|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-334 |
3.35e-151 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 428.88 E-value: 3.35e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 1 MNPTALMPISMTIFMGTTITMISSHWLLIWMGLEINMLAIIPILTKKNNPRSVEAATKYFLTQATASMLLMMTITINAMY 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 81 TGQWNITNIYDPLTSTTIIFALTMKLGMTPFHFWVPEVTQGITLTAGMLLLTWQKLAPISIMLQIHPSMNLDMLLTLALL 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 161 STLIGGWGGLNQTQLRKILAYSSIAHMGWMVVVLMYCPPLTMLNLLVYLMLTTTMFTMLNVYKSTTTLTLSTLWNKNPTI 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 241 TLMILISLLSLGGLPPLTGFLPKWMIVQELTKNNNILLATVMVMMALLNLYFYMRLVYSTSLTMFPVSNNTKMKWQHNPK 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330
....*....|....
gi 529217154 321 KPTLLLPPLIALST 334
Cdd:MTH00105 321 KPMTLLPTLIILST 334
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
21-297 |
1.89e-19 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 88.85 E-value: 1.89e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 21 MISS-HWLLIWMGLEINMLAI-IPILTKKNNPRSVEAATKYFLTQATASMLLMMTITINAMYTGQWNITNIY-------- 90
Cdd:TIGR01770 118 LVSSnDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLlflsngml 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 91 -DPLTSTTIIF---ALTMKLGMTPFHFWVPEVTQGITLTAGMLLLTWQKLAPISIMLQIHPSM-------NLDMLLTLAL 159
Cdd:TIGR01770 198 nISLLLLGIVLilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfseaWQIFLAIIAF 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 160 LSTLIGGWGGLNQTQLRKILAYSSIAHMGWMVVVLMYCPPLTMLNLLVYLMLTTTM-------FTMLNVYKSTTTLTLST 232
Cdd:TIGR01770 278 LSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMslgafgvLSLLRSYKDEWIEYISD 357
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 529217154 233 LWN---KNPTITLMILISLLSLGGLPPLTGFLPKWMIVQELTKNNNILLATVMVMMALLNLYFYMRLV 297
Cdd:TIGR01770 358 FAGlfkTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-283 |
7.78e-19 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 85.44 E-value: 7.78e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 23 SSHWLLIWMGLEINMLAIIPILT-KKNNPRSVEAATKYFLTQATASMLLMMTITINAMYTGQWNITNIYDPLTSTT---- 97
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 98 -------IIFALTMKLGMTPFHFWVPEVTQGITLTAGMLLL-TWQKLAPISIM---LQIHPSMNLDMLLTLA--LLSTLI 164
Cdd:pfam00361 81 llllfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIrrsLLYLPSSPFIQQILLIlaIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 165 GGWGGLNQTQLRKILAYSSIAHMGWMVVVLM----YCPPLTMLNLLVYLMLTTTMFTM-----LNVYKSTTTLTLSTLWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCagsviYRRVHTRNIRDYGGLAK 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 529217154 236 KNPTITLMILISLLSLGGLPPLTGFLPKWMIVQELTKNNNILLATVMV 283
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGV 288
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
19-298 |
1.04e-18 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 86.71 E-value: 1.04e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 19 ITMISS-HWLLIWMGLEINMLAIIpILT--KKNNPRSVEAATKYFLTQATASMLLMMTITINAMYTGQWNITNIYDPLTS 95
Cdd:COG1007 116 MLMASAnDLLTLFLGLELLSLSLY-VLVafRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIAAALAA 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 96 TT-----IIFALTM-------KLGMTPFHFWVPEVTQG----ITL-------TAGMLLL-------------TWQK-LAP 138
Cdd:COG1007 195 GGansplLLLGLVLvlaglafKLSAVPFHMWTPDVYEGaptpVTAflatapkIAAFAALlrllveafpglaaDWQLlLAV 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 139 ISIMlqihpSMnldmlltlallstLIGGWGGLNQTQLRKILAYSSIAHMGWMVVVLMYCPPL----TMLNLLVYLMLTTT 214
Cdd:COG1007 275 LAVL-----SM-------------TVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLG 336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 215 MFTMLNVYKSTTTLTLSTL-----WNKNPTITLMILISLLSLGGLPPLTGFLPKWMIVQELTKNNNILLATVMVMMALLN 289
Cdd:COG1007 337 AFAVILLLSRKGGEAEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVIS 416
|
....*....
