|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
1.37e-155 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 440.05 E-value: 1.37e-155
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 1 MNPITLLLIMITIFAGTLLTMVSSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATY 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 81 SGQWNITNTHNQFTPITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQVHPWMNLNILLLVALL 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMVGILMFCPSLTMLNLLIYLALTIIMFTILNLNTSTTVLTLSNLWNKTPMI 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 241 ALTTMIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMVMIMTIMALLNLYFYMRLIYSTFLTLFPTFNNMKMKWQFQTM 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330 340
....*....|....*....|....*..
gi 529217336 321 NQTRLMPPLIILSTLSLPLAPTFSTLY 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-268 |
5.42e-21 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 91.22 E-value: 5.42e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 23 SSHWLLMWIGLEINMLAIIP-ILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATYSGQWNITNTHNQFTP------ 95
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 96 -----ITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLL-TWQKLAPISIMLQVHPWMNLNILLLVALLS-----ILV 164
Cdd:pfam00361 81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIRRSLLYLPSSPFIQQILLIlaiisMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 165 GGWGGLNQTQLRKILAYSSIAHMGWMVGILM----FCPSLTMLNLLIYLALTIIMF-----TILNLNTSTTVLTLSNLWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240
|
250 260 270
....*....|....*....|....*....|...
gi 529217336 236 KTPMIALTTMIALLSLGGLPPLTGFLPKWMIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
7-302 |
6.42e-17 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 81.32 E-value: 6.42e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 7 LLIMITIFAGTLLTMvSSHWLLMWIGLEINMLAI-IPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATYSGQWN 85
Cdd:COG1007 106 ALLLFATLGMMLMAS-ANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 86 ITN-----THNQFTPITITIALSM-------KLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQVHPWMNLNI 153
Cdd:COG1007 185 LAGiaaalAAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGL 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 154 LLLVALLSI-------LVGGWGGLNQTQLRKILAYSSIAHMGWM-VGILMFCP---SLTMLNLLIYLALTIIMFTILNL- 221
Cdd:COG1007 265 AADWQLLLAvlavlsmTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPlgvSAALFYLLAYLFMNLGAFAVILLl 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 222 -NTSTTVLTLSN---LWNKTPMIALTTMIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMVMIMTIMALLNLYFYMRLI 297
Cdd:COG1007 345 sRKGGEAEEIEDlagLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVV 424
|
....*
gi 529217336 298 YSTFL 302
Cdd:COG1007 425 KAMYF 429
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
7-303 |
3.24e-16 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 79.22 E-value: 3.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 7 LLIMITIFAgtLLTMVSS-HWLLMWIGLEINMLAI-IPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATYSGQW 84
Cdd:TIGR01770 106 ILLLFALLG--IFLLVSSnDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSL 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 85 NITNTHNQFTPITITI------------ALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQV------- 145
Cdd:TIGR01770 184 NFEDLLLFLSNGMLNIsllllgivlilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyilfg 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 146 -HPWmNLNILLLVALLSILVGGWGGLNQTQLRKILAYSSIAHMGWMVGILMFCPSLTMLNLLIYLALTIIM----FTIL- 219
Cdd:TIGR01770 264 fSEA-WQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMslgaFGVLs 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 220 -----NLNTSTTVLTLSNLWNKTPMIALTTMIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMVMIMTIMALLNLYFYM 294
Cdd:TIGR01770 343 llrsyKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYL 422
|
....*....
gi 529217336 295 RLIYSTFLT 303
Cdd:TIGR01770 423 RVVKVMYFD 431
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
1.37e-155 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 440.05 E-value: 1.37e-155
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 1 MNPITLLLIMITIFAGTLLTMVSSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATY 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 81 SGQWNITNTHNQFTPITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQVHPWMNLNILLLVALL 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMVGILMFCPSLTMLNLLIYLALTIIMFTILNLNTSTTVLTLSNLWNKTPMI 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 241 ALTTMIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMVMIMTIMALLNLYFYMRLIYSTFLTLFPTFNNMKMKWQFQTM 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330 340
....*....|....*....|....*..
gi 529217336 321 NQTRLMPPLIILSTLSLPLAPTFSTLY 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
2.35e-108 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 320.21 E-value: 2.35e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 1 MNPITLLLIMITIFAGTLLTMVSSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATY 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 81 SGQWNITNTHNQFTPITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQVHPwMNLNILLLVALL 160
Cdd:MTH00135 81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAP-TNPTLLITLGLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMVGILMFCPSLTMLNLLIYLALTIIMFTILNLNTSTTVLTLSNLWNKTPMI 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 241 ALTTMIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMVMIMTIMALLNLYFYMRLIYSTFLTLFPTFNNMKMKWQFQTM 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
|
330 340
....*....|....*....|....*.
gi 529217336 321 NQTRLMPPLIILSTLSLPLAPTFSTL 346
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTPAILAL 345
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
2.08e-105 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 312.53 E-value: 2.08e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 1 MNPITLLLIMITIFAGTLLTMVSSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATY 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 81 SGQWNITNTHNQFTPITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQVHPWMNLNILLLVALL 160
Cdd:MTH00112 81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMVGILMFCPSLTMLNLLIYLALTIIMFTILNLNTSTTVLTLSNLWNKTPMI 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 241 ALTTMIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMVMIMTIMALLNLYFYMRLIYSTFLTLFPTFNNMKMKWQFqTM 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRT-KP 319
|
330 340
....*....|....*....|....*.
gi 529217336 321 NQTRLMPPLIILSTLSLPLAPTFSTL 346
Cdd:MTH00112 320 KKNTLTATLTTLSTLLLPLSPMILTI 345
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
1.78e-103 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 307.62 E-value: 1.78e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 1 MNPITLLLIMITIFAGTLLTMVSSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATY 80
Cdd:MTH00070 1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 81 SGQWNITNTHNQFTPITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQVHPWMNLNILLLVALL 160
Cdd:MTH00070 81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMVGILMFCPSLTMLNLLIYLALTIIMFTILNLNTSTTVLTLSNLWNKTPMI 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 241 ALTTMIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMVMIMTIMALLNLYFYMRLIYSTFLTLFPTFNNMKMKWQFQTm 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKN- 319
|
330 340
....*....|....*....|....*..
gi 529217336 321 NQTRLMPPLIILSTLSLPLAPTFSTLY 347
Cdd:MTH00070 320 KTNNLLSLTIILSLMLLPITPTILNLF 346
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
1.38e-76 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 239.10 E-value: 1.38e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 1 MNPITLLLIMITIFAGTLLTMVSSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATY 80
Cdd:MTH00200 1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 81 SGQWNITNTHNQFTPITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQVHPWMNLNILLLVALL 160
Cdd:MTH00200 81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMVGILMFCPSLTMLNLLIYLALTIIMFTILNLNTSTTVLTLSNLWNKTPMI 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 241 ALTTMIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMVMIMTIMALLNLYFYMRLIYSTFLTLFPTFNNMKMKWQfQTM 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWR-TKS 319
|
330 340
....*....|....*....|....*.
gi 529217336 321 NQTRLMPPLIILSTLSLPLAPTFSTL 346
Cdd:MTH00200 320 NSNLLVGLLLLLSILGLPLTPQLLFL 345
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-339 |
7.83e-75 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 234.44 E-value: 7.83e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 1 MNPITLLLIMITIFAGTLLTMVSSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATY 80
Cdd:MTH00041 1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 81 SGQWNITNTHNQFTPITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQVHPWMNLNILLLVALL 160
Cdd:MTH00041 81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMVGILMFCPSLTMLNLLIYLALTIIMFTILNLNTSTTVLTLSNLWNKTPMI 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 241 ALTTMIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMVMIMTIMALLNLYFYMRLIYSTFLTLFPT-----FNNMKMKW 315
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQhsislFSWRNSGN 320
|
330 340
....*....|....*....|....
gi 529217336 316 QFQTMNQTRLMPPLIILSTLSLPL 339
Cdd:MTH00041 321 ITVYGVILSILSSISILGLLLIPL 344
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
1-335 |
8.29e-48 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 163.90 E-value: 8.29e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 1 MNPITLLLIMITIFaGTLLTMVSSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATY 80
Cdd:MTH00144 2 SSPSNLLFLFLMVM-GTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 81 SGQWnitnthnqFTPITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQVHPWMNLNILLLVA-L 159
Cdd:MTH00144 81 SFSW--------FSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVIsV 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 160 LSILVGGWGGLNQTQLRKILAYSSIAHMGWMVGILMFCPSLTMLNLLIYLALTIIMFTILNLNTSTTVLTLSNLwNKTPM 239
Cdd:MTH00144 153 LSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPSYK 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 240 IALTTMIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMVMIMTIMALLNLYFYMRLIYSTFLTLFPTFNNMKMKWQFQT 319
Cdd:MTH00144 232 TGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSS 311
|
330
....*....|....*.
gi 529217336 320 MNQTRLMPPLIILSTL 335
Cdd:MTH00144 312 IISLNLLGGLLFLLLY 327
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
3.08e-46 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 159.99 E-value: 3.08e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 1 MNPITLLLIMITIFAGTLLTMVSSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNAty 80
Cdd:MTH00160 2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNM-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 81 sgqwNITNTHNQFTPITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQVhpwMNLNILLLVALL 160
Cdd:MTH00160 80 ----LNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMVGILMFCPSLTMLNLLIYLALTIIMFTILNLNTSTTVLTLSNLWNKTPMI 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 241 ALTTMIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMVMIMTIMALLNLYFYMRLIYSTFLTlfpTFNNMKMKWQFQTM 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLML---NYNKNKWNLKKKKN 309
|
330 340
....*....|....*....|....*.
gi 529217336 321 NQTRLMPPLIILSTLSLPLAPTFSTL 346
Cdd:MTH00160 310 KFSLILNFLSFISLFGLILSSLLFLL 335
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
5-312 |
1.21e-41 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 148.00 E-value: 1.21e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 5 TLLLIMITIFAGTLLTMVSSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATYSGQW 84
Cdd:MTH00011 7 TMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 85 NItnthnqFTPITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQVHPWMNLNILLLVALLSILV 164
Cdd:MTH00011 87 KN------ITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 165 GGWGGLNQTQLRKILAYSSIAHMGWMVGILMFCPSLTMLNLLIYLALTIIMFTILNLNTSTTVLTLSNLWNKTPMIALTT 244
Cdd:MTH00011 161 GGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 529217336 245 MIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMVMIMTIMALLNLYFYMRLIYStFLTLFPTFNNMK 312
Cdd:MTH00011 241 FIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN-FMYLSPTFSSLK 307
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
8-343 |
2.48e-35 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 130.95 E-value: 2.48e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 8 LIMITIFAGTLLTMVSSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLnaTYSGQWNIT 87
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSL--SFSNLYLSL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 88 NTHnqftpITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQVHPwmNLNILLLVALLSILVGGW 167
Cdd:MTH00197 80 LSV-----VLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGI 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 168 GGLNQTQLRKILAYSSIAHMGWMVGILMFCPSLTMLNLLIYLALTIIMFTILNLNTSTTVLTLSNLWNKTPMIALTTMIA 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 248 LLSLGGLPPLTGFLPKWMIIQELSKNNNIIMVMIMTIMALLNLYFYMRLIYSTFLtlfptfNNMKMKWQFQTMNQTRLMP 327
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI------LSNWMINFLMKINLLYSGL 306
|
330
....*....|....*.
gi 529217336 328 PLIILSTLSLPLAPTF 343
Cdd:MTH00197 307 FILLMMMLPLLMIFTM 322
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
7-267 |
2.26e-24 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 103.17 E-value: 2.26e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 7 LLIMITIFaGTLLTMVSSHWLLMWIGLEINMLAI-IPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATYSGQWN 85
Cdd:MTH00199 101 ILILIVAL-GSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETS 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 86 I----TNTHNQFTPITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQVHPWMNLNILLLVALLS 161
Cdd:MTH00199 180 IqginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSII 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 162 IlvGGWGGLNQTQLRKILAYSSIAHMG---WMVGILMFCP-SLTMLNLLIYLALTIIMFTI-LNLN-TSTTVLTLSNLWN 235
Cdd:MTH00199 260 Y--GAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFESiQASLIYMIIYVIMSICSFSIiLSLKlTKGLIVEVSGLSR 337
|
250 260 270
....*....|....*....|....*....|..
gi 529217336 236 KTPMIALTTMIALLSLGGLPPLTGFLPKWMII 267
Cdd:MTH00199 338 KNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-268 |
5.42e-21 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 91.22 E-value: 5.42e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 23 SSHWLLMWIGLEINMLAIIP-ILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATYSGQWNITNTHNQFTP------ 95
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 96 -----ITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLL-TWQKLAPISIMLQVHPWMNLNILLLVALLS-----ILV 164
Cdd:pfam00361 81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIRRSLLYLPSSPFIQQILLIlaiisMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 165 GGWGGLNQTQLRKILAYSSIAHMGWMVGILM----FCPSLTMLNLLIYLALTIIMF-----TILNLNTSTTVLTLSNLWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240
|
250 260 270
....*....|....*....|....*....|...
gi 529217336 236 KTPMIALTTMIALLSLGGLPPLTGFLPKWMIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
16-297 |
4.20e-18 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 84.31 E-value: 4.20e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 16 GTLLTMVSSHWLLMWIGLEINMLAI-IPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATYSGQWNITNTHNQFT 94
Cdd:MTH00196 5 GILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLSYINLVLN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 95 P-------------ITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQVHPwmNLNILLLVALLS 161
Cdd:MTH00196 85 SgqsfssvsvpigyLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGL--NVNILLIGGLFS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 162 ILVGGWGGLNQTQLRKILAYSSIAHMG---WMVGILMF-CPSLTMLNLLIYLALTIIMFTI-LNLNTSTTVLT-LSNLWN 235
Cdd:MTH00196 163 LFVGAIGALNQTKIKRLLAYSGIGHMGfvlWGIEIGSFeSIQASLVYLFIYIIMSICVFSIiLALNVYKNLIIeFSGLSR 242
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 529217336 236 KTPMIALTTMIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMVMIMTIMALLNLYFYMRLI 297
Cdd:MTH00196 243 RLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIV 304
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
7-302 |
6.42e-17 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 81.32 E-value: 6.42e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 7 LLIMITIFAGTLLTMvSSHWLLMWIGLEINMLAI-IPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATYSGQWN 85
Cdd:COG1007 106 ALLLFATLGMMLMAS-ANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 86 ITN-----THNQFTPITITIALSM-------KLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQVHPWMNLNI 153
Cdd:COG1007 185 LAGiaaalAAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGL 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 154 LLLVALLSI-------LVGGWGGLNQTQLRKILAYSSIAHMGWM-VGILMFCP---SLTMLNLLIYLALTIIMFTILNL- 221
Cdd:COG1007 265 AADWQLLLAvlavlsmTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPlgvSAALFYLLAYLFMNLGAFAVILLl 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 222 -NTSTTVLTLSN---LWNKTPMIALTTMIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMVMIMTIMALLNLYFYMRLI 297
Cdd:COG1007 345 sRKGGEAEEIEDlagLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVV 424
|
....*
gi 529217336 298 YSTFL 302
Cdd:COG1007 425 KAMYF 429
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
7-303 |
3.24e-16 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 79.22 E-value: 3.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 7 LLIMITIFAgtLLTMVSS-HWLLMWIGLEINMLAI-IPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATYSGQW 84
Cdd:TIGR01770 106 ILLLFALLG--IFLLVSSnDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSL 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 85 NITNTHNQFTPITITI------------ALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQV------- 145
Cdd:TIGR01770 184 NFEDLLLFLSNGMLNIsllllgivlilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyilfg 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 146 -HPWmNLNILLLVALLSILVGGWGGLNQTQLRKILAYSSIAHMGWMVGILMFCPSLTMLNLLIYLALTIIM----FTIL- 219
Cdd:TIGR01770 264 fSEA-WQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMslgaFGVLs 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 220 -----NLNTSTTVLTLSNLWNKTPMIALTTMIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMVMIMTIMALLNLYFYM 294
Cdd:TIGR01770 343 llrsyKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYL 422
|
....*....
gi 529217336 295 RLIYSTFLT 303
Cdd:TIGR01770 423 RVVKVMYFD 431
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
5-221 |
9.00e-16 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 77.94 E-value: 9.00e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 5 TLLLIMItifAGTLLTMVSSHWLLMWIGLEINMLAI-IPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATYSGQ 83
Cdd:PRK05777 107 LLVLFAL---LGMMVMVSANDLLTLFLGLELLSLPLyALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGS 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 84 WNITNTHNQFTPIT------------ITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQV------ 145
Cdd:PRK05777 184 LSFAGIAKALADGSgnsllllfglvfLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLlvvafg 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 146 -HPWMNLNILLLVALLSILVGGWGGLNQTQLRKILAYSSIAHMGWM-VGILMFCP---SLTMLNLLIYLALTIIMFTILN 220
Cdd:PRK05777 264 gLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlVGLAAGTAegySAVLFYLLAYLFMTLGAFGVIS 343
|
.
gi 529217336 221 L 221
Cdd:PRK05777 344 L 344
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
5-300 |
5.93e-11 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 63.24 E-value: 5.93e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 5 TLLLIMItifAGTLLTMVSSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATYSGQW 84
Cdd:COG0651 111 PLFLLLL---AGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTL 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 85 NITNTHNQFTPIT----------ITIALSMKLGVTPFHFWVPE-----------VTQGISLLAGM--LLLTWQKLAPISI 141
Cdd:COG0651 188 NMADLAARLAELDpglllaafalLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADP 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 142 MLQVHPWMnlnilLLVALLSILVGGWGGLNQTQLRKILAYSSIAHMGWMVGILMFCPSLTMLNLLIYLALTIIMFTILNL 221
Cdd:COG0651 268 ALFLGTLL-----LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLFL 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 222 NT--------STTVLTLSNLWNKTPMIALTTMIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMVMIMTIMALLNLYFY 293
Cdd:COG0651 343 AAgaieratgTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYF 422
|
....*..
gi 529217336 294 MRLIYST 300
Cdd:COG0651 423 VRIFGRA 429
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
3-267 |
3.81e-09 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 57.95 E-value: 3.81e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 3 PITLLLIMITIFAGTLLTMVSSHWLLMWIGLEINMLAIIPILMKNYKPRST---------EAATKYFLMQATASMLLMFT 73
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 74 IVLNATYSGQ--------------WNITNTHNQFTPITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLapI 139
Cdd:MTH00198 267 CALYFGFTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--T 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 140 SIMLQVHPWMNLNILLLVALLSILVGGWGGLNQTQLRKILAYSSIAHMGWmvgILMFCPSLTMLNL-------LIYLALT 212
Cdd:MTH00198 345 VYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGF---ILIGVSAGTYESLqaswtyaVTYLVSA 421
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 529217336 213 IIMFTIL---------------------NLNTSTTVLTLSNLWNKTPMIALTTMIALLSLGGLPPLTGFLPKWMII 267
Cdd:MTH00198 422 LASFTVIctleefgtrtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
|
|
| NADH_dehy_S2_C |
pfam06444 |
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ... |
291-341 |
4.08e-09 |
|
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.
Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 51.87 E-value: 4.08e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 529217336 291 YFYMRLIYSTFLTLFPTFNNMKMKWQFQTMNQTRLMPPLIILSTLSLPLAP 341
Cdd:pfam06444 1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
49-268 |
2.49e-06 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 49.17 E-value: 2.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 49 KPRSTEAATKYFLMQATASMLLMFTIVLNATYSG---------QWNITNTHNQFTPITITIALSMKLGVTPFHFWVPEV- 118
Cdd:TIGR01972 151 GPNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgtfdllellNLPLPFGVQTWLFLAFFIAFAVKVPLFPLHTWLPDAh 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 119 ----TQGISLLAGMLLltwqKLAPISIM---LQVHPWMNLNILLLVALLSILV---GGWGGLNQTQLRKILAYSSIAHMG 188
Cdd:TIGR01972 231 veapTAGSVILAGVLL----KMGTYGFLrfnLPLFPDASLYFAPVLAALGVIAiiyGALIALAQTDIKRLIAYSSISHMG 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 189 W-MVGILMFCPS------LTMLNLLIYLALTIIMFTILNLNTSTTVLT-LSNLWNKTPMIALTTMIALLSLGGLPPLTGF 260
Cdd:TIGR01972 307 FvLLGIFSFNELgisgavFQMISHGLITAALFLLVGVLYERAHTRDIAkYGGLANKMPVLAAFFMLFAMASLGLPGTSGF 386
|
....*...
gi 529217336 261 LPKWMIIQ 268
Cdd:TIGR01972 387 VGEFLILL 394
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
55-247 |
1.08e-05 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 47.00 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 55 AATKYFLMQATASMLLMFTIVLNATYSGQW--NITNTHNQFTPIT--------ITIALSMKLGVTPFHFWVPEV-----T 119
Cdd:COG1008 162 AAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAAPLPLTaqlllflaFFIAFAVKVPMFPFHTWLPDAhveapT 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 120 QGISLLAGMLL----------------LTWQKLAPISIMLQVhpwmnlnilllvalLSILVGGWGGLNQTQLRKILAYSS 183
Cdd:COG1008 242 AGSVLLAGVLLkmggygllrfalplfpEASAYFAPLLAALGV--------------IGIIYGALVALAQTDLKRLIAYSS 307
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 529217336 184 IAHMGWMV-GILMFCPS------LTMLNLLIYLALTIIMFTILNLNTSTTVLT-LSNLWNKTPMIALTTMIA 247
Cdd:COG1008 308 VSHMGFVLlGIFALNPLglqgavLQMVSHGLITAALFLLVGVLYDRTHTRDIAdLGGLAKRMPVLAALFLLA 379
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
9-263 |
3.92e-05 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 45.43 E-value: 3.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 9 IMITIFAGTLLTMVSSHWLLMWIGLEinMLAIIPILMKNY---KPRSTEAATKYFLMQATASMLLMFTIVLNATYS-GQW 84
Cdd:PRK02504 115 ILLTATLGGMFLSGATELVMIFISLE--TLSIASYLLTGYmkrDPRSNEAALKYLLIGAASSAIFLYGSSLLYGLSgGST 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 85 NITNTHNQFT---PITITIAL-------SMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLA----PISIMLQVHPWMN 150
Cdd:PRK02504 193 QLSAIALALItspSLGLALALvfviagiAFKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFD 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 151 L---NILLLVALLSILVGGWGGLNQTQLRKILAYSSIAHMGW-MVGILMFCP---SLTMLNLLIYLALTIIMFT---ILN 220
Cdd:PRK02504 273 EqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFvMIGLVAGTEagyASMVFYLLAYLFMNLGAFAcviLFS 352
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 529217336 221 LNTSTTVLT-LSNLWNKTPMIALTTMIALLSLGGLPPLTGFLPK 263
Cdd:PRK02504 353 LRTGTDQISdYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
|
|
| PRK12561 |
PRK12561 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
55-196 |
8.86e-05 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 237137 [Multi-domain] Cd Length: 504 Bit Score: 44.25 E-value: 8.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 55 AATKYFLMQATASMLLMFTIVLNATYSGQ--WNITNTHNQFTPITIT--------IALSMKLGVTPFHFWVP----EVTQ 120
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAKSYPLALElllyagflIAFGVKLPIFPLHTWLPdahgEASA 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 121 GIS-LLAGMLLL----------------TWQKLAPISIMLQVhpwMNLNilllvallsilvggWGGLN---QTQLRKILA 180
Cdd:PRK12561 218 PVSmILAGVLLKmggyalirfnvqmlpdAHVYFAPALAILGV---VNII--------------YGALNafaQDNVKRRLA 280
|
170
....*....|....*..
gi 529217336 181 YSSIAHMGW-MVGILMF 196
Cdd:PRK12561 281 YSSVSHMGFvLLGIAAF 297
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
51-263 |
2.47e-04 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 42.68 E-value: 2.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 51 RSTEAATKYFLMQATASMLLMFTIVLNATYSG--------QWNITNTHNQ------FTPITITIALSMKLGVTPFHFWVP 116
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGFSWLYGLSGgeielqeiVNGLINTQMYnspgisIALIFITVGIGFKLSLAPFHQWTP 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 117 EVTQG-----------ISLLAGMLLLTwqklapiSIMLQVHPWMNL---NILLLVALLSILVGGWGGLNQTQLRKILAYS 182
Cdd:CHL00049 239 DVYEGsptpvvaflsvTSKVAASALAT-------RIFDIPFYFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYS 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 183 SIAHMGW-MVGILMFCPSLTMLNLLIYLALTIIM-------FTILNLNTST-TVLTLSNLWNKTPMIALTTMIALLSLGG 253
Cdd:CHL00049 312 SIGQIGYvIIGIIVGDSNDGYASMITYMLFYIFMnlgtfacIVLFGLRTGTdNIRDYAGLYTKDPFLALSLALCLLSLGG 391
|
250
....*....|
gi 529217336 254 LPPLTGFLPK 263
Cdd:CHL00049 392 IPPLAGFFGK 401
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
5-302 |
8.44e-04 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 41.24 E-value: 8.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 5 TLLLIMItifAGTLLTMVSSHWLLMWIGLEINMLAIIPIL-MKNYKPRSTEAATKYFLMQATASMLLMFTIVLnatYSGQ 83
Cdd:PRK08376 125 TLILLLE---LGMLGMAITGDLFNFFVFLEIMSIASYALVaFRNDTWEAIEAGIKYMFVGSLASSMVLLGIAL---LYGQ 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 84 WNITN-----THNQFTPITITI--------ALSMKLGVTPFHFWVPEV-TQGISLLAGMLLLTWQ----KLAPISIML-- 143
Cdd:PRK08376 199 YGTLNmaylaVKMSENPTVVAKialalfiaGLAMKSGAVPVHMWLPDAyPAAPSSISAMLLVIKQaglyALARVLFSIyg 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 144 -QVHPWMNLNILLLVALLSILVGGWGGLNQTQLRKILAYSSIAHMGWM---VGILMFCPSLTMLNLLIYLALTIIMFTIL 219
Cdd:PRK08376 279 pAINLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMllgLGVGLAALGDPAMASYGEIALAGGIYHIV 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217336 220 N--LNTSTTVLT---------------LSNLWNKTPMIALTTMIALLSLGGLPPLTGFLPKWMIIqELSKNNNIIMVMIM 282
Cdd:PRK08376 359 NhaLYKALLFLTagaviyetgtrnlneLGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIY-ESSALFNPILGVIA 437
|
330 340
....*....|....*....|
gi 529217336 283 TIMALLNLYFYMRLIYSTFL 302
Cdd:PRK08376 438 MIGSVLTLASFVKVFHTAFF 457
|
|
| |
