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Conserved domains on  [gi|584593740|ref|YP_009002385|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Orinhippus tibetanus]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009622)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 5-310 3.28e-136

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177241  Cd Length: 306  Bit Score: 387.97  E-value: 3.28e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740   5 LIMFILNFFLLVVCVLISVAFLTLLERSVLGYIQIRKGPNSVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFN 84
Cdd:MTH00193   1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  85 LMISLFIWSIFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLIG 164
Cdd:MTH00193  81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 165 SFNMFNFMNFQIYCWFIVFCFPLALSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLF 244
Cdd:MTH00193 161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 584593740 245 SLVFLGGDFYSFIFFIKLSFVSFFFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLFFFIGLSVMF 310
Cdd:MTH00193 241 VLMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 5-310 3.28e-136

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 387.97  E-value: 3.28e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740   5 LIMFILNFFLLVVCVLISVAFLTLLERSVLGYIQIRKGPNSVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFN 84
Cdd:MTH00193   1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  85 LMISLFIWSIFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLIG 164
Cdd:MTH00193  81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 165 SFNMFNFMNFQIYCWFIVFCFPLALSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLF 244
Cdd:MTH00193 161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 584593740 245 SLVFLGGDFYSFIFFIKLSFVSFFFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLFFFIGLSVMF 310
Cdd:MTH00193 241 VLMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
NADHdh pfam00146
NADH dehydrogenase;
13-302 3.82e-90

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 270.88  E-value: 3.82e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740   13 FLLVVCVLISVAFLTLLERSVLGYIQIRKGPNSVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFNLMISLFIW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740   93 SIFPYMTYM--CSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLIGSFNMFN 170
Cdd:pfam00146  83 AVIPFGPGLvlADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  171 FMNFQIYCWFIVFCFPLALSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLFSLVFLG 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 584593740  251 G------DFYSFIFFIKLSFVSFFFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLFF 302
Cdd:pfam00146 243 GwlgpfpLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 4-311 7.51e-85

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 258.14  E-value: 7.51e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740   4 DLIMFILNFFLLVVCVLISVAFLTLLERSVLGYIQIRKGPNSVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVF 83
Cdd:COG1005    7 PLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPIL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  84 NLMISLFIWSIFPY--MTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIL 161
Cdd:COG1005   87 AFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVL 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 162 LIGSFNMFNFMNFQI-YCWFIVFCFPLALSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFM 240
Cdd:COG1005  167 LAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLV 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 241 SMLFSLVFLGG-------DFYSFI-----FFIKLSFVSFFFIWVRGTLPRFRYDKLMYLAWSSFLPLSLnFLFFFIGLSV 308
Cdd:COG1005  247 SALATTLFLGGwlgpfpiLPLGGLpgilwFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSL-VNLVLTAAVV 325


                 ...
gi 584593740 309 MFF 311
Cdd:COG1005  326 LLF 328
F420_dehyd_FpoH NF040610
F420H2 dehydrogenase subunit FpoH;
15-310 2.84e-40

F420H2 dehydrogenase subunit FpoH;


Pssm-ID: 468582  Cd Length: 339  Bit Score: 143.69  E-value: 2.84e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  15 LVVCVLISVAFLTLLERSVLGYIQIRKGPNSVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFnLMISLFIWSI 94
Cdd:NF040610  19 LIGAVFGGAMLAVWLERKLSADIQFRYGPNRVGPWGILQLVADAIKLFTKEDIIPRKADKLLYVSAPIV-AMGSVFLMLV 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  95 -----------FPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLI 163
Cdd:NF040610  98 aipfgaviingVEYPLVVTNMDISILYIEAVSAISIIGIFMAGYSSNNKYSLLGAFRNFARMIGYEVPLGICVVSVAIMA 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 164 GSFNMFNFMNFQIYCWFIVFCFPLALSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSML 243
Cdd:NF040610 178 GSLNIVEIVEAQSPIWFAFLQPIGFIVFFIALMADMGRLPFDQNEAEEELIAGWITEYSGMRFGLGFFAEYIHLILGSFL 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 244 FSLVFLGG----------DFYSFI-----FFIKLSFVSFFFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLFFFIGLSV 308
Cdd:NF040610 258 VVLLFLGGwnlpgfvtdiPVLGIIlptlfFLMKVAIVLMFIIMIRWAVPRFRIDQVVDLSWKRLLPLSLLNLGWAIALGL 337