gi 529217154 290 LYFYMRLVY 298
Cdd:COG1007 417 AYYYLRVVK 425
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-334 |
3.35e-151 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 428.88 E-value: 3.35e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 1 MNPTALMPISMTIFMGTTITMISSHWLLIWMGLEINMLAIIPILTKKNNPRSVEAATKYFLTQATASMLLMMTITINAMY 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 81 TGQWNITNIYDPLTSTTIIFALTMKLGMTPFHFWVPEVTQGITLTAGMLLLTWQKLAPISIMLQIHPSMNLDMLLTLALL 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 161 STLIGGWGGLNQTQLRKILAYSSIAHMGWMVVVLMYCPPLTMLNLLVYLMLTTTMFTMLNVYKSTTTLTLSTLWNKNPTI 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 241 TLMILISLLSLGGLPPLTGFLPKWMIVQELTKNNNILLATVMVMMALLNLYFYMRLVYSTSLTMFPVSNNTKMKWQHNPK 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330
....*....|....
gi 529217154 321 KPTLLLPPLIALST 334
Cdd:MTH00105 321 KPMTLLPTLIILST 334
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-334 |
2.61e-118 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 345.64 E-value: 2.61e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 1 MNPTALMPISMTIFMGTTITMISSHWLLIWMGLEINMLAIIPILTKKNNPRSVEAATKYFLTQATASMLLMMTITINAMY 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 81 TGQWNITNIYDPLTSTTIIFALTMKLGMTPFHFWVPEVTQGITLTAGMLLLTWQKLAPISIMLQIHPSmNLDMLLTLALL 160
Cdd:MTH00135 81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 161 STLIGGWGGLNQTQLRKILAYSSIAHMGWMVVVLMYCPPLTMLNLLVYLMLTTTMFTMLNVYKSTTTLTLSTLWNKNPTI 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 241 TLMILISLLSLGGLPPLTGFLPKWMIVQELTKNNNILLATVMVMMALLNLYFYMRLVYSTSLTMFPVSNNTKMKWQHNPK 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
|
330
....*....|....
gi 529217154 321 KPTLLLPPLIALST 334
Cdd:MTH00135 320 QLTLPLAISTTATL 333
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-334 |
3.93e-109 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 322.16 E-value: 3.93e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 1 MNPTALMPISMTIFMGTTITMISSHWLLIWMGLEINMLAIIPILTKKNNPRSVEAATKYFLTQATASMLLMMTITINAMY 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 81 TGQWNITNIYDPLTSTTIIFALTMKLGMTPFHFWVPEVTQGITLTAGMLLLTWQKLAPISIMLQIHPSMNLDMLLTLALL 160
Cdd:MTH00112 81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 161 STLIGGWGGLNQTQLRKILAYSSIAHMGWMVVVLMYCPPLTMLNLLVYLMLTTTMFTMLNVYKSTTTLTLSTLWNKNPTI 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 241 TLMILISLLSLGGLPPLTGFLPKWMIVQELTKNNNILLATVMVMMALLNLYFYMRLVYSTSLTMFPVSNNTKMKWQHNPK 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
|
330
....*....|....
gi 529217154 321 KPTlLLPPLIALST 334
Cdd:MTH00112 321 KNT-LTATLTTLST 333
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-334 |
8.81e-108 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 318.79 E-value: 8.81e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 1 MNPTALMPISMTIFMGTTITMISSHWLLIWMGLEINMLAIIPILTKKNNPRSVEAATKYFLTQATASMLLMMTITINAMY 80
Cdd:MTH00070 1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 81 TGQWNITNIYDPLTSTTIIFALTMKLGMTPFHFWVPEVTQGITLTAGMLLLTWQKLAPISIMLQIHPSMNLDMLLTLALL 160
Cdd:MTH00070 81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 161 STLIGGWGGLNQTQLRKILAYSSIAHMGWMVVVLMYCPPLTMLNLLVYLMLTTTMFTMLNVYKSTTTLTLSTLWNKNPTI 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 241 TLMILISLLSLGGLPPLTGFLPKWMIVQELTKNNNILLATVMVMMALLNLYFYMRLVYSTSLTMFPVSNNTKMKWQHNpK 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFK-N 319
|
330
....*....|....
