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Conserved domains on  [gi|927372347|ref|YP_009164634|]
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NADH dehydrogenase subunit 4L (mitochondrion) [Amazona ochrocephala]

Protein Classification

ND4L family protein( domain architecture ID 10009575)

ND4L family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
 1-98 3.61e-42

NADH dehydrogenase subunit 4L; Provisional


:

Pssm-ID: 177184  Cd Length: 98  Bit Score: 133.05  E-value: 3.61e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372347  1 MPLLHLSFYSAFTLSSLGLAFHRAHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPVFMLAFSACEAGTGLAMLVA 80
Cdd:MTH00125  1 MTPTHFSLYTAFMLSLLGLSFHRTHLMSALLCLESMMLSLFIMLSLWPITTQTPSFTPMPIILLTFSACEAGTGLALLVA 80

                        90
                ....*....|....*...
gi 927372347 81 STRTHGSDNLQNLNLLQC 98
Cdd:MTH00125 81 TTRTHGSDHLKNLNLLQC 98
 
Name Accession Description Interval E-value
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
 1-98 3.61e-42

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177184  Cd Length: 98  Bit Score: 133.05  E-value: 3.61e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372347  1 MPLLHLSFYSAFTLSSLGLAFHRAHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPVFMLAFSACEAGTGLAMLVA 80
Cdd:MTH00125  1 MTPTHFSLYTAFMLSLLGLSFHRTHLMSALLCLESMMLSLFIMLSLWPITTQTPSFTPMPIILLTFSACEAGTGLALLVA 80

                        90
                ....*....|....*...
gi 927372347 81 STRTHGSDNLQNLNLLQC 98
Cdd:MTH00125 81 TTRTHGSDHLKNLNLLQC 98
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
11-98 4.94e-13

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 59.11  E-value: 4.94e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372347  11 AFTLSSLGLAFHRaHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPVFMLAFSACEAGTGLAMLVASTRTHGSDNL 90
Cdd:pfam00420  9 LFLIGLYGLLLRR-NLLRVLLSLELMLNAVNLALVLFGRLTADPLPQALILTAIVIAAAEAAVGLALLVRIYRTHGTDDV 87


                 ....*...
gi 927372347  91 QNLNLLQC 98
Cdd:pfam00420 88 DSLNLLKG 95
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 1-96 1.20e-04

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 37.74  E-value: 1.20e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372347  1 MPLLHLSFYSAFtLSSLGL--AFHRAHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPVFMLAFSACEAGTGLAML 78
Cdd:COG0713   1 IPLEHYLILAAI-LFAIGLygVLTRRNLIVVLMSIELMLNAVNLNLVAFSRYLGDLDGQVFALFVIAVAAAEVAVGLAII 79

                        90
                ....*....|....*...
gi 927372347 79 VASTRTHGSDNLQNLNLL 96
Cdd:COG0713  80 VALYRNRGTIDVDDLNEL 97
 
Name Accession Description Interval E-value
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
 1-98 3.61e-42

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177184  Cd Length: 98  Bit Score: 133.05  E-value: 3.61e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372347  1 MPLLHLSFYSAFTLSSLGLAFHRAHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPVFMLAFSACEAGTGLAMLVA 80
Cdd:MTH00125  1 MTPTHFSLYTAFMLSLLGLSFHRTHLMSALLCLESMMLSLFIMLSLWPITTQTPSFTPMPIILLTFSACEAGTGLALLVA 80

                        90
                ....*....|....*...
gi 927372347 81 STRTHGSDNLQNLNLLQC 98
Cdd:MTH00125 81 TTRTHGSDHLKNLNLLQC 98
ND4L MTH00067
NADH dehydrogenase subunit 4L; Provisional
 1-98 5.07e-38

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177139  Cd Length: 98  Bit Score: 122.79  E-value: 5.07e-38
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372347  1 MPLLHLSFYSAFTLSSLGLAFHRAHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPVFMLAFSACEAGTGLAMLVA 80
Cdd:MTH00067  1 MSPTYFTFYSAFLLGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWSTQFESLSYFSLPMFMLTFSACEASTGLALMVA 80

                        90
                ....*....|....*...
gi 927372347 81 STRTHGSDNLQNLNLLQC 98
Cdd:MTH00067 81 TTRTHGTDHLKNLNLLQC 98
ND4L MTH00126
NADH dehydrogenase subunit 4L; Provisional
 1-98 1.10e-37

