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Conserved domains on  [gi|589144548|ref|YP_009003915|]
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NADH dehydrogenase subunit 4 (mitochondrion) [Humphaplotropis culaishanensis (nomen nudum)]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475934)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-444 1.23e-165

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 473.49  E-value: 1.23e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548   1 MLKYLIMLVFMTPLCLIGNFWWLVHSLMFMSSFFFMLGVYSYSDLNMISLCFGIDYFSFGLILLSFWVCSLMITASGSIY 80
Cdd:MTH00163   1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  81 LSSYHSSVFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFS 160
Cdd:MTH00163  81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 161 VYDCSHTLYFPLLMDFGSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISF 240
Cdd:MTH00163 161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 241 LGLKFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNI 320
Cdd:MTH00163 241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 321 IYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMFLSFFSAVYTLYMYS 400
Cdd:MTH00163 321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....
gi 589144548 401 YSQHGSYYAGVYTCSLGYIREYHLLLLHWFPLNVLCLKGEYFFF 444
Cdd:MTH00163 401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-444 1.23e-165

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 473.49  E-value: 1.23e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548   1 MLKYLIMLVFMTPLCLIGNFWWLVHSLMFMSSFFFMLGVYSYSDLNMISLCFGIDYFSFGLILLSFWVCSLMITASGSIY 80
Cdd:MTH00163   1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  81 LSSYHSSVFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFS 160
Cdd:MTH00163  81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 161 VYDCSHTLYFPLLMDFGSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISF 240
Cdd:MTH00163 161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 241 LGLKFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNI 320
Cdd:MTH00163 241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 321 IYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMFLSFFSAVYTLYMYS 400
Cdd:MTH00163 321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....
gi 589144548 401 YSQHGSYYAGVYTCSLGYIREYHLLLLHWFPLNVLCLKGEYFFF 444
Cdd:MTH00163 401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 113-388 3.43e-50

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 172.11  E-value: 3.43e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  113 YIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFSVYDCSHTLYFPLL------MDFGSFYFLFYLF 186
Cdd:pfam00361   8 YLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgGLNSSGLLLLFLL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  187 IILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLKFNYFWLALGLSGGVVVSFICFR 266
Cdd:pfam00361  88 ILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALV 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  267 QVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLS-NIIYERLGSRSLLINKGMINLMPSMAL 345
Cdd:pfam00361 168 QTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILAL 247

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 589144548  346 WWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMFLS 388
Cdd:pfam00361 248 VFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 48-358 2.26e-49

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 174.88  E-value: 2.26e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  48 ISLCFGIDYFSFGLILLSFWVCSLMITASGSIylSSYHSSVFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLVPTLLLI 127
Cdd:COG1008   74 ISYHLGVDGISLPLVLLTALLTPLAILASWNE--IKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLI 151

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 128 LGWGYqPERLQAGIYLIFYTLVASLPLLLVLFSVYDCSHTLYFPLL------MDFGSFYFLFYLFIIlAFLIKMPMFLVH 201
Cdd:COG1008  152 GIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAelaaapLPLTAQLLLFLAFFI-AFAVKVPMFPFH 229

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 202 LWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMkiisfLGL------KFNYFWLALGLSGGVVVSFICFRQVDLKSLIA 275
Cdd:COG1008  230 TWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFA-----LPLfpeasaYFAPLLAALGVIGIIYGALVALAQTDLKRLIA 304

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 276 YSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNM 355
Cdd:COG1008  305 YSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASL 384


                 ...
gi 589144548 356 AAP 358
Cdd:COG1008  385 GLP 387
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 53-399 9.45e-43

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 157.02  E-value: 9.45e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548   53 GIDYFSFGLILLSFWVCSLMITASGsiYLSSYHSSVFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGy 132
Cdd:TIGR01972  74 GVDGISLLLVLLTALLTLLAILASW--ESIQKRVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWG- 150

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  133 QPERLQAGIYLIFYTLVASLPLLL-VLFSVYDCSHTLYFPLLMD----FGSFYFLFYLFIIlAFLIKMPMFLVHLWLPKA 207
Cdd:TIGR01972 151 GPNRIYAAMKFFLYTLAGSLLMLLaILGLYFLGGGTFDLLELLNlplpFGVQTWLFLAFFI-AFAVKVPLFPLHTWLPDA 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  208 HVEAPISGSMILAGVLLKLGGYGIFRV-MKIISFLGLKFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVI 286
Cdd:TIGR01972 230 HVEAPTAGSVILAGVLLKMGTYGFLRFnLPLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  287 GGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPpslnLLGE 366
Cdd:TIGR01972 310 LGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLP----GTSG 385

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 589144548  367 LGLLNSIISWSSLSFLTLMFLS----FFSAVYTLYMY 399
Cdd:TIGR01972 386 FVGEFLILLGSFKVNPVVAFLAalgiVLAAAYMLTLY 422
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-444 1.23e-165

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 473.49  E-value: 1.23e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548   1 MLKYLIMLVFMTPLCLIGNFWWLVHSLMFMSSFFFMLGVYSYSDLNMISLCFGIDYFSFGLILLSFWVCSLMITASGSIY 80
Cdd:MTH00163   1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  81 LSSYHSSVFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFS 160
Cdd:MTH00163  81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 161 VYDCSHTLYFPLLMDFGSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISF 240
Cdd:MTH00163 161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 241 LGLKFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNI 320
Cdd:MTH00163 241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 321 IYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMFLSFFSAVYTLYMYS 400
Cdd:MTH00163 321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....
gi 589144548 401 YSQHGSYYAGVYTCSLGYIREYHLLLLHWFPLNVLCLKGEYFFF 444
Cdd:MTH00163 401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 26-443 1.01e-115

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 345.29  E-value: 1.01e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  26 SLMFMSSFFFMLGVYSYsdlnmislCFGIDYFSFGLILLSFWVCSLMITASGSIYLSSYHSSVFVFMVLFLMIMLYCSFS 105
Cdd:MTH00150   2 SLLLLYSSFSSYESLSE--------LFSVDSMSSLLISLSLWISGLMMLASQKSVKLRNKSSSFSLLVLLLCLILVLAFS 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 106 SLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVL---FSVYDCSHTLYFPLLMDFGSFYFL 182
Cdd:MTH00150  74 VSSLLMFYFFFEASLIPTLLLILGWGYQPERLQAGMYMMLYTVGASLPLLLVIlwmSSSYGSSFMLLISSLRKLLSSMGL 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 183 FYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLKFNYFWLALGLSGGVVVSF 262
Cdd:MTH00150 154 WGLLVFLAFLVKLPMYPFHLWLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSL 233

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 263 ICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPS 342
Cdd:MTH00150 234 ICLRQSDVKSLIAYSSVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPS 313

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 343 MALWWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMFLSFFSAVYTLYMYSYSQHGSYYAGVYTCSLGYIREY 422
Cdd:MTH00150 314 LSLWWFLFCIINMAAPPSLNLLSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEM 393

