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Conserved domains on  [gi|1002160252|ref|YP_009230396|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Ara ararauna]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.19e-150

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 426.93  E-value: 2.19e-150
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252   1 MTPLTKLISASSIFLGTTITITSNHWMMAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAVASALLLFSGMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  81 TGQWDITQLSYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNPTLLTSMSIM 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 161 SIALGGWMGLNQTQTRKIMAFSSISHIGWMTIIIIHNPKLTLLAFYIYILMTASIFLSMNTTNTVNLSTLMTSWTKTPML 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELATAATIISLLSLLNLFFYLRLTYCSTITLPPNPSNKMKQWSTKTP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1002160252 321 TNALIPTLTSLSISLLPLTPMMLTTT 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.19e-150

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 426.93  E-value: 2.19e-150
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252   1 MTPLTKLISASSIFLGTTITITSNHWMMAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAVASALLLFSGMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  81 TGQWDITQLSYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNPTLLTSMSIM 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 161 SIALGGWMGLNQTQTRKIMAFSSISHIGWMTIIIIHNPKLTLLAFYIYILMTASIFLSMNTTNTVNLSTLMTSWTKTPML 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELATAATIISLLSLLNLFFYLRLTYCSTITLPPNPSNKMKQWSTKTP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1002160252 321 TNALIPTLTSLSISLLPLTPMMLTTT 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.70e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 105.86  E-value: 2.70e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  23 SNHWMMAWIGLEINTLSIIPLI-SKSHHPRAIEATTKYFLVQAVASALLLFSGMTNAWHTGQWDITQLSYPPSCT----- 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  97 ------LLTTAIAIKLGLTPFHFWFPEVLQGSSFT-TALLLSTVMKLPPttILLITSHSLNPT-------LLTSMSIMSI 162
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGG--YGLIRRSLLYLPsspfiqqILLILAIISM 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 163 ALGGWMGLNQTQTRKIMAFSSISHIGWMTIII----IHNPKLTLLAFYIYILMTASIFL-----SMNTTNTVNLSTLMTS 233
Cdd:pfam00361 159 LLGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGL 238

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1002160252 234 WTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 239 AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 15-281 3.02e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 108.67  E-value: 3.02e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  15 LGTTITITSNHWMMAWIGLEINTLSIIPLIS-KSHHPRAIEATTKYFLVQAVASALLLF--------SGMTN----AWHT 81
Cdd:COG1007   113 LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagiAAAL 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  82 GQWDITQLSYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKL----PPTTILLITSHSLNP---TLL 154
Cdd:COG1007   193 AAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqLLL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 155 TSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIIIIHNPKLTL--LAFY--IYILMTASIF-----LSMNTTNTV 225
Cdd:COG1007   273 AVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYllAYLFMNLGAFavillLSRKGGEAE 352

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1002160252 226 NLSTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELATAATI 281
Cdd:COG1007   353 EIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVI 408
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 13-282 1.30e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 92.32  E-value: 1.30e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  13 IFLGTTITITSNHWMMAWIGLEINTLSIIPLIS-KSHHPRAIEATTKYFLVQAVASALLLF--------------SGMTN 77
Cdd:TIGR01770 111 ALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygftgslnfEDLLL 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  78 AWHTGQWDITQLSYppSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILL-------ITSHSLN 150
Cdd:TIGR01770 191 FLSNGMLNISLLLL--GIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAW 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 151 PTLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGW----MTIIIIHNPKLTLLAFYIYILMTASIFLSM------N 220
Cdd:TIGR01770 269 QIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiligLLAGTLEGIKAVLFYIFIYALMSLGAFGVLsllrsyK 348

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002160252 221 TTNTVNLSTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELATAATII 282
Cdd:TIGR01770 349 DEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIA 410
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.19e-150

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 426.93  E-value: 2.19e-150
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252   1 MTPLTKLISASSIFLGTTITITSNHWMMAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAVASALLLFSGMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  81 TGQWDITQLSYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNPTLLTSMSIM 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 161 SIALGGWMGLNQTQTRKIMAFSSISHIGWMTIIIIHNPKLTLLAFYIYILMTASIFLSMNTTNTVNLSTLMTSWTKTPML 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELATAATIISLLSLLNLFFYLRLTYCSTITLPPNPSNKMKQWSTKTP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1002160252 321 TNALIPTLTSLSISLLPLTPMMLTTT 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-344 2.02e-124

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 361.04  E-value: 2.02e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252   1 MTPLTKLISASSIFLGTTITITSNHWMMAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAVASALLLFSGMTNAWH 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  81 TGQWDITQLSYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTtILLITSHSLNPTLLTSMSIM 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPF-ALILQIAPTNPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 161 SIALGGWMGLNQTQTRKIMAFSSISHIGWMTIIIIHNPKLTLLAFYIYILMTASIFLSMNTTNTVNLSTLMTSWTKTPML 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELATAATIISLLSLLNLFFYLRLTYCSTITLPPNPSNKMKQWSTKTP 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                         330       340
                  ....*....|....*....|....*
gi 1002160252 321 TNAL-IPTLTSLSISLLPLTPMMLT 344
Cdd:MTH00135  320 QLTLpLAISTTATLMLLPLTPAILA 344
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-344 5.30e-123

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 357.31  E-value: 5.30e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252   1 MTPLTKLISASSIFLGTTITITSNHWMMAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAVASALLLFSGMTNAWH 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  81 TGQWDITQLSYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNPTLLTSMSIM 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 161 SIALGGWMGLNQTQTRKIMAFSSISHIGWMTIIIIHNPKLTLLAFYIYILMTASIFLSMNTTNTVNLSTLMTSWTKTPML 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELATAATIISLLSLLNLFFYLRLTYCSTITLPPNPSNKMKQWSTKTP 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                         330       340
                  ....*....|....*....|....
gi 1002160252 321 TNALIPTLTSLSISLLPLTPMMLT 344
Cdd:MTH00070  321 TNNLLSLTIILSLMLLPITPTILN 344
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-346 5.46e-111