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177185  Cd Length: 98  Bit Score: 122.00  E-value: 1.10e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372347  1 MPLLHLSFYSAFTLSSLGLAFHRAHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPVFMLAFSACEAGTGLAMLVA 80
Cdd:MTH00126  1 MTPVHFSFSSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLESTSFSAAPMLLLAFSACEASAGLALLVA 80

                        90
                ....*....|....*...
gi 927372347 81 STRTHGSDNLQNLNLLQC 98
Cdd:MTH00126 81 TARTHGTDRLQNLNLLQC 98
ND4L MTH00107
NADH dehydrogenase subunit 4L; Provisional
 1-98 2.05e-23

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177169  Cd Length: 98  Bit Score: 85.75  E-value: 2.05e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372347  1 MPLLHLSFYSAFTLSSLGLAFHRAHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPVFMLAFSACEAGTGLAMLVA 80
Cdd:MTH00107  1 MSLIYMNIMLAFTISLLGLLMYRSHLMSSLLCLEGMMLSLFIMATLTILNTHFTLASMMPIILLVFAACEAAVGLALLVM 80

                        90
                ....*....|....*...
gi 927372347 81 STRTHGSDNLQNLNLLQC 98
Cdd:MTH00107 81 VSNTYGTDYVQNLNLLQC 98
ND4L MTH00181
NADH dehydrogenase subunit 4L; Provisional
 4-96 4.81e-20

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214450  Cd Length: 93  Bit Score: 76.91  E-value: 4.81e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372347  4 LHLSFYSAFTLSSLGLAFHRAHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPVFMLAFSACEAGTGLAMLVASTR 83
Cdd:MTH00181  1 MMFVFISAFILLLLGLSLYKTHLLSLLLCLEGMMLFLFLLLALFSLLSSSSSMLMFGLILLTFSACEAVLGLSLLVATNR 80

                        90
                ....*....|...
gi 927372347 84 THGSDNLQNLNLL 96
Cdd:MTH00181 81 THGSDHLLKFNLL 93
ND4L MTH00043
NADH dehydrogenase subunit 4L; Validated
 1-97 1.33e-16

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 214410  Cd Length: 98  Bit Score: 68.41  E-value: 1.33e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372347  1 MPLLHLSFYSAFTLSSLGLAFHRAHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPVFMLAFSACEAGTGLAMLVA 80
Cdd:MTH00043  1 MNIILIIILSSFFLGLLGILINRLHLLSILLCLELLLISLFLNISIWSLNYGNFSNLSFSLLLLTLSACEASIGLSLMVL 80

                        90
                ....*....|....*..
gi 927372347 81 STRTHGSDNLQNLNLLQ 97
Cdd:MTH00043 81 LSRNHNSDLVASLNLLQ 97
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
11-98 4.94e-13

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 59.11  E-value: 4.94e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372347  11 AFTLSSLGLAFHRaHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPVFMLAFSACEAGTGLAMLVASTRTHGSDNL 90
Cdd:pfam00420  9 LFLIGLYGLLLRR-NLLRVLLSLELMLNAVNLALVLFGRLTADPLPQALILTAIVIAAAEAAVGLALLVRIYRTHGTDDV 87


                 ....*...
gi 927372347  91 QNLNLLQC 98
Cdd:pfam00420 88 DSLNLLKG 95
ND4L MTH00188
NADH dehydrogenase subunit 4L; Provisional
 6-98 1.52e-09

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177237  Cd Length: 97  Bit Score: 50.36  E-value: 1.52e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372347  6 LSFYSAFTLSSLGLAFHRAHFISALLCLESMMLSMYIALSTWPVEnqTPSLALTPVFMLAFSACEAGTGLAMLVASTRTH 85
Cdd:MTH00188  7 LVILLFVVLGLFTFLLNRKHLLMLLLSLEAIMLSLFWFLLVGLSY--MEKELYLSLVLLTFAACEASVGLALLVSLIRSH 84

                        90
                ....*....|...
gi 927372347 86 GSDNLQNLNLLQC 98
Cdd:MTH00188 85 GSDYVSSLNLIKC 97
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
 12-92 1.52e-06

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177218  Cd Length: 89  Bit Score: 42.45  E-value: 1.52e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372347 12 FTLSSLGLAFHRAHFISALLCLESMMLSMYIALSTWPVENQTPSLALtpVFMLAFSACEAGTGLAMLVASTRTHGSDNLQ 91
Cdd:MTH00162 11 FFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFL--LFFLTFSVCEGALGLSILVSMIRSHGNDYFS 88


                .
gi 927372347 92 N 92
Cdd:MTH00162 89 S 89
ND4L MTH00180
NADH dehydrogenase subunit 4L; Provisional
 12-97 4.02e-06