                        410       420
                 ....*....|....*....|.
gi 589144548 423 HLLLLHWFPLNVLCLKGEYFF 443
Cdd:MTH00150 394 LLLLLHWVPLLLLILKSDLLF 414
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 1-440 6.93e-113

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 339.41  E-value: 6.93e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548   1 MLKYLIMLVFMTPLCLIGNFWWLVHS---LMFMSSFFFMLGVYSYSDLNMISLCFGIDYFSFGLILLSFWVCSLMITASG 77
Cdd:MTH00014   1 MLKLIMPLISLLLLPLIKYPWSWALTfstLLLLSLFTLLNLYPMSAPYSMFTESLSSDMLSAPLITLTLWITALMILASF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  78 SIYLSSYHSSVFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLV 157
Cdd:MTH00014  81 KIFQNNKAPKTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPLLMS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 158 LFSVYDCSHTLYFPLL-MDFGSFYF--LFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV 234
Cdd:MTH00014 161 ILLIFYTNNSLSMLMSsMEPPSIYLmnLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGGYGLLRM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 235 MKIISFLGLKFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGL 314
Cdd:MTH00014 241 SSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHGLCSSAL 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 315 FCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMFLSFFSAVY 394
Cdd:MTH00014 321 FALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAITSFLAAAY 400

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*.
gi 589144548 395 TLYMYSYSQHGSYYAGVYTCSLGYIREYHLLLLHWFPLNVLCLKGE 440
Cdd:MTH00014 401 SLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPD 446
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 1-444 1.42e-111

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 335.80  E-value: 1.42e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548   1 MLKYLIMLVFMTPLCLIGNFWWLVHSLMFMSSFFFMLGVYS-YSDLNMISLCFGIDYFSFGLILLSFWVCSLMITASGSI 79
Cdd:MTH00205   1 MSIFGVFSLLIILFVLKFKDWSFFSNLLLIGLFFSSFFFSNsFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  80 YLSSYHSSVFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLF 159
Cdd:MTH00205  81 FKSNKNSKLFTVSVIMLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGLF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 160 SVYDCSHTLYFPLLMDFGSFYFLFYLFII---LAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMK 236
Cdd:MTH00205 161 FLNSLNFSLSMFFNFPLNFSDFYLFLYWIflmLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 237 IISFLGLKFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFC 316
Cdd:MTH00205 241 MLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFA 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 317 LSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMFLSFFSAVYTL 396
Cdd:MTH00205 321 LANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYSL 400

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*...
gi 589144548 397 YMYSYSQHGSYYAGVYTCSLGYIREYHLLLLHWFPLNVLCLKGEYFFF 444
Cdd:MTH00205 401 YLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIFIC 448
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-440 1.77e-104

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 317.91  E-value: 1.77e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548   1 MLKYLIMLVFMTPLCLI--GNFWWL---VHSLMfMSSFFFMLGVYSYSDLNMISLCFGIDYFSFGLILLSFWVCSLMITA 75
Cdd:MTH00124   1 MLKIILPTIMLIPTTLLskPKFLWTnttTYSLL-IALLSLQWLKPPYYPTKNLTQWLGIDQISAPLLVLSCWLLPLMILA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  76 SGS--IYLSSYHSSVFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLVASLP 153
Cdd:MTH00124  80 SQNhlQHEPLQRKRTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLP 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 154 LLLVLFSVYDCSHTLYFPLLMDFGSF------YFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00124 160 LLIAILYLHNQTGTLSLPMLQLTHPTltnswtNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLG 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 228 GYGIFRVMKIISFLGLKFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGH 307
Cdd:MTH00124 240 GYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAH 319

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 308 GLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMFL 387
Cdd:MTH00124 320 GLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLA 399

                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|...
gi 589144548 388 SFFSAVYTLYMYSYSQHGSYYAGVYTCSLGYIREYHLLLLHWFPLNVLCLKGE 440
Cdd:MTH00124 400 TLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPE 452
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 1-444 1.31e-101

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 310.69  E-value: 1.31e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548   1 MLKYLI---MLVFMTPLCLIGNFWWLV--HSL--MFMSSFFFMLgvySYSDLNMISLCFGIDYFSFGLILLSFWVCSLMI 73
Cdd:MTH00068   1 MLKIIIptlMLLPTTWLSPKKWLWTLTttNSLiiAFLSLMWFNL---PSETMNFTNKYFGIDQISSPLLILTCWLLPLMI 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  74 TASGSiYLSS---YHSSVFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLVA 150
Cdd:MTH00068  78 LASQN-HLKNepiNRQRTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAG 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 151 SLPLLLVLFSVYDCSHTLYFPLLMDFGSFYF------LFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLL 224
Cdd:MTH00068 157 SLPLLIALLILQNSLGSLSLILLELMSPMQLmtytnkIWWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLL 236

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 225 KLGGYGIFRVMKIISFLGLKFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLM 304
Cdd:MTH00068 237 KLGGYGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILM 316

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 305 IGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTL 384
Cdd:MTH00068 317 ISHGLTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILIT 396

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 385 MFLSFFSAVYTLYMYSYSQHGSYYAGVYTCSLGYIREYHLLLLHWFPLNVLCLKGEYFFF 444
Cdd:MTH00068 397 GLGTLITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELISG 456
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 1-432 3.36e-99

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 304.21  E-value: 3.36e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548   1 MLKYLIMLVFMTPLCLIGNFWWLVHSLMFMSSFFFMLGVY-----SYSDLNMISLCFGIDYFSFGLILLSFWVCSLMITA 75
Cdd:MTH00044   1 MITLILLSLGIAITSWIVPKNKLWPISISQSSLISLLSLFllnnhWSSSWHNLSLSLATDSLSSPLIILSCWLAPLSLLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  76 SGSI--YLSSYHSSVFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLVASLP 153
Cdd:MTH00044  81 SINHlsNNSPNNQRTFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLP 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 154 LLLVLFSVYDCSHTLYFPL------LMDFGSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00044 161 LLISLIAIYSSSSSLSIPLselnwlTSLSSNSSSIWWIFCILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLG 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 228 GYGIFRVMKIISFLGLKF-NYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIG 306
Cdd:MTH00044 241 GYGLIRLINLFSLPSANNiSFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIA 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 307 HGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMF 386
Cdd:MTH00044 321 HGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGL 400

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*.
gi 589144548 387 LSFFSAVYTLYMYSYSQHGSYYAGVYTCSLGYIREYHLLLLHWFPL 432
Cdd:MTH00044 401 ATVFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPL 446
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 5-438 4.16e-95

