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Conserved domains on  [gi|557940302|ref|YP_008802668|]
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2C [Feline sakobuvirus A]

Protein Classification

RNA helicase domain-containing protein( domain architecture ID 10468696)

RNA helicase domain-containing protein may be involved in duplex unwinding during viral RNA replication

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RNA_helicase pfam00910
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding ...
 129-231 1.46e-39

RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.


:

Pssm-ID: 459992  Cd Length: 102  Bit Score: 135.04  E-value: 1.46e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557940302  129 VYIHGAPGVGKSLVASLLARTLAAKLGTGPDDFYAPSSADcQHYDGYTGQPVHYIDDIGQDVEGRDWADFPQLVCSSPFV 208
Cdd:pfam00910   1 IWLYGPPGCGKSTLAKYLARALLKKLGLPKDSVYSRNPDD-DFWDGYTGQPVVIIDDFGQNPDGPDEAELIRLVSSTPYP 79

                          90       100
                  ....*....|....*....|...
gi 557940302  209 LPMASLEQKGTYYTSRVIIITSN 231
Cdd:pfam00910  80 PPMAALEEKGTPFTSKFVIVTSN 102
 
Name Accession Description Interval E-value
RNA_helicase pfam00910
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding ...
 129-231 1.46e-39

RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.


Pssm-ID: 459992  Cd Length: 102  Bit Score: 135.04  E-value: 1.46e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557940302  129 VYIHGAPGVGKSLVASLLARTLAAKLGTGPDDFYAPSSADcQHYDGYTGQPVHYIDDIGQDVEGRDWADFPQLVCSSPFV 208
Cdd:pfam00910   1 IWLYGPPGCGKSTLAKYLARALLKKLGLPKDSVYSRNPDD-DFWDGYTGQPVVIIDDFGQNPDGPDEAELIRLVSSTPYP 79

                          90       100
                  ....*....|....*....|...
gi 557940302  209 LPMASLEQKGTYYTSRVIIITSN 231
Cdd:pfam00910  80 PPMAALEEKGTPFTSKFVIVTSN 102
Pgk2 COG2074
2-phosphoglycerate kinase/Mevalonate-3-phosphate 5-kinase [Carbohydrate transport and ...
 123-150 5.03e-04

2-phosphoglycerate kinase/Mevalonate-3-phosphate 5-kinase [Carbohydrate transport and metabolism, Lipid transport and metabolism];


Pssm-ID: 441677  Cd Length: 207  Bit Score: 40.70  E-value: 5.03e-04
                         10        20
                 ....*....|....*....|....*...
gi 557940302 123 RPQPVVVYIHGAPGVGKSLVASLLARTL 150
Cdd:COG2074    3 MKRPRIILIGGASGVGKSTIAAELARRL 30
PRK12337 PRK12337
2-phosphoglycerate kinase; Provisional
 124-150 5.05e-03

2-phosphoglycerate kinase; Provisional


Pssm-ID: 183452 [Multi-domain]  Cd Length: 475  Bit Score: 38.60  E-value: 5.05e-03
                         10        20
                 ....*....|....*....|....*..
gi 557940302 124 PQPVVVYIHGAPGVGKSLVASLLARTL 150
Cdd:PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRL 279
 
Name Accession Description Interval E-value
RNA_helicase pfam00910
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding ...
 129-231 1.46e-39

RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.


Pssm-ID: 459992  Cd Length: 102  Bit Score: 135.04  E-value: 1.46e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557940302  129 VYIHGAPGVGKSLVASLLARTLAAKLGTGPDDFYAPSSADcQHYDGYTGQPVHYIDDIGQDVEGRDWADFPQLVCSSPFV 208
Cdd:pfam00910   1 IWLYGPPGCGKSTLAKYLARALLKKLGLPKDSVYSRNPDD-DFWDGYTGQPVVIIDDFGQNPDGPDEAELIRLVSSTPYP 79

                          90       100
                  ....*....|....*....|...
gi 557940302  209 LPMASLEQKGTYYTSRVIIITSN 231
Cdd:pfam00910  80 PPMAALEEKGTPFTSKFVIVTSN 102
Pgk2 COG2074
2-phosphoglycerate kinase/Mevalonate-3-phosphate 5-kinase [Carbohydrate transport and ...
 123-150 5.03e-04

2-phosphoglycerate kinase/Mevalonate-3-phosphate 5-kinase [Carbohydrate transport and metabolism, Lipid transport and metabolism];


Pssm-ID: 441677  Cd Length: 207  Bit Score: 40.70  E-value: 5.03e-04
                         10        20
                 ....*....|....*....|....*...
gi 557940302 123 RPQPVVVYIHGAPGVGKSLVASLLARTL 150
Cdd:COG2074    3 MKRPRIILIGGASGVGKSTIAAELARRL 30
PRK12337 PRK12337
2-phosphoglycerate kinase; Provisional
 124-150 5.05e-03

2-phosphoglycerate kinase; Provisional


Pssm-ID: 183452 [Multi-domain]  Cd Length: 475  Bit Score: 38.60  E-value: 5.05e-03
                         10        20
                 ....*....|....*....|....*..
gi 557940302 124 PQPVVVYIHGAPGVGKSLVASLLARTL 150
Cdd:PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRL 279
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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