322843 164 ANMIAGHLLLTLLGNTGPSMNLNVMMVIIIISQMLF---TLESAVALNQAYAFSILSTLYSSE 223
Cdd:MTH00179 163 ANITAGHLLMHLISSAVFVLMNFMGMVALLTLLVLFlltLLEVAVAMIQAYVFVLLLSLYLQE 225
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 86-223 4.21e-25

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 97.97  E-value: 4.21e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843  86 NFMGLFPF-FTSTSHLVFTLSIALPMWLSFMLFGWINNTKFMLAHLVPQGTPMALMSFMVLIETISNVIRPGTLAVRLAA 164
Cdd:MTH00120  84 NLLGLLPYtFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETISLLIRPLALGVRLTA 163

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 304322843 165 NMIAGHLLLTLLG----NTGPSMNLNVMMVIIIIsqMLFT-LESAVALNQAYAFSILSTLYSSE 223
Cdd:MTH00120 164 NLTAGHLLIQLIStatlNLLPTMPTLSLLTLIIL--LLLTiLELAVAMIQAYVFVLLLSLYLQE 225
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 86-224 1.70e-24

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 96.48  E-value: 1.70e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843  86 NFMGLFPF-FTSTSHLVFTLSIALPMWLSFMLFGWINNTKFMLAHLVPQGTPMALMSFMVLIETISNVIRPGTLAVRLAA 164
Cdd:MTH00132  84 NMLGLLPYtFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVRLTA 163

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 304322843 165 NMIAGHLLLTLLGNTGPSMNLNVMMVIIIISQMLF---TLESAVALNQAYAFSILSTLYSSES 224
Cdd:MTH00132 164 NLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFlltLLEVAVAMIQAYVFVLLLSLYLQEN 226
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 86-223 1.46e-22

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 91.57  E-value: 1.46e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843  86 NFMGLFPF-FTSTSHLVFTLSIALPMWLSFMLFGWINNTKFMLAHLVPQGTPMALMSFMVLIETISNVIRPGTLAVRLAA 164
Cdd:MTH00073  84 NLLGLLPYtFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHLLPEGTPTLLIPILIIIETISLFIRPLALGVRLTA 163

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 304322843 165 NMIAGHLLLTLLgNTGPSMNLNVMMVIIIISQM----LFTLESAVALNQAYAFSILSTLYSSE 223
Cdd:MTH00073 164 NLTAGHLLIQLI-STATLVLLPLMPTVSILTMIvlflLTLLEIAVAMIQAYVFVLLLSLYLQE 225
ATP-synt_A pfam00119
ATP synthase A chain;
85-222 5.45e-21

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 87.16  E-value: 5.45e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843   85 NNFMGLFPF----FTSTSHLVFTLSIALPMWLSFMLFG-WINNTKFMLAHLVPQGTPMALMSFMVLIETISNVIRPGTLA 159
Cdd:pfam00119  71 SNLLGLIPKspggFTVTADINVTLALALIVFLLVHYYGiKKHGLGGYFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLS 150

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 304322843  160 VRLAANMIAGHLLLTLLGNTGPSM--NLNVMMVIIIISQMLFT-LESAVALNQAYAFSILSTLYSS 222
Cdd:pfam00119 151 LRLFGNMLAGHLLLLLLAGLIFALlsAGFLLGVIPPLLGVAWTlFELLVAFIQAYVFTMLTAVYIS 216
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 86-225 2.50e-20

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 85.83  E-value: 2.50e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843  86 NFMGLFPF-FTSTSHLVFTLSIALPMWLSFMLFGWINNTKFMLAHLVPQGTPMALMSFMVLIETISNVIRPGTLAVRLAA 164
Cdd:MTH00175  97 NILGLFPYvFTPTAHIIITFGLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPFLVLIETLSYLIRAISLGVRLAA 176

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 304322843 165 NMIAGHLLLTLLGNTGPSMNLNVMMV--IIIISQMLFT--LESAVALNQAYAFSILSTLYSSESY 225
Cdd:MTH00175 177 NISAGHLLFAILSGFAFNMLSNGLIIlsLFPMLIMIFItlLEMAVAVIQAYVFCLLTTIYLGDTI 241
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 86-220 1.34e-19

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 83.55  E-value: 1.34e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843  86 NFMGLFPF-FTSTSHLVFTLSIALPMWLSFMLFGWINNTKFMLAHLVPQGTPMALMSFMVLIETISNVIRPGTLAVRLAA 164
Cdd:MTH00172  86 NLLGLFPYvFTPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISRAISLGVRLAA 165

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 304322843 165 NMIAGHLLLTLLGNTGPSMNLNVMMVI---IIISQMLFTLESAVALNQAYAFSILSTLY 220
Cdd:MTH00172 166 NLSAGHLLFAILAGFGFNMLCASGFLSlfpLLIMVFITLLEIAVAVIQAYVFCLLTTIY 224
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 85-220 8.87e-17

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 75.49  E-value: 8.87e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843  85 NNFMGLFPFFTS-TSHLVFTLSIALPMWLSFMLFG-WINNTKFMLAHLVPQGTPmALMSFMVLIETISNVIRPGTLAVRL 162
Cdd:COG0356   71 SNLLGLIPGLFPpTADINVTLALALIVFVLVHYYGiKKKGLGGYLKHLFFPPFP-WLAPLMLPIEIISELARPLSLSLRL 149