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 326.80  E-value: 5.46e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252   1 MTPLTKLISASSIFLGTTITITSNHWMMAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAVASALLLFSGMTNAWH 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  81 TGQWDITQLSYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNPTLLTSMSIM 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 161 SIALGGWMGLNQTQTRKIMAFSSISHIGWMTIIIIHNPKLTLLAFYIYILMTASIFLSMNTTNTVNLSTLMTSWTKTPML 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELATAATIISLLSLLNLFFYLRLTYCSTITLPPNPSN-KMKQWSTKT 319
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNmKMKWQFENT 320

                         330       340
                  ....*....|....*....|....*..
gi 1002160252 320 PTNALIPTLTSLSISLLPLTPMMLTTT 346
Cdd:MTH00105  321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 7.04e-97

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 291.10  E-value: 7.04e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252   1 MTPLTKLISASSIFLGTTITITSNHWMMAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAVASALLLFSGMTNAWH 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  81 TGQWDITQLSYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNPTLLTSMSIM 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 161 SIALGGWMGLNQTQTRKIMAFSSISHIGWMTIIIIHNPKLTLLAFYIYILMTASIFLSMNTTNTVNLSTLMTSWTKTPML 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELATAATIISLLSLLNLFFYLRLTYCSTITLPPNPSNKMKQWSTKTP 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                         330       340
                  ....*....|....*....|....*.
gi 1002160252 321 TNALIPTLTSLSISLLPLTPMMLTTT 346
Cdd:MTH00200  321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 11-336 5.13e-79

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 245.23  E-value: 5.13e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  11 SSIFLGTTITITSNHWMMAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAVASALLLFSGMTNAWHTGQWDITQLS 90
Cdd:MTH00041   11 TSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  91 YPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNPTLLTSMSIMSIALGGWMGL 170
Cdd:MTH00041   91 NTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGL 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 171 NQTQTRKIMAFSSISHIGWMTIIIIHNPKLTLLAFYIYILMTASIFLSMNTTNTVNLSTLMTSWTKTPMLSTTLMLTLLS 250
Cdd:MTH00041  171 NQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILS 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 251 LAGLPPLTGFLPKWLIIQELIKQELATAATIISLLSLLNLFFYLRLTYCSTITLPPNPSNKMKQWSTKTPTNALIPTLTS 330
Cdd:MTH00041  251 LGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGVILSI 330


                  ....*.
gi 1002160252 331 LSISLL 336
Cdd:MTH00041  331 LSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-343 1.93e-55

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 184.26  E-value: 1.93e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252   1 MTPLTKLISASSIFLGTTITITSNHWMMAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAVASALLLFSGMTNAWh 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  81 tgqwdITQLSYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILlitSHSLNPTLLTSMSIM 160
Cdd:MTH00160   81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 161 SIALGGWMGLNQTQTRKIMAFSSISHIGWMTIIIIHNPKLTLLAFYIYILMTASIFLSMNTTNTVNLSTLMTSWTKTPML 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELATAATIISLLSLLNLFFYLRLTYCSTITLppNPSNKMKQWSTKTP 320
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLN--YNKNKWNLKKKKNK 310

                         330       340
                  ....*....|....*....|...
gi 1002160252 321 TNALIPTLTSLSISLLPLTPMML 343
Cdd:MTH00160  311 FSLILNFLSFISLFGLILSSLLF 333
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 13-272 4.02e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 159.67  E-value: 4.02e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  13 IFLGTTITITSNHWMMAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAVASALLLFSGMTNAWHTGQWDITqlsyp 92
Cdd:MTH00144   13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM----- 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  93 pscTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPttILLITSHSLNPTLLTS---MSIMSIALGGWMG 169
Cdd:MTH00144   88 ---SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAP--LFLLSNFLDLYWLAYLlcvISVLSALVGSIGG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 170 LNQTQTRKIMAFSSISHIGWMTIIIIHNPKLTLLAFYIYILMTASIFLSMNTTNTVNLSTlMTSWTKTPMLSTTLMLTLL 249
Cdd:MTH00144  163 LNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKD-LGSLKPSYKTGLSIISLLL 241

                         250       260
                  ....*....|....*....|...
gi 1002160252 250 SLAGLPPLTGFLPKWLIIQELIK 272
Cdd:MTH00144  242 SLGGLPPFLGFCSKLLVLISSME 264
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-275 2.73e-42

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 149.54  E-value: 2.73e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252   1 MTPLTKLISASSIFLGTTITITSNHWMMAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAVASALLLFsGMTNAWH 80
Cdd:MTH00011    3 STFPTMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLL-GMTMMWS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  81 TgqwdITQLSYPPSCTLLTtAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNPTLLTSMSIM 160
Cdd:MTH00011   82 F----PSLLKNITALMLLV-SLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAM 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 161 SIALGGWMGLNQTQTRKIMAFSSISHIGWMTIIIIHNPKLTLLAFYIYILMTASIFLSMNTTNTVNLSTLMTSWTKTPML 240
Cdd:MTH00011  157 SALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTT 236

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1002160252 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEL 275
Cdd:MTH00011  237 SMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSM 271
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 11-271 1.88e-41

