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Conserved domains on  [gi|589144546|ref|YP_009003913|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Humphaplotropis culaishanensis (nomen nudum)]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009596)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 5.78e-41

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 131.44  E-value: 5.78e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144546   3 MLSMSFMISFLVPMLVMLLATILSKKIINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIVLK 82
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 589144546  83 SSNLMIWTSATMFFIMILLGGLYHEWNQGALQW 115
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 5.78e-41

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 131.44  E-value: 5.78e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144546   3 MLSMSFMISFLVPMLVMLLATILSKKIINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIVLK 82
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 589144546  83 SSNLMIWTSATMFFIMILLGGLYHEWNQGALQW 115
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 7.18e-27

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 95.18  E-value: 7.18e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144546   19 MLLATILSKKIINdREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIVLKSSNLMIWTSAtMFFIM 98
Cdd:pfam00507   1 LLLSRLLGPKRPN-PEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEM-LIFIA 78

                          90
                  ....*....|....*.
gi 589144546   99 ILLGGLYHEWNQGALQ 114
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 8-115 7.18e-23

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 85.56  E-value: 7.18e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144546   8 FMISFLVPMLVMLLATILSKKIiNDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIVLKSSNLM 87
Cdd:COG0838   12 LLVALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWF 90

                         90       100
                 ....*....|....*....|....*...
gi 589144546  88 IWTSAtMFFIMILLGGLYHEWNQGALQW 115
Cdd:COG0838   91 GLIEM-LVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 5.78e-41

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 131.44  E-value: 5.78e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144546   3 MLSMSFMISFLVPMLVMLLATILSKKIINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIVLK 82
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 589144546  83 SSNLMIWTSATMFFIMILLGGLYHEWNQGALQW 115
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-117 8.85e-41

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 131.13  E-value: 8.85e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144546   1 MMMLSMSFMISFLVPMLVMLLATILSKKIINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIV 80
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 589144546  81 LKSSNLMIWTSATMFFIMILLGGLYHEWNQGALQWAE 117
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-117 1.11e-38

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 125.88  E-value: 1.11e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144546   1 MMMLSMSFMISFLVPMLVMLLATILSKKIINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIV 80
Cdd:MTH00202   1 MLLILFMSILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 589144546  81 LKSSNLMIWTSATMFFIMILLGGLYHEWNQGALQWAE 117
Cdd:MTH00202  81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-116 1.11e-34

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 115.73  E-value: 1.11e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144546   1 MMMLSMSFMISFLVPMLVMLLATILSKKIINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIV 80
Cdd:MTH00012   1 MSLMMIPMMISLILPPLVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 589144546  81 LKSSNLMIWTSATMFFIMILLGGLYHEWNQGALQWA 116
Cdd:MTH00012  81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 2-117 2.63e-29

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 101.94  E-value: 2.63e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144546   2 MMLSMSFMISFLVPMLVMLLATILSKKIINdREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIVL 81
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIY-SEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAS 79

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 589144546  82 KSSNLMIWTSATMFFIMILLGGLYHEWNQGALQWAE 117
Cdd:MTH00106  80 QTNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-117 1.26e-28

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 100.06  E-value: 1.26e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144546   1 MMMLSMSFMISFLVPMLVMLLATILSKKIInDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIV 80
Cdd:MTH00042   1 MTNLIFFLLIILILTSLLLLAGHFLPSRSP-DLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPA 79

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 589144546  81 LKSSNLMIWTSATMFFIMILLGGLYHEWNQGALQWAE 117
Cdd:MTH00042  80 TLITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-116 6.72e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 98.41  E-value: 6.72e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144546   1 MMMLSMsFMISFLVPMLVMLLATILSKkIINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIV 80
Cdd:MTH00113   1 MNLISM-LTISLALSTILTTLNFWLTQ-TKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWA 78

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 589144546  81 LKSSNLMIWTSATMFFIMILLGGLYHEWNQGALQWA 116
Cdd:MTH00113  79 INLTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 7.18e-27

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 95.18  E-value: 7.18e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144546   19 MLLATILSKKIINdREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIVLKSSNLMIWTSAtMFFIM 98
Cdd:pfam00507   1 LLLSRLLGPKRPN-PEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEM-LIFIA 78

                          90
                  ....*....|....*.
gi 589144546   99 ILLGGLYHEWNQGALQ 114
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-117 9.80e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 95.37  E-value: 9.80e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144546   1 MMMLSMSFMISFLVPMLVMLLATILSKkIINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPI--- 77
Cdd:MTH00136   1 MNLITTILTITIALSLILAIVSFWLPQ-MTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLpwg 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 589144546  78 VIVLKSSNLMIWTSAtmffIMILLG-GLYHEWNQGALQWAE 117
Cdd:MTH00136  80 DQLPSPLLTFFWATA----VLILLTlGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 1-117 3.62e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 91.21  E-value: 3.62e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144546   1 MMMLSMSFMISFLVPMLVMLLATILSkkiinDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPI--- 77
Cdd:MTH00069   3 MLMLLISTILSLILITISFWLPLNNP-----DSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTpwa 77

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 589144546  78 VIVLKSSNLMIWTSatmfFIMILLG-GLYHEWNQGALQWAE 117
Cdd:MTH00069  78 SQLNTPTNTLFWST----LILILLTlGLIYEWIQGGLEWAE 114
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 2-115 3.74e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 91.11  E-value: 3.74e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144546   2 MMLSMSFMISFLVPMLVMLLATILSKKIINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIVL 81
Cdd:MTH00203   1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 589144546  82 KSSNLMIWtsATMFFIMILLGGLYHEWNQGALQW 115
Cdd:MTH00203  81 QLSSLSLL--LAFLFLILLTLGLIYEWLQGGLEW 112
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 8-115 7.18e-23

