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Conserved domains on  [gi|1002160293|ref|YP_009230434|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Primolius maracana]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009570)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 6-326 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 214422  Cd Length: 323  Bit Score: 579.93  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293   6 TSSTYPIMALTYMIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPIRPSTSSPLLFLTTPML 85
Cdd:MTH00111    3 TLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPIL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  86 ALLLALTIWTPLPLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVVLS 165
Cdd:MTH00111   83 ALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 166 GNYTLTTLVTVQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTL 245
Cdd:MTH00111  163 GGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 246 TSLLFLSPSTLSPSLELFPLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAGLPPY 325
Cdd:MTH00111  243 TTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQ 322


                  .
gi 1002160293 326 L 326
Cdd:MTH00111  323 L 323
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 6-326 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 579.93  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293   6 TSSTYPIMALTYMIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPIRPSTSSPLLFLTTPML 85
Cdd:MTH00111    3 TLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPIL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  86 ALLLALTIWTPLPLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVVLS 165
Cdd:MTH00111   83 ALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 166