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Conserved domains on  [gi|304322851|ref|YP_003856694|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Mekongiana xiangchengensis]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009622)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 22-311 3.42e-107

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177241  Cd Length: 306  Bit Score: 314.40  E-value: 3.42e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851  22 SVAFLTLFERSLLGYIHIRKGPNKVGYFGVSQPFSDALKLISKEQTYPILSNYFIYYFSPIFSFMISLIIWSVFPYLTYL 101
Cdd:MTH00193  18 SVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIYPYLFNL 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 102 CSFMYGFLFFLCCISLNVYSTMIAGWSSNSNYSLIGSLRSVAQTISYEVSLALISLSLIFLVGGFSMFNFMNYQYYCWFV 181
Cdd:MTH00193  98 ISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNLLDFMNYQKYIWFI 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 182 SVCFPLMICFFASCLAETIRTPFNFAEGESDLVSGfnFNVEYGAGGFTLIFLPSMPELFLWEYLWDYFSLEEILLIDILY 261
Cdd:MTH00193 178 FFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSG--FNVEYSSGGFALIFLAEYSSILFMSMLFVLMFLGGDLLSLLFY 255

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 304322851 262 -KIIFCFFLFYLSPWNFTSILMWKVDMFSLKEFTSFIFKFFNFFCGLKILL 311
Cdd:MTH00193 256 lKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 22-311 3.42e-107

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 314.40  E-value: 3.42e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851  22 SVAFLTLFERSLLGYIHIRKGPNKVGYFGVSQPFSDALKLISKEQTYPILSNYFIYYFSPIFSFMISLIIWSVFPYLTYL 101
Cdd:MTH00193  18 SVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIYPYLFNL 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 102 CSFMYGFLFFLCCISLNVYSTMIAGWSSNSNYSLIGSLRSVAQTISYEVSLALISLSLIFLVGGFSMFNFMNYQYYCWFV 181
Cdd:MTH00193  98 ISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNLLDFMNYQKYIWFI 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 182 SVCFPLMICFFASCLAETIRTPFNFAEGESDLVSGfnFNVEYGAGGFTLIFLPSMPELFLWEYLWDYFSLEEILLIDILY 261
Cdd:MTH00193 178 FFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSG--FNVEYSSGGFALIFLAEYSSILFMSMLFVLMFLGGDLLSLLFY 255

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 304322851 262 -KIIFCFFLFYLSPWNFTSILMWKVDMFSLKEFTSFIFKFFNFFCGLKILL 311
Cdd:MTH00193 256 lKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
NADHdh pfam00146
NADH dehydrogenase;
22-282 9.25e-63

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 200.78  E-value: 9.25e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851   22 SVAFLTLFERSLLGYIHIRKGPNKVGYFGVSQPFSDALKLISKEQTYPILSNYFIYYFSPIFSFMISLIIWSVFPY--LT 99
Cdd:pfam00146  12 AVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVIPFgpGL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851  100 YLCSFMYGFLFFLCCISLNVYSTMIAGWSSNSNYSLIGSLRSVAQTISYEVSLALISLSLIFLVGGFSMFNFMNYQYYCW 179
Cdd:pfam00146  92 VLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVEAQAGGW 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851  180 FVSVCFPLMICFFASCLAETIRTPFNFAEGESDLVSGfnFNVEYGAGGFTLIFLPsmpelflwEYLwdyfsleEILLIDI 259
Cdd:pfam00146 172 FIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAG--FHTEYSGMRFALFFLA--------EYA-------NMFLMSA 234

                         250       260
                  ....*....|....*....|...
gi 304322851  260 LYKIIfcFFLFYLSPWNFTSILM 282
Cdd:pfam00146 235 LAVTL--FLGGWLGPFPLPGLLW 255
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 22-233 5.12e-56

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 184.18  E-value: 5.12e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851  22 SVAFLTLFERSLLGYIHIRKGPNKVGYFGVSQPFSDALKLISKEQTYPILSNYFIYYFSPIFSFMISLIIWSVFPY--LT 99
Cdd:COG1005   25 LAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIPFgpGL 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 100 YLCSFMYGFLFFLCCISLNVYSTMIAGWSSNSNYSLIGSLRSVAQTISYEVSLALISLSLIFLVGGFSMFNFMNYQY-YC 178
Cdd:COG1005  105 VLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSEIVEAQAgGL 184

