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Conserved domains on  [gi|971743042|ref|YP_009197511|]
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transcriptional regulator [Bacillus phage Pavlov]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MRP-L20 super family cl15109
Mitochondrial ribosomal protein subunit L20; This family is the essential mitochondrial ...
 102-141 3.63e-06

Mitochondrial ribosomal protein subunit L20; This family is the essential mitochondrial ribosomal protein subunit L20 of fungi.


The actual alignment was detected with superfamily member pfam12824:

Pssm-ID: 432810  Cd Length: 161  Bit Score: 44.25  E-value: 3.63e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 971743042  102 HLTDEDIRELRRLRNE--EKWKYQDIAEKYGITPTYASEVAR 141
Cdd:pfam12824  82 HLTPEDIEEIRRLRAEdpEKWTRKKLAKKFGCSPLFVSMVTE 123
 
Name Accession Description Interval E-value
MRP-L20 pfam12824
Mitochondrial ribosomal protein subunit L20; This family is the essential mitochondrial ...
 102-141 3.63e-06

Mitochondrial ribosomal protein subunit L20; This family is the essential mitochondrial ribosomal protein subunit L20 of fungi.


Pssm-ID: 432810  Cd Length: 161  Bit Score: 44.25  E-value: 3.63e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 971743042  102 HLTDEDIRELRRLRNE--EKWKYQDIAEKYGITPTYASEVAR 141
Cdd:pfam12824  82 HLTPEDIEEIRRLRAEdpEKWTRKKLAKKFGCSPLFVSMVTE 123
HTH_XRE smart00530
Helix-turn-helix XRE-family like proteins;
110-146 1.49e-03

Helix-turn-helix XRE-family like proteins;


Pssm-ID: 197775 [Multi-domain]  Cd Length: 56  Bit Score: 34.80  E-value: 1.49e-03
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 971743042   110 ELRRLRNEEKWKYQDIAEKYGITPTYASEVARGKRFP 146
Cdd:smart00530   1 RLKELREEKGLTQEELAEKLGVSRSTLSRIENGKRKP 37
HTH_XRE cd00093
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ...
 109-146 2.67e-03

Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.


Pssm-ID: 238045 [Multi-domain]  Cd Length: 58  Bit Score: 34.45  E-value: 2.67e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 971743042 109 RELRRLRNEEKWKYQDIAEKYGITPTYASEVARGKRFP 146
Cdd:cd00093    2 ERLKELRKEKGLTQEELAEKLGVSRSTISRIENGKRNP 39
 
Name Accession Description Interval E-value
MRP-L20 pfam12824
Mitochondrial ribosomal protein subunit L20; This family is the essential mitochondrial ...
 102-141 3.63e-06

Mitochondrial ribosomal protein subunit L20; This family is the essential mitochondrial ribosomal protein subunit L20 of fungi.


Pssm-ID: 432810  Cd Length: 161  Bit Score: 44.25  E-value: 3.63e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 971743042  102 HLTDEDIRELRRLRNE--EKWKYQDIAEKYGITPTYASEVAR 141
Cdd:pfam12824  82 HLTPEDIEEIRRLRAEdpEKWTRKKLAKKFGCSPLFVSMVTE 123
HTH_XRE smart00530
Helix-turn-helix XRE-family like proteins;
110-146 1.49e-03

Helix-turn-helix XRE-family like proteins;


Pssm-ID: 197775 [Multi-domain]  Cd Length: 56  Bit Score: 34.80  E-value: 1.49e-03
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 971743042   110 ELRRLRNEEKWKYQDIAEKYGITPTYASEVARGKRFP 146
Cdd:smart00530   1 RLKELREEKGLTQEELAEKLGVSRSTLSRIENGKRKP 37
HTH_XRE cd00093
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ...
 109-146 2.67e-03

Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.


Pssm-ID: 238045 [Multi-domain]  Cd Length: 58  Bit Score: 34.45  E-value: 2.67e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 971743042 109 RELRRLRNEEKWKYQDIAEKYGITPTYASEVARGKRFP 146
Cdd:cd00093    2 ERLKELRKEKGLTQEELAEKLGVSRSTISRIENGKRNP 39
HTH_3 pfam01381
Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and ...
 111-146 5.19e-03

Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within the protein Swiss:Q5F9C2, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteriztic of the whole family.


Pssm-ID: 460181 [Multi-domain]  Cd Length: 55  Bit Score: 33.28  E-value: 5.19e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 971743042  111 LRRLRNEEKWKYQDIAEKYGITPTYASEVARGKRFP 146
Cdd:pfam01381   1 LKELREELGLSQEELAEKLGVSRSTISKIENGKREP 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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