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 147.13  E-value: 1.88e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  11 SSIFLGTTITITSNHWMMAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAVASALLLFSGMTNAWHTgqwditqLS 90
Cdd:MTH00197    5 FIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  91 YPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHslNPTLLTSMSIMSIALGGWMGL 170
Cdd:MTH00197   78 SLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGM 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 171 NQTQTRKIMAFSSISHIGWMTIIIIHNPKLTLLAFYIYILMTASIFLSMNTTNTVNLSTLMTSWTKTPMLSTTLMLTLLS 250
Cdd:MTH00197  156 NQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLS 235

                         250       260
                  ....*....|....*....|.
gi 1002160252 251 LAGLPPLTGFLPKWLIIQELI 271
Cdd:MTH00197  236 LGGLPPLSGFFLKWLILTSLL 256
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-274 3.20e-27

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 109.73  E-value: 3.20e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  13 IFLGTTITITSNHWMMAWIGLEINTLSIIPLI-SKSHHPRAIEATTKYFLVQAVASALLLFS-----GMTNAWH------ 80
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcGTTGGLHlsyinl 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  81 --TGQWDITQLSYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLitSHSLNPTLLTSMS 158
Cdd:MTH00196   82 vlNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 159 IMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII----IHNPKLTLLAFYIYILMTASIF-----LSMNTTNTVNLST 229
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFsiilaLNVYKNLIIEFSG 239

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1002160252 230 LMTswtKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQE 274
Cdd:MTH00196  240 LSR---RLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQ 281
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.70e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 105.86  E-value: 2.70e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  23 SNHWMMAWIGLEINTLSIIPLI-SKSHHPRAIEATTKYFLVQAVASALLLFSGMTNAWHTGQWDITQLSYPPSCT----- 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  97 ------LLTTAIAIKLGLTPFHFWFPEVLQGSSFT-TALLLSTVMKLPPttILLITSHSLNPT-------LLTSMSIMSI 162
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGG--YGLIRRSLLYLPsspfiqqILLILAIISM 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 163 ALGGWMGLNQTQTRKIMAFSSISHIGWMTIII----IHNPKLTLLAFYIYILMTASIFL-----SMNTTNTVNLSTLMTS 233
Cdd:pfam00361 159 LLGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGL 238

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1002160252 234 WTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 239 AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 15-281 3.02e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 108.67  E-value: 3.02e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  15 LGTTITITSNHWMMAWIGLEINTLSIIPLIS-KSHHPRAIEATTKYFLVQAVASALLLF--------SGMTN----AWHT 81
Cdd:COG1007   113 LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagiAAAL 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  82 GQWDITQLSYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKL----PPTTILLITSHSLNP---TLL 154
Cdd:COG1007   193 AAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqLLL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 155 TSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIIIIHNPKLTL--LAFY--IYILMTASIF-----LSMNTTNTV 225
Cdd:COG1007   273 AVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYllAYLFMNLGAFavillLSRKGGEAE 352

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1002160252 226 NLSTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELATAATI 281
Cdd:COG1007   353 EIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVI 408
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 15-267 2.83e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 100.09  E-value: 2.83e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  15 LGTTITITSNHWMMAWIGLEINTLSIIPLIS-KSHHPRAIEATTKYFLVQAVASALLLFSGMTNAWHTGQWDITQLSYPP 93
Cdd:MTH00199  108 LGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINSIL 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  94 SC----TLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNPTLLTSmsIMSIALGGWMG 169
Cdd:MTH00199  188 TGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICA--VLSIIYGAIGA 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 170 LNQTQTRKIMAFSSISHIGW----MTIIIIHNPKLTLLAFYIYILMTA---SIFLSMNTTNT--VNLSTLMTswtKTPML 240
Cdd:MTH00199  266 LNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSIcsfSIILSLKLTKGliVEVSGLSR---KNPVI 342

                         250       260
                  ....*....|....*....|....*..
gi 1002160252 241 STTLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199  343 ALTLALTFLSIAGIPPLAGFLSKWLIL 369
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
15-281 4.32e-22

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 96.81  E-value: 4.32e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  15 LGTTITITSNHWMMAWIGLEINTLSIIPLIS-KSHHPRAIEATTKYFLVQAVASALLL--------------FSGMTNAW 79
Cdd:PRK05777  114 LGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgslsFAGIAKAL 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  80 HTGQWDITQLSYppSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKL----PPTTILLITSHSLNPT--- 152
Cdd:PRK05777  194 ADGSGNSLLLLF--GLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqq 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 153 LLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIIIIHNPKLTL--LAFY--IYILMTASIF-----LSMNTTN 223
Cdd:PRK05777  272 VLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYllAYLFMTLGAFgvislLRRKGGE 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1002160252 224 TVNLSTL-MTSWTKtPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELATAATI 281
Cdd:PRK05777  352 AESISDFaGLSKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVI 409
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 13-282 1.30e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 92.32  E-value: 1.30e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  13 IFLGTTITITSNHWMMAWIGLEINTLSIIPLIS-KSHHPRAIEATTKYFLVQAVASALLLF--------------SGMTN 77
Cdd:TIGR01770 111 ALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygftgslnfEDLLL 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  78 AWHTGQWDITQLSYppSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILL-------ITSHSLN 150
Cdd:TIGR01770 191 FLSNGMLNISLLLL--GIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAW 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 151 PTLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGW----MTIIIIHNPKLTLLAFYIYILMTASIFLSM------N 220
Cdd:TIGR01770 269 QIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiligLLAGTLEGIKAVLFYIFIYALMSLGAFGVLsllrsyK 348

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002160252 221 TTNTVNLSTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELATAATII 282
Cdd:TIGR01770 349 DEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIA 410
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 30-282 7.58e-19