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 304322851 179 WFVSVCFPLMICFFASCLAETIRTPFNFAEGESDLVSGfnFNVEYGAGGFTLIFL 233
Cdd:COG1005  185 WFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAG--YHTEYSGMKFALFFL 237
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 22-311 3.42e-107

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 314.40  E-value: 3.42e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851  22 SVAFLTLFERSLLGYIHIRKGPNKVGYFGVSQPFSDALKLISKEQTYPILSNYFIYYFSPIFSFMISLIIWSVFPYLTYL 101
Cdd:MTH00193  18 SVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIYPYLFNL 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 102 CSFMYGFLFFLCCISLNVYSTMIAGWSSNSNYSLIGSLRSVAQTISYEVSLALISLSLIFLVGGFSMFNFMNYQYYCWFV 181
Cdd:MTH00193  98 ISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNLLDFMNYQKYIWFI 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 182 SVCFPLMICFFASCLAETIRTPFNFAEGESDLVSGfnFNVEYGAGGFTLIFLPSMPELFLWEYLWDYFSLEEILLIDILY 261
Cdd:MTH00193 178 FFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSG--FNVEYSSGGFALIFLAEYSSILFMSMLFVLMFLGGDLLSLLFY 255

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 304322851 262 -KIIFCFFLFYLSPWNFTSILMWKVDMFSLKEFTSFIFKFFNFFCGLKILL 311
Cdd:MTH00193 256 lKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 22-233 7.94e-88

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 265.36  E-value: 7.94e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851  22 SVAFLTLFERSLLGYIHIRKGPNKVGYFGVSQPFSDALKLISKEQTYPILSNYFIYYFSPIFSFMISLIIWSVFPYLTYL 101
Cdd:MTH00225  17 SVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLILWSLYPSMFSI 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 102 CSFMYGFLFFLCCISLNVYSTMIAGWSSNSNYSLIGSLRSVAQTISYEVSLALISLSLIFLVGGFSMFNFMNYQYYCWFV 181
Cdd:MTH00225  97 YSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNLFDFSYNQKYFWFM 176

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 304322851 182 SVCFPLMICFFASCLAETIRTPFNFAEGESDLVSGfnFNVEYGAGGFTLIFL 233
Cdd:MTH00225 177 FVLFPLFFCWMISMLAETNRAPFDFAEGESELVSG--FNIEYSSGGFALIFM 226
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 22-233 1.18e-78

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 241.70  E-value: 1.18e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851  22 SVAFLTLFERSLLGYIHIRKGPNKVGYFGVSQPFSDALKLISKEQTYPILSNYFIYYFSPIFSFMISLIIWSVFPYLTYL 101
Cdd:MTH00143  17 AVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPSYFSS 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 102 CSFMYGFLFFLCCISLNVYSTMIAGWSSNSNYSLIGSLRSVAQTISYEVSLALISLSLIFLVGGFSMFNFMNYQYYCWFV 181
Cdd:MTH00143  97 SYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQFSVWLG 176

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 304322851 182 SVCFPLMICFFASCLAETIRTPFNFAEGESDLVSGfnFNVEYGAGGFTLIFL 233
Cdd:MTH00143 177 FLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSG--FNVEYGGGGFALLFL 226
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 22-290 1.52e-74

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 231.71  E-value: 1.52e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851  22 SVAFLTLFERSLLGYIHIRKGPNKVGYFGVSQPFSDALKLISKEQTYPILSNYFIYYFSPIFSFMISLIIWSVFPYLTYL 101
Cdd:MTH00111  21 AVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALLLALTIWTPLPMPFPL 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 102 CSFMYGFLFFLCCISLNVYSTMIAGWSSNSNYSLIGSLRSVAQTISYEVSLALISLSLIFLVGGFSMFNFMNYQYYCWFV 181
Cdd:MTH00111 101 ADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSGGYTLQTLATTQEPLWLI 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 182 SVCFPLMICFFASCLAETIRTPFNFAEGESDLVSGfnFNVEYGAGGFTLiflpsmpeLFLWEYlwdyfslEEILLIDILY 261
Cdd:MTH00111 181 FSSWPLAMMWYISTLAETNRAPFDLTEGESELVSG--FNVEYAAGPFAL--------FFLAEY-------ANILLMNTLT 243

                        250       260       270
                 ....*....|....*....|....*....|
gi 304322851 262 KIIF-CFFLFYLSPWNFTSILMWKVDMFSL 290
Cdd:MTH00111 244 TILFlNPSTLNLPPELFTINLMTKTLLLTS 273
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 22-290 2.54e-73

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 228.74  E-value: 2.54e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851  22 SVAFLTLFERSLLGYIHIRKGPNKVGYFGVSQPFSDALKLISKEQTYPILSNYFIYYFSPIFSFMISLIIWSVFPYLTYL 101
Cdd:MTH00071  21 AVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMALTLALIIWTPLPMPNNL 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 102 CSFMYGFLFFLCCISLNVYSTMIAGWSSNSNYSLIGSLRSVAQTISYEVSLALISLSLIFLVGGFSMFNFMNYQYYCWFV 181
Cdd:MTH00071 101 SNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGGFSLMNFNTTQEFMWLI 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 182 SVCFPLMICFFASCLAETIRTPFNFAEGESDLVSGfnFNVEYGAGGFTLIFLPsmpelflwEYlwdyfslEEILLIDILY 261
Cdd:MTH00071 181 IPAWPMAAMWFISTLAETNRAPFDLTEGESELVSG--FNVEYAGGPFALFFLA--------EY-------ANILMMNTLS 243

                        250       260       270
                 ....*....|....*....|....*....|
gi 304322851 262 KIIFC-FFLFYLSPWNFTSILMWKVDMFSL 290
Cdd:MTH00071 244 TILFLgSTYNHLQPELSTMNLMIKASILSM 273
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 23-233 1.04e-69

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 219.01  E-value: 1.04e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851  23 VAFLTLFERSLLGYIHIRKGPNKVGYFGVSQPFSDALKLISKEQTYPILSNYFIYYFSPIFSFMISLIIWSVFPYLTYLC 102
Cdd:MTH00218  19 VAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLALLLWMPLPLPFSLI 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 103 SFMYGFLFFLCCISLNVYSTMIAGWSSNSNYSLIGSLRSVAQTISYEVSLALISLSLIFLVGGFSMFNFMNYQYYCWFVS 182
Cdd:MTH00218  99 NLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSLEGFNLTQETIWLLI 178

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 304322851 183 VCFPLMICFFASCLAETIRTPFNFAEGESDLVSGfnFNVEYGAGGFTLIFL 233
Cdd:MTH00218 179 PEWPLALMWFISTLAETNRAPFDLTEGESELVSG--FNVEYSGGPFALFFL 227
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 22-273 5.87e-67

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 211.91  E-value: 5.87e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851  22 SVAFLTLFERSLLGYIHIRKGPNKVGYFGVSQPFSDALKLISKEQTYPILSNYFIYYFSPIFSFMISLIIWSVFPYLTYL 101
Cdd:MTH00195  18 AVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALALILWVPIPSPFGF 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 102 CSFMYGFLFFLCCISLNVYSTMIAGWSSNSNYSLIGSLRSVAQTISYEVSLALISLSLIFLVGGFSMFNFMNYQYYCWFV 181
Cdd:MTH00195  98 SSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDFTIMVISQGFSWVI 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 182 SVCFPLMICFFASCLAETIRTPFNFAEGESDLVSGfnFNVEYGAGGFTLIFLPSMPELFLWEYLWDYFSLEEILLIDILY 261
Cdd:MTH00195 178 LLCPPISFMWYVSTLAETNRAPFDFAEGESELVSG--FNVEYAGGPFALIFMAEYSNIIFMSVLTTILFLGGGGTIIVAL 255

                        250
                 ....*....|..
gi 304322851 262 KIIFCFFLFYLS 273
Cdd:MTH00195 256 KSLFLSFCFLWV 267
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 22-233 1.51e-66

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 211.02  E-value: 1.51e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851  22 SVAFLTLFERSLLGYIHIRKGPNKVGYFGVSQPFSDALKLISKEQTYPILSNYFIYYFSPIFSFMISLIIWSVFPYLTYL 101
Cdd:MTH00104  16 AVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLALTMWIPLPMPYPL 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 102 CSFMYGFLFFLCCISLNVYSTMIAGWSSNSNYSLIGSLRSVAQTISYEVSLALISLSLIFLVGGFSMFNFMNYQYYCWFV 181
Cdd:MTH00104  96 INMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLITTQEHLWLI 175

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 304322851 182 SVCFPLMICFFASCLAETIRTPFNFAEGESDLVSGfnFNVEYGAGGFTLIFL 233
Cdd:MTH00104 176 FPSWPLAMMWFISTLAETNRAPFDLTEGESELVSG--FNVEYAAGPFALFFM 225
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 22-233 6.44e-66

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 209.83  E-value: 6.44e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851  22 SVAFLTLFERSLLGYIHIRKGPNKVGYFGVSQPFSDALKLISKEQTYPILSNYFIYYFSPIFSFMISLIIWSVFPYLTYL 101
Cdd:MTH00040  20 AVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLFLALLLWSLIPVPTPT 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 102 CSFMYGFLFFLCCISLNVYSTMIAGWSSNSNYSLIGSLRSVAQTISYEVSLALISLSLIFLVGGFSMFNFMNYQYYCWFV 181
Cdd:MTH00040 100 LNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSFSLSSISNSQNGSWLL 179

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 304322851 182 SVCFPLMICFFASCLAETIRTPFNFAEGESDLVSGfnFNVEYGAGGFTLIFL 233
Cdd:MTH00040 180 FPCLPLFYIWFISTLAETNRAPFDLTEGESELVSG--YNVEYAGGPFALFFI 229
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 22-290 2.22e-64

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 205.61  E-value: 2.22e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851  22 SVAFLTLFERSLLGYIHIRKGPNKVGYFGVSQPFSDALKLISKEQTYPILSNYFIYYFSPIFSFMISLIIWSVFPYLTYL 101
Cdd:MTH00134  22 AVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALTLALTLWAPMPMPYPV 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 102 CSFMYGFLFFLCCISLNVYSTMIAGWSSNSNYSLIGSLRSVAQTISYEVSLALISLSLIFLVGGFSMFNFMNYQYYCWFV 181
Cdd:MTH00134 102 TDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQTFNTAQESIWLL 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 182 SVCFPLMICFFASCLAETIRTPFNFAEGESDLVSGfnFNVEYGAGGFTLIFLPsmpelflwEYlwdyfslEEILLIDILY 261
Cdd:MTH00134 182 LPAWPLAAMWYISTLAETNRAPFDLTEGESELVSG--FNVEYAGGPFALFFLA--------EY-------ANILLMNTLS 244

                        250       260       270
                 ....*....|....*....|....*....|
gi 304322851 262 KIIFCFFLFYLSPWNFTSI-LMWKVDMFSL 290
Cdd:MTH00134 245 AILFLGASHIPTLPELTTInLMTKAALLSV 274
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 22-233 3.63e-63

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 202.32  E-value: 3.63e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851  22 SVAFLTLFERSLLGYIHIRKGPNKVGYFGVSQPFSDALKLISKEQTYPILSNYFIYYFSPIFSFMISLIIWSVFPYLTYL 101
Cdd:MTH00010  19 AMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILALLLWSLYPHKHPS 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 102 CSFMYGFLFFLCCISLNVYSTMIAGWSSNSNYSLIGSLRSVAQTISYEVSLALISLSLIFLVGGFSMFNFMNYQYYcWFV 181
Cdd:MTH00010  99 FFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSFSKIIMSQYS-WIL 177

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 304322851 182 SVCFPLMICFFASCLAETIRTPFNFAEGESDLVSGfnFNVEYGAGGFTLIFL 233
Cdd:MTH00010 178 LMIIPLTVSWFITNLAETNRTPFDFAEGESELVSG--FNVEYSSGLFALIFM 227
NADHdh pfam00146
NADH dehydrogenase;
22-282 9.25e-63

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 200.78  E-value: 9.25e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851   22 SVAFLTLFERSLLGYIHIRKGPNKVGYFGVSQPFSDALKLISKEQTYPILSNYFIYYFSPIFSFMISLIIWSVFPY--LT 99
Cdd:pfam00146  12 AVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVIPFgpGL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851  100 YLCSFMYGFLFFLCCISLNVYSTMIAGWSSNSNYSLIGSLRSVAQTISYEVSLALISLSLIFLVGGFSMFNFMNYQYYCW 179
Cdd:pfam00146  92 VLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVEAQAGGW 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851  180 FVSVCFPLMICFFASCLAETIRTPFNFAEGESDLVSGfnFNVEYGAGGFTLIFLPsmpelflwEYLwdyfsleEILLIDI 259
Cdd:pfam00146 172 FIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAG--FHTEYSGMRFALFFLA--------EYA-------NMFLMSA 234

                         250       260
                  ....*....|....*....|...
gi 304322851  260 LYKIIfcFFLFYLSPWNFTSILM 282
Cdd:pfam00146 235 LAVTL--FLGGWLGPFPLPGLLW 255
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 22-233 5.12e-56

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 184.18  E-value: 5.12e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851  22 SVAFLTLFERSLLGYIHIRKGPNKVGYFGVSQPFSDALKLISKEQTYPILSNYFIYYFSPIFSFMISLIIWSVFPY--LT 99
Cdd:COG1005   25 LAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIPFgpGL 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 100 YLCSFMYGFLFFLCCISLNVYSTMIAGWSSNSNYSLIGSLRSVAQTISYEVSLALISLSLIFLVGGFSMFNFMNYQY-YC 178
Cdd:COG1005  105 VLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSEIVEAQAgGL 184

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 304322851 179 WFVSVCFPLMICFFASCLAETIRTPFNFAEGESDLVSGfnFNVEYGAGGFTLIFL 233
Cdd:COG1005  185 WFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAG--YHTEYSGMKFALFFL 237
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 22-270 2.83e-54

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 179.92  E-value: 2.83e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851  22 SVAFLTLFERSLLGYIHIRKGPNKVGYFGVSQPFSDALKLISKEQTYPILSNYFIYYFSPIFSFMISLIIWSVFPYLT-- 99
Cdd:MTH00054  18 SIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFIAWGVIPYGEgv 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 100 YLCSFMYGFLFFLCCISLNVYSTMIAGWSSNSNYSLIGSLRSVAQTISYEVSLALISLSLIFLVGGFSMFNFMNYQYYCW 179
Cdd:MTH00054  98 VLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLNLTEIVLAQKNIW 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 180 FVSVCFPLMICFFASCLAETIRTPFNFAEGESDLVSGfnFNVEYGAGGFTLIFLPSMPELFLWEYL--------WDYFSL 251
Cdd:MTH00054 178 FIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSG--FNVEYSSMSFALFFLAEYCHIILMSTFgvilflggWLVISG 255

                        250       260
                 ....*....|....*....|..
gi 304322851 252 EEILLIDILY---KIIFCFFLF 270
Cdd:MTH00054 256 PTSYFSNFVWfgiKIALIIFLF 277
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
22-270 5.04e-54

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 178.85  E-value: 5.04e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851  22 SVAFLTLFERSLLGYIHIRKGPNKVGYFGVSQPFSDALKLISKEQTYPILSNYFIYYFSPIFSFMISLIIWSVFPYL-TY 100
Cdd:PRK06076  26 CVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPAFLAWAVIPFGpEL 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 101 LCSFM-YGFLFFLCCISLNVYSTMIAGWSSNSNYSLIGSLRSVAQTISYEVSLALISLSLIFLVGGFSMFNFMNYQYYCW 179
Cdd:PRK06076 106 VIADLnVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLNLSDIVEAQFLSW 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 180 FVSVCFPLMICFFASCLAETIRTPFNFAEGESDLVSGfnFNVEYGAGGFTLIFLPS----------MPELFLWEYLWDYF 249
Cdd:PRK06076 186 NIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAG--YHTEYSGMKFGLFFLGEyinmilvsalITTLFLGGWLPPFP 263

                        250       260
                 ....*....|....*....|..
gi 304322851 250 SLEEIL-LIDILYKIIFCFFLF 270
Cdd:PRK06076 264 LGGGIPgAIWFVLKVAFFVFLF 285
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 22-233 5.36e-53

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 176.46  E-value: 5.36e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851  22 SVAFLTLFERSLLGYIHIRKGPNKVGYFGVSQPFSDALKLISKEQTYPILSNYFIYYFSPIFSFMISLIIWSVFPYL--T 99
Cdd:MTH00216  22 AVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTLALIVWGVIPYErgV 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 100 YLCSFMYGFLFFLCCISLNVYSTMIAGWSSNSNYSLIGSLRSVAQTISYEVSLALISLSLIFLVGGFSMFNFMNYQY-YC 178
Cdd:MTH00216 102 LISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGSLSITEIVLAQNnGI 181

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 304322851 179 WFVSVCFPLMICFFASCLAETIRTPFNFAEGESDLVSGfnFNVEYGAGGFTLIFL 233
Cdd:MTH00216 182 WFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSG--YNVEYASMSFALFFL 234
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 22-251 2.72e-46

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 159.41  E-value: 2.72e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851  22 SVAFLTLFERSLLGYIHIRKGPNKVGYFGVSQPFSDALKLISKEQTYPILSNYFIYYFSPIFSFMISLIIWSVFPYL--T 99
Cdd:MTH00029  23 SVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAILAWAIVTMDqgV 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 100 YLCSFMYGFLFFLCCISLNVYSTMIAGWSSNSNYSLIGSLRSVAQTISYEVSLALISLSLIFLVGGFSMFNFMNYQYYCW 179
Cdd:MTH00029 103 FLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLNISEIVISQRSVW 182

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 304322851 180 FVSVCFPLMICFFASCLAETIRTPFNFAEGESDLVSGfnFNVEYGAGGFTLIFLPSMPELFLWEYLWDYFSL 251
Cdd:MTH00029 183 LIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSG--FNVEYSSLSFALFFLAEYSNIILMSCMMTIFFL 252
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 22-233 8.98e-42

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 146.20  E-value: 8.98e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851  22 SVAFLTLFERSLLGYIHIRKGPNKVGYFGVSQPFSDALKLISKEQTYPILSNYFIYYFSPIFSFMISLIIWSVFPYLTYL 101
Cdd:MTH00090  12 AIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEWFVLPYFFDF 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 102 CSFMYGFLFFLCCISLNVYSTMIAGWSSNSNYSLIGSLRSVAQTISYEVSLALISLSLIFLVGGFSMFNFMNYqyycwfv 181
Cdd:MTH00090  92 LSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVSSFSL------- 164

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 304322851 182 sVCFPLMICFFASCLAETIRTPFNFAEGESDLVSGfnFNVEYGAGGFTLIFL 233
Cdd:MTH00090 165 -SLFVIYLPFLIMIIAELNRAPFDFSEGESELVSG--YNVEYSSVAFVLLFL 213
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 23-232 2.41e-27

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 108.09  E-value: 2.41e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851  23 VAFLTLFERSLLGYIHIRKGPNKVGYFGVSQPFSDALKLISKEQTYPILSNYFIYYFSPIFSFMISLIIWSVFPYLTYLC 102
Cdd:MTH00058  18 VAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSYYSGS 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 103 SFMYGFLFFLCCISLNVYSTMIAGWSSNSNYSLIGSLRSVAQTISYEVSLALIslsLIFLVGGFSMFNFMNYQYYCWFVS 182
Cdd:MTH00058  98 YSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCI---VIFCGLCYGSYSLVDFYYSGWLSV 174

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 304322851 183 VCFPLM-ICFFASCLAETIRTPFNFAEGESDLVSGfnFNVEYGAGGFTLIF 232
Cdd:MTH00058 175 LLFPLIyILWLVCILCETNRTPFDYGESESELVSG--FNTEYSGIYFTCLF 223
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
25-241 1.50e-14

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 72.52  E-value: 1.50e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851  25 FLTLFERSLLGYIHIRKGPnkvgyfGVSQPFSDALKLISKEQTYPILSNyFIYYFSPIFSFMISLIIWSVFPYLTYLC-- 102
Cdd:COG0650   20 LLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETAS-WLFRAAPYVALAAMLLAALLVPVLTTGPpl 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322851 103 SFMYGFLFFLCCISLNVYSTMIAGWSSNSNYSLIGSLRSVAQTISYEVSLALISLSLIFLVGGFSMFNFMNYQYYCWFVS 182
Cdd:COG0650   93 SFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAGSTSLSDIVAYQAAHGPLL 172

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 304322851 183 ---VCFPLMICFFASCLAETIRTPFNFAEGESDLVSGfnFNVEYGAGGFTLIFLPSMPELFL 241
Cdd:COG0650  173 lspSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEG--MLLEYSGRHLALLELAAALKLFV 232
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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