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177231  Cd Length: 99  Bit Score: 41.56  E-value: 4.02e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372347 12 FTLSSLGLAFHRAHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPVFMLAFSACEAGTGLAMLVASTRTHGSDNLQ 91
Cdd:MTH00180 13 FILGVLGIVLNRSNLIIMLMSIELMLLAISLLFLINSVAIDNLIGQIFTIMILTVAAAESAIGLAILVAYYRIRGTIAVK 92


                ....*.
gi 927372347 92 NLNLLQ 97
Cdd:MTH00180 93 SLNLLR 98
ND4L MTH00149
NADH dehydrogenase subunit 4L; Provisional
 12-98 5.52e-06

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214434  Cd Length: 97  Bit Score: 40.98  E-value: 5.52e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372347 12 FTLSSLGLAFHRAHFISALLCLESMMLSMYIAL-STWPVENQTPSLALtpvFMLAFSACEAGTGLAMLVASTRTHGSDNL 90
Cdd:MTH00149 13 FLMGVFALLFQYKHLLSILLSLEALMLSLLVMMfSSSGLISFSSYLFL---IILTFGACEASLGLSLLVSLIRLHGNDYV 89


                ....*...
gi 927372347 91 QNLNLLQC 98
Cdd:MTH00149 90 SSLSSLKF 97
ND4L MTH00013
NADH dehydrogenase subunit 4L; Validated
 12-98 3.19e-05

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 133655  Cd Length: 97  Bit Score: 38.96  E-value: 3.19e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372347 12 FTLSSLGLAFHRAHFISALLCLESMMLSMYIaLSTWPVENQTPSLALTPVFMLAFSACEAGTGLAMLVASTRTHGSDNLQ 91
Cdd:MTH00013 12 PFISMFNLSLQRKHLLMSLLSLEAMILSLAL-FIPLSLMFANQVNGMLAIVLLTFGACEASLGLSLLVLMTRSYGNDMLK 90


                ....*..
gi 927372347 92 NLNLLQC 98
Cdd:MTH00013 91 SLTSNKC 97
ND4L MTH00001
NADH dehydrogenase subunit 4L; Provisional
 12-97 3.26e-05

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177099  Cd Length: 99  Bit Score: 39.28  E-value: 3.26e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372347 12 FTLSSLGLAFHRAHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPVFMLAFSACEAGTGLAMLVASTRTHGSDNLQ 91
Cdd:MTH00001 13 FLLGIWGIILNRGHFIIMLVSIELVLLSTFFLFLINSIEIDLLIEQIFTIMGLTIAAAESAIGLAIMVAYYRIRGTISLK 92


                ....*.
gi 927372347 92 NLNLLQ 97
Cdd:MTH00001 93 SLNSLR 98
PRK05715 PRK05715
NADH-quinone oxidoreductase subunit NuoK;
1-96 5.01e-05

NADH-quinone oxidoreductase subunit NuoK;


Pssm-ID: 180218  Cd Length: 100  Bit Score: 38.62  E-value: 5.01e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372347   1 MPLLHLSFYSA--FTLSSLGLaFHRAHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPVFMLAFSACEAGTGLAML 78
Cdd:PRK05715   2 IPLQHYLILAAilFCIGLVGL-LLRRNAIVVLMSIELMLNAVNLNFVAFSSYLGDLDGQVFAFFVITVAAAEAAIGLAIL 80

                         90
                 ....*....|....*...
gi 927372347  79 VASTRTHGSDNLQNLNLL 96
Cdd:PRK05715  81 LQLYRNRGTIDVDDLNEL 98
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 1-96 1.20e-04

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 37.74  E-value: 1.20e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372347  1 MPLLHLSFYSAFtLSSLGL--AFHRAHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPVFMLAFSACEAGTGLAML 78
Cdd:COG0713   1 IPLEHYLILAAI-LFAIGLygVLTRRNLIVVLMSIELMLNAVNLNLVAFSRYLGDLDGQVFALFVIAVAAAEVAVGLAII 79

                        90
                ....*....|....*...
gi 927372347 79 VASTRTHGSDNLQNLNLL 96
Cdd:COG0713  80 VALYRNRGTIDVDDLNEL 97
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 59-98 1.08e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 36.47  E-value: 1.08e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 927372347  59 TPVFMLAFSACEAGTGLAMLVASTRTHGSDNLQNLNLLQC 98
Cdd:MTH00127 393 TLALTGLGTLITAGYSLYMFLMTQRGPLPDHIIALNPSHT 432
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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