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 86.74  E-value: 7.58e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  30 WIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAVASALLLFSGMTNAWHTGQWDITQLS-----YPPS-----CTLLT 99
Cdd:COG0651   133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAarlaeLDPGlllaaFALLL 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 100 TAIAIKLGLTPFHFWFPEVL-QGSSFTTALLLSTVMKLPP-------TTILLITSHSLNPTLLTSMSIMSIALGGWMGLN 171
Cdd:COG0651   213 VGFGIKAALFPLHFWLPDAYpAAPSPVSALLSGLLTKVGVyailrvlTLLFGADPALFLGTLLLVLGLLTMLVGALGALA 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 172 QTQTRKIMAFSSISHIGWMTIII-IHNPKLTLLAFYIYI---LMTASIFLS----MNTTNTVNLSTLMTSWTKTPMLSTT 243
Cdd:COG0651   293 QRDLKRLLAYSSVSQIGYILLGLgLGTPLGLAGALFHLLnhaLAKALLFLAagaiERATGTRDLDKLGGLGKRMPLTAAA 372

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1002160252 244 LMLTLLSLAGLPPLTGFLPKWLIIQELIKQELATAATII 282
Cdd:COG0651   373 FLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-281 2.11e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 77.21  E-value: 2.11e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  15 LGTTITITSNHWMMAWIGLEINTLSIIPLISKSHHPRAI---------EATTKYFLVQAVASALLLFSGMTNAWHTGQWD 85
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNEG 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  86 I--TQLSYPPSCT------------LLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLppTTILLITSHSLNP 151
Cdd:MTH00198  279 MlgTILSATLETTnielrqgslgylFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 152 TLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIIIIHNPKLTLLAFYIYILM-TASIFLSMNTTNTVN---- 226
Cdd:MTH00198  357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTyLVSALASFTVICTLEefgt 436

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002160252 227 --------------------LSTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELATAATI 281
Cdd:MTH00198  437 rtptsrqrdgsfgnynlvrrLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSI 511
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-336 8.43e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 69.14  E-value: 8.43e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  33 LEINTLSIIPLISKSHHPRAIEATTKYFLVQAVASALLLFS-GMTNAwHTGQWDITQLS--YPPSCTLLT------TAIA 103
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAgaLAENPTVVTafgfvlLALA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 104 IKLGLTPFHFWFPEVLQG-SSFTTALLLSTVMKLPPTTILLITSHSLNPTLLTSMS---------IMSIALGGWMGLNQT 173
Cdd:PRK08375  214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTVFGGDFRFALGlgwllavlaLLSMLVGSLAALGQD 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 174 QTRKIMAFSSISHIGWMTIIIIHNPKLTLLAFYIYI----LMTASIFLS----MNTTNTVNLSTLMTSWTKTPMLSTTLM 245
Cdd:PRK08375  294 DVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhaLMKGALFLAagaiEVTYGTRRLSELSGLGRRMPLTAAAFA 373

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 246 LTLLSLAGLPPLTGFLPKWLIIQELIKQELATAATIISLLSLLNLFFYLRLTYCSTITLPPNPSNkmkQWSTKTPTNALI 325
Cdd:PRK08375  374 VASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPPGSE---APKQEAPLGMLA 450

                         330
                  ....*....|.
gi 1002160252 326 PTLTSLSISLL 336
Cdd:PRK08375  451 PSLALALLSLL 461
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-263 1.72e-12

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 68.11  E-value: 1.72e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  51 RAIEATTKYFLVQAVASALLL--FSGM--TNAWHTGQWDI------TQLSYPPSC----TLLTTAIAIKLGLTPFHFWFP 116
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVygFSWLygLSGGEIELQEIvnglinTQMYNSPGIsialIFITVGIGFKLSLAPFHQWTP 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 117 EVLQGSSFTTALLLSTVMKLP----PTTILLITSHSLNP---TLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGW 189
Cdd:CHL00049  239 DVYEGSPTPVVAFLSVTSKVAasalATRIFDIPFYFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 190 MTI-IIIHNPK------LTLLAFYIYI-LMT-ASIFLSMNTTNTVNLSTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGF 260
Cdd:CHL00049  319 VIIgIIVGDSNdgyasmITYMLFYIFMnLGTfACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGF 398


                  ...
gi 1002160252 261 LPK 263
Cdd:CHL00049  399 FGK 401
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 38-192 7.92e-12

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 65.87  E-value: 7.92e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  38 LSIIP---LISKSHHPRAIEATTKYFLVQAVASALLLFSGMTNAWHTGQW-----DITQLSYPPS-----CTLLTTAIAI 104
Cdd:COG1008   142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTaqlllFLAFFIAFAV 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 105 KLGLTPFHFWFPEVLQGSSFTTALLLSTVMK-----------LPpttILLITSHSLNPTLLTsMSIMSIALGGWMGLNQT 173
Cdd:COG1008   222 KVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLkmggygllrfaLP---LFPEASAYFAPLLAA-LGVIGIIYGALVALAQT 297

                         170
                  ....*....|....*....
gi 1002160252 174 QTRKIMAFSSISHIGWMTI 192
Cdd:COG1008   298 DLKRLIAYSSVSHMGFVLL 316
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 9.68e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 62.81  E-value: 9.68e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  33 LEINTLSIIPLIS-KSHHPRAIEATTKYFLVQAVASALLLFSgmtNAWHTGQWDITQLSY-------PPSCT------LL 98
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLG---IALLYGQYGTLNMAYlavkmseNPTVVakialaLF 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  99 TTAIAIKLGLTPFHFWFPEVLQG--SSFTTALLLSTVMKLPPTTILLITSHSLNPTLLTSMSIMSI------ALGGWMGL 170
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALARVLFSIYGPAINLATVGWVIIIlgcltmFVGVAMAV 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 171 NQTQTRKIMAFSSISHIGWM------TIIIIHNPKL-----TLLAFYIY-----ILMTASIFLS----MNTTNTVNLSTL 230
Cdd:PRK08376  307 VQKDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMasygeIALAGGIYhivnhALYKALLFLTagavIYETGTRNLNEL 386

