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Conserved domains on  [gi|971820170|ref|YP_009214143|]
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DUF4236 domain-containing protein [Clostridium phage phiCD146]

Protein Classification

DUF4236 domain-containing protein( domain architecture ID 10623808)

DUF4236 domain-containing protein is functionally uncharacterized, but is thought to be a membrane protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4236 pfam14020
Protein of unknown function (DUF4236); This family of proteins is functionally uncharacterized. ...
 3-56 2.10e-20

Protein of unknown function (DUF4236); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 69 and 402 amino acids in length.


:

Pssm-ID: 433649  Cd Length: 55  Bit Score: 80.68  E-value: 2.10e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 971820170    3 FKFRKSINLGGGLKLNINKNSVSISGGVKGARVSVNSKGKSTTTIGVPGTGLYY 56
Cdd:pfam14020   1 FRFRKSIKIGPGVRLNLSKSGISVSVGVRGARVTVGARGGVYTTVGIPGTGLSY 54
 
Name Accession Description Interval E-value
DUF4236 pfam14020
Protein of unknown function (DUF4236); This family of proteins is functionally uncharacterized. ...
 3-56 2.10e-20

Protein of unknown function (DUF4236); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 69 and 402 amino acids in length.


Pssm-ID: 433649  Cd Length: 55  Bit Score: 80.68  E-value: 2.10e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 971820170    3 FKFRKSINLGGGLKLNINKNSVSISGGVKGARVSVNSKGKSTTTIGVPGTGLYY 56
Cdd:pfam14020   1 FRFRKSIKIGPGVRLNLSKSGISVSVGVRGARVTVGARGGVYTTVGIPGTGLSY 54
 
Name Accession Description Interval E-value
DUF4236 pfam14020
Protein of unknown function (DUF4236); This family of proteins is functionally uncharacterized. ...
 3-56 2.10e-20

Protein of unknown function (DUF4236); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 69 and 402 amino acids in length.


Pssm-ID: 433649  Cd Length: 55  Bit Score: 80.68  E-value: 2.10e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 971820170    3 FKFRKSINLGGGLKLNINKNSVSISGGVKGARVSVNSKGKSTTTIGVPGTGLYY 56
Cdd:pfam14020   1 FRFRKSIKIGPGVRLNLSKSGISVSVGVRGARVTVGARGGVYTTVGIPGTGLSY 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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