gi 529217154 321 KPTLLLPPLIALST 334
Cdd:MTH00070 320 KTNNLLSLTIILSL 333
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-334 |
2.43e-81 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 251.43 E-value: 2.43e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 1 MNPTALMPISMTIFMGTTITMISSHWLLIWMGLEINMLAIIPILTKKNNPRSVEAATKYFLTQATASMLLMMTITINAMY 80
Cdd:MTH00200 1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 81 TGQWNITNIYDPLTSTTIIFALTMKLGMTPFHFWVPEVTQGITLTAGMLLLTWQKLAPISIMLQIHPSMNLDMLLTLALL 160
Cdd:MTH00200 81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 161 STLIGGWGGLNQTQLRKILAYSSIAHMGWMVVVLMYCPPLTMLNLLVYLMLTTTMFTMLNVYKSTTTLTLSTLWNKNPTI 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 241 TLMILISLLSLGGLPPLTGFLPKWMIVQELTKNNNILLATVMVMMALLNLYFYMRLVYSTSLTMFPVSNNTKMKWQhNPK 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWR-TKS 319
|
330
....*....|....
gi 529217154 321 KPTLLLPPLIALST 334
Cdd:MTH00200 320 NSNLLVGLLLLLSI 333
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-306 |
1.27e-79 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 246.77 E-value: 1.27e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 1 MNPTALMPISMTIFMGTTITMISSHWLLIWMGLEINMLAIIPILTKKNNPRSVEAATKYFLTQATASMLLMMTITINAMY 80
Cdd:MTH00041 1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 81 TGQWNITNIYDPLTSTTIIFALTMKLGMTPFHFWVPEVTQGITLTAGMLLLTWQKLAPISIMLQIHPSMNLDMLLTLALL 160
Cdd:MTH00041 81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 161 STLIGGWGGLNQTQLRKILAYSSIAHMGWMVVVLMYCPPLTMLNLLVYLMLTTTMFTMLNVYKSTTTLTLSTLWNKNPTI 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 529217154 241 TLMILISLLSLGGLPPLTGFLPKWMIVQELTKNNNILLATVMVMMALLNLYFYMRLVYSTSLTMFP 306
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFP 306
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-330 |
2.74e-48 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 165.38 E-value: 2.74e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 1 MNPTALMPISMTIFMGTTITMISSHWLLIWMGLEINMLAIIPILTKKNNPRSVEAATKYFLTQATASMLLMMTITINAMy 80
Cdd:MTH00160 2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 81 tgqwnITNIYDPLTSTTIIFALTMKLGMTPFHFWVPEVTQGITLTAGMLLLTWQKLAPISIMLQIhpsMNLDMLLTLALL 160
Cdd:MTH00160 81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 161 STLIGGWGGLNQTQLRKILAYSSIAHMGWMVVVLMYCPPLTMLNLLVYLMLTTTMFTMLNVYKSTTTLTLSTLWNKNPTI 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 241 TLMILISLLSLGGLPPLTGFLPKWMIVQELTKNNNILLATVMVMMALLNLYFYMRLVYSTSLtmfpvSNNTKMKWQHNPK 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLM-----LNYNKNKWNLKKK 307
|
330
....*....|
gi 529217154 321 KPTLLLPPLI 330
Cdd:MTH00160 308 KNKFSLILNF 317
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
11-315 |
1.31e-47 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 163.52 E-value: 1.31e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 11 MTIFMGTTITMISSHWLLIWMGLEINMLAIIPILTKKNNPRSVEAATKYFLTQATASMLLMMTITINAMYTGQWNItniy 90
Cdd:MTH00144 11 FLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFS---- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 91 dpltSTTIIFALTMKLGMTPFHFWVPEVTQGITLTAGMLLLTWQKLAPISIMLQIHPSMNLDMLLTLA-LLSTLIGGWGG 169
Cdd:MTH00144 87 ----MSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVIsVLSALVGSIGG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 170 LNQTQLRKILAYSSIAHMGWMVVVLMYCPPLTMLNLLVYLMLTTTMFTMLNvYKSTTTLTLSTLWNKNPTITLMILISLL 249
Cdd:MTH00144 163 LNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLW-SGDSGSMKDLGSLKPSYKTGLSIISLLL 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 529217154 250 SLGGLPPLTGFLPKWMIVQELTKNNNILLATVMVMMALLNLYFYMRLVYSTSLTMFPVSNNTKMKW 315