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1002160252 231 MTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376  387 GGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 23-282 7.75e-09

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 56.93  E-value: 7.75e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  23 SNHWMMAWIGLEINTLS---IIPLISKshhpRAIEATTKYFLVQAVASALLLFSGMTNAWHTGQWDITQ----LSYPPS- 94
Cdd:PRK08668  117 ANDLLTLYIFWEIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADisqgLINDTSt 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  95 -----CTLLTTAIAI-KLGLTPFHFWFPEV--LQGSSFTTAL----------LLSTVMKLPPTTILLIT-----SHSLNP 151
Cdd:PRK08668  193 gfaliVFLFLLAFGVaKAGIFPLHVWAPDAysEAPQSFSAVLsgqlsklgayGFLLVLYVLPGTKLFSEfgtyrGVPLFN 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 152 TLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWmtiIIIHNPKLTLLAF-------YIYILMTASIFLSMNT--- 221
Cdd:PRK08668  273 YILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGY---ILVGLGLGTSLGFagglfhvFNHALFKGLFFLIFAAviy 349

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002160252 222 -TNTVNLSTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELATAATII 282
Cdd:PRK08668  350 rTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
23-263 1.14e-08

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 56.21  E-value: 1.14e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  23 SNHWMMAWIGLEinTLSIIPLISKSH---HPRAIEATTKYFLVQAVASALLLF---------SGMTNAWHTGQWDITQLS 90
Cdd:PRK02504  129 ATELVMIFISLE--TLSIASYLLTGYmkrDPRSNEAALKYLLIGAASSAIFLYgssllyglsGGSTQLSAIALALITSPS 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  91 YPPSCTLL--TTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTI---LLITSHSLNPT----LLTSMSIMS 161
Cdd:PRK02504  207 LGLALALVfvIAGIAFKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwklLFTALAILS 286

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 162 IALGGWMGLNQTQTRKIMAFSSISHIGWMTIIIIHNPKLTLLAFYIYILmtasIFLSMN------------TTNTVNLST 229
Cdd:PRK02504  287 MVLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLVAGTEAGYASMVFYLL----AYLFMNlgafacvilfslRTGTDQISD 362

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1002160252 230 LMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK02504  363 YAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-194 1.72e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 52.45  E-value: 1.72e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  13 IFLGTTITITSNHWMMAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAVA------SALLLFSGMTNAWHTGQWDI 86
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  87 TQLS-----YPPSCTLLT-----TAIAIKLGLTPFHFWFPEV-LQGSSFTTALLLSTVMKLPPTTILLITS-------HS 148
Cdd:PRK08676  191 TELAahaslLSPSVLGASflfifIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1002160252 149 LNPTLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII 194
Cdd:PRK08676  271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-268 1.87e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 52.63  E-value: 1.87e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  50 PRAIEATTKYFLVQAVASALLLFS----GMTNAWHTGQWDITQLSYPPSCTLLT-----TAIAIKLGLTPFHFWFPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAilglYFLGGGTFDLLELLNLPLPFGVQTWLflaffIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 120 QGSSFTTALLLSTVMKLPPTTILLI-------TSHSLNPtLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTI 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFnlplfpdASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 193 IIIHNPKLTLLAFYIYI----LMTASIFLSMNT----TNTVNLSTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKW 264
Cdd:TIGR01972 311 GIFSFNELGISGAVFQMishgLITAALFLLVGVlyerAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEF 390


                  ....
gi 1002160252 265 LIIQ 268
Cdd:TIGR01972 391 LILL 394
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 21-271 2.55e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 49.00  E-value: 2.55e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  21 ITSNHWMMAWIGLEINTLSIIPLISKSHH-PRAIEATTKYFLVQAVASALLLFSGMTNAWHTGQWDITQL-----SYPPS 94
Cdd:COG1009   128 VLSDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaapTILSS 207

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  95 CTLLTTAIAI------KLGLTPFHFWFPEVLQGSSFTTALLLSTVMKlpptTI---LLITSH---SLNPTLLTSMSIMSI 162
Cdd:COG1009   208 PLLTLILLLLllgafgKSAQFPLHFWLPDAMEGPTPVSALLHAATMV----KAgvyLLARLSplfALSPVWLTVVAIIGA 283

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 163 A---LGGWMGLNQTQTRKIMAFSSISHIGWMTIIIihnpKLTLLAFYIYILMT-----ASIFLS----MNTTNTVNLSTL 230
Cdd:COG1009   284 ItalFAALIALAQTDIKRVLAYSTVSQLGYMFLAL----GVGAYVAALFHLLThaffkALLFLGagsvIHATGTRDIRKM 359

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1002160252 231 MTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELI 271
Cdd:COG1009   360 GGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAAL 400
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 80-263 4.03e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 48.77  E-value: 4.03e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  80 HTGQWDITQL-SYPPSCTLLTTAIAI-------KLGLTPFHFWFPEVLQGSSFTTALLLSTVM---------KLPPTtil 142
Cdd:PRK12644  183 AAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG--- 259

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 143 LITSHSLNPTLLTsMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII-IHNPKLTL--LAFYI-YILMTASIFLS 218
Cdd:PRK12644  260 FADVPVWRPTVLV-LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVgIGTRDAALagLAMLLaHALFKAALFLV 338

