VP1 [Kobuvirus cattle/Kagoshima-2-24-KoV/2015/JPN]
capsid protein( domain architecture ID 46111)
picornavirus capsid protein is a component of the capsid (protein coat) which encloses the viral genome; it may play roles in the infection cycle
List of domain hits
Name | Accession | Description | Interval | E-value | |||
rhv_like super family | cl13999 | Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA ... |
92-231 | 2.31e-10 | |||
Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A virus, rhinovirus, foot-and-mouth disease virus and encephalomyocarditis virus; common structure is an 8-stranded beta sandwich The actual alignment was detected with superfamily member cd00205: Pssm-ID: 417456 Cd Length: 178 Bit Score: 58.18 E-value: 2.31e-10
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Name | Accession | Description | Interval | E-value | |||
rhv_like | cd00205 | Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA ... |
92-231 | 2.31e-10 | |||
Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A virus, rhinovirus, foot-and-mouth disease virus and encephalomyocarditis virus; common structure is an 8-stranded beta sandwich Pssm-ID: 119412 Cd Length: 178 Bit Score: 58.18 E-value: 2.31e-10
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Name | Accession | Description | Interval | E-value | |||
rhv_like | cd00205 | Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA ... |
92-231 | 2.31e-10 | |||
Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A virus, rhinovirus, foot-and-mouth disease virus and encephalomyocarditis virus; common structure is an 8-stranded beta sandwich Pssm-ID: 119412 Cd Length: 178 Bit Score: 58.18 E-value: 2.31e-10
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Blast search parameters | ||||
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