Cdd:MTH00144 242 SLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
6-309 |
1.12e-45 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 158.40 E-value: 1.12e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 6 LMPISMTIFMGTTITMISSHWLLIWMGLEINMLAIIPILTKKNNPRSVEAATKYFLTQATASMLLMMTITINAMYTGQWN 85
Cdd:MTH00011 8 MFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLLK 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 86 ITniydplTSTTIIFALTMKLGMTPFHFWVPEVTQGITLTAGMLLLTWQKLAPISIMLQIHPSMNLDMLLTLALLSTLIG 165
Cdd:MTH00011 88 NI------TALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 166 GWGGLNQTQLRKILAYSSIAHMGWMVVVLMYCPPLTMLNLLVYLMLTTTMFTMLNVYKSTTTLTLSTLWNKNPTITLMIL 245
Cdd:MTH00011 162 GLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLF 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 529217154 246 ISLLSLGGLPPLTGFLPKWMIVQELTKNNNILLATVMVMMALLNLYFYMRLVYSTSLTMFPVSN 309
Cdd:MTH00011 242 IMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSS 305
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
12-300 |
5.10e-36 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 132.87 E-value: 5.10e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 12 TIFMGTTITMISSHWLLIWMGLEINMLAIIPILTKKNNPRSVEAATKYFLTQATASMLLMMTitinamytGQWNITNIYD 91
Cdd:MTH00197 6 IIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMG--------GSLSFSNLYL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 92 PLTSTTIIF-ALTMKLGMTPFHFWVPEVTQGITLTAGMLLLTWQKLAPISIMLQIhpSMNLDMLLTLALLSTLIGGWGGL 170
Cdd:MTH00197 78 SLLSVVLVIlGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFN--SSSFMGLLICSVLSSLIGGIGGM 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 171 NQTQLRKILAYSSIAHMGWMVVVLMYCPPLTMLNLLVYLMLTTTMFTMLNVYKSTTTLTLSTLWNKNPTITLMILISLLS 250
Cdd:MTH00197 156 NQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLS 235
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 529217154 251 LGGLPPLTGFLPKWMIVQELTKNNNILLATVMVMMALLNLYFYMRLVYST 300
Cdd:MTH00197 236 LGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKS 285
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
13-297 |
4.15e-22 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 95.48 E-value: 4.15e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 13 IFMGTTITMISSHWLLIWMGLEINMLAI-IPILTKKNNPRSVEAATKYFLTQATASMLLMMTIT-------------INA 78
Cdd:MTH00196 2 VALGILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCAllcgttgglhlsyINL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 79 MYTGQWNITNIYDPLTSTTIIFALTMKLGMTPFHFWVPEVTQGITLTAGMLLLTWQKLAPISIMLQIHPSMNldMLLTLA 158
Cdd:MTH00196 82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 159 LLSTLIGGWGGLNQTQLRKILAYSSIAHMGWMVVVLMYCPPLTMLNLLVYLMLTTTM----FTMLNVYKSTTTLTLST-- 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIQASLVYLFIYIIMsicvFSIILALNVYKNLIIEFsg 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 529217154 233 LWNKNPTITLMILISLLSLGGLPPLTGFLPKWMIVQELTKNNNILLATVMVMMALLNLYFYMRLV 297
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIV 304
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
21-297 |
1.89e-19 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 88.85 E-value: 1.89e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 21 MISS-HWLLIWMGLEINMLAI-IPILTKKNNPRSVEAATKYFLTQATASMLLMMTITINAMYTGQWNITNIY-------- 90
Cdd:TIGR01770 118 LVSSnDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLlflsngml 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 91 -DPLTSTTIIF---ALTMKLGMTPFHFWVPEVTQGITLTAGMLLLTWQKLAPISIMLQIHPSM-------NLDMLLTLAL 159