                 ..
gi 584593740 309 MF 310
Cdd:NF040610 338 YL 339
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 5-310 3.28e-136

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 387.97  E-value: 3.28e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740   5 LIMFILNFFLLVVCVLISVAFLTLLERSVLGYIQIRKGPNSVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFN 84
Cdd:MTH00193   1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  85 LMISLFIWSIFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLIG 164
Cdd:MTH00193  81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 165 SFNMFNFMNFQIYCWFIVFCFPLALSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLF 244
Cdd:MTH00193 161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 584593740 245 SLVFLGGDFYSFIFFIKLSFVSFFFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLFFFIGLSVMF 310
Cdd:MTH00193 241 VLMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 6-307 1.89e-118

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 343.17  E-value: 1.89e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740   6 IMFILNFFLLVVCVLISVAFLTLLERSVLGYIQIRKGPNSVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFNL 85
Cdd:MTH00225   1 MSFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  86 MISLFIWSIFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLIGS 165
Cdd:MTH00225  81 ILSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 166 FNMFNFMNFQIYCWFIVFCFPLALSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLFS 245
Cdd:MTH00225 161 YNLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTS 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 584593740 246 LVFLGGDFY--SFIFFIKLSFVSFFFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLFFFIGLS 307
Cdd:MTH00225 241 ILFFGGFFVtiDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLIIL 304
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 6-307 4.88e-110

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 321.82  E-value: 4.88e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740   6 IMFILNFFLLVVCVLISVAFLTLLERSVLGYIQIRKGPNSVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFNL 85
Cdd:MTH00143   1 LVSLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  86 MISLFIWSIFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLIGS 165
Cdd:MTH00143  81 ILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 166 FNMFNFMNFQIYCWFIVFCFPLALSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLFS 245
Cdd:MTH00143 161 FSFIEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTV 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 584593740 246 LVFLGGDF-----YSFIFFIKLSFVSFFFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLFFFIGLS 307
Cdd:MTH00143 241 VLFFGGSSvlfllGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILVLFVVLV 307
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 2-312 1.59e-99

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 295.38  E-value: 1.59e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740   2 MYDLIMFILNFFLLVVCVLISVAFLTLLERSVLGYIQIRKGPNSVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSP 81
Cdd:MTH00071   1 MMTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  82 VFNLMISLFIWSIFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIL 161
Cdd:MTH00071  81 TMALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 162 LIGSFNMFNFMNFQIYCWFIVFCFPLALSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMS 241
Cdd:MTH00071 161 LTGGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMN 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 584593740 242 MLFSLVFLGGDFY-------SFIFFIKLSFVSFFFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLFFFIGLSVMFFS 312
Cdd:MTH00071 241 TLSTILFLGSTYNhlqpelsTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLG 318
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 5-313 2.28e-99

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 294.90  E-value: 2.28e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740   5 LIMFILNFFLLVVCVLISVAFLTLLERSVLGYIQIRKGPNSVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFN 84
Cdd:MTH00218   1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  85 LMISLFIWSIFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLIG 164
Cdd:MTH00218  81 LTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 165 SFNMFNFMNFQIYCWFIVFCFPLALSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLF 244
Cdd:MTH00218 161 GFSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLS 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 584593740 245 SLVFLGGDFYSFIFFIKLSFVSFFFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLFFFIGLSVMFFSM 313
Cdd:MTH00218 241 VILFLGTSLTTINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASL 309
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 7-312 1.36e-97

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 290.37  E-value: 1.36e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740   7 MFILNFFLLVVCVLISVAFLTLLERSVLGYIQIRKGPNSVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFNLM 86
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  87 ISLFIWSIFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLIGSF 166
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 167 NMFNFMNFQIYCWFIVFCFPLALSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLFSL 246
Cdd:MTH00104 161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 584593740 247 VFLGG-------DFYSFIFFIKLSFVSFFFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLFFFIGLSVMFFS 312
Cdd:MTH00104 241 LFLGAfhnpympELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTAS 313
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 5-306 2.69e-97

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 289.33  E-value: 2.69e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740   5 LIMFILNFFLLVVCVLISVAFLTLLERSVLGYIQIRKGPNSVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFN 84
Cdd:MTH00195   1 WMISVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  85 LMISLFIWSIFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLIG 164
Cdd:MTH00195  81 LALALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 165 SFNMFNFMNFQIYCWFIVFCFPLALSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLF 244
Cdd:MTH00195 161 SFDFTIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLT 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 584593740 245 SLVFLGGDfYSFIFFIKLSFVSFFFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLFFFIGL 306
Cdd:MTH00195 241 TILFLGGG-GTIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAI 301
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 2-313 5.09e-97