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1002160252 219 M----NTTNTVNLSTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644  339 VgiidHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 38-194 5.71e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 47.89  E-value: 5.71e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  38 LSIIP---LISKSHHPRAIEATTKYFLVQAVASALLLFS----GMTNAWHTGQWDITQL-SYPPSCTLLT-------TAI 102
Cdd:PRK05846  142 AMLIPmyfLIGVWGGKNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLlNLPLPPGVQYwlflaffIAF 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 103 AIKLGLTPFHFWFPEVLQGSSFTTALLLSTVM-----------KLPpttILLITSHSLNPTLLTsMSIMSIALGGWMGLN 171
Cdd:PRK05846  222 AVKMPMFPLHTWLPDAHVQAPTAGSVLLAGILlkmgaygllrfSLP---LFPDASHEFAPIIIT-LGVIAIIYGALVALA 297

                         170       180
                  ....*....|....*....|...
gi 1002160252 172 QTQTRKIMAFSSISHIGWMTIII 194
Cdd:PRK05846  298 QTDIKKLIAYSSISHMGFVTLGI 320
PRK12650 PRK12650
DUF4040 family protein;
31-282 4.97e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 45.03  E-value: 4.97e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  31 IGLEINTLSIIPLISKSHhPRAIEATTKYFLVQAVASALLLFSGMTNAWHTGQWDITQLSYPPS---CTLLTTAIAIKLG 107
Cdd:PRK12650  137 VAWELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVwaeKPGLTTVVAVLIA 215

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 108 LT--------PFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITS--HSLNPT---LLTSMSIMSIALGGWMGLNQTQ 174
Cdd:PRK12650  216 VAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSpvFHDVAVwnwLLIIVGMITALMGAVFAVQKTD 295

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 175 TRKIMAFSSISHIGWMTIIIIHNPKLTLLAFYIYI----LMTASIFLSM----NTTNTVNLSTLMTSWTKTPMLSTTLML 246
Cdd:PRK12650  296 LKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFMLIgvvdHQAGTRDIRRLGSLWRRMPFTFVSVTI 375

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1002160252 247 TLLSLAGLPPLTGFLPKWLIIQELIKQELATAATII 282
Cdd:PRK12650  376 AALSMAAVPPLFGFVSKEGMLTAFLEAPGGNAGVVL 411
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-194 5.62e-05

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 44.64  E-value: 5.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  55 ATTKYFLVQAVASALLLFSGMTNAWHTGQ--WDITQL---SYPPSCTLLT-----TAIAIKLGLTPFHFWFPEVLQGSSF 124
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELgakSYPLALELLLyagflIAFGVKLPIFPLHTWLPDAHGEASA 217

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1002160252 125 TTALLLSTVM-KLPPTTI------LLITSHSLNPTLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII 194
Cdd:PRK12561  218 PVSMILAGVLlKMGGYALirfnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGI 294
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-192 6.74e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 44.54  E-value: 6.74e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  20 TITSNHWMMAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAVASALLLFS---------------GMTNAW----- 79
Cdd:PRK06458  124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGtilvyanaatvmgdgEMAILWtellk 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  80 HTGQWDitqlsypPSCTLLTTAIAI-----KLGLTPFHFWFPEV-LQGSSFTTALLLSTVMKLPPTTIL---LITSHSLN 150
Cdd:PRK06458  204 HASLLD-------PTLMKLAFVFLLigfgtKVGLFPMHAWLPDAhSEAPSPVSALLSGVLLNVALYAVLryyILIDAAIG 276

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1002160252 151 P----TLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTI 192
Cdd:PRK06458  277 SdfpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 50-268 1.94e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 43.03  E-value: 1.94e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  50 PRAIEATTKYFLVQAVASALLLFS-GMTNAwHTGQWDITQLSYP----PSCT------LLTTAIAIKLGLTPFHFWFPEv 118
Cdd:PRK12665  157 AARVRAGVTYVMVSMVSSLLFLIGiALVYA-ATGTLNMADLAVRldelPSGTrtalfaVLLVAFGIKAAVFPLSFWLPD- 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 119 lqgsSFTTALLLST-----------VMKLPPTTILLITSHSLNpTLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHI 187
Cdd:PRK12665  235 ----SYPTAPAPVTavfaglltkvgVYAIIRTHTLLFPGGGLD-TLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHI 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 188 GWMTIIIIHNPKLTLLA--FYI--YILMTASIFLSM----NTTNTVNLSTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTG 259
Cdd:PRK12665  310 GYMVFGIALSTVAGLSGaiYYVahHITVQTTLFLVVglieRQAGSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSG 389


                  ....*....
gi 1002160252 260 FLPKWLIIQ 268
Cdd:PRK12665  390 FIGKVALLE 398
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 107-272 2.08e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 42.89  E-value: 2.08e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 107 GLTPFHFWFPEVLQGSSFTTALLLSTV-MKLPPTTILLITSHSLNPTL-----LTSMSIMSIALGGWMGLNQTQTRKIMA 180
Cdd:PRK08042  195 GIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYALMEHNIQRLLA 274

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 181 FSSISHIG--------WMTIIIIHNPKLTLLAFY--IYILMTASIFLSM---------NTTNTVNLSTLMTSWTKTPMLS 241
Cdd:PRK08042  275 YHTLENIGiillglgaGVTGIALEQPALIALGLVggLYHLLNHSLFKSVlflgagsvwFRTGHRDIEKLGGIGKKMPVIS 354