Cdd:TIGR01770 198 nISLLLLGIVLilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfseaWQIFLAIIAF 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 160 LSTLIGGWGGLNQTQLRKILAYSSIAHMGWMVVVLMYCPPLTMLNLLVYLMLTTTM-------FTMLNVYKSTTTLTLST 232
Cdd:TIGR01770 278 LSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMslgafgvLSLLRSYKDEWIEYISD 357
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 529217154 233 LWN---KNPTITLMILISLLSLGGLPPLTGFLPKWMIVQELTKNNNILLATVMVMMALLNLYFYMRLV 297
Cdd:TIGR01770 358 FAGlfkTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
23-298 |
2.17e-19 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 88.54 E-value: 2.17e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 23 SSHWLLIWMGLEINMLAIIpILT--KKNNPRSVEAATKYFLTQATASMLLMMTITINAMYTGQWNITNIYDPLTSTT--- 97
Cdd:MTH00199 116 SINWLSIYLAIELQTLTLF-ILValKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINSILTGDVgki 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 98 -IIFALTMKLGMTPFHFWVPEVTQGITLTAGMLLLTWQKLAPISIMLQIHPSMNLDMLLTLALLStlIGGWGGLNQTQLR 176
Cdd:MTH00199 195 lITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSII--YGAIGALNQTKIK 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 177 KILAYSSIAHMGW------------MVVVLMYcppltmlnLLVYLMLTTTMFTMLNVYKSTTTLT--LSTLWNKNPTITL 242
Cdd:MTH00199 273 RLLAYSGIGHMGFilfgvaigsfesIQASLIY--------MIIYVIMSICSFSIILSLKLTKGLIveVSGLSRKNPVIAL 344
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 529217154 243 MILISLLSLGGLPPLTGFLPKWMIVQELTKNNNILLATVMVMMALLNLYFYMRLVY 298
Cdd:MTH00199 345 TLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVVQ 400
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-283 |
7.78e-19 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 85.44 E-value: 7.78e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 23 SSHWLLIWMGLEINMLAIIPILT-KKNNPRSVEAATKYFLTQATASMLLMMTITINAMYTGQWNITNIYDPLTSTT---- 97
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 98 -------IIFALTMKLGMTPFHFWVPEVTQGITLTAGMLLL-TWQKLAPISIM---LQIHPSMNLDMLLTLA--LLSTLI 164
Cdd:pfam00361 81 llllfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIrrsLLYLPSSPFIQQILLIlaIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 165 GGWGGLNQTQLRKILAYSSIAHMGWMVVVLM----YCPPLTMLNLLVYLMLTTTMFTM-----LNVYKSTTTLTLSTLWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCagsviYRRVHTRNIRDYGGLAK 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 529217154 236 KNPTITLMILISLLSLGGLPPLTGFLPKWMIVQELTKNNNILLATVMV 283
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGV 288
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
19-298 |
1.04e-18 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 86.71 E-value: 1.04e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 19 ITMISS-HWLLIWMGLEINMLAIIpILT--KKNNPRSVEAATKYFLTQATASMLLMMTITINAMYTGQWNITNIYDPLTS 95
Cdd:COG1007 116 MLMASAnDLLTLFLGLELLSLSLY-VLVafRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIAAALAA 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 96 TT-----IIFALTM-------KLGMTPFHFWVPEVTQG----ITL-------TAGMLLL-------------TWQK-LAP 138
Cdd:COG1007 195 GGansplLLLGLVLvlaglafKLSAVPFHMWTPDVYEGaptpVTAflatapkIAAFAALlrllveafpglaaDWQLlLAV 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 139 ISIMlqihpSMnldmlltlallstLIGGWGGLNQTQLRKILAYSSIAHMGWMVVVLMYCPPL----TMLNLLVYLMLTTT 214
Cdd:COG1007 275 LAVL-----SM-------------TVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLG 336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 215 MFTMLNVYKSTTTLTLSTL-----WNKNPTITLMILISLLSLGGLPPLTGFLPKWMIVQELTKNNNILLATVMVMMALLN 289
Cdd:COG1007 337 AFAVILLLSRKGGEAEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVIS 416
|
....*....