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 293.38  E-value: 4.16e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548   5 LIMLVFMTPLCLIGNFWWLVHSLMFMSSFFFMLGVYSYSDLNMIS--LCFGIDYFSFGLILLSFWVCSLMITASGSIYLS 82
Cdd:MTH00206   6 LIMLLLMTILSKKKWLWRSTTFFSFLIALLFLLWFKWSSEVGWSFsnLYLSYDPLSSPLVILSCWLLPLMFLASQNHMKN 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  83 SYHS--SVFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFS 160
Cdd:MTH00206  86 EPINrqRIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLLIALLF 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 161 VYDCSHTLYFPLLMDFGSFYF---LFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKI 237
Cdd:MTH00206 166 LQNSLGSLSLYILYFSKLTTWnnnLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGYGMMRIILI 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 238 ISFLGLKFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCL 317
Cdd:MTH00206 246 LGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSSALFCL 325

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 318 SNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMFLSFFSAVYTLY 397
Cdd:MTH00206 326 ANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFLFTAIYSLY 405

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|.
gi 589144548 398 MYSYSQHGSYYAGVYTCSLGYIREYHLLLLHWFPLNVLCLK 438
Cdd:MTH00206 406 MFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLILN 446
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 1-437 6.23e-94

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 290.64  E-value: 6.23e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548   1 MLKYLIMLVFMTPLCLIGNFWWL-----VHSLMFMSSFFFMLGVYSYSDLNMiSLCFGIDYFSFGLILLSFWVCSLMITA 75
Cdd:MTH00110   1 MLKIIIPTIMLIPLTWLSKNNMIwinttTYSLLISLISLLLLNQPNDNSLNF-SLLFFSDSLSTPLLILTTWLLPLMLMA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  76 SGSIYL--SSYHSSVFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLVASLP 153
Cdd:MTH00110  80 SQHHLSkePLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLP 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 154 LLLVLFSVYDCSHTLYFPLL------MDFGSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00110 160 LLVALLYIQNNLGSLNFLLLqlwaqpLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLG 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 228 GYGIFRVMKIISFLGLKFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGH 307
Cdd:MTH00110 240 GYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAH 319

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 308 GLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMFL 387
Cdd:MTH00110 320 GLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLN 399

                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|
gi 589144548 388 SFFSAVYTLYMYSYSQHGSYYAGVYTCSLGYIREYHLLLLHWFPLNVLCL 437
Cdd:MTH00110 400 MLITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSL 449
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 1-440 2.72e-82

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 260.66  E-value: 2.72e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548   1 MLKYLIMLVFMTPLCLIGNFWWL-----VHSLMFMSSFFFMLGVYSYSDLNMISLCFGIDYFSFGLILLSFWVCSLMITA 75
Cdd:MTH00127   1 MLKILIPTLMLIPTTWLTPAKWLwtttlAHSLLIALASLTWLKNLSETGWSSLNLYMATDPLSTPLLVLTCWLLPLMILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  76 SGSIYLSSYHSSVFVFMVLF--LMIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLVASLP 153
Cdd:MTH00127  81 SQNHTAPEPINRQRMYITLLtsLQIFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 154 LLLVLFSVYDCSHTL------YFPLLMDFGSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00127 161 LLVALLLLQNSTGTLsmltlqYSQPLQLSSWADKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLG 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 228 GYGIFRVMKIISFLGLKFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGH 307
Cdd:MTH00127 241 GYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAH 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 308 GLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMFL 387
Cdd:MTH00127 321 GLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLG 400

                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|...
gi 589144548 388 SFFSAVYTLYMYSYSQHGSYYAGVYTCSLGYIREYHLLLLHWFPLNVLCLKGE 440
Cdd:MTH00127 401 TLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPE 453
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 113-388 3.43e-50

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 172.11  E-value: 3.43e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  113 YIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFSVYDCSHTLYFPLL------MDFGSFYFLFYLF 186
Cdd:pfam00361   8 YLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgGLNSSGLLLLFLL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  187 IILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLKFNYFWLALGLSGGVVVSFICFR 266
Cdd:pfam00361  88 ILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALV 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  267 QVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLS-NIIYERLGSRSLLINKGMINLMPSMAL 345
Cdd:pfam00361 168 QTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILAL 247

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 589144548  346 WWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMFLS 388
Cdd:pfam00361 248 VFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 48-358 2.26e-49

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 174.88  E-value: 2.26e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  48 ISLCFGIDYFSFGLILLSFWVCSLMITASGSIylSSYHSSVFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLVPTLLLI 127
Cdd:COG1008   74 ISYHLGVDGISLPLVLLTALLTPLAILASWNE--IKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLI 151

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 128 LGWGYqPERLQAGIYLIFYTLVASLPLLLVLFSVYDCSHTLYFPLL------MDFGSFYFLFYLFIIlAFLIKMPMFLVH 201
Cdd:COG1008  152 GIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAelaaapLPLTAQLLLFLAFFI-AFAVKVPMFPFH 229

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 202 LWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMkiisfLGL------KFNYFWLALGLSGGVVVSFICFRQVDLKSLIA 275
Cdd:COG1008  230 TWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFA-----LPLfpeasaYFAPLLAALGVIGIIYGALVALAQTDLKRLIA 304

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 276 YSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNM 355
Cdd:COG1008  305 YSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASL 384


                 ...
gi 589144548 356 AAP 358
Cdd:COG1008  385 GLP 387
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 50-397 8.98e-47

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 168.56  E-value: 8.98e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  50 LCFGIDYFSFGLILLSFWV--CSLMITASGSIYLSSYhssvFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLVPTLLLI 127
Cdd:MTH00226  96 LVFAVDGISIYFIILTGFIvpCSILISWHSVKYLTKS----FLICMLILEFLLYAVFSVLDIFMFYILFEGVLIPMYLIL 171

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 128 LGWGYQPERLQAGIYLIFYTLVASLPLLLVLFSVYDCSHTLYFPLLMDF-----GSFYFLFYLFIILAFLIKMPMFLVHL 202
Cdd:MTH00226 172 GIWGSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDYLTLASCshvvsEQTQKWIFLGIFLAMAVKIPIFPFHI 251

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 203 WLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLK-FNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAH 281
Cdd:MTH00226 252 WLPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLGAQnLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAH 331

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 282 MSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSL 361
Cdd:MTH00226 332 MGLVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSG 411

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 589144548 362 NLLGELGLLNSIISWSSLSFLTLMFLSFFSAVYTLY 397
Cdd:MTH00226 412 NFIGEYLSILSSFNWNPIIGVFVCSGVILSAVYSFY 447
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 89-399 2.78e-45

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 164.08  E-value: 2.78e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  89 FVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFSVYDCSHTL 168
Cdd:MTH00204 114 FLLCLLFLEVLLIGVFSVLDLLLFYILFEGILIPMFLLIGIWGSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTT 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 169 -YFPLLMDFGSFYFLFYLFI--ILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKIISFLGLK 244
Cdd:MTH00204 194 dYQILLNIKLPLSIQKWLLVgfFLSLAVKIPQIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFsWPLFPAASEY 273