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1002160252 242 TTLMLTLLSLAGLPPLTGFLPKWLIIQELIK 272
Cdd:PRK08042  355 IAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 2.27e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 42.71  E-value: 2.27e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  34 EINTLSIIPLISKSHHPRAIEATTKYFLVQAVASALLLFSGMTNAWHTGQWDITQLSY-----PPSCTLLTTAIAIKLG- 107
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIHNallvnPTSPVIYGGLLLLIFGl 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 108 -----LTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLIT-----SHSLNP---TLLTSMSIMSIALGGWMGLNQTQ 174
Cdd:PRK06277  210 lygsgLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIfklfgGLSYFPsaqGVLIALSVLAMVFGVVMALLQTD 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 175 TRKIMAFSSISHIGWMTIIIIHNPKLTLLAFYIY----ILMTASIFLSMNT----TNTVNLSTLMTSWTKTPMLSTTLML 246
Cdd:PRK06277  290 YKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHainhVIYKSALFLGAGIvsyrTKTSNLRKLGGLLPVMPVVAFMVLC 369

                         250       260
                  ....*....|....*....|..
gi 1002160252 247 TLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK06277  370 AKLAISGVPPFNGFQSKLMLAQ 391
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
53-268 2.69e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 42.63  E-value: 2.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  53 IEATTKYFLVQAVASALLLFS--------GMTNAWHTGQwDITQLSYPPSCTLLT----TAIAIKLGLTPFhFWFPEVLQ 120
Cdd:PRK12663  157 LRGAIKYVVLNLIGSWLFLLGigllygtfGTLNMAHIAM-RLNDMGDTATLTTIAllflLAFGMKAALFPF-MWLPAAYH 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 121 GSSFTTALLLSTVMK-------LPPTTILLITSHSLNPTLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTI- 192
Cdd:PRK12663  235 TPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLg 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 193 IIIHNPK-LTLLAFY---IYILMTASIFLS---MNTTNTVNLSTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWL 265
Cdd:PRK12663  315 LALGTPAgINGAIFYlvhDMVVKTALFLIAgslVRLTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVL 394


                  ...
gi 1002160252 266 IIQ 268
Cdd:PRK12663  395 LVQ 397
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 110-282 3.65e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 42.21  E-value: 3.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 110 PFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNPT-----LLTSMSIMSIALGGWMGLNQTQTRKIMAFSSI 184
Cdd:PRK12647  213 PFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTplwqtILPLFGGLTMLTGALLAVRQTDLKLILAYSTV 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 185 SHIGWMTIIIIHNPKLTLLAFYIYI----LMTASIFLSMNT----TNTVNLSTLMTSWTKTPMLSTTLMLTLLSLAGLPP 256
Cdd:PRK12647  293 SALGTLVMLLGLGSELAIKAAVLFLvahsLYKGALFMVAGIidheTGTRDITKLGGLRRAMPITAAAALLAALSMAGLPP 372

                         170       180
                  ....*....|....*....|....*.
gi 1002160252 257 LTGFLPKWLIIQELIKQELATAATII 282
Cdd:PRK12647  373 LFGFLAKELIYEALLEAPLWSLILTV 398
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 104-272 5.13e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 41.64  E-value: 5.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 104 IKLGLTPFHFWFPEVLQGS-SFTTALLLSTVMKLPPTTI-----------LLITSHSLNpTLLTSMSIMSIALGGWMGLN 171
Cdd:PRK12662  221 IKAALFPFHKWLIQAYSEApSFISVFFSGTSTKVMIYLIirivydvfkanFVFTTLPFN-NVFMILAALAIVFGSVLAIL 299

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 172 QTQTRKIMAFSSISHIGWMTIIIIHNPKLTLLAFYIYI----LMTASIFLSMNTT----NTVNLSTLMTSWTKTPMLSTT 243
Cdd:PRK12662  300 SKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMVSGSIsyhfGTTKLEDCLNLWKSMPKITLA 379

                         170       180
                  ....*....|....*....|....*....
gi 1002160252 244 LMLTLLSLAGLPPLTGFLPKWLIIQELIK 272
Cdd:PRK12662  380 FVLLSLSLIGMPPTSGFVAKWYILDAFIK 408
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
38-204 5.77e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 41.61  E-value: 5.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  38 LSIIPL---ISKSHHPRAIEATTKYFLVQAVASALLLFSGMTNAWHTG--QWDITQL---SYPPSCTLLTTA-----IAI 104
Cdd:PRK06473  138 LELIPLyllIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGI 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 105 KLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNPTL-------LTSMSIMSIALGGWMGLNQTQTRK 177
Cdd:PRK06473  218 KIPLVPFHTWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAwvylapwLATWAVVSVLYGASCAIAQKDMKK 297

                         170       180
                  ....*....|....*....|....*..
gi 1002160252 178 IMAFSSISHIGWMTIIIIHNPKLTLLA 204
Cdd:PRK06473  298 MVAYSSIGHMGYILLAAAAATPLSILA 324
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 27-271 8.77e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 41.09  E-value: 8.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  27 MMAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAVASALLLFSGMTNAWHTGQWDITQLSYPPS--CTLLTTAIAI 104
Cdd:PRK07234  117 ISLYVALEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATADPeaFALIALGLLV 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 105 KLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNPT--LLTSMSIMSIALGGWMGLNQTQTRKIMAFS 182
Cdd:PRK07234  197 KGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLdlIVRIFGVGTALLGVLFALLEKDLKRMLAFS 276

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 183 SISHIGWmtiiIIHNPKLTLLAFYIYILMTASIFLSMNT----TNTVNLSTLMTSWTKTPMLSTTLMLtllslAGLPPLT 258
Cdd:PRK07234  277 TISQLGF----ILAAPLVGGLYALAHGLVKSTLFLCAGAlpsrNFTELISQMLGIGKWIPLTMASFSI-----AGFPLLA 347