gi 529217154 290 LYFYMRLVY 298
Cdd:COG1007 417 AYYYLRVVK 425
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
21-297 |
6.25e-15 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 75.24 E-value: 6.25e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 21 MISS-HWLLIWMGLEINMLAI-IPILTKKNNPRSVEAATKYFLTQATASMLLMMTITINAMYTGQWNITNIYDPLTSTT- 97
Cdd:PRK05777 119 MVSAnDLLTLFLGLELLSLPLyALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKALADGSg 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 98 ----IIFALTM-------KLGMTPFHFWVPEVTQG----ITL-------TAGMLLLT-------------WQK-LAPISI 141
Cdd:PRK05777 199 nsllLLFGLVFllvglafKLSAVPFHMWTPDVYEGaptpVTAflatapkIAAFAVLLrllvvafgglsedWQQvLAIIAI 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 142 MlqihpSMnldmlltlallstLIGGWGGLNQTQLRKILAYSSIAHMGWMVVVLMYCPPL----TMLNLLVYLMLTTTMFT 217
Cdd:PRK05777 279 A-----SM-------------LVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEgysaVLFYLLAYLFMTLGAFG 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 218 MLN-VYKSTTTLTLSTLWN----KNPTITLMILISLLSLGGLPPLTGFLPKWMIVQELTKNNNILLATVMVMMALLNLYF 292
Cdd:PRK05777 341 VISlLRRKGGEAESISDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFY 420
|
....*
gi 529217154 293 YMRLV 297
Cdd:PRK05777 421 YLRVI 425
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
15-301 |
2.08e-10 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 61.32 E-value: 2.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 15 MGTTITMISSHWLLIWMGLEINMLAIIPILTKKNNPRSVEAATKYFLTQATASMLLMMTITINAMYTGQWNITNI----- 89
Cdd:COG0651 118 AGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaarla 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 90 -YDPLTSTT----IIFALTMKLGMTPFHFWVPE--------VT---QGITLTAGM--LLLTWQKLAPISIMLQIHPSMnl 151
Cdd:COG0651 198 eLDPGLLLAafalLLVGFGIKAALFPLHFWLPDaypaapspVSallSGLLTKVGVyaILRVLTLLFGADPALFLGTLL-- 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 152 dmlLTLALLSTLIGGWGGLNQTQLRKILAYSSIAHMGWMVVVLMYCPPLTMLNLLVYL----MLTTTMF----TMLNVYK 223
Cdd:COG0651 276 ---LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFlaagAIERATG 352
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 529217154 224 STTTLTLSTLWNKNPTITLMILISLLSLGGLPPLTGFLPKWMIVQELTKNNNILLATVMVMMALLNLYFYMRLVYSTS 301
Cdd:COG0651 353 TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRAQ 430
|
|
| NADH_dehy_S2_C |
pfam06444 |
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ... |
291-334 |
7.06e-09 |
|
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.
Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 51.10 E-value: 7.06e-09
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 529217154 291 YFYMRLVYSTSLTMFPVSNNTKMKWQHNPKKPTLLLPPLIALST 334
Cdd:pfam06444 1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSI 44
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
15-192 |
6.22e-08 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 54.09 E-value: 6.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 15 MGTTITMISSHWLLIWMGLEINMLAIIPILTKKNNPRSV---------EAATKYFLTQATASMLLMMTITINAMYTG-QW 84
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGnEG 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 85 NITNIYDPLTSTT-------------IIFALTMKLGMTPFHFWVPEVTQGITLTAGMLLLTWQKLapISIMLQIHPSMNL 151
Cdd:MTH00198 279 MLGTILSATLETTnielrqgslgylfITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 529217154 152 DMLLTLALLSTLIGGWGGLNQTQLRKILAYSSIAHMGWMVV 192
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILI 397
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
28-192 |
1.24e-06 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 49.94 E-value: 1.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 28 LIWMGLEINMLAIIPILTKKNNprsVEAATKYFLTQATASMLLMMTITINAMYTGQ-WNITNIYD---PLTSTTIIF--- 100
Cdd:TIGR01972 133 VFWEAMLIPMYLLIGVWGGPNR---IYAAMKFFLYTLAGSLLMLLAILGLYFLGGGtFDLLELLNlplPFGVQTWLFlaf 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 101 --ALTMKLGMTPFHFWVPEV-----TQGITLTAGMLLltwqKLAPISIM---LQIHP-SMNLDMLLTLALLSTLI--GGW 167
Cdd:TIGR01972 210 fiAFAVKVPLFPLHTWLPDAhveapTAGSVILAGVLL----KMGTYGFLrfnLPLFPdASLYFAPVLAALGVIAIiyGAL 285
|
170 180
....*....|....*....|....*
gi 529217154 168 GGLNQTQLRKILAYSSIAHMGWMVV 192
Cdd:TIGR01972 286 IALAQTDIKRLIAYSSISHMGFVLL 310
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
50-192 |
1.05e-05 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 47.00 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 50 PRSVEAATKYFLTQATASMLLMMTITINAMYTGQW--NITNIYD---PLTSTTIIFALTM-----KLGMTPFHFWVPEV- 118
Cdd:COG1008 157 ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplPLTAQLLLFLAFFiafavKVPMFPFHTWLPDAh 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 119 ----TQGITLTAGMLL----------------LTWQKLAPISIMLQIhpsmnldmlltlalLSTLIGGWGGLNQTQLRKI 178
Cdd:COG1008 237 veapTAGSVLLAGVLLkmggygllrfalplfpEASAYFAPLLAALGV--------------IGIIYGALVALAQTDLKRL 302
|
170
....*....|....
