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Conserved domains on  [gi|944541642|ref|YP_009175510|]
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cytochrome b (mitochondrion) [Phyllomimus detersus]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 688.06  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  12 FKIVNNALIDLPTPSNISAWWNFGSLLGVCLMTQILTGLFLAMHYTAHIDLAFSSITHICRDVNYGWLMRTIHANGASIF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  92 FICLYLHVGRGLYYGSFNYHYTWMTGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGINLVQWVWGGFAV 171
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 172 DNATLTRFFTFHFILPFIVSAMVLIHLLFLHQTGSNNPLGTNSNIDKIPFHPYFSLKDIFGMMLMLTMLTLLTLIKPYLL 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 252 GDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMIMPLYNKNNFRSLQFYPINQILFWIMTS 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 944541642 332 IIIMLTWIGARPVEDPYILTGQMLTVMYFSYYLITP 367
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 688.06  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  12 FKIVNNALIDLPTPSNISAWWNFGSLLGVCLMTQILTGLFLAMHYTAHIDLAFSSITHICRDVNYGWLMRTIHANGASIF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  92 FICLYLHVGRGLYYGSFNYHYTWMTGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGINLVQWVWGGFAV 171
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 172 DNATLTRFFTFHFILPFIVSAMVLIHLLFLHQTGSNNPLGTNSNIDKIPFHPYFSLKDIFGMMLMLTMLTLLTLIKPYLL 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 252 GDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMIMPLYNKNNFRSLQFYPINQILFWIMTS 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 944541642 332 IIIMLTWIGARPVEDPYILTGQMLTVMYFSYYLITP 367
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
10-365 6.08e-121

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 355.25  E-value: 6.08e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  10 PIFKIVNNaLIDLPTPSNISAWWNFGSLLGVCLMTQILTGLFLAMHYTAHIDLAFSSITHICRDVNYGWLMRTIHANGAS 89
Cdd:COG1290   19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  90 IFFICLYLHVGRGLYYGSFNY--HYTWMTGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGINLVQWVWG 167
Cdd:COG1290   98 LFFAAVYLHMFRGFFYGAYKKprELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 168 GFAVDNATLTRFFTFH-FILPFIVSAMVLIHLLFLHQTGSNNPLG----TNSNIDKIPFHPYFSLKDIFGMMLMLTMLTL 242
Cdd:COG1290  178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 243 LTLIKPylLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALVLSIAILMIMPLYNKNNFRSLQFYP 320
Cdd:COG1290  258 LAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 944541642 321 INQILFWIMTSIIIMLTWIGARPveDPYILTGQMLTVMYFSYYLI 365
Cdd:COG1290  336 VRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 6.29e-90

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 269.24  E-value: 6.29e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  10 PIFKIVNNALIDLPTPSNISAWWNFGSLLGVCLMTQILTGLFLAMHYTAHIDLAFSSITHICRDVNYGWLMRTIHANGAS 89
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  90 IFFICLYLHVGRGLYYGSFN--YHYTWMTGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGINLVQWVWG 167
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 944541642 168 GFAVDNATLTRFFTFHFILPFIVSAMVLIHLLFLHQTGSN 207
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 5.35e-81

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 246.14  E-value: 5.35e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642   19 LIDLPTPSNISAWWNFGSLLGVCLMTQILTGLFLAMHYTAHIDLAFSSITHICRDVNYGWLMRTIHANGASIFFICLYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642   99 VGRGLYYGSFNYHY--TWMTGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGINLVQWVWGGFAVDNATL 176
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 944541642  177 TRFFTFHFILPFIVSAMVLIHLLFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 259-345 2.30e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 58.66  E-value: 2.30e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  259 PANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMIMP-LYNKNNFRSLQFYPINQILFWIMTSIIIMLT 337
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPfIENVNKFQNPFRRPVATTVFLFGTVVALWLG 144