                         250
                  ....*....|...
gi 1002160252 259 GFLPKWLIIQELI 271
Cdd:PRK07234  348 GFVSKVLTLKNLL 360
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 295-340 1.09e-03

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 36.47  E-value: 1.09e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1002160252 295 RLTYCSTITLPPNPSNKMKQWSTKTPTN-ALIPTLTSLSISLLPLTP 340
Cdd:pfam06444   5 RLSYSTTLTLFPNTNNSKMKWRFNSTKNtLLLPTLTTLSILLLPLTP 51
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 1.11e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 40.97  E-value: 1.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  48 HHPRAIEATTKYFLVQAVASALLLFSGMTNAWHTGQWDITQLSYPPSCT--------LLTTAIAIKLGLT------PFHF 113
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELIenikghplFLITLILIFIGAAaksaqgPFYI 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 114 WFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNPT-----LLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIG 188
Cdd:PRK12649  236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 189 WMTII----IIHNPKLTLLAFYIYIL----MTASIFLSM----NTTNTVNLSTLMTSWTKTPMLSTTLMLTLLSLAGLPP 256
Cdd:PRK12649  316 YLMTMygytTYHEPGLGVAAATFHLLnhatFKACLFLVAgivaHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIPP 395


                  ....*..
gi 1002160252 257 LTGFLPK 263
Cdd:PRK12649  396 LNGFLSK 402
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 105-268 1.26e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 40.71  E-value: 1.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 105 KLGLtpfHFWFPEVLQGSSFTTALLLSTVMkLPPTTILLITSHSLNPTLLTSMSIMSI--ALGGW----MGLNQTQTRKI 178
Cdd:MTH00032  241 QLGL---HTWLPDAMEGPTPVSALIHAATM-VTAGVFLMIRSFPLFEKAPLTLLIITIfgALTAFfaatVGLVQNDLKKV 316

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 179 MAFSSISHIGWMTIII----IHNPKLTLL---AFYIYIL-MTASIFLSMNTTNTVNLSTLMTSWTKTPMLSTTLMLTLLS 250
Cdd:MTH00032  317 IAYSTCSQLGYMVLIIgiegSHNVGLFHLvnhAFFKALLfLSAGSVIHSTTVDEQDMRKMGGLIHSIPFTYTMMLIGSFS 396

                         170
                  ....*....|....*...
gi 1002160252 251 LAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00032  397 IMGLPYLTGFYSKDLILE 414
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-219 1.34e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 40.29  E-value: 1.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 101 AIAIKLGLTPFHFWFPEV-LQGSSFTTALLLSTVMKLP-------PTTILLITSHSLNPTLLtSMSIMSIALGGWMGLNQ 172
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAhVEAPVAGSVLLAGILLKLGgyglvrlSWPILPLGAQNLAPAVI-AMGIVGIVYGSFATCRQ 317

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1002160252 173 TQTRKIMAFSSISHIGWMTIIIIHNPKLTLLAfYIYILMTASIFLSM 219
Cdd:MTH00226  318 IDVKRLVAYSSVAHMGLVSITLVTHDIIGLTG-SIFIMLAHGIVSSL 363
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 59-282 1.45e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 40.48  E-value: 1.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  59 YFLVQAVASALLLFSGMTNAWHTGQWDITQLSYPP-----SCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTV 133
Cdd:PRK08667  167 YFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSGV 246

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 134 M-KLPPTTILLITSHSLNPTLLTSMSIM-----SIALGGWMGLNQTQTRKIMAFSSISHIG--------WMTIIIIHNPK 199
Cdd:PRK08667  247 MlKVAVYGLVRFLMDVLSPELWWGVLILlagsiSALLGVIYALKEHDLKGLLAYSSIENIGiilmgiglYVIFGVYGLDT 326

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252 200 LTLLA-------------FYIYILMTA-SIFLSMNTTNTVNLSTLMTSwtkTPMLSTTLMLTLLSLAGLPPLTGFLPKWL 265
Cdd:PRK08667  327 LALLAlggalfhslnhalFKSLLFLTAgSVVHATGTRNIEKMGGLVKL---MPYTSALFLVGAVSIAALPPFNGFASELL 403

                         250
                  ....*....|....*..
gi 1002160252 266 IIQELIkQELATAATII 282
Cdd:PRK08667  404 LYESFF-QSFSVADPLI 419
ND2 MTH00059
NADH dehydrogenase subunit 2; Provisional
 19-137 1.60e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177131  Cd Length: 289  Bit Score: 39.91  E-value: 1.60e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  19 ITITSNHWMMAWIGLEINTLSIIPLI---SKSHHPRAIEATTKYFLVQAVASALLLfSGmtnawhtgqwditqLSYPPSC 95
Cdd:MTH00059   21 LCLVSDSLLGFWVFLELCGLSLIPCFflsSNSNVLNFYSSLLSYIVMSGLSSSLLV-SG--------------LLFSDLY 85

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1002160252  96 TLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLP 137
Cdd:MTH00059   86 FFIFFGFVVKFGLFPFMFWVYRVFSNSSWVVIWLISVVMKFP 127
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
18-136 3.15e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 39.30  E-value: 3.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160252  18 TITITSNHW---MMAW--IGLEINTLsiipLISKSHHPRAIEATTKYFLVQAVASALLLFSGMTNAWHTGQWDITQL--- 89
Cdd:PRK08168  114 HLLVLSDHLlvlIAAWaaISLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLSALwah 189

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1002160252  90 --SYPPS------CTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKL 136
Cdd:PRK08168  190 laAQGASpslqaaALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAGVVNL 244
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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