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 304322843 163 AANMIAGHLLLTLLGNTGPSMNLNVMMVIIIISQMLFtlESAVALNQAYAFSILSTLY 220
Cdd:COG0356  150 FGNMFAGHIILLLLAGLAPFLLLGVLSLLLPVAWTAF--ELLVGFLQAYIFTMLTAVY 205
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 86-225 6.78e-14

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 68.28  E-value: 6.78e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843  86 NFMGLFP--FFTSTSHLVFTLSIALPMWLSFMLFG-WINNTKFMLAHLVPQGTPmalmsFMVLIETISNVIRPGTLAVRL 162
Cdd:PRK05815  87 NLLGLIPylLFPPTADINVTLALALIVFVLVIYYGiKKKGLGGYLKEFYLQPHP-----LLLPIEIISEFSRPISLSLRL 161

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 304322843 163 AANMIAGHLLLTLLGnTGPSMNLNVMMVIIIISQMLFTLESAVALNQAYAFSILSTLYSSESY 225
Cdd:PRK05815 162 FGNMLAGELILALIA-LLGGAGLLLALAPLILPVAWTIFEIFVGTLQAYIFMMLTIVYISMAV 223
ATP6 MTH00174
ATP synthase F0 subunit 6; Provisional
 86-220 8.61e-11

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 133799  Cd Length: 252  Bit Score: 59.95  E-value: 8.61e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843  86 NFMGLFPF-FTSTSHLVFTLSIALPMWLSFMLFGWINNTKFMLAHLVPQGTPMALMSFMVLIETISNVIRPGTLAVRLAA 164
Cdd:MTH00174 105 NGLGLFPYvFTPTVHMVITLGLSFAIIVGTTLAGLITFRFNFFSILMPQGAPLALAPLLTIIETLSYISRAISLGVRLAA 184

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 304322843 165 NMIAGHLLLTLLG-------NTGPSMNLNVMMVIIIISQMlftLESAVALNQAYAFSILSTLY 220
Cdd:MTH00174 185 NISSGHLLFSIIAsfawkmiNTGILIGSFVPFAILIFVTI---LEMAVAIIQAYVFTLLTIVY 244
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 86-220 1.75e-08

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 53.59  E-value: 1.75e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843  86 NFMGLFPF-FTSTSHLVFTLSIALpmwLSFMLFGW----INNTKFMLAHLVpQGTPMALMSFMVLIETISNVIRPGTLAV 160
Cdd:PRK13419 185 NLLGLVPYgATATGNINVTLTLAV---FTFFITQYaaikAHGIKGYLAHLT-GGTHWSLWIIMIPIEFIGLFTKPFALTV 260

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 304322843 161 RLAANMIAGHLLLTLLgnTGPSMNLNVMMVIIIISQ----MLFTLESAVALNQAYAFSILSTLY 220
Cdd:PRK13419 261 RLFANMTAGHIVILSL--IFISFILKSYIVAVAVSVpfaiFIYLLELFVAFLQAYIFTMLSALF 322
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 95-220 1.26e-07

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 51.04  E-value: 1.26e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843  95 TSTSHLVFTLSIALPMWLSFMLFGWINNTKFMLAHLVPQGTPMALMSFMVLIETI-SNVIRPGTLAVRLAANMIAGHLL- 172
Cdd:PRK13417 217 TVTGDISVTMTLALLTMFLIYGAGFSYQGPKFIWHSVPNGVPLLLYPIMWPLEFIvSPMAKTFALTVRLLANMTAGHVIi 296

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 304322843 173 LTLLGNTGPSMNLNVMMVIIIISQMLFTLESAVALNQAYAFSILSTLY 220
Cdd:PRK13417 297 LALMGFIFQFQSWGIVPVSVIGSGLIYVLEIFVAFLQAYIFVLLTSLF 344
ATP6 MTH00087
ATP synthase F0 subunit 6; Provisional
 86-223 3.54e-06

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177152  Cd Length: 195  Bit Score: 46.12  E-value: 3.54e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843  86 NFMGLFP-FFTSTSHLVFTLSIALPMWLSFMLFGWINNTKFmlAHLVPQGTPMALMSF-MVLIETISNVIRPGTLAVRLA 163
Cdd:MTH00087  66 CFGGLFPySFSPCGMVEFTFLYALVAWLSTFLSFLSKSEKF--SVYLSKGSDSFLKTFsMLFVEIVSELSRPLALTLRLT 143

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322843 164 ANMIAGHLLLTLLGntgpSMNLNVMMVIIIISQMlftlESAVALNQAYAFSILSTLYSSE 223
Cdd:MTH00087 144 VNLMVGHLISSLLN----FLGEKYVWLSILAIMM----ECFVAFIQSYIFSRLIYLYLNE 195
ATP6 MTH00050
ATP synthase F0 subunit 6; Validated
 101-169 4.76e-04

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177125  Cd Length: 170  Bit Score: 39.48  E-value: 4.76e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 304322843 101 VFTLSIALPMWLSFMLFGWINNTKFMLAHLVPQGTPMALMSFMVLIETISNVIRPGTLAVRLAANMIAG 169
Cdd:MTH00050  53 VFLFVVVFPLFISLFLSRVFDSLNEFFSSFVPVGTPLYICPFVCIAETISYIIRPVVLILRPFINISLG 121
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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