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 289.10  E-value: 5.09e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740   2 MYDLIMFILNFFLLVVCVLISVAFLTLLERSVLGYIQIRKGPNSVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSP 81
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  82 VFNLMISLFIWSIFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIL 161
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 162 LIGSFNMFNFMNFQIYCWFIVFCFPLALSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMS 241
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 584593740 242 MLFSLVFL-------GGDFYSFIFFIKLSFVSFFFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLFFFIGLSVMFFSM 313
Cdd:MTH00111 241 TLTTILFLnpstlnlPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGL 319
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 3-312 3.89e-96

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 286.87  E-value: 3.89e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740   3 YDLIMFILNFFLLVVCVLISVAFLTLLERSVLGYIQIRKGPNSVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPV 82
Cdd:MTH00040   1 MSVILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  83 FNLMISLFIWSIFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILL 162
Cdd:MTH00040  81 LFLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 163 IGSFNMFNFMNFQIYCWFIVFCFPLALSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSM 242
Cdd:MTH00040 161 SGSFSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNL 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 584593740 243 LFSLVFLGGDFYSFIFF--------IKLSFVSFFFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLFFFIGLSVMFFS 312
Cdd:MTH00040 241 LSVILFLGGGSPFNEIFpiniiivgIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNI 318
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-310 1.01e-94

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 283.42  E-value: 1.01e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740   1 MMYDLIMFILNFFLLVVCVLISVAFLTLLERSVLGYIQIRKGPNSVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFS 80
Cdd:MTH00134   1 MLSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  81 PVFNLMISLFIWSIFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLI 160
Cdd:MTH00134  81 PMLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 161 LLIGSFNMFNFMNFQIYCWFIVFCFPLALSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFM 240
Cdd:MTH00134 161 IFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 584593740 241 SMLFSLVFLGGDFY-------SFIFFIKLSFVSFFFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLFFFIGLSVMF 310
Cdd:MTH00134 241 NTLSAILFLGASHIptlpeltTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAF 317
NADHdh pfam00146
NADH dehydrogenase;
13-302 3.82e-90

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 270.88  E-value: 3.82e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740   13 FLLVVCVLISVAFLTLLERSVLGYIQIRKGPNSVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFNLMISLFIW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740   93 SIFPYMTYM--CSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLIGSFNMFN 170
Cdd:pfam00146  83 AVIPFGPGLvlADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  171 FMNFQIYCWFIVFCFPLALSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLFSLVFLG 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 584593740  251 G------DFYSFIFFIKLSFVSFFFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLFF 302
Cdd:pfam00146 243 GwlgpfpLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 6-310 2.28e-87

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 264.34  E-value: 2.28e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740   6 IMFILNFFLLVVCVLISVAFLTLLERSVLGYIQIRKGPNSVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFNL 85
Cdd:MTH00010   3 ISFFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  86 MISLFIWSIFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLIGS 165
Cdd:MTH00010  83 ILALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQT 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 166 FNMFNFMNFQiYCWFIVFCFPLALSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLFS 245
Cdd:MTH00010 163 FSFSKIIMSQ-YSWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTS 241

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 584593740 246 LVFLGGDFYSFI----FFIKLSFVSFFFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLFFFIGLSVMF 310
Cdd:MTH00010 242 VFFTSFIPSIFIsdlmLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMISIPIMFLL 310
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 4-311 7.51e-85

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 258.14  E-value: 7.51e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740   4 DLIMFILNFFLLVVCVLISVAFLTLLERSVLGYIQIRKGPNSVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVF 83
Cdd:COG1005    7 PLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPIL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  84 NLMISLFIWSIFPY--MTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIL 161
Cdd:COG1005   87 AFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVL 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 162 LIGSFNMFNFMNFQI-YCWFIVFCFPLALSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFM 240
Cdd:COG1005  167 LAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLV 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 241 SMLFSLVFLGG-------DFYSFI-----FFIKLSFVSFFFIWVRGTLPRFRYDKLMYLAWSSFLPLSLnFLFFFIGLSV 308
Cdd:COG1005  247 SALATTLFLGGwlgpfpiLPLGGLpgilwFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSL-VNLVLTAAVV 325


                 ...
gi 584593740 309 MFF 311
Cdd:COG1005  326 LLF 328
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 1-306 2.62e-83