gi 529217154 179 LAYSSIAHMGWMVV 192
Cdd:COG1008 303 IAYSSVSHMGFVLL 316
|
|
| PRK05846 |
PRK05846 |
NADH:ubiquinone oxidoreductase subunit M; Reviewed |
50-192 |
5.16e-04 |
|
NADH:ubiquinone oxidoreductase subunit M; Reviewed
Pssm-ID: 235622 [Multi-domain] Cd Length: 497 Bit Score: 41.73 E-value: 5.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 50 PRSVEAATKYFLTQATASMLLMMTI----TINAMYTGQWNITNIYD---PLTSTTIIF-----ALTMKLGMTPFHFWVPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIiylvVVYYNATGTFDIADLLNlplPPGVQYWLFlaffiAFAVKMPMFPLHTWLPD 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 118 V-----TQGITLTAGMLLltwqKLAP---ISIMLQIHP--SMNLDMLLTLALLSTLI-GGWGGLNQTQLRKILAYSSIAH 186
Cdd:PRK05846 237 AhvqapTAGSVLLAGILL----KMGAyglLRFSLPLFPdaSHEFAPIIITLGVIAIIyGALVALAQTDIKKLIAYSSISH 312
|
....*.
gi 529217154 187 MGWMVV 192
Cdd:PRK05846 313 MGFVTL 318
|
|
| ND2 |
MTH00091 |
NADH dehydrogenase subunit 2; Provisional |
98-315 |
8.34e-04 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177154 Cd Length: 273 Bit Score: 40.62 E-value: 8.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 98 IIFALTMKLGMTPFHFWVPEVTQGITLTAGMLLLTWQKLAPISIMLQihpsMNLDMLLTLALLSTLIGGWGGLNQTQLRK 177
Cdd:MTH00091 63 QFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQ----FFSKNFFFLLLFGLLICFFQMFLLKSYKN 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 178 ILAYSSIAHMGWMVVVLMYCppltMLNLL-VYLMLTTTMFTMLNvykstttltlstLWNKNPTITLMILISLLSLGGLPP 256
Cdd:MTH00091 139 LLILSSTESFNWLILSFFFS----FFNVFfLFFYYFLLMLFLIP------------KFNNVNKLNFVSWETLLVFMNLPF 202
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 529217154 257 LTGFLPKWMIVQELTKNNNILLATVMVMMALLNLYFYMRLVYSTSLTMFPVSNNTKMKW 315
Cdd:MTH00091 203 SVTFFVKIFSLSEILKVLGFFLLFLLFLMFLSVLSLSFWLVNLSTKLFLMLFKYNKGFF 261
|
|
| PRK12561 |
PRK12561 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
55-192 |
3.20e-03 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 237137 [Multi-domain] Cd Length: 504 Bit Score: 39.24 E-value: 3.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 55 AATKYFLTQATASMLLMM----------TITINAMYTGQWNITNIYDPLTSTTIIFALTMKLGMTPFHFWVPE------- 117
Cdd:PRK12561 138 AATKFILYTALASIFILVaglalalsgdTFTFDLAELGAKSYPLALELLLYAGFLIAFGVKLPIFPLHTWLPDahgeasa 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 118 ----VTQGITLTAG----------MLLLTWQKLAPISIMLQIhpsMNLDmlltlallstliggWGGLN---QTQLRKILA 180
Cdd:PRK12561 218 pvsmILAGVLLKMGgyalirfnvqMLPDAHVYFAPALAILGV---VNII--------------YGALNafaQDNVKRRLA 280
|
170
....*....|..