                  ....*...
gi 944541642  338 WIGARPVE 345
Cdd:TIGR01156 145 IGATLPID 152
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 688.06  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  12 FKIVNNALIDLPTPSNISAWWNFGSLLGVCLMTQILTGLFLAMHYTAHIDLAFSSITHICRDVNYGWLMRTIHANGASIF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  92 FICLYLHVGRGLYYGSFNYHYTWMTGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGINLVQWVWGGFAV 171
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 172 DNATLTRFFTFHFILPFIVSAMVLIHLLFLHQTGSNNPLGTNSNIDKIPFHPYFSLKDIFGMMLMLTMLTLLTLIKPYLL 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 252 GDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMIMPLYNKNNFRSLQFYPINQILFWIMTS 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 944541642 332 IIIMLTWIGARPVEDPYILTGQMLTVMYFSYYLITP 367
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 619.61  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642   1 MTKPLRLTHPIFKIVNNALIDLPTPSNISAWWNFGSLLGVCLMTQILTGLFLAMHYTAHIDLAFSSITHICRDVNYGWLM 80
Cdd:MTH00145   1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  81 RTIHANGASIFFICLYLHVGRGLYYGSFNYHYTWMTGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGIN 160
Cdd:MTH00145  81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 161 LVQWVWGGFAVDNATLTRFFTFHFILPFIVSAMVLIHLLFLHQTGSNNPLGTNSNIDKIPFHPYFSLKDIFGMMLMLTML 240
Cdd:MTH00145 161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 241 TLLTLIKPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMIMPLYNKNNFRSLQFYP 320
Cdd:MTH00145 241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 944541642 321 INQILFWIMTSIIIMLTWIGARPVEDPYILTGQMLTVMYFSYYLITPIIHKWWDNLL 377
Cdd:MTH00145 321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNIL 377
CYTB MTH00119
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 614.60  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642   1 MTKPLRLTHPIFKIVNNALIDLPTPSNISAWWNFGSLLGVCLMTQILTGLFLAMHYTAHIDLAFSSITHICRDVNYGWLM 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  81 RTIHANGASIFFICLYLHVGRGLYYGSFNYHYTWMTGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGIN 160
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 161 LVQWVWGGFAVDNATLTRFFTFHFILPFIVSAMVLIHLLFLHQTGSNNPLGTNSNIDKIPFHPYFSLKDIFGMMLMLTML 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 241 TLLTLIKPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMIMPLYNKNNFRSLQFYP 320
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 944541642 321 INQILFWIMTSIIIMLTWIGARPVEDPYILTGQMLTVMYFSYYLI-TPIIHKWWDNLLN 378
Cdd:MTH00119 321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLIlFPLLGALENKMLN 379
CYTB MTH00016
cytochrome b; Validated
 1-377 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 603.98  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642   1 MTKPLRLTHPIFKIVNNALIDLPTPSNISAWWNFGSLLGVCLMTQILTGLFLAMHYTAHIDLAFSSITHICRDVNYGWLM 80
Cdd:MTH00016   1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  81 RTIHANGASIFFICLYLHVGRGLYYGSFNYHYTWMTGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGIN 160
Cdd:MTH00016  81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 161 LVQWVWGGFAVDNATLTRFFTFHFILPFIVSAMVLIHLLFLHQTGSNNPLGTNSNIDKIPFHPYFSLKDIFGMMLMLTML 240
Cdd:MTH00016 161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 241 TLLTLIKPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMIMPLYNKNNFRSLQFYP 320
Cdd:MTH00016 241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 944541642 321 INQILFWIMTSIIIMLTWIGARPVEDPYILTGQMLTVMYFSYYLITPIIHKWWDNLL 377
Cdd:MTH00016 321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLL 377
CYTB MTH00131
cytochrome b; Provisional
 5-375 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 602.80  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642   5 LRLTHPIFKIVNNALIDLPTPSNISAWWNFGSLLGVCLMTQILTGLFLAMHYTAHIDLAFSSITHICRDVNYGWLMRTIH 84
Cdd:MTH00131   4 LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  85 ANGASIFFICLYLHVGRGLYYGSFNYHYTWMTGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGINLVQW 164
Cdd:MTH00131  84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 165 VWGGFAVDNATLTRFFTFHFILPFIVSAMVLIHLLFLHQTGSNNPLGTNSNIDKIPFHPYFSLKDIFGMMLMLTMLTLLT 244
Cdd:MTH00131 164 IWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLA 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 245 LIKPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMIMPLYNKNNFRSLQFYPINQI 324
Cdd:MTH00131 244 LFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQF 323