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 254.27  E-value: 2.62e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740   1 MMYDLIMFILNFFLLVVCVLISVAFLTLLERSVLGYIQIRKGPNSVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFS 80
Cdd:MTH00216   1 MMVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  81 PVFNLMISLFIWSIFPYM--TYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLS 158
Cdd:MTH00216  81 PVLSFTLALIVWGVIPYErgVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIIS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 159 LILLIGSFNMFNFMNFQI-YCWFIVFCFPLALSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSI 237
Cdd:MTH00216 161 VLLCVGSLSITEIVLAQNnGIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHI 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 584593740 238 IFMSMLFSLVFLGG--------DFYSFIFFIKLSFVSFFFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLFFFIGL 306
Cdd:MTH00216 241 ILMSCLTTILFLGGwlspikyfKGGAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASV 317
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 5-310 8.09e-83

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 253.11  E-value: 8.09e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740   5 LIMFILNFFLLVVCVLISVAFLTLLERSVLGYIQIRKGPNSVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFN 84
Cdd:MTH00054   1 MGIIIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  85 LMISLFIWSIFPYMT--YMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILL 162
Cdd:MTH00054  81 LTLAFIAWGVIPYGEgvVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLC 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 163 IGSFNMFNFMNFQIYCWFIVFCFPLALSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSM 242
Cdd:MTH00054 161 VGSLNLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMST 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 584593740 243 LFSLVFLGGDFYSFI----------FFIKLSFVSFFFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLFFFIGLSVMF 310
Cdd:MTH00054 241 FGVILFLGGWLVISGptsyfsnfvwFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGF 318
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
5-297 3.19e-78

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 241.25  E-value: 3.19e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740   5 LIMFILNFFLLVVCVLISVAFLTLLERSVLGYIQIRKGPNSVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFN 84
Cdd:PRK06076   9 LLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIA 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  85 LMISLFIWSIFPYMTY--MCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILL 162
Cdd:PRK06076  89 FIPAFLAWAVIPFGPElvIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLL 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 163 IGSFNMFNFMNFQIYCWFIVFCFPLALSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSM 242
Cdd:PRK06076 169 AGSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSA 248

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 584593740 243 LFSLVFLGGdFYSFI-----------FFIKLSFVSFFFIWVRGTLPRFRYDKLMYLAWSSFLPLSL 297
Cdd:PRK06076 249 LITTLFLGG-WLPPFplgggipgaiwFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSL 313
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 2-310 2.41e-68

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 216.81  E-value: 2.41e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740   2 MYDLIMFILNFFLLVVCVLISVAFLTLLERSVLGYIQIRKGPNSVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSP 81
Cdd:MTH00029   3 IYSYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAP 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  82 VFNLMISLFIWSIFPY--MTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSL 159
Cdd:MTH00029  83 IISFTLAILAWAIVTMdqGVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISV 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 160 ILLIGSFNMFNFMNFQIYCWFIVFCFPLALSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIF 239
Cdd:MTH00029 163 ILCVGSLNISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIIL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 240 MSMLFSLVFLGG-----------------------DFYSFIFFIKLSFVSFFFIWVRGTLPRFRYDKLMYLAWSSFLPLS 296
Cdd:MTH00029 243 MSCMMTIFFLGGwlspldgiptppeafsifeqiasSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLS 322

                        330
                 ....*....|....
gi 584593740 297 LNFLFFFIGLSVMF 310
Cdd:MTH00029 323 LGLVILTAGILIGF 336
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 11-308 1.51e-56

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 184.33  E-value: 1.51e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  11 NFFLLVVCVLISVAFLTLLERSVLGYIQIRKGPNSVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFNLMISLF 90
Cdd:MTH00090   1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  91 IWSIFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLIGSFNMFN 170
Cdd:MTH00090  81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 171 FMNFqiycWFIVFCFPlalsFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLFSLVFLg 250
Cdd:MTH00090 161 SFSL----SLFVIYLP----FLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFF- 231

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 584593740 251 gDFYSFIFFIKLSFVsfffIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLFFFIGLSV 308
Cdd:MTH00090 232 -KFSFLMLFLIFSLL----IFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVLFI 284
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 6-304 7.93e-45

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 154.31  E-value: 7.93e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740   6 IMFILNFFLLVVCVLIsVAFLTLLERSVLGYIQIRKGPNSVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFNL 85
Cdd:MTH00058   2 FGLVSGLEGLLIILLL-VAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  86 MISLFIWSIFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLIGS 165
Cdd:MTH00058  81 LLVVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 166 FNMFNFMNfqiYCWFIVFCFPLALSFFASC-LAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLF 244
Cdd:MTH00058 161 YSLVDFYY---SGWLSVLLFPLIYILWLVCiLCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLG 237

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 245 SLVFLGGDFYSFIFFIKLsfvsFFFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLFFFI 304
Cdd:MTH00058 238 SVLFFGGGFVSIMLLFHL----LFFMWARATLPRVRYDYFVNFFWEYCLVLLILSLFVIV 293
F420_dehyd_FpoH NF040610
F420H2 dehydrogenase subunit FpoH;
15-310 2.84e-40

F420H2 dehydrogenase subunit FpoH;


Pssm-ID: 468582  Cd Length: 339  Bit Score: 143.69  E-value: 2.84e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  15 LVVCVLISVAFLTLLERSVLGYIQIRKGPNSVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPVFnLMISLFIWSI 94
Cdd:NF040610  19 LIGAVFGGAMLAVWLERKLSADIQFRYGPNRVGPWGILQLVADAIKLFTKEDIIPRKADKLLYVSAPIV-AMGSVFLMLV 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  95 -----------FPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLI 163
Cdd:NF040610  98 aipfgaviingVEYPLVVTNMDISILYIEAVSAISIIGIFMAGYSSNNKYSLLGAFRNFARMIGYEVPLGICVVSVAIMA 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 164 GSFNMFNFMNFQIYCWFIVFCFPLALSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSML 243
Cdd:NF040610 178 GSLNIVEIVEAQSPIWFAFLQPIGFIVFFIALMADMGRLPFDQNEAEEELIAGWITEYSGMRFGLGFFAEYIHLILGSFL 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 244 FSLVFLGG----------DFYSFI-----FFIKLSFVSFFFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLFFFIGLSV 308
Cdd:NF040610 258 VVLLFLGGwnlpgfvtdiPVLGIIlptlfFLMKVAIVLMFIIMIRWAVPRFRIDQVVDLSWKRLLPLSLLNLGWAIALGL 337


                 ..
gi 584593740 309 MF 310
Cdd:NF040610 338 YL 339
ndhA CHL00032
NADH dehydrogenase subunit 1
 3-297 1.34e-30

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 118.13  E-value: 1.34e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740   3 YDLIMFILNFFLLVVCVLISVAFLTLLERSVLGYIQIRKGPNSVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYFSPV 82
Cdd:CHL00032  24 YGLIWILVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPS 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  83 FNLMISLFIWSIFP--YMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLI 160
Cdd:CHL00032 104 IAVISILLSYLVIPfgYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSIS 183

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 161 LLIGSFNMFNFMNFQ----IYCW--------FIVFcfplalsfFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTL 228
Cdd:CHL00032 184 LLSNSLSTVDIVEAQskygFWGWnlwrqpigFIVF--------LISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGL 255

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 229 IFLAEYTSIIFMSMLFSLVFLGG-----------DFYS--------------FIFFIKLSFVSFFFIWVRGTLPRFRYDK 283
Cdd:CHL00032 256 FYVASYLNLLVSSLFVTVLYLGGwnlsipyifipELFEinktggvfgttigiFITLAKTYLFLFISITTRWTLPRLRMDQ 335

                        330
                 ....*....|....
gi 584593740 284 LMYLAWSSFLPLSL 297
Cdd:CHL00032 336 LLNLGWKFLLPISL 349
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
6-304 1.63e-20

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 89.47  E-value: 1.63e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740   6 IMFILNFFLLVVCVLISVAFLTLLERSVLGYIQIRKGPnsvgflGIPQPFSDAIKLICKEQPIPfMSNYFLYYFSPVFNL 85
Cdd:COG0650    1 MMLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVP-ETASWLFRAAPYVAL 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740  86 MISLFIWSIFPYMTYMCSFSYG--FLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLI 163
Cdd:COG0650   74 AAMLLAALLVPVLTTGPPLSFSgdLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLA 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 164 GSFNMFNFMNFQI---YCWFIVFCFPLALSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFM 240
Cdd:COG0650  154 GSTSLSDIVAYQAahgPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVL 233

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584593740 241 SMLFSLVFLGGDFYS------FIFFIKLSFVSFFFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLFFFI 304
Cdd:COG0650  234 LSLFVNLFLPWGIALtlllalLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLAVL 303
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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