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 85.56  E-value: 7.18e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144546   8 FMISFLVPMLVMLLATILSKKIiNDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIVLKSSNLM 87
Cdd:COG0838   12 LLVALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWF 90

                         90       100
                 ....*....|....*....|....*...
gi 589144546  88 IWTSAtMFFIMILLGGLYHEWNQGALQW 115
Cdd:COG0838   91 GLIEM-LVFIAILLVGLIYAWKKGALEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 8-116 1.42e-22

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 84.92  E-value: 1.42e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144546   8 FMISFLVPMLVMLLATILSKKIiNDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIVLKSSNLM 87
Cdd:PRK06602  15 LIVAIGLGILLLVAGKLLGPRA-PDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFREIGWL 93

                         90       100
                 ....*....|....*....|....*....
gi 589144546  88 IWTSAtMFFIMILLGGLYHEWNQGALQWA 116
Cdd:PRK06602  94 GFVEA-MIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 8-115 6.98e-18

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 72.79  E-value: 6.98e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144546   8 FMISFLVPMLVMLLATILSKKIiNDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIVLKSSNLM 87
Cdd:MTH00018   7 LIFSVVLSALFSGASYFLGVKQ-PDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQIAPF 85

                         90       100
                 ....*....|....*....|....*....
gi 589144546  88 -IWTsaTMFFIMILLGGLYHEWNQGALQW 115
Cdd:MTH00018  86 gFWT--MVGFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 32-115 1.45e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 72.05  E-value: 1.45e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144546  32 DREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIVLKSSNLM-IWTsaTMFFIMILLGGLYHEWNQ 110
Cdd:MTH00055  35 DSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGLFgFWV--MYLFLIILTIGLIYEWVK 112


                 ....*
gi 589144546 111 GALQW 115
Cdd:MTH00055 113 GGLEW 117
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 32-115 4.16e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 66.11  E-value: 4.16e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144546  32 DREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIVLKSSNLM-IWTSATmfFIMILLGGLYHEWNQ 110
Cdd:MTH00030  40 DSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFsFWIVYT--FLIVLAIGLAYEWIK 117


                 ....*
gi 589144546 111 GALQW 115
Cdd:MTH00030 118 GGLEW 122
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
2-115 3.27e-08

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 48.20  E-value: 3.27e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144546   2 MMLSMSFMISFLVPMLVMLLATILSKKIINDrEKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIVL 81
Cdd:PRK07756  10 MIVLIFLLLGILLPVVALTLGRMLRPNKPSA-AKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAY 88

                         90       100       110
                 ....*....|....*....|....*....|....
gi 589144546  82 KSSNLMIWTSATMFFIMILLGGLYhEWNQGALQW 115
Cdd:PRK07756  89 DKLGLFALIEMLIFVVMLLVGLAY-AWKKKVLQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
8-115 3.83e-08

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 48.12  E-value: 3.83e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144546   8 FMISFLVPMLVMLLATILSKKIIN---DREKSSPFECGFDP-KSSARMpfSLRFFLIAVIFLIFDIEIALILPIVIVLKs 83
Cdd:PRK08489  17 LVLTFVAFFLTTRLARFISRKLAQkntEKLKLAIYECGPEPvKQPNRI--SSHFYIMALLFILFDVEIVFMFPWAVDFK- 93

                         90       100       110
                 ....*....|....*....|....*....|...
gi 589144546  84 sNLMIWTSATMF-FIMILLGGLYHEWNQGALQW 115
Cdd:PRK08489  94 -LLGLFGLIEMLlFIVLLTIGFIYAWKKGALEW 125
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 19-115 2.02e-07

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 45.82  E-value: 2.02e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144546  19 MLLATILSKKIINdREKSSPFECGFDPKSSARMP--FSLRFFLIAVIFLIFDIEIALILPIVIVLKSSNLMIWTSATMFF 96
Cdd:PRK07928  22 VVVASLVGPKRYN-RAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYPWAVSFDALGVFGLVEMALFM 100

                         90
                 ....*....|....*....
gi 589144546  97 IMILLGGLYhEWNQGALQW 115
Cdd:PRK07928 101 LTVFVAYAY-VWRRGGLEW 118
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-115 2.77e-07

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 45.27  E-value: 2.77e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144546   1 MMMLSMSFMISFLVPMLVMLLATILSKKIiNDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIV 80
Cdd:MTH00092   1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKK-FDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVS 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 589144546  81 LKSSNLMIWtsatmFFIMILLGGLYHEWNQGALQW 115
Cdd:MTH00092  80 DFSSLISFF-----MLMIFIFFGFYMEWWYGKLIW 109
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 26-115 6.22e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 36.41  E-value: 6.22e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144546  26 SKKIINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIVLKSSNLMIWtsaTMFFIMILLGGLY 105
Cdd:MTH00060  28 NKIYSGGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMPFQGLLFYNFWY---YYFFLLLLFLGFV 104

                         90
                 ....*....|
gi 589144546 106 HEWNQGALQW 115
Cdd:MTH00060 105 VELFSGYVRW 114
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 32-115 1.59e-03

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 35.94  E-value: 1.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144546  32 DREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIVLKSSNLMIWTSATMFFIMILLgGLYHEWNQG 111
Cdd:PRK06432  60 DQSYLEPYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPFIETLIFLAMPLF-AVYYAFKMG 138


                 ....
gi 589144546 112 ALQW 115
Cdd:PRK06432 139 YMRW 142
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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