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|.
gi 944541642 325 LFWIMTSIIIMLTWIGARPVEDPYILTGQMLTVMYFSYYLITPIIHKWWDN 375
Cdd:MTH00131 324 LFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLEN 374
CYTB MTH00100
cytochrome b; Provisional
 1-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 602.01  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642   1 MTkPLRLTHPIFKIVNNALIDLPTPSNISAWWNFGSLLGVCLMTQILTGLFLAMHYTAHIDLAFSSITHICRDVNYGWLM 80
Cdd:MTH00100   1 MT-NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWII 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  81 RTIHANGASIFFICLYLHVGRGLYYGSFNYHYTWMTGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGIN 160
Cdd:MTH00100  80 RYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 161 LVQWVWGGFAVDNATLTRFFTFHFILPFIVSAMVLIHLLFLHQTGSNNPLGTNSNIDKIPFHPYFSLKDIFGMMLMLTML 240
Cdd:MTH00100 160 LVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 241 TLLTLIKPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMIMPLYNKNNFRSLQFYP 320
Cdd:MTH00100 240 MLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRP 319

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 944541642 321 INQILFWIMTSIIIMLTWIGARPVEDPYILTGQMLTVMYFSYYLI 365
Cdd:MTH00100 320 LSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILI 364
CYTB MTH00074
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 601.29  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642   1 MTKPLRLTHPIFKIVNNALIDLPTPSNISAWWNFGSLLGVCLMTQILTGLFLAMHYTAHIDLAFSSITHICRDVNYGWLM 80
Cdd:MTH00074   1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  81 RTIHANGASIFFICLYLHVGRGLYYGSFNYHYTWMTGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGIN 160
Cdd:MTH00074  81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 161 LVQWVWGGFAVDNATLTRFFTFHFILPFIVSAMVLIHLLFLHQTGSNNPLGTNSNIDKIPFHPYFSLKDIFGMMLMLTML 240
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 241 TLLTLIKPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMIMPLYNKNNFRSLQFYP 320
Cdd:MTH00074 241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 944541642 321 INQILFWIMTSIIIMLTWIGARPVEDPYILTGQMLTVMYFSYYLITPIIHKWWDNLL 377
Cdd:MTH00074 321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKL 377
CYTB MTH00191
cytochrome b; Provisional
 5-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 594.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642   5 LRLTHPIFKIVNNALIDLPTPSNISAWWNFGSLLGVCLMTQILTGLFLAMHYTAHIDLAFSSITHICRDVNYGWLMRTIH 84
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  85 ANGASIFFICLYLHVGRGLYYGSFNYHYTWMTGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGINLVQW 164
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 165 VWGGFAVDNATLTRFFTFHFILPFIVSAMVLIHLLFLHQTGSNNPLGTNSNIDKIPFHPYFSLKDIFGMMLMLTMLTLLT 244
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 245 LIKPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMIMPLYNKNNFRSLQFYPINQI 324
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 944541642 325 LFWIMTSIIIMLTWIGARPVEDPYILTGQMLTVMYFSYYLI 365
Cdd:MTH00191 321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00034
cytochrome b; Validated
 2-365 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 557.40  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642   2 TKPLRLTHPIFKIVNNALIDLPTPSNISAWWNFGSLLGVCLMTQILTGLFLAMHYTAHIDLAFSSITHICRDVNYGWLMR 81
Cdd:MTH00034   1 TGPLRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  82 TIHANGASIFFICLYLHVGRGLYYGSFNYHYTWMTGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGINL 161
Cdd:MTH00034  81 NIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 162 VQWVWGGFAVDNATLTRFFTFHFILPFIVSAMVLIHLLFLHQTGSNNPLGTNSNIDKIPFHPYFSLKDIFGMMLMLTMLT 241
Cdd:MTH00034 161 VQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 242 LLTLIKPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMIMPLYNKNNFRSLQFYPI 321
Cdd:MTH00034 241 SLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPL 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 944541642 322 NQILFWIMTSIIIMLTWIGARPVEDPYILTGQMLTVMYFSYYLI 365
Cdd:MTH00034 321 SQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLF 364
CYTB MTH00224
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 520.63  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642   1 MTKPLRLTHPIFKIVNNALIDLPTPSNISAWWNFGSLLGVCLMTQILTGLFLAMHYTAHIDLAFSSITHICRDVNYGWLM 80
Cdd:MTH00224   1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  81 RTIHANGASIFFICLYLHVGRGLYYGSFNYHYTWMTGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGIN 160
Cdd:MTH00224  81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 161 LVQWVWGGFAVDNATLTRFFTFHFILPFIVSAMVLIHLLFLHQTGSNNPLGTNSNIDKIPFHPYFSLKDIFGMMLMLTML 240
Cdd:MTH00224 161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 241 TLLTLIKPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMIMPLYNKNNFRSLQFYP 320
Cdd:MTH00224 241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 944541642 321 INQILFWIMTSIIIMLTWIGARPVEDPYILTGQMLTVMYFSYYLITPIIHKWWDNLLN 378
Cdd:MTH00224 321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLLN 378
CYTB MTH00022
cytochrome b; Validated
 4-378 1.50e-175