gi 529217154 181 YSSIAHMGWMVV 192
Cdd:PRK12561 281 YSSVSHMGFVLL 292
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
48-194 |
4.53e-03 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 38.98 E-value: 4.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 48 NNPRSVEAATKYFLTQATASMLLMMTITINAMYTGQWNIT-------NIYDPLTSTTIIFALTM----KLGMTPFHFWVP 116
Cdd:COG1009 156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSellaaapTILSSPLLTLILLLLLLgafgKSAQFPLHFWLP 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 117 EVTQGIT-----------LTAGMLLLTwqKLAPIsimLQIHPsmnldmllTLALLSTLIG-------GWGGLNQTQLRKI 178
Cdd:COG1009 236 DAMEGPTpvsallhaatmVKAGVYLLA--RLSPL---FALSP--------VWLTVVAIIGaitalfaALIALAQTDIKRV 302
|
170
....*....|....*.
gi 529217154 179 LAYSSIAHMGWMVVVL 194
Cdd:COG1009 303 LAYSTVSQLGYMFLAL 318
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
33-190 |
4.75e-03 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 38.54 E-value: 4.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 33 LEINMLAIIPILTKKNN-PRSVEAATKYFLTQATASMLLMMTItinAMYTGQWNITN-------------IYDPLTSTTI 98
Cdd:PRK08376 150 LEIMSIASYALVAFRNDtWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNmaylavkmsenptVVAKIALALF 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 99 IFALTMKLGMTPFHFWVP----EVTQGITltaGMLLLTWQ----KLAPISIML---QIHPSMNLDMLLTLALLSTLIGGW 167
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPdaypAAPSSIS---AMLLVIKQaglyALARVLFSIygpAINLATVGWVIIILGCLTMFVGVA 303
|
170 180
....*....|....*....|...
gi 529217154 168 GGLNQTQLRKILAYSSIAHMGWM 190
Cdd:PRK08376 304 MAVVQKDVKRLLAYHSVSQIGYM 326
|
|
| ND4 |
MTH00226 |
NADH dehydrogenase subunit 4; Provisional |
98-195 |
8.49e-03 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214466 [Multi-domain] Cd Length: 505 Bit Score: 37.98 E-value: 8.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 98 IIFALTMKLGMTPFHFWVPEV-----TQGITLTAGMLL---------LTW-------QKLAPISIMLQIhpsmnldmllt 156
Cdd:MTH00226 236 IFLAMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLklggyglvrLSWpilplgaQNLAPAVIAMGI----------- 304
|
90 100 110
....*....|....*....|....*....|....*....
gi 529217154 157 lalLSTLIGGWGGLNQTQLRKILAYSSIAHMGWMVVVLM 195
Cdd:MTH00226 305 ---VGIVYGSFATCRQIDVKRLVAYSSVAHMGLVSITLV 340
|
|
| PRK08676 |
PRK08676 |
hydrogenase membrane subunit; Validated |
17-210 |
8.76e-03 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 181537 [Multi-domain] Cd Length: 485 Bit Score: 37.81 E-value: 8.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 17 TTITMISSHWLLIWMGLEINML---AIIPILTKKNNprsVEAATKYFLTQATA------SMLLMMTITINAMYTGQWNIT 87
Cdd:PRK08676 115 ITFAFFSDNLALFWIFAELTTVfsaMLIAILSAREN---IDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNWT 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217154 88 NIYD--PLTSTTIIFA--------LTMKLGMTPFHFWVPE-----------VTQGITLTAGMLLLTwqKLAPISIMLQIH 146
Cdd:PRK08676 192 ELAAhaSLLSPSVLGAsflfifigFLAKSGLVPFHTWLPAayakapsvvsaLLSGTVLNIGIYGIL--RLSALLRQSGAA 269
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 529217154 147 PSMNLDMLLTLALLSTlIGGWGGLNQTQLRKILAYSSIAHMGWMVVVLMYCPPLTMLNLLVYLM 210
Cdd:PRK08676 270 EQFSNVLIGLGIFSIA-VAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHML 332
|
|
|