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 245 FNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYER 324
Cdd:MTH00204 274 FAPLIVMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYER 353

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 589144548 325 LGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMFLSFFSAVYTLYMY 399
Cdd:MTH00204 354 HHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYLY 428
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 113-344 7.09e-44

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 160.37  E-value: 7.09e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 113 YIFFEASLVPTLLLILGWGYqPERLQAGIYLIFYTLVASLPLLLVLFSVY----DCSHTLYFPLLM----DFGSFYFLFY 184
Cdd:PRK05846 137 YVFFEAMLIPMYFLIGVWGG-KNRIYAATKFFLYTLLGSLLMLVAIIYLVvvyyNATGTFDIADLLnlplPPGVQYWLFL 215

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 185 LFIIlAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMkiisfLGL------KFNYFWLALGLSGGV 258
Cdd:PRK05846 216 AFFI-AFAVKMPMFPLHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFS-----LPLfpdashEFAPIIITLGVIAII 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 259 VVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMIN 338
Cdd:PRK05846 290 YGALVALAQTDIKKLIAYSSISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAK 369


                 ....*.
gi 589144548 339 LMPSMA 344
Cdd:PRK05846 370 VMPVLA 375
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 89-399 1.11e-43

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 159.45  E-value: 1.11e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  89 FVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFSVYDCSHTL 168
Cdd:MTH00217 111 FLLCLLVIEILLMGVFTILDLVGFYILFEGILIPMFLIIGIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTT 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 169 YFPLL----MDFGSFYFLFYLFIiLAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKIISFLGL 243
Cdd:MTH00217 191 DYQALcclkIEKELQYFIFLGFF-LSLAIKIPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFsWPLLPEASE 269

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 244 KFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYE 323
Cdd:MTH00217 270 YFSPLIQTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYE 349

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 589144548 324 RLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMFLSFFSAVYTLYMY 399
Cdd:MTH00217 350 RHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCNFVGEFLSLLAAFEYSYIVGVLASLGMVLSAGYSIYLY 425
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 53-399 9.45e-43

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 157.02  E-value: 9.45e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548   53 GIDYFSFGLILLSFWVCSLMITASGsiYLSSYHSSVFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGy 132
Cdd:TIGR01972  74 GVDGISLLLVLLTALLTLLAILASW--ESIQKRVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWG- 150

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  133 QPERLQAGIYLIFYTLVASLPLLL-VLFSVYDCSHTLYFPLLMD----FGSFYFLFYLFIIlAFLIKMPMFLVHLWLPKA 207
Cdd:TIGR01972 151 GPNRIYAAMKFFLYTLAGSLLMLLaILGLYFLGGGTFDLLELLNlplpFGVQTWLFLAFFI-AFAVKVPLFPLHTWLPDA 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  208 HVEAPISGSMILAGVLLKLGGYGIFRV-MKIISFLGLKFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVI 286
Cdd:TIGR01972 230 HVEAPTAGSVILAGVLLKMGTYGFLRFnLPLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  287 GGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPpslnLLGE 366
Cdd:TIGR01972 310 LGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLP----GTSG 385

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 589144548  367 LGLLNSIISWSSLSFLTLMFLS----FFSAVYTLYMY 399
Cdd:TIGR01972 386 FVGEFLILLGSFKVNPVVAFLAalgiVLAAAYMLTLY 422
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 26-418 2.15e-38

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 143.51  E-value: 2.15e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  26 SLMFMSSFFFMLGVYSYSDLNMISLCFGIDYFSFGLILLSFWVCSLMITASGSIYLSSYHSSVFVFMVLFLMIMLYcsfs 105
Cdd:MTH00094   8 SPFLFFLFLMFFSFLMFNNYSWSGLFFFFDSFVFVLLIFMMVFILGLVLLSEKNFNLLILSNLLILICLLFFVSSN---- 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 106 slsLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFSVYDCSHTLYFPLLMDFGSFYFLfyl 185
Cdd:MTH00094  84 ---MLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYLKNFFFFSLCYFDFFLSWEMFFIL--- 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 186 fiILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLglkFNYFWLALGLSGGVVVSFICF 265
Cdd:MTH00094 158 --SLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRILGSLNFV---YNNFWIIFSLLGMILSSFCCV 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 266 RQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMAL 345
Cdd:MTH00094 233 FQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMFFGL 312

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 589144548 346 WWFLLSSSNMAAPPSLNLLGELGLLNSIISWSSLSFLTLMFLSFFSAVYTLYMYSYSQHGSYYAGVYTCSLGY 418
Cdd:MTH00094 313 IFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFSNFNNFNVGL 385
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 53-341 3.60e-32

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 127.84  E-value: 3.60e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  53 GIDYFSFGLILLSFWVCSLMITASGSIylsSYHSSVFvfmvLFLMIMLYCSFSSLS----LLSFYIFFEASLVPTLLLIL 128
Cdd:PRK12561  56 GVDGLSMPLVLLSGLITTLSIFASWKV---TRKPRLF----YFLMLVLYSAQIGVFlaqdLLLFFLMWELELVPVYLLIS 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 129 GWGYQpERLQAGIYLIFYTLVASLPLLLVLFSVYDCSHTLYFPL----LMDF-GSFYFLFYLFIILAFLIKMPMFLVHLW 203
Cdd:PRK12561 129 IWGGQ-KRLYAATKFILYTALASIFILVAGLALALSGDTFTFDLaelgAKSYpLALELLLYAGFLIAFGVKLPIFPLHTW 207

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 204 LPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKIISFLGLKFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHM 282
Cdd:PRK12561 208 LPDAHGEASAPVSMILAGVLLKMGGYALIRFnVQMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHM 287

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 589144548 283 SMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMP 341
Cdd:PRK12561 288 GFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMP 346
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 52-359 1.21e-27

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 114.09  E-value: 1.21e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  52 FGIDYFSFGLILLSFWVCSLMITASGSIYLSSYHSSVFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWG 131
Cdd:COG0651   72 LVADRLSALFLLLTALVALAVLLYSIGYMRHERRGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGG 151

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 132 YqPERLQAGIYLIFYTLVASLPLLLVLFSVYDCSHTLYFPLL------MDFGSFYFLFyLFIILAFLIKMPMFLVHLWLP 205
Cdd:COG0651  152 T-KEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaarlaeLDPGLLLAAF-ALLLVGFGIKAALFPLHFWLP 229

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 206 KAHVEAPISGSMILAGVLLKLGGYGIFRVMKII--SFLGLKFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMS 283
Cdd:COG0651  230 DAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLfgADPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIG 309

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 589144548 284 MVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPP 359
Cdd:COG0651  310 YILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPP 385
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 53-358 2.38e-25

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 108.26  E-value: 2.38e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  53 GIDYFSFGLILLSFWVCSLMITASGSIylsSYHSSVFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGY 132
Cdd:PRK02546  84 GADGLSMPLILLTGFITTLAVLAAWPV---TFKPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGG 160

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 133 QpERLQAGIYLIFYTLVASLPLLLVLFSVYDCSHTLYFPL----LMDFG-SFYFLFYLFIILAFLIKMPMFLVHLWLPKA 207
Cdd:PRK02546 161 K-KRQYAATKFILYTAGSSLFILLAALAMAFYGDTPTFDMtalaAKDFGlGFQLLCYAGLLIAYGVKLPIVPLHTWLPDA 239

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 208 HVEAPISGSMILAGVLLKLGGYGIFRV-MKIISFLGLKFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVI 286
Cdd:PRK02546 240 HGEATAPVHMLLAGILLKMGGYALLRMnAGMLPDAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVL 319

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 589144548 287 GGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAP 358
Cdd:PRK02546 320 IGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALP 391
ndhD CHL00011
NADH dehydrogenase subunit 4
 52-393 4.95e-24

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 104.26  E-value: 4.95e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  52 FGIDYFSFGLILLSFWVCSLMITASGSIYLSSYhssvfvfMVLFLMIMLYC----SFSSLSLLSFYIFFEASLVPTLLLI 127
Cdd:CHL00011  80 LGIDGLSIGPILLTGFITTLATLAAWPVTRNSR-------LFYFLMLAMYSgqigLFSSRDLLLFFIMWELELIPVYLLL 152

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 128 LGWGYQpERLQAGIYLIFYTLVASLPLLLVLFSV--YDCSH-TLYFPLLMDFG---SFYFLFYLFIILAFLIKMPMFLVH 201
Cdd:CHL00011 153 SMWGGK-KRLYSATKFILYTAGGSIFLLIGVLGMglYGSNEpTLNFETLANQSypvALEILFYIGFLIAYAVKLPIIPLH 231

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 202 LWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKIISFLGLKFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVA 280
Cdd:CHL00011 232 TWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRInMELLPHAHSIFSPWLVIVGAIQIIYAASTSLGQRNLKKRIAYSSVS 311

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 281 HMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPS 360
Cdd:CHL00011 312 HMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTMFSSFSMASLALPGM 391

                        330       340       350
                 ....*....|....*....|....*....|...
gi 589144548 361 LNLLGELGLLNSIISWSSLSFLTLMFLSFFSAV 393
Cdd:CHL00011 392 SGFVAELIVFFGIITSQKYLLMPKILITFVMAI 424
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
53-338 1.05e-21

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 97.46  E-value: 1.05e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  53 GIDYFSFGLILLSFWVCSLMITASGSiylSSYHSSVFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGY 132
Cdd:PRK06473  76 GVDGLSLPLLVLNSLLTLIAIYSSDE---SIQRPRFYYSLLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLIAIWGG 152

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 133 QpERLQAGIYLIFYTLVASLPLL---LVLFSVYDCSHTLYFPLLMDF--GSFYFLFYLFIILAFLIKMPMFLVHLWLPKA 207
Cdd:PRK06473 153 Q-RRGYAATKFLLYTAISGILILvsfLGLVWLSGASSFDYEPLRSHTlpLSTQLLLLAPILVGFGIKIPLVPFHTWLPDA 231

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 208 HVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLKFNYFWLALGLSGGVVVSFIC-FRQVDLKSLIAYSSVAHMSMVI 286
Cdd:PRK06473 232 HVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLATWAVVSVLYGASCaIAQKDMKKMVAYSSIGHMGYIL 311

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 589144548 287 GGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMIN 338
Cdd:PRK06473 312 LAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLLN 363
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
48-357 3.11e-17

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 83.61  E-value: 3.11e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  48 ISLCFGIDYFSFGLILLSfwvCSLMITASGSIYLSSYHSSVFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLVPTLLLI 127
Cdd:PRK07363  71 LSYSLGVDGLSLPLLVLN---SLLTWIAIYSIGENTERPRLYYSLILLINGGIAGALLAQNLLLFFLFYELELIPFYLLI 147

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 128 LGWGYQpERLQAGIYLIFYTLVASLPLLLVLFSV----------YDCSHTLYFPLLMDFgsfyfLFYLFIILAFLIKMPM 197
Cdd:PRK07363 148 AIWGGE-KRGYASIKFLIYTAVSGLLVLAAFLGIvwlsgstsfdYDAISTQNLSLNTQL-----ILLTGLLLGFGIKIPL 221

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 198 FLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRvmkiisfLGLK-FNYFWL----ALGLSGGVVV---SFICFRQVD 269
Cdd:PRK07363 222 VPLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLR-------FGLQlFPQTWSlvapGLAIIGTISViygALSAIAQKD 294

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 270 LKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFL 349
Cdd:PRK07363 295 IKRMVAYSSIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMNPIRGLPLTSAL 374


                 ....*...
gi 589144548 350 LSSSNMAA 357
Cdd:PRK07363 375 LVLAGMAS 382
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 47-359 4.49e-17

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 83.00  E-value: 4.49e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  47 MISLCFGIDYFSFGLILLSFWVCSLMITASgsIYLSSYHSSVFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLVPTLLL 126
Cdd:PRK08375  68 GIGIELRADSLSALFLLVTSILAIAALLYA--IGYGEHRQTRFYALFLLLLAGLLGALLTADLFNLFVFLEIMSLSSYAL 145

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 127 IlGWGYQPERLQAGIYLIFYTLVASLPLLLVLFSVYDCSHTLYFPLLMD---FGSFYFLFYLFIILAFLIKMPMFLVHLW 203
Cdd:PRK08375 146 V-AMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGalaENPTVVTAFGFVLLALALKAAVFPLHTW 224

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 204 LPKAHVEAPISGSMILAGVLLKLGGYGIFRVM----KIISFLGLKFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSV 279
Cdd:PRK08375 225 LPRAYPAAPPVVTALLSGLVTKVAVYALIRIYftvfGGDFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTV 304

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 280 AHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPP 359
Cdd:PRK08375 305 SQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPP 384
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
 16-343 3.77e-16

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 79.97  E-value: 3.77e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  16 LIGNFWWLVHSLMFMSSFFFMLGVYSYSDLNMISLCFGIDYFSFGLILLSfwvcsLMITASGSIYLSSYHSSVFVFMVLF 95
Cdd:MTH00062   5 SVGFFLGFLLLLLFCLLYSSGVGCCILVVNNVFNGLFIFDSLSFYLILLV-----LFLGLYSQVMFYNLLSGVSRFFLFL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  96 LMIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFSVYDCSHTLYFPLLMD 175
Cdd:MTH00062  80 SLIFSILCFCVNNSLLFWFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFNFSDWGS 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 176 FGSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLkfnYFWLALGLS 255
Cdd:MTH00062 160 DDSVSLIVYYVLSFMFITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCGFIFSGSF---LGYLFLCCL 236

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 256 GGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKG 335
Cdd:MTH00062 237 FSVFFLITACSELDGKRWLAFLSLSHILVPVLGLFVGDWSSINLSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWVLLKS 316


                 ....*...
gi 589144548 336 MINLMPSM 343
Cdd:MTH00062 317 GINGSLVL 324
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 165-359 7.26e-16

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 79.63  E-value: 7.26e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 165 SHTLYFPLLMDFGSFYFL----FYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISF 240
Cdd:PRK12667 203 IRGLSFPLTGGLAGNPPLalgvALALALWAFTIKAAIFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFLYTIFG 282

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 241 LGLKFNYFWLA-------LGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSG 313
Cdd:PRK12667 283 ISPSLIDFRAAlspiliiLGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSL 362

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 589144548 314 LFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPP 359
Cdd:PRK12667 363 LFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPP 408
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 186-352 6.74e-15

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 76.51  E-value: 6.74e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 186 FIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIIS-FLGLKF-NYFWLALGLSGGVVVSFI 263
Cdd:PRK06458 219 FLLIGFGTKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILIDaAIGSDFpGRLLLIFGLLSVLVAAFF 298

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 264 CFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSM 343
Cdd:PRK06458 299 LLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLT 378


                 ....*....
gi 589144548 344 AlWWFLLSS 352
Cdd:PRK06458 379 G-WGLMLGA 386
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 16-341 3.14e-14

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 74.65  E-value: 3.14e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  16 LIGNFWWLVHSLMFMSSFFFMLGVYSYSDLNMISLCFGIDYFSFGLILLSFWVCSLMitASGSIYLSSYHSSVFVFMVLF 95
Cdd:PRK08668  29 VIGNALPLLFLIKLYFTLKVGTGEKLTLFFGGFKLTFTLTHLSWFFAMISLLVIFSV--AFFMVSEKTKNDAYFNMFALM 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  96 LMIMLYCSFSSLSLLSFYIFFEASLVPTLLLILgWGYQPERLQAGIYLIFyTLVASLPLLLVLFSVYDCSHTLYFPLLMD 175
Cdd:PRK08668 107 SLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVP-MGKKESRKASLKYFVL-SAIGAYAMLYAIFLIYAKTGTFDFADISQ 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 176 F------GSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGL------ 243
Cdd:PRK08668 185 GlindtsTGFALIVFLFLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFLLVLYVLPGTKLfsefgt 264

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 244 -----KFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLS 318
Cdd:PRK08668 265 yrgvpLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFFLIF 344

                        330       340
                 ....*....|....*....|...
gi 589144548 319 NIIYERLGSRSLLINKGMINLMP 341
Cdd:PRK08668 345 AAVIYRTGTTKISEMGGLIEKMP 367
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 113-324 8.63e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 69.98  E-value: 8.63e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 113 YIFFEASLVPTLLLIlGWGYQPERLQAGIYLIFYTLVASLPLLLVLFSVYDCSHTLYFPLLMDFGSFYFLFylfIILAFL 192
Cdd:PRK07234 120 YVALEVLSIATFLLV-AYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATADPEAFAL---IALGLL 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 193 IKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLKFNYFWLALGLSGgvvvSFICFRQVDLKS 272
Cdd:PRK07234 196 VKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLDLIVRIFGVGTALLG----VLFALLEKDLKR 271

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 589144548 273 LIAYSSVAHMSMVIGGlmtmnwwGCMGSLcLMIGHGLCSSGLFCLSNIIYER 324
Cdd:PRK07234 272 MLAFSTISQLGFILAA-------PLVGGL-YALAHGLVKSTLFLCAGALPSR 315
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 91-359 1.03e-11

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 67.06  E-value: 1.03e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  91 FMVLFLMIMLYCSFSSLSLLSFyIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFSVYDCSHTLYF 170
Cdd:PRK08667 116 LTALFILSMLGVVASANTFSFL-FFWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFEL 194

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 171 PLLMDFGSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLKFNYFWL 250
Cdd:PRK08667 195 SPLGASAGILSLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRFLMDVLSPELWWGVLIL 274

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 251 ALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMG--SLCLM---------IGHGLCSSGLFCLSN 319
Cdd:PRK08667 275 LAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLYVIFGVYGldTLALLalggalfhsLNHALFKSLLFLTAG 354

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 589144548 320 IIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPP 359
Cdd:PRK08667 355 SVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPP 394
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 178-327 1.92e-11

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 65.55  E-value: 1.92e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 178 SFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKII--SFLGLKFNYFWLALGLS 255
Cdd:PRK08676 203 SVLGASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLrqSGAAEQFSNVLIGLGIF 282

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 589144548 256 GGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGS 327
Cdd:PRK08676 283 SIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHRQYRS 354
Oxidored_q5_N pfam01059
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
1-102 6.22e-11

NADH-ubiquinone oxidoreductase chain 4, amino terminus;


Pssm-ID: 366442 [Multi-domain]  Cd Length: 110  Bit Score: 59.08  E-value: 6.22e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548    1 MLKYLIMLVFMTPLCLIGNFWWL-----VHSLMFMSSFFFMLGVYSYSDLNMISLCFGIDYFSFGLILLSFWVCSLMITA 75
Cdd:pfam01059   1 MLKILLPTLMLIPLTFLSKPKWLwttstLYSLLLALLSLLLLNNPSNFSWSNLSYFLGIDSLSYPLIILSCWLLPLMILA 80

                          90       100
                  ....*....|....*....|....*....
gi 589144548   76 SGSIYLSS--YHSSVFVFMVLFLMIMLYC 102
Cdd:pfam01059  81 SQKHLKSEpnNRQRTFIFLLILLQLFLIL 109
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 185-395 2.33e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 62.44  E-value: 2.33e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 185 LFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKII-----SFLGLKFNYFWLALGLSGGVV 259
Cdd:PRK12662 213 LFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDVfkanfVFTTLPFNNVFMILAALAIVF 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 260 VSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINL 339
Cdd:PRK12662 293 GSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTTKLEDCLNLWKS 372

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 589144548 340 MPSMALWWFLLSSSNMAAPPSLNLLGELGLLNSII-SWSSLSFLTLMFLSFFSAVYT 395
Cdd:PRK12662 373 MPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIkSNAWIGLVVLLVGSGLSVIYV 429
PRK12646 PRK12646
DUF4040 family protein;
80-359 2.66e-09

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 59.38  E-value: 2.66e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  80 YLSSYHSSV---FVFMVLFLMIMLyCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLL 156
Cdd:PRK12646 101 YLSSRKDNLprfYFYLTLFMFSMI-GIVLSDNTILMYVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLV 179

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 157 VLFSVYDCSHTLYFPLLM-------DFGSFYFLFYLFIILAFlIKMPMFLVHLWLPKAhVEAPISGSMIL-AGVLLKLGG 228
Cdd:PRK12646 180 GFIMLYIMTGTNNITEILgqadhikNHGLFIPMIFMFLLGAF-TKSAQFPFHIWLPRA-MAAPTPVSAYLhSATMVKAGI 257

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 229 YGIFRVMKIISfLGLKFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAH----MSMV-IGGLMTMNWWGCMGSLCL 303
Cdd:PRK12646 258 FLLFRFTPLLG-LSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQlgmiMAMVgIGGGYAQHQQDAIASIYV 336

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 589144548 304 MI---------GHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALwWFLLSSSNMAAPP 359
Cdd:PRK12646 337 FVlfaalfhlmNHAIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNL-VMTIAALSMAGVP 400
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 113-349 5.95e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 58.06  E-value: 5.95e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 113 YIFFEASLVPTLLLiLGWGYQPERLQAGIYLIFYTLVASLPLLLVLFSVYDCSHTLYFPLL------MDFGSFYFLFYLF 186
Cdd:PRK12665 137 YVGFEILLVASYVL-LTLGATAARVRAGVTYVMVSMVSSLLFLIGIALVYAATGTLNMADLavrldeLPSGTRTALFAVL 215

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 187 IIlAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIIsFLGLKFNYFWLALGLSGGVVVSFICFR 266
Cdd:PRK12665 216 LV-AFGIKAAVFPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRTHTLL-FPGGGLDTLLMVVALLTMVVGILGAIA 293

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 267 QVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALW 346
Cdd:PRK12665 294 QSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLFLVVGLIERQAGSSSLRRLGGLAKASPLLAVL 373


                 ...
gi 589144548 347 WFL 349
Cdd:PRK12665 374 FFV 376
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 187-359 6.67e-08

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 54.77  E-value: 6.67e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 187 IILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLKFNYFWL--ALGLSGGVVVSFIC 264
Cdd:PRK08377 212 LIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMQNANGWSSVLKLviIMATLTVFFAELSA 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 265 FRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMA 344
Cdd:PRK08377 292 LRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTA 371

                        170
                 ....*....|....*
gi 589144548 345 LWWFLLSSSNMAAPP 359
Cdd:PRK08377 372 LALTIGALSTVGIPL 386
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 188-359 6.99e-07

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 51.43  E-value: 6.99e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 188 ILAFL---IKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVmkIISFLG---LKFNYFWLALGLSG---GV 258
Cdd:PRK06521 214 LLALFgfgAKAGLVPLHVWLPRAHPAAPSHVSALMSGVMLKVAIYGILRV--VFDLLGapgWWWGVLVLALGAISavlGV 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 259 VVSFIcfrQVDLKSLIAYSSVAHM---SMVIG--------GLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGS 327
Cdd:PRK06521 292 LYALA---EHDLKRLLAYSTIENIgiiFVGLGlamvfiayGMPLLAALALTAALYHLLNHALFKSLLFLGAGAVLHATGT 368

                        170       180       190
                 ....*....|....*....|....*....|..
gi 589144548 328 RSLLINKGMINLMPSMAlWWFLLSSSNMAAPP 359
Cdd:PRK06521 369 RDMEKLGGLIRRMPWTA-WAFLIGCLAISALP 399
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 113-341 1.62e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 50.10  E-value: 1.62e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 113 YIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLL---VLFSVYDCSHTLYFPLLMDFGSFYF--LFYLFI 187
Cdd:PRK08376 147 FVFLEIMSIASYALVAFRNDTWEAIEAGIKYMFVGSLASSMVLLgiaLLYGQYGTLNMAYLAVKMSENPTVVakIALALF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 188 ILAFLIKMPMFLVHLWLPKAHVEAPISGSMILagVLLKLGG-YGIFRVMkiisflglkFNYFWLALGLS--GGVVVSFIC 264
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAAPSSISAML--LVIKQAGlYALARVL---------FSIYGPAINLAtvGWVIIILGC 295

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 265 FR----------QVDLKSLIAYSSVAH---------MSMVIGGLMTMNWWGCM---GSLCLMIGHGLCSSGLFCLSNIIY 322
Cdd:PRK08376 296 LTmfvgvamavvQKDVKRLLAYHSVSQigymllglgVGLAALGDPAMASYGEIalaGGIYHIVNHALYKALLFLTAGAVI 375

                        250
                 ....*....|....*....
gi 589144548 323 ERLGSRSLLINKGMINLMP 341
Cdd:PRK08376 376 YETGTRNLNELGGLARTMP 394
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 61-359 2.70e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 49.43  E-value: 2.70e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  61 LILLSF-WVCSLMITASGSIYLSSYHSSVFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLVPTLLLIlGWGYQPERLQA 139
Cdd:PRK06589  89 LLLIGFlWICALLYTPKYLAINNIDSSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLI-GHTRNNISLSG 167

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 140 GI-YLIFYTLVASLPLLLVLFSVYDCSHTLYFPLLMDFGSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMI 218
Cdd:PRK06589 168 GYkYLKILMISALLLFLPAVILIYTKTGNLDFVSGGLFSKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALL 247

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 219 LAGVLLKLGGYGIFRV------MKIISFLGLKFNYFWLALGLSgGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTM 292
Cdd:PRK06589 248 HAVIVVKTGLFCIYKIllyifgLSYLQRIFAEFNWLIFIPIVS-IFYSSLKALKTDNIKKILAYSTISQLSLALLSAFIL 326

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 589144548 293 NWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPP 359
Cdd:PRK06589 327 TPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPI 393
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 114-359 7.97e-04

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 41.50  E-value: 7.97e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 114 IFFEASLVPTLLLIlGWGYQPERLQAGIYLIFYTLVASLPLLLVLFSVYDCSHTLYFPLLMDF-GSFYFLFYLFIILAFL 192
Cdd:PRK06525 140 LFFEITGLCSWALI-SYYQSPKALRSALKALLITHIGSLGLYLAAATLFLQTGTFALSALSGLhGSLKYLVFLGILFAAW 218

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 193 IKMPMFLVHLWLPKAhVEAPISGSMIL-AGVLLKLGGYGIFRVMKIISFLGLKFNYFWLALGLSGGVVVSFICFRQVDLK 271
Cdd:PRK06525 219 GKSAQLPFYSWLPDA-MEAPTPASAYLhAASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTLLYGFLMYLPQQDMK 297

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 272 SLIAYSSVAHMSMVIGGLMTM---NWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWF 348
Cdd:PRK06525 298 RLLAYSTITQLGYMFFGLSLAilgSRLALEGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLKKLPLVGVGFC 377

                        250
                 ....*....|.
gi 589144548 349 LLSSSNMAAPP 359
Cdd:PRK06525 378 VAALAITGVPP 388
PRK12650 PRK12650
DUF4040 family protein;
188-359 1.56e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 41.18  E-value: 1.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 188 ILAFLI------KMPMFLVHLWLPKAHVEA-PIS-----GSMILAGVLLKLGGYGIFRVMKIisflglkFNYFWLALGLS 255
Cdd:PRK12650 209 VVAVLIavaaftKSAQFPFHFWLPEAMAAItPVSaflhaAAVVKAGIYLLLRFSPVFHDVAV-------WNWLLIIVGMI 281

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 256 GGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKG 335
Cdd:PRK12650 282 TALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGS 361

                        170       180
                 ....*....|....*....|....
gi 589144548 336 MINLMPsMALWWFLLSSSNMAAPP 359
Cdd:PRK12650 362 LWRRMP-FTFVSVTIAALSMAAVP 384
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 52-359 1.72e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 40.67  E-value: 1.72e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  52 FGIDyFSFGLILLSFwVCSLMITASGS---IYLSSY------HSSVFVFMVLFLMIMLyCSFSSLSLLSFYIFFEASLVP 122
Cdd:PRK12647  54 LGVN-LSFLLDGLSL-TFALLITGIGTlivLYAGGYlkghpdLGRFYSYILLFMASML-GLVLSDNLITLFVFWELTSIT 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 123 TLLLIlgwGYQPER-------LQAgiylIFYTLVASLPLLLVLFSVYDCSHTLYFPLLMDFG------SFYFLFYLFIIL 189
Cdd:PRK12647 131 SFLLI---GFNHEReaarraaLQA----LLVTGGGGLALLAGLILLGNVTGTYSLSELLASGdvirehPLYLAILLLVLG 203

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 190 AFLIKMPMFLVHLWLPKAhVEAPI-------SGSMILAGVLLklggygifrVMKIISFLGLKFNYFWLaLGLSGG---VV 259
Cdd:PRK12647 204 GAFTKSAQFPFHFWLPNA-MEAPTpvsaylhSATMVKAGIYL---------LARLNPVLGGTPLWQTI-LPLFGGltmLT 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 260 VSFICFRQVDLKSLIAYSSVahmsMVIGGLMTMNWWGC----MGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKG 335
Cdd:PRK12647 273 GALLAVRQTDLKLILAYSTV----SALGTLVMLLGLGSelaiKAAVLFLVAHSLYKGALFMVAGIIDHETGTRDITKLGG 348

                        330       340
                 ....*....|....*....|....
gi 589144548 336 MINLMPSMALWWFLLSSSNMAAPP 359
Cdd:PRK12647 349 LRRAMPITAAAALLAALSMAGLPP 372
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 52-359 2.71e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 39.93  E-value: 2.71e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548  52 FGI----DYFSFGLILLSFWVCSLMITASGSIYLSSYHSSVFVFMVLFLMIMLYCSFSSLSLLSFYIFFEASLVPTLLLI 127
Cdd:PRK07691  69 FGIvfvaDMFAALLVLTSSIITFLVILYSFQTIGIERERYYYYPSVLFMLAGVNGAFLTGDIFNLFVFFEVMLMASYVLI 148

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 128 LGWGYQPErLQAGIYLIFYTLVASLPLLLVLFSVYDCSHTLYFPLLM---------DFGSFYFLFYLFIILaFLIKMPMF 198
Cdd:PRK07691 149 VIGGTKIQ-LRESIKYVLINVVSSAFFVVAVAILYSVVGTLNMADISvkiaelsagQTGLITVVAILFLFV-FATKAGLF 226

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 199 LVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLKFNYfwLALGLSGGVVVSFICF---RQVDLKSLIA 275
Cdd:PRK07691 227 PLYFWLPGSYYAPPIAIAALFGALLTKVGVYAIARTFTLFFSHDTSFTH--YLILILALLTIIFGVIgavAYFDIKKIII 304

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 276 YSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMAlWWFLLSSSNM 355
Cdd:PRK07691 305 YNIMIAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAALFLLIGIMIKITGTTDLKKMGGLIKRYPVLG-WMFFIAALSL 383


                 ....
gi 589144548 356 AAPP 359
Cdd:PRK07691 384 AGIP 387
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 200-359 2.89e-03

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 39.81  E-value: 2.89e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 200 VHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFrvmkIISFLGLKFNYFWLALGLSGGVVVSFI----CFRQVDLKSLIA 275
Cdd:PRK08042 199 LHGWVPQAHANASAPAAALFSTVVMKIGLLGIL----TLSLLGGNAPLWWGVALLVLGMITAFVgglyALMEHNIQRLLA 274

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 276 YSSVAHMSMVIGGL-----------MTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMA 344
Cdd:PRK08042 275 YHTLENIGIILLGLgagvtgialeqPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVIS 354

                        170
                 ....*....|....*
gi 589144548 345 LwWFLLSSSNMAAPP 359
Cdd:PRK08042 355 I-AMLVGLMAMAALP 368
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 113-292 3.75e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 39.81  E-value: 3.75e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 113 YIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYT------LVASLPLLLVLFSVYDCSHTLYFPLLMDFGSFYFLFYLF 186
Cdd:PRK12649 137 FIFWELTSITSFMLIGYWRHRPESVYGATKSLLITaggglfMFAGFLLLHVITGTYDIATILQDSELIENIKGHPLFLIT 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 187 IILAFL---IKMPMFLVHLWLPKAhVEAPISGSMIL-AGVLLKLGGYGIFRVMKIISFlglkfNYFWLAL----GLSGGV 258
Cdd:PRK12649 217 LILIFIgaaAKSAQGPFYIWLPNA-MEAPTPVSAFLhSATMVKAGVYLVARIHPIFSG-----TEAWFILvsgtGMITMV 290

                        170       180       190
                 ....*....|....*....|....*....|....
gi 589144548 259 VVSFICFRQVDLKSLIAYSSVAHMSMviggLMTM 292
Cdd:PRK12649 291 LAGFLAFRQTDIKAILAYSTISQLAY----LMTM 320
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
113-359 5.07e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 39.16  E-value: 5.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 113 YIFFEASLVPTLLLILgWGYQPERLQAGIYLIFYTLVASLPLLLVLFSVYDCSHTLYFPLL------MDFGSFYFLFYLF 186
Cdd:PRK12663 134 YVWFEVMLIASFVLIT-LGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIamrlndMGDTATLTTIALL 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 187 IILAFLIKMPMFLVHlWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVM--------KIISFLGLKFNYFWLALGLSGGV 258
Cdd:PRK12663 213 FLLAFGMKAALFPFM-WLPAAYHTPNTEVAALFAALLTKVGIYALIRVFtllfpqerELLHPLLATMAAITMVIGALGAL 291

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144548 259 VvsficfrQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMIN 338
Cdd:PRK12663 292 A-------YKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALFLIAGSLVRLTGYRSLQYLGGLYR 364

                        250       260
                 ....*....|....*....|.
gi 589144548 339 LMPSMALWWFLLSSSNMAAPP 359
Cdd:PRK12663 365 KEPLFGALFLILIFAIGGLPP 385
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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