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 493.45  E-value: 1.50e-175
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642   4 PLRLTHPIFKIVNNALIDLPTPSNISAWWNFGSLLGVCLMTQILTGLFLAMHYTAHIDLAFSSITHICRDVNYGWLMRTI 83
Cdd:MTH00022   2 PLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  84 HANGASIFFICLYLHVGRGLYYGSFNYHYTWMTGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGINLVQ 163
Cdd:MTH00022  82 HANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQ 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 164 WVWGGFAVDNATLTRFFTFHFILPFIVSAMVLIHLLFLHQTGSNNPLGTNSNIDKIPFHPYFSLKDIFGMMLMLTMLTLL 243
Cdd:MTH00022 162 WVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFI 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 244 TLIKPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMIMPLYNKNNFRSLQFYPINQ 323
Cdd:MTH00022 242 VYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGR 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 944541642 324 ILFWIMTSIIIMLTWIGARPVEDPYILTGQMLTVMYFSYYLI-TPIIHKWWDNLLN 378
Cdd:MTH00022 322 MAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVlIPLLGELENQLLF 377
CYTB MTH00053
cytochrome b; Provisional
 1-377 1.83e-175

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 493.45  E-value: 1.83e-175
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642   1 MTKPLRLTHPIFKIVNNALIDLPTPSNISAWWNFGSLLGVCLMTQILTGLFLAMHYTAHIDLAFSSITHICRDVNYGWLM 80
Cdd:MTH00053   1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  81 RTIHANGASIFFICLYLHVGRGLYYGSFNYHYTWMTGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGIN 160
Cdd:MTH00053  81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 161 LVQWVWGGFAVDNATLTRFFTFHFILPFIVSAMVLIHLLFLHQTGSNNPLGTNSNIDKIPFHPYFSLKDIFGMMLMLTML 240
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 241 TLLTLIKPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMIMPLYNKNNFRSLQFYP 320
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 944541642 321 INQILFWIMTSIIIMLTWIGARPVEDPYILTGQMLTVMYFSYYLITPIIHKWWDNLL 377
Cdd:MTH00053 321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKL 377
CYTB MTH00033
cytochrome b; Provisional
 17-377 2.23e-135

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 391.61  E-value: 2.23e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  17 NALIDLPTPSNISAWWNFGSLLGVCLMTQILTGLFLAMHYTAHIDLAFSSITHICRDVNYGWLMRTIHANGASIFFICLY 96
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  97 LHVGRGLYYGSFNYHYTWMTGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGINLVQWVWGGFAVDNATL 176
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 177 TRFFTFHFILPFIVSAMVLIHLLFLHQTGSNNPLGTNSNIDKIPFHPYFSLKDIFGmMLMLTMLTLLTLIKPY---LLGD 253
Cdd:MTH00033 173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILG-FLILFGVFVIIGIEPRietLLQD 251

