|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-339 |
1.29e-95 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 287.10 E-value: 1.29e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 1 MTKNLMKLLFLSTMLVGTILSFSSNSWFGVWMGLEINLLSFIPLLTNNKSMMMNESSIKYFIVQALASTMLLFSILMIQM 80
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 81 NHPIgweSDIIASTMITSSLMLKIGAAPFHFWFPEVMMMSSWTNCFILMTMQKIAPMAVMSYCIHMNIFtMTIIILSICV 160
Cdd:MTH00160 81 NLML---FNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFI-IIIIILSAII 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 161 GAVGGINQTSLYQILAYSSISHLGWMISSMLISENMWEMYFMIYSILSAIMIMIFNKTKSSFVTQLFLSNNIKIEIKFMS 240
Cdd:MTH00160 157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 241 FITLLSLGGIPPFIGFLPKWMVMQTMIENKLSSIMTIMVMTTLITLYYYMRIGFSALIINYTEMTWTMNKIKVKQNLLFM 320
Cdd:MTH00160 237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316
|
330
....*....|....*....
gi 470235843 321 IMVMTSMMGLIFTSILILN 339
Cdd:MTH00160 317 FLSFISLFGLILSSLLFLL 335
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
8-292 |
5.54e-24 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 102.12 E-value: 5.54e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 8 LLFLSTmlVGTILSFSSNSWFGVWMGLEINLLSFIPLL----TNNKSmmmNESSIKYFIVQALASTMLLFSILMI----- 78
Cdd:COG1007 107 LLLFAT--LGMMLMASANDLLTLFLGLELLSLSLYVLVafrrDDRRS---SEAALKYFLLGALSSGFLLYGISLLygatg 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 79 -------------QMNHPIGWesdIIASTMITSSLMLKIGAAPFHFWFPEVMMMSSWTNCFILMTMQKIAPMAVM----- 140
Cdd:COG1007 182 slnlagiaaalaaGGANSPLL---LLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllv 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 141 ----SYCIHMNIFTMTIIILSICVGAVGGINQTSLYQILAYSSISHLGWM-----------ISSMLIsenmwemYFMIYS 205
Cdd:COG1007 259 eafpGLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLllglaagtplgVSAALF-------YLLAYL 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 206 I--LSAIMIMIFNKTKSSFVTQL-----------FLSnnikieikFMSFITLLSLGGIPPFIGFLPKWMVMQTMIENKLS 272
Cdd:COG1007 332 FmnLGAFAVILLLSRKGGEAEEIedlaglarrspLLA--------LAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLY 403
|
330 340
....*....|....*....|
gi 470235843 273 SIMTIMVMTTLITLYYYMRI 292
Cdd:COG1007 404 WLAVIAVLNSVISAYYYLRV 423
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
24-282 |
7.65e-24 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 98.92 E-value: 7.65e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 24 SNSWFGVWMGLEINLLSFIPLLT-NNKSMMMNESSIKYFIVQALASTMLLFSILMI--------------QMNHPIGWES 88
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdelskALTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 89 DIIASTMITSSLMLKIGAAPFHFWFPEVMMMSSWTN-CFILMTMQKIAPMAVM-------SYCIHMNIFTMTIIILSICV 160
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVsALLAATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 161 GAVGGINQTSLYQILAYSSISHLGWMISSMLISENMWEMYFMIYSILSAIM---------IMIFNKTKSSFVTQLF-LSN 230
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFsaglflcagSVIYRRVHTRNIRDYGgLAK 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 470235843 231 NIKIeIKFMSFITLLSLGGIPPFIGFLPKWMVMQTMIENKLSSIMTIMVMTT 282
Cdd:pfam00361 241 TMPI-LALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
15-292 |
5.25e-18 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 84.61 E-value: 5.25e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 15 LVGTILSFSSNSWFGVWMGLEINLLSFIPLLT-NNKSMMMNESSIKYFIVQALASTMLLFSILMI--------------- 78
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgslnfedlllf 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 79 QMNHPIGWESDIIASTMITSSLMLKIGAAPFHFWFPEVMMMSSWTNCFILMTMQKIAPMAVM---------SYCIHMNIF 149
Cdd:TIGR01770 192 LSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyilfGFSEAWQIF 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 150 TMTIIILSICVGAVGGINQTSLYQILAYSSISHLGW-MISSMLISENMWE---MYFMIYSILS----AIMIMIFNKTKSS 221
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSlgafGVLSLLRSYKDEW 351
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 470235843 222 FVTQLFLSNNIKIE--IKFMSFITLLSLGGIPPFIGFLPKWMVMQTMIENKLSSIMTIMVMTTLITLYYYMRI 292
Cdd:TIGR01770 352 IEYISDFAGLFKTNpiLAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-339 |
1.29e-95 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 287.10 E-value: 1.29e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 1 MTKNLMKLLFLSTMLVGTILSFSSNSWFGVWMGLEINLLSFIPLLTNNKSMMMNESSIKYFIVQALASTMLLFSILMIQM 80
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 81 NHPIgweSDIIASTMITSSLMLKIGAAPFHFWFPEVMMMSSWTNCFILMTMQKIAPMAVMSYCIHMNIFtMTIIILSICV 160
Cdd:MTH00160 81 NLML---FNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFI-IIIIILSAII 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 161 GAVGGINQTSLYQILAYSSISHLGWMISSMLISENMWEMYFMIYSILSAIMIMIFNKTKSSFVTQLFLSNNIKIEIKFMS 240
Cdd:MTH00160 157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 241 FITLLSLGGIPPFIGFLPKWMVMQTMIENKLSSIMTIMVMTTLITLYYYMRIGFSALIINYTEMTWTMNKIKVKQNLLFM 320
Cdd:MTH00160 237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316
|
330
....*....|....*....
gi 470235843 321 IMVMTSMMGLIFTSILILN 339
Cdd:MTH00160 317 FLSFISLFGLILSSLLFLL 335
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
5-337 |
2.40e-61 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 199.28 E-value: 2.40e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 5 LMKLLFLSTMLVGTILSFSSNSWFGVWMGLEINLLSFIPLLTNNKSMMMNESSIKYFIVQALASTMLLFSILM------- 77
Cdd:MTH00112 4 HAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTnawntgq 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 78 ---IQMNHPIgwesdiiASTMITSSLMLKIGAAPFHFWFPEVMMMSSWTNCFILMTMQKIAPMAVMsYCIHMNI---FTM 151
Cdd:MTH00112 84 wdiTQLTNPT-------SCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLL-LMTSNSLnptLLL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 152 TIIILSICVGAVGGINQTSLYQILAYSSISHLGWMISSMLISENMWEMYFMIYSILSAIMIMIFNKTKSSFVTQLFLSNN 231
Cdd:MTH00112 156 TLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWT 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 232 IKIEIKFMSFITLLSLGGIPPFIGFLPKWMVMQTMIENKLSSIMTIMVMTTLITLYYYMRIGFSALIINYTEMTWTMNK- 310
Cdd:MTH00112 236 KSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKw 315
|
330 340
....*....|....*....|....*...
gi 470235843 311 -IKVKQNLLFMIMVMTSMMGLIFTSILI 337
Cdd:MTH00112 316 rTKPKKNTLTATLTTLSTLLLPLSPMIL 343
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
8-338 |
1.08e-60 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 197.76 E-value: 1.08e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 8 LLFLSTMLVGTILSFSSNSWFGVWMGLEINLLSFIPLLTNNKSMMMNESSIKYFIVQALASTMLLFSILMIQMNH---PI 84
Cdd:MTH00105 7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSgqwTI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 85 GWESDIIASTMITSSLMLKIGAAPFHFWFPEVMMMSSWTNCFILMTMQKIAPMAVM---SYCIHMNIfTMTIIILSICVG 161
Cdd:MTH00105 87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILyqiSPSINPNL-LLTLAILSILIG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 162 AVGGINQTSLYQILAYSSISHLGWMISSMLISENMWEMYFMIYSILSAIMIMIFNKTKSSFVTQLFLSNNIKIEIKFMSF 241
Cdd:MTH00105 166 GWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLIL 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 242 ITLLSLGGIPPFIGFLPKWMVMQTMIENKLSSIMTIMVMTTLITLYYYMRIGFSALI-----INYTEMTWTMNKIkvKQN 316
Cdd:MTH00105 246 LTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLtmfpsTNNMKMKWQFENT--KPM 323
|
330 340
....*....|....*....|..
gi 470235843 317 LLFMIMVMTSMMGLIFTSILIL 338
Cdd:MTH00105 324 TLLPTLIILSTMLLPLTPMLSI 345
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
9-308 |
2.25e-60 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 196.95 E-value: 2.25e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 9 LFLSTMLVGTILSFSSNSWFGVWMGLEINLLSFIPLLTNNKSMMMNESSIKYFIVQALASTMLLFSIL----------MI 78
Cdd:MTH00135 8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTtnawltgqwdIQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 79 QMNHPIgwesdiiASTMITSSLMLKIGAAPFHFWFPEVMMMSSWTNCFILMTMQKIAPMAVMsYCIHMNIFTMTII--IL 156
Cdd:MTH00135 88 QMSHPL-------PTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALI-LQIAPTNPTLLITlgLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 157 SICVGAVGGINQTSLYQILAYSSISHLGWMISSMLISENMWEMYFMIYSILSAIMIMIFNKTKSSFVTQLFLSNNIKIEI 236
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 470235843 237 KFMSFITLLSLGGIPPFIGFLPKWMVMQTMIENKLSSIMTIMVMTTLITLYYYMRIGFSaliinyteMTWTM 308
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYA--------MTLTI 303
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
10-338 |
4.47e-55 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 183.20 E-value: 4.47e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 10 FLSTMLVGTILSFSSNSWFGVWMGLEINLLSFIPLLTNNKSMMMNESSIKYFIVQALASTMLLFSILM----------IQ 79
Cdd:MTH00070 9 LLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTInawftgewtiMN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 80 MNHPIgwesdiiASTMITSSLMLKIGAAPFHFWFPEVMMMSSWTNCFILMTMQKIAPMAVMSYCIHMNIFTMTII--ILS 157
Cdd:MTH00070 89 MQTPL-------PTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIImgLLS 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 158 ICVGAVGGINQTSLYQILAYSSISHLGWMISSMLISENMWEMYFMIYSILSAIMIMIFNKTKSSFVTQLFLSNNIKIEIK 237
Cdd:MTH00070 162 TLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLT 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 238 FMSFITLLSLGGIPPFIGFLPKWMVMQTMIENKLSSIMTIMVMTTLITLYYYMRIGFSALIINY--TEMTWTMNKIKVKQ 315
Cdd:MTH00070 242 SMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSpnTSNSKLYWRFKNKT 321
|
330 340
....*....|....*....|...
gi 470235843 316 NLLFMIMVMTSMMGLIFTSILIL 338
Cdd:MTH00070 322 NNLLSLTIILSLMLLPITPTILN 344
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
5-338 |
2.81e-53 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 178.62 E-value: 2.81e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 5 LMKLLFLSTMLVGTILSFSSNSWFGVWMGLEINLLSFIPLLTNNKSMMMNESSIKYFIVQALASTMLLFSILMIQM---N 81
Cdd:MTH00200 4 LILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWtsgQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 82 HPIGWESDIIASTMITSSLMLKIGAAPFHFWFPEVMMMSSWTNCFILMTMQKIAPMAVMS--YCIHMNIFTMTIIILSIC 159
Cdd:MTH00200 84 WGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIqlAPALNSNILLLLGLLSVL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 160 VGAVGGINQTSLYQILAYSSISHLGWMISSMLISENMWEMYFMIYSILSAIMIMIFNKTKSSFVTQLFLSNNIKIEIKFM 239
Cdd:MTH00200 164 VGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSML 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 240 SFITLLSLGGIPPFIGFLPKWMVMQTMIENKLSSIMTIMVMTTLITLYYYMRIGFSALIINYTEMTWTMNKIKVKQ--NL 317
Cdd:MTH00200 244 LGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSnsNL 323
|
330 340
....*....|....*....|.
gi 470235843 318 LFMIMVMTSMMGLIFTSILIL 338
Cdd:MTH00200 324 LVGLLLLLSILGLPLTPQLLF 344
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
8-295 |
4.04e-53 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 178.20 E-value: 4.04e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 8 LLFLSTMLVGTILSFSSNSWFGVWMGLEINLLSFIPLLTNNKSMMMNESSIKYFIVQALASTMLLFSILMIQMNHP---I 84
Cdd:MTH00041 7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGswsI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 85 GWESDIIASTMITSSLMLKIGAAPFHFWFPEVMMMSSWTNCFILMTMQKIAPMAVMSYCIHMNIFTMTII--ILSICVGA 162
Cdd:MTH00041 87 NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILcgILSVLVGG 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 163 VGGINQTSLYQILAYSSISHLGWMISSMLISENMWEMYFMIYSILSAIMIMIFNKTKSSFVTQLFLSNNIKIEIKFMSFI 242
Cdd:MTH00041 167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFIL 246
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 470235843 243 TLLSLGGIPPFIGFLPKWMVMQTMIENKLSSIMTIMVMTTLITLYYYMRIGFS 295
Cdd:MTH00041 247 SILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFN 299
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
3-338 |
5.75e-52 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 174.69 E-value: 5.75e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 3 KNLMKLLFLSTMLVGTILSFSSNSWFGVWMGLEINLLSFIPLLTNNKSMMMNESSIKYFIVQALASTMLLFSILMIQMNH 82
Cdd:MTH00144 2 SSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 83 PIGWesdiiASTMITSSLMLKIGAAPFHFWFPEVMMMSSWTNCFILMTMQKIAPMAVMSYCIHMNIFTMTIIILSI---C 159
Cdd:MTH00144 82 FSWF-----SMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVISVlsaL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 160 VGAVGGINQTSLYQILAYSSISHLGWMISSMLISENMWEMYFMIYSILSAIMIMIFNKTKSSFVTQLFLSNNIKIEiKFM 239
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKT-GLS 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 240 SFITLLSLGGIPPFIGFLPKWMVMQTMIENKLSSIMTIMVMTTLITLYYYMRIGFSALIinytemTWTMNKIKVKQNLLF 319
Cdd:MTH00144 236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL------SSSKSKKSNSSKVLN 309
|
330
....*....|....*....
gi 470235843 320 MIMVMTSMMGLIFTSILIL 338
Cdd:MTH00144 310 SSIISLNLLGGLLFLLLYL 328
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
9-337 |
6.32e-48 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 164.07 E-value: 6.32e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 9 LFLSTMLVGTILSFSSNSWFGVWMGLEINLLSFIPLLTNNKSMMMNESSIKYFIVQALASTMLLFSILMIQMNHPIgwes 88
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYL---- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 89 DIIASTMITSSLMLKIGAAPFHFWFPEVMMMSSWTNCFILMTMQKIAPMAVMSYCIHMNIFTMTIIILSICVGAVGGINQ 168
Cdd:MTH00197 78 SLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMNQ 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 169 TSLYQILAYSSISHLGWMISSMLISENMWEMYFMIYSILSAIMIMIFNKTKSSFVTQLFLSNNIKIEIKFMSFITLLSLG 248
Cdd:MTH00197 158 SNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLG 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 249 GIPPFIGFLPKWMVMQTMIENKLSSIMTIMVMTTLITLYYYMRIGFSALIINYTEMTWTMnkiKVKQNLLFMIMVMTSMM 328
Cdd:MTH00197 238 GLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLM---KINLLYSGLFILLMMML 314
|
....*....
gi 470235843 329 GLIFTSILI 337
Cdd:MTH00197 315 PLLMIFTMI 323
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
8-331 |
5.28e-43 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 151.47 E-value: 5.28e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 8 LLFLSTMLVGTILSFSSNSWFGVWMGLEINLLSFIPLLTNNKSMMMNESSIKYFIVQALASTMLLFSILMIQMNHPIgwe 87
Cdd:MTH00011 9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSL--- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 88 SDIIASTMITSSLMLKIGAAPFHFWFPEVMMMSSWTNCFILMTMQKIAPMAVMSYCIHMNIFTMTIII--LSICVGAVGG 165
Cdd:MTH00011 86 LKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMaaMSALAGGLGG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 166 INQTSLYQILAYSSISHLGWMISSMLISENMWEMYFMIYSILSAIMIMIFNKTKSSFVTQLFLSNNIKIEIKFMSFITLL 245
Cdd:MTH00011 166 MNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLL 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 246 SLGGIPPFIGFLPKWMVMQTMIENKLSSIMTIMVMTTLITLYYYMRIGFSALIINYTEMTWTMNKIKVKqnLLFMIMVMT 325
Cdd:MTH00011 246 SLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLKSAPYEPK--TKILISMCT 323
|
....*.
gi 470235843 326 SMMGLI 331
Cdd:MTH00011 324 LSLGLI 329
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
15-292 |
9.51e-25 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 102.80 E-value: 9.51e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 15 LVGTILSFSSNSWFGVWMGLEINLLSFIPLLTNNK-SMMMNESSIKYFIVQALASTMLLFSI----------------LM 77
Cdd:MTH00196 3 ALGILCLISSSNWLSVYLAIELQTLSLFILIAQNRgSGYSAEAGLKYFVLGALSSGLFLFGCallcgttgglhlsyinLV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 78 IQMNHPIGWESDIIASTMITSSLMLKIGAAPFHFWFPEVMMMSSWTNCFILMTMQKIAPMAVM-SYCIHMNIFtMTIIIL 156
Cdd:MTH00196 83 LNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILvSIGLNVNIL-LIGGLF 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 157 SICVGAVGGINQTSLYQILAYSSISHLGWMISSM----LISENMWEMYFMIY---SILSAIMIMIFNKTKSSFVTQLFLS 229
Cdd:MTH00196 162 SLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYiimSICVFSIILALNVYKNLIIEFSGLS 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 470235843 230 NNIKIeIKFMSFITLLSLGGIPPFIGFLPKWMVMQTMIENKLSSIMTIMVMTTLITLYYYMRI 292
Cdd:MTH00196 242 RRLPI-LAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
8-292 |
5.54e-24 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 102.12 E-value: 5.54e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 8 LLFLSTmlVGTILSFSSNSWFGVWMGLEINLLSFIPLL----TNNKSmmmNESSIKYFIVQALASTMLLFSILMI----- 78
Cdd:COG1007 107 LLLFAT--LGMMLMASANDLLTLFLGLELLSLSLYVLVafrrDDRRS---SEAALKYFLLGALSSGFLLYGISLLygatg 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 79 -------------QMNHPIGWesdIIASTMITSSLMLKIGAAPFHFWFPEVMMMSSWTNCFILMTMQKIAPMAVM----- 140
Cdd:COG1007 182 slnlagiaaalaaGGANSPLL---LLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllv 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 141 ----SYCIHMNIFTMTIIILSICVGAVGGINQTSLYQILAYSSISHLGWM-----------ISSMLIsenmwemYFMIYS 205
Cdd:COG1007 259 eafpGLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLllglaagtplgVSAALF-------YLLAYL 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 206 I--LSAIMIMIFNKTKSSFVTQL-----------FLSnnikieikFMSFITLLSLGGIPPFIGFLPKWMVMQTMIENKLS 272
Cdd:COG1007 332 FmnLGAFAVILLLSRKGGEAEEIedlaglarrspLLA--------LAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLY 403
|
330 340
....*....|....*....|
gi 470235843 273 SIMTIMVMTTLITLYYYMRI 292
Cdd:COG1007 404 WLAVIAVLNSVISAYYYLRV 423
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
24-282 |
7.65e-24 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 98.92 E-value: 7.65e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 24 SNSWFGVWMGLEINLLSFIPLLT-NNKSMMMNESSIKYFIVQALASTMLLFSILMI--------------QMNHPIGWES 88
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdelskALTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 89 DIIASTMITSSLMLKIGAAPFHFWFPEVMMMSSWTN-CFILMTMQKIAPMAVM-------SYCIHMNIFTMTIIILSICV 160
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVsALLAATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 161 GAVGGINQTSLYQILAYSSISHLGWMISSMLISENMWEMYFMIYSILSAIM---------IMIFNKTKSSFVTQLF-LSN 230
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFsaglflcagSVIYRRVHTRNIRDYGgLAK 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 470235843 231 NIKIeIKFMSFITLLSLGGIPPFIGFLPKWMVMQTMIENKLSSIMTIMVMTT 282
Cdd:pfam00361 241 TMPI-LALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
17-292 |
1.44e-23 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 100.86 E-value: 1.44e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 17 GTILSFSSNSWFGVWMGLEINLLS-FIPLLTNNKSMMMNESSIKYFIVQALASTMLLFSILM---------IQMNHPIGW 86
Cdd:MTH00199 109 GSLLLVSSINWLSIYLAIELQTLTlFILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALlygltgetsIQGINSILT 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 87 ESdiIASTMITSSLMLKIGAAPFHFWFPEVMMMSSWTNCFILMTMQKIAPMAVMSYCIHMNIFTMTIIILSICVGAVGGI 166
Cdd:MTH00199 189 GD--VGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIYGAIGAL 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 167 NQTSLYQILAYSSISHLGWMISSMLISENMWEMYFMIYSILSAIM-IMIFnktksSFVTQLFLSNNIKIEIKFMS----- 240
Cdd:MTH00199 267 NQTKIKRLLAYSGIGHMGFILFGVAIGSFESIQASLIYMIIYVIMsICSF-----SIILSLKLTKGLIVEVSGLSrknpv 341
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 470235843 241 -----FITLLSLGGIPPFIGFLPKWMVMQTMIENKLSSIMTIMVMTTLITLYYYMRI 292
Cdd:MTH00199 342 ialtlALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
14-292 |
1.22e-22 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 97.97 E-value: 1.22e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 14 MLVGTILSFSSNSWFGVWMGLEI-NLLSFIPLLTNNKSMMMNESSIKYFIVQALASTMLLFSILMI-------------- 78
Cdd:PRK05777 112 ALLGMMVMVSANDLLTLFLGLELlSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLygatgslsfagiak 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 79 ----QMNHPIGWesdIIASTMITSSLMLKIGAAPFHFWFPEVMMMSSWTNCFILMTMQKIAPMAVM---------SYCIH 145
Cdd:PRK05777 192 aladGSGNSLLL---LFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLlrllvvafgGLSED 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 146 MNIFTMTIIILSICVGAVGGINQTSLYQILAYSSISHLGWMISSMLISENMWEMYFMIYSILSAIM------IMIFNKTK 219
Cdd:PRK05777 269 WQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMtlgafgVISLLRRK 348
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 470235843 220 SSFVTQLFLSNNIKIEIKFMSF---ITLLSLGGIPPFIGFLPKWMVMQTMIENKLSSIMTIMVMTTLITLYYYMRI 292
Cdd:PRK05777 349 GGEAESISDFAGLSKRSPLLAAvmtIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
15-292 |
5.25e-18 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 84.61 E-value: 5.25e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 15 LVGTILSFSSNSWFGVWMGLEINLLSFIPLLT-NNKSMMMNESSIKYFIVQALASTMLLFSILMI--------------- 78
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgslnfedlllf 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 79 QMNHPIGWESDIIASTMITSSLMLKIGAAPFHFWFPEVMMMSSWTNCFILMTMQKIAPMAVM---------SYCIHMNIF 149
Cdd:TIGR01770 192 LSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyilfGFSEAWQIF 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 150 TMTIIILSICVGAVGGINQTSLYQILAYSSISHLGW-MISSMLISENMWE---MYFMIYSILS----AIMIMIFNKTKSS 221
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSlgafGVLSLLRSYKDEW 351
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 470235843 222 FVTQLFLSNNIKIE--IKFMSFITLLSLGGIPPFIGFLPKWMVMQTMIENKLSSIMTIMVMTTLITLYYYMRI 292
Cdd:TIGR01770 352 IEYISDFAGLFKTNpiLAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
16-292 |
2.15e-15 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 76.82 E-value: 2.15e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 16 VGTILSFSSNSWFGVWMGLEINLLSFIPLLTNNKSMMMN---------ESSIKYFIVQALASTMLLFSI-LMIQMNHPIG 85
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCaLYFGFTGNEG 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 86 WESDIIASTM----------------ITSSLMLKIGAAPFHFWFPEVMMMSSWTNCFILMTMQKIAPMAVMSYCIHMNIF 149
Cdd:MTH00198 279 MLGTILSATLettnielrqgslgylfITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKL 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 150 TMTIIILSICVGAVGGINQTSLYQILAYSSISHLGWMISSM-------LISENMWEMYFMIYSILSAIMIMIFNKTKSSF 222
Cdd:MTH00198 359 LLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVsagtyesLQASWTYAVTYLVSALASFTVICTLEEFGTRT 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 223 VTQ------------------LFLSNNIKIEIKFMSFITLLSLGGIPPFIGFLPKWMVMQTMIENKLSSIMTI------- 277
Cdd:MTH00198 439 PTSrqrdgsfgnynlvrrlvdLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIyylvalf 518
|
330
....*....|....*
gi 470235843 278 MVMTTLITLYYYMRI 292
Cdd:MTH00198 519 AIICTCISAFYYIRI 533
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
10-296 |
2.15e-14 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 73.64 E-value: 2.15e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 10 FLSTMLVGTILSFSSNSWFGVWMGLEINLLSFIPLLTNNKSMMMNESSIKYFIVQALASTMLLFSILMI----------- 78
Cdd:COG0651 112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLygatgtlnmad 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 79 --QMNHPIGWESDIIASTMITSSLMLKIGAAPFHFWFPEVM---------MMSSwtncfiLMTmqKIAPMAVM------- 140
Cdd:COG0651 192 laARLAELDPGLLLAAFALLLVGFGIKAALFPLHFWLPDAYpaapspvsaLLSG------LLT--KVGVYAILrvltllf 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 141 --SYCIHMNIFTMTIIILSICVGAVGGINQTSLYQILAYSSISHLGWMISSMLISENM---WEMYFMIYSILSAIMI--- 212
Cdd:COG0651 264 gaDPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLglaGALFHLLNHALAKALLfla 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 213 --MIFNKTKSSFVTQLF-LSNNIKIeIKFMSFITLLSLGGIPPFIGFLPKWMVMQTMIENKLSSIMTIMVMTTLITLYYY 289
Cdd:COG0651 344 agAIERATGTRDLDKLGgLGKRMPL-TAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYF 422
|
....*..
gi 470235843 290 MRIGFSA 296
Cdd:COG0651 423 VRIFGRA 429
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
34-292 |
6.15e-09 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 57.20 E-value: 6.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 34 LEINLLSFIPLLTNNKSMMMNESSIKYFIVQALASTMLLFSILMIQM---------NHPIGWESDIIASTM--ITSSLML 102
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGvtgtlnmadLAGALAENPTVVTAFgfVLLALAL 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 103 KIGAAPFHFWFPEVMMM-SSWTNCFILMTMQKIAPMAVMSYCIHM-----------NIFTMTIIILSICVGAVGGINQTS 170
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTVfggdfrfalglGWLLAVLALLSMLVGSLAALGQDD 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 171 LYQILAYSSISHLGWMISSMLISENMWEMYFMIYSILSAIMI--------MIFNKTKSSFVTQL--FLSNNIKIEIKFms 240
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKgalflaagAIEVTYGTRRLSELsgLGRRMPLTAAAF-- 372
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 470235843 241 FITLLSLGGIPPFIGFLPKWMVMQTMIENKLSSIMTIMVMTTLITLYYYMRI 292
Cdd:PRK08375 373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRI 424
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
54-332 |
6.81e-09 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 56.98 E-value: 6.81e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 54 NESSIKYFIVQALASTMLLFSILMIQMNHPIGWESDIIASTMITS-SLML-------------KIGAAPFHFWFPEVMMM 119
Cdd:PRK02504 160 NEAALKYLLIGAASSAIFLYGSSLLYGLSGGSTQLSAIALALITSpSLGLalalvfviagiafKISAVPFHQWTPDVYEG 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 120 SSWTNCFILMTMQKIAPMAV-----------MSYCIHMnIFTMtIIILSICVGAVGGINQTSLYQILAYSSISHLGW-MI 187
Cdd:PRK02504 240 SPTPVVAFLSVGSKAAGFALairllvtafpsFDEQWKL-LFTA-LAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFvMI 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 188 ----------SSMLisenmweMYFMIYSILS----AIMIMIFNKT-------------KSSFVTqLFLSnnikieikfms 240
Cdd:PRK02504 318 glvagteagyASMV-------FYLLAYLFMNlgafACVILFSLRTgtdqisdyaglyqKDPLLT-LGLS----------- 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 241 fITLLSLGGIPPFIGFLPKWMVMQTMIENKLSSIMTIMVMTTLITLYYYMRI----------GFSALIINYTEMTWTMNK 310
Cdd:PRK02504 379 -LCLLSLGGIPPLAGFFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIRVikmmvvkepqEMSDVVKNYPEINWNLPG 457
|
330 340
....*....|....*....|..
gi 470235843 311 IKVKQNLLFMIMVMTSMMGLIF 332
Cdd:PRK02504 458 MRPLRVGLVLCVIATALAGILS 479
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
55-296 |
1.56e-08 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 55.87 E-value: 1.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 55 ESSIKYFIVQALASTMLLFSI----------------LMIQMNhpiGWESDIIASTMITSSLMLKIGAAPFHFWFPEVMM 118
Cdd:PRK08376 172 EAGIKYMFVGSLASSMVLLGIallygqygtlnmaylaVKMSEN---PTVVAKIALALFIAGLAMKSGAVPVHMWLPDAYP 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 119 MS-SWTNCFILMTMQ----KIAPMAVMSYCIHMNIFTMTIII-----LSICVGAVGGINQTSLYQILAYSSISHLGWMI- 187
Cdd:PRK08376 249 AApSSISAMLLVIKQaglyALARVLFSIYGPAINLATVGWVIiilgcLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLl 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 188 ----------SSMLISENMWEMYFMIYSILSAIMI---------MIFNKTKSSFVTQLF-LSNNIKIEIkFMSFITLLSL 247
Cdd:PRK08376 329 glgvglaalgDPAMASYGEIALAGGIYHIVNHALYkallfltagAVIYETGTRNLNELGgLARTMPKTT-IAFLIGAAAI 407
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 470235843 248 GGIPPFIGFLPKWMVMQTM-IENKLSSImtIMVMTTLITLYYYMRIGFSA 296
Cdd:PRK08376 408 VGLPPFNGFASKWLIYESSaLFNPILGV--IAMIGSVLTLASFVKVFHTA 455
|
|
| PRK12665 |
PRK12665 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
10-292 |
3.73e-08 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237165 [Multi-domain] Cd Length: 521 Bit Score: 54.59 E-value: 3.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 10 FLSTMLV---GTILSFSSNSWFGVWMGLEINLLSFIPLLTNNKSMMMNESSIKYFIVQALASTMLLFSILMI-------Q 79
Cdd:PRK12665 113 FLPTYLIlvaGVSNAFLAGDLFNLYVGFEILLVASYVLLTLGATAARVRAGVTYVMVSMVSSLLFLIGIALVyaatgtlN 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 80 MNHPIGWESDIIASTMITSSLML----KIGAA--PFHFWFPEvmmmsSW-------TNCFI-LMTmqkiapmAVMSYCI- 144
Cdd:PRK12665 193 MADLAVRLDELPSGTRTALFAVLlvafGIKAAvfPLSFWLPD-----SYptapapvTAVFAgLLT-------KVGVYAIi 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 145 ----------HMNIFTMTIIILSICVGAVGGINQTSLYQILAYSSISHLGWMISSMLISeNMWEMYFMIYSILSAIMI-- 212
Cdd:PRK12665 261 rthtllfpggGLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALS-TVAGLSGAIYYVAHHITVqt 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 213 -------MIFNKTKSSFVTQLFLSNNIKIEIKFMSFITLLSLGGIPPFIGFLPKWMVMQTMIENK--LSSIMTI-MVMTT 282
Cdd:PRK12665 340 tlflvvgLIERQAGSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLEAGAEDGtwLAWALVAgGVVTS 419
|
330
....*....|
gi 470235843 283 LITLYYYMRI 292
Cdd:PRK12665 420 LLTLYAVARV 429
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
8-292 |
1.89e-07 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 52.31 E-value: 1.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 8 LLFLSTMLVGTILSFSSNSWFGVWMGLE-INLLSFIPLLTNNKSMMMNESSIKYFIVQALASTMLLF------------- 73
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALEcLSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVYgfswlyglsggei 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 74 -------SILMIQMNHPIGwesDIIASTMITSSLMLKIGAAPFHFWFPEVMMMSSWTNCFILMTMQKIAPMAVMSYCIHM 146
Cdd:CHL00049 194 elqeivnGLINTQMYNSPG---ISIALIFITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIFDI 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 147 ---------NIFTMTIIILSICVGAVGGINQTSLYQILAYSSISHLGWMISSmLISENMWEMYfmiYSILSAIMIMIFNK 217
Cdd:CHL00049 271 pfyfssnewHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIG-IIVGDSNDGY---ASMITYMLFYIFMN 346
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 218 TKSSFVTQLFL----SNNIK------IEIKFMSF---ITLLSLGGIPPFIGFLPKWMVMQTMIENKLSSIMTIMVMTTLI 284
Cdd:CHL00049 347 LGTFACIVLFGlrtgTDNIRdyaglyTKDPFLALslaLCLLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVI 426
|
....*...
gi 470235843 285 TLYYYMRI 292
Cdd:CHL00049 427 SIYYYLKI 434
|
|
| PRK12667 |
PRK12667 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
147-295 |
3.94e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 45.35 E-value: 3.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 147 NIFTMTIIIL---SICVGAVGGINQTSLYQILAYSSISHLGWMISSMLISENMWEMYFMIYSILSAIMI--------MIF 215
Cdd:PRK12667 292 AALSPILIILgavSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKsllflasgVFI 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 216 NKTKSSFVTQLFLSNNIKIEIKFMSFITLLSLGGIPPFIGFLPKWMVMQTMIENKLSSIMTIMVMTTLITLYYYMRIGFS 295
Cdd:PRK12667 372 HAAGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYS 451
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
1-292 |
1.21e-04 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 43.83 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 1 MTKNLMKLLFLSTMLVGTILSFSSNSWFGVWMGLEINLLS--FIPLLTNNKSmmmNESSIKYFIVQALASTMLLFSILMI 78
Cdd:PRK08668 94 TKNDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSsfMMVPMGKKES---RKASLKYFVLSAIGAYAMLYAIFLI 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 79 QMNHPIGWESDIIASTMITSSL--------------MLKIGAAPFHFWFPEVMMMS--SWTNCF---------------- 126
Cdd:PRK08668 171 YAKTGTFDFADISQGLINDTSTgfalivflfllafgVAKAGIFPLHVWAPDAYSEApqSFSAVLsgqlsklgaygfllvl 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 127 -ILMTMQKIAPMAVMSYCIHMNIFTMTIIILSICVGAVGGINQTSLYQILAYSSISHLGWMISSMLISENM----WEMYF 201
Cdd:PRK08668 251 yVLPGTKLFSEFGTYRGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLgfagGLFHV 330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 202 MIYSILSAIMIMIF-------NKTKSSFVTQLFLsnniKIEIKF-MSFITLLSLGGIPPFIGFLPKWMVMQTMIENKLSS 273
Cdd:PRK08668 331 FNHALFKGLFFLIFaaviyrtGTTKISEMGGLIE----KMPFTFaMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPI 406
|
330
....*....|....*....
gi 470235843 274 IMTIMVMTTLITLYYYMRI 292
Cdd:PRK08668 407 TAFMAFFGSIGSFLYVFRP 425
|
|
| ND2 |
MTH00091 |
NADH dehydrogenase subunit 2; Provisional |
19-324 |
1.38e-04 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177154 Cd Length: 273 Bit Score: 42.94 E-value: 1.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 19 ILSFSSNSWFGVWMGLEINLLSFIPLLTNNKSMMMNessikYFIVQALASTMLLFSILMIQMnhpigwesdiiastmitS 98
Cdd:MTH00091 8 FMSLNIFVWWSVFLLMTLLFVFLNKGMGSYSSLFNY-----FVLQESLGLLFLLFSFGYFQF-----------------L 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 99 SLMLKIGAAPFHFWFPEVMMMSSWTNCFILMTMQKIAPMAVMSYCIHMNIFTMTIIILSICVGAVggINQTSLYQILAYS 178
Cdd:MTH00091 66 ILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGLLICFFQM--FLLKSYKNLLILS 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 179 SISHLGWMISSMLISENMWEMYFMIYSILSAIMIMIFNKTKSsfvtqlflsnnikieIKFMSFITLLSLGGIPPFIGFLP 258
Cdd:MTH00091 144 STESFNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKFNNVNK---------------LNFVSWETLLVFMNLPFSVTFFV 208
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 470235843 259 KWMVMQTMieNKLSSIMTIMVMTTLITLYYYmrigFSALIINYTEMTWTMNKIKVKQNLLFMIMVM 324
Cdd:MTH00091 209 KIFSLSEI--LKVLGFFLLFLLFLMFLSVLS----LSFWLVNLSTKLFLMLFKYNKGFFFFFLPLM 268
|
|
| PRK06589 |
PRK06589 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
10-303 |
7.97e-04 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235835 [Multi-domain] Cd Length: 489 Bit Score: 40.96 E-value: 7.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 10 FLSTMLVGTILSFSSNsWFGVWMGLEINLLSFIPLLTNNKSMMMNESSIKYFIVQALASTMLLFSILMI--QMNHPIGWE 87
Cdd:PRK06589 122 FNLTILIGVLIALSSD-LFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVILiyTKTGNLDFV 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 88 SDIIAS--TMITSSLMLKIGAA-----PFHFWFPEVMMMSSWTNCF-------------ILMTMQKIAPMAVMSYCIHMN 147
Cdd:PRK06589 201 SGGLFSknQSIILLLMFIYGIAktaifPVHSWLPAAMVAHYPVSALlhavivvktglfcIYKILLYIFGLSYLQRIFAEF 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 148 IFTMTIIILSICVGAVGGINQTSLYQILAYSSISHLGWMI--SSMLISENMWEMYFMIYS------ILSAIMIMIFNKTK 219
Cdd:PRK06589 281 NWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsAFILTPKALGAAILHLVShsfakiCLFYSMGSIYSLKK 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 220 SSFVTQLFLSNNIKIEIKFMSFITLLSLGGIPPFIGFLPKWMVMQTMIENKLSS----IMTIMVMTTLITLYYYMRIGFS 295
Cdd:PRK06589 361 EDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWlsiiVMLVVIASSILSALYLLKILSS 440
|
....*...
gi 470235843 296 ALIINYTE 303
Cdd:PRK06589 441 IYKPSLSE 448
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
84-294 |
2.10e-03 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 39.75 E-value: 2.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 84 IGWESDIIASTMITSSLMLKIGAA-------PFHFWFPEVMMmsswtncfilmtmqkiAPMAVMSYcIH----------- 145
Cdd:COG1009 198 LAAAPTILSSPLLTLILLLLLLGAfgksaqfPLHFWLPDAME----------------GPTPVSAL-LHaatmvkagvyl 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 146 ---------MNIFTMTIII----LSICVGAVGGINQTSLYQILAYSSISHLGWMISSMLISenmwemyfmiySILSAIMI 212
Cdd:COG1009 261 larlsplfaLSPVWLTVVAiigaITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVG-----------AYVAALFH 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 213 MIfnkTKSSFVTQLFLS----------NNI--------KIEIKFMSF-ITLLSLGGIPPFIGFLPKWMVMQTMIENKLSS 273
Cdd:COG1009 330 LL---THAFFKALLFLGagsvihatgtRDIrkmgglrkKMPITAITFlIGALSLAGIPPFAGFFSKEAILEAALEAGGLG 406
|
250 260
....*....|....*....|...
gi 470235843 274 IM--TIMVMTTLITLYYYMRIGF 294
Cdd:COG1009 407 PLllAVALLGAFLTAFYSFRLFF 429
|
|
| PRK07691 |
PRK07691 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
149-292 |
2.22e-03 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 181085 [Multi-domain] Cd Length: 496 Bit Score: 39.55 E-value: 2.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 149 FTMTIII----LSICVGAVGGINQTSLYQILAYSSISHLGWM---ISSMLISENMWEMYFMIYSILSAIMI-----MIFN 216
Cdd:PRK07691 273 FTHYLILilalLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVIlvgVAMMTESGMIGAIYYLIHDMIVKAALflligIMIK 352
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 470235843 217 KTKSSFVTQLFLSNNIKIEIKFMSFITLLSLGGIPPFIGFLPKWMVMQTMIENKLSSIMTIMVMTTLITLYYYMRI 292
Cdd:PRK07691 353 ITGTTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
|
|
| PRK12645 |
PRK12645 |
monovalent cation/H+ antiporter subunit A; Reviewed |
148-268 |
2.96e-03 |
|
monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 237155 [Multi-domain] Cd Length: 800 Bit Score: 39.52 E-value: 2.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235843 148 IFTMTII-ILSICVGAVGGINQTSLYQILAYSSISHLGwMISSML----ISENMWEMYFMIYSIlsAIMIMIFNK-TKSS 221
Cdd:PRK12645 274 FWTVTLVgLITLFWGSLNAVKQTDLKGILAFSTVSQLG-LIMSLLgigaASLHYQGDDSKIYAA--AITAAIFHLiNHAT 350
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 470235843 222 FVTQLFL----------SNNIK--------IEIKF-MSFITLLSLGGIPPFIGFLPKWMVMQTMIE 268
Cdd:PRK12645 351 FKGSLFMivgivdhetgTRDIRklgglmtiMPITFtIALIGALSMAGLPPFNGFLSKEMFFESMLN 416
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