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 254 PDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMIMPLYNKNNFRSLQFYPINQILFWIMTSII 333
Cdd:MTH00033 252 PENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDF 331

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 944541642 334 IMLTWIGARPV-EDPYILTGQMLTVMYFSYYLITPIIHKWWDNLL 377
Cdd:MTH00033 332 IILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSNLF 376
CYTB MTH00086
cytochrome b; Provisional
 13-365 2.64e-126

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 367.73  E-value: 2.64e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  13 KIVNNALIDLPTPSNISAWWNFGSLLGVCLMTQILTGLFLAMHYTAHIDLAFSSITHICRDVNYGWLMRTIHANGASIFF 92
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  93 ICLYLHVGRGLYYGSFNYHYTWMTGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGINLVQWVWGGFAVD 172
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 173 NATLTRFFTFHFILPFIVSAMVLIHLLFLHQTGSNNPLGTNSNIDKIPFHPYFSLKDIFGmMLMLTMLTLLTLIKPYLLG 252
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLG 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 253 DPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMIMPLYnkNNFRSLqFYPINQILFWIMTSI 332
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFV--NNYTSC-LNKLNKFLVFSFIVV 316

                        330       340       350
                 ....*....|....*....|....*....|...
gi 944541642 333 IIMLTWIGARPVEDPYILTGQMLTVMYFSYYLI 365
Cdd:MTH00086 317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
10-365 6.08e-121

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 355.25  E-value: 6.08e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  10 PIFKIVNNaLIDLPTPSNISAWWNFGSLLGVCLMTQILTGLFLAMHYTAHIDLAFSSITHICRDVNYGWLMRTIHANGAS 89
Cdd:COG1290   19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  90 IFFICLYLHVGRGLYYGSFNY--HYTWMTGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGINLVQWVWG 167
Cdd:COG1290   98 LFFAAVYLHMFRGFFYGAYKKprELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 168 GFAVDNATLTRFFTFH-FILPFIVSAMVLIHLLFLHQTGSNNPLG----TNSNIDKIPFHPYFSLKDIFGMMLMLTMLTL 242
Cdd:COG1290  178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 243 LTLIKPylLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALVLSIAILMIMPLYNKNNFRSLQFYP 320
Cdd:COG1290  258 LAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 944541642 321 INQILFWIMTSIIIMLTWIGARPveDPYILTGQMLTVMYFSYYLI 365
Cdd:COG1290  336 VRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 6.29e-90

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 269.24  E-value: 6.29e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  10 PIFKIVNNALIDLPTPSNISAWWNFGSLLGVCLMTQILTGLFLAMHYTAHIDLAFSSITHICRDVNYGWLMRTIHANGAS 89
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  90 IFFICLYLHVGRGLYYGSFN--YHYTWMTGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGINLVQWVWG 167
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 944541642 168 GFAVDNATLTRFFTFHFILPFIVSAMVLIHLLFLHQTGSN 207
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 13-358 6.25e-84

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 259.53  E-value: 6.25e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  13 KIVNNALIDLPTPSNISAWWNFGSLLGVCLMTQILTGLFLAMHYTAHIDLAFSSITHICRDVNYGWLMRTIHANGASIFF 92
Cdd:MTH00046   3 SLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  93 ICLYLHVGRGLYYGSFNYHYTWMTGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGINLVQWVWGGFAVD 172
Cdd:MTH00046  83 ILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVT 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 173 NATLTRFFTFHFILPFIVSAMVLIHLLFLHQTGSNNPLGTNSNI-DKIPFHPYFSLKDIFGMMLMLTMLTLLTLIKPYLL 251
Cdd:MTH00046 163 GVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLV 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 252 GDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIaLVLSIAILMIMPLYNKNNFRSLqfypINQILFWIMTS 331
Cdd:MTH00046 243 LDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLIVS 317

                        330       340
                 ....*....|....*....|....*..
gi 944541642 332 IIIMLTWIGARPVEDPYILTGQMLTVM 358
Cdd:MTH00046 318 LFFSLSYLGGCHPEYPYLLISQLFSVL 344
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 5.35e-81

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 246.14  E-value: 5.35e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642   19 LIDLPTPSNISAWWNFGSLLGVCLMTQILTGLFLAMHYTAHIDLAFSSITHICRDVNYGWLMRTIHANGASIFFICLYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642   99 VGRGLYYGSFNYHY--TWMTGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGINLVQWVWGGFAVDNATL 176
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 944541642  177 TRFFTFHFILPFIVSAMVLIHLLFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-354 5.21e-48

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 159.73  E-value: 5.21e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 208 NPLGTNSNIDKIPFHPYFSLKDIFGMMLMLTMLTLLTLIKPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPN 287
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 944541642 288 KLGGVIALVLSIAILMIMPLYNKNNFRSlQFYPINQILFWIMTSIIIMLTWIGARPVEDPYILTGQM 354
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-254 4.48e-45

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 152.78  E-value: 4.48e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642   89 SIFFICLYLHVGRGLYYGSFNY--HYTWMTGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGINLVQWVW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKprELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  167 GGFAVDNATLTRFFTFHF-ILPFIVSAMVLIHLLFLHQTGSNNPLGTNSNIDKIPFHPYFSLKDIFGMMLMLTMLTLLTL 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 944541642  246 IKPYLLGDP 254
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-359 1.11e-40

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 139.15  E-value: 1.11e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  259 PANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMIMPLYNKNNFRSLQFYPINQILFWIMTSIIIMLTW 338
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 944541642  339 IGARPVEDPYILTGQMLTVMY 359
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 34-210 1.80e-37

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 134.84  E-value: 1.80e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  34 FGSLLGVCLMTQILTGLFLAMHYTAHIDLAFSSITHICRDVNYGWLMRTIHANGASIFFICLYLHVGRGLYYGSFN--YH 111
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKkpRE 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 112 YTWMTGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGINLVQWVWGGFAVDNATLTRFFTFH-FILPFIV 190
Cdd:PRK03735 124 LNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170       180
                 ....*....|....*....|
gi 944541642 191 SAMVLIHLLFLHQTGSNNPL 210
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 25-210 6.66e-34

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 125.22  E-value: 6.66e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  25 PSNISAWWNFGSLLGVCLMTQILTGLFLAMHYTAHIDLAFSSITHICRDVNYGWLMRTIHANGASIFFICLYLHVGRGLY 104
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 105 YGSFN--YHYTWMTGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGINLVQWVWGGFAVDNATLTRFFTF 182
Cdd:CHL00070 107 TGGFKkpRELTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*....
gi 944541642 183 H-FILPFIVSAMVLIHLLFLHQTGSNNPL 210
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 248-341 2.00e-11

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 61.56  E-value: 2.00e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 248 PYLLGDPdnfipANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMIMP-LYNKNNFRSLQFYPINQILF 326
Cdd:CHL00058  59 PSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPfLENVNKFQNPFRRPVATTVF 133

                         90
                 ....*....|....*
gi 944541642 327 WIMTSIIIMLTwIGA 341
Cdd:CHL00058 134 LIGTAVALWLG-IGA 147
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 259-350 1.23e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 59.42  E-value: 1.23e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642 259 PANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMIMP-LYNKNNFRSLQFYPINQILFWIMTSIIIMLT 337
Cdd:COG5679   66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPfIENVNKFQNPFRRPVATAVFLFGTLVTLWLG 145

                         90
                 ....*....|...
gi 944541642 338 WIGARPVEDPYIL 350
Cdd:COG5679  146 IGAALPIDKSLTL 158
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 259-345 2.30e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 58.66  E-value: 2.30e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944541642  259 PANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMIMP-LYNKNNFRSLQFYPINQILFWIMTSIIIMLT 337
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPfIENVNKFQNPFRRPVATTVFLFGTVVALWLG 144


                  ....*...
gi 944541642  338 WIGARPVE 345
Cdd:TIGR01156 145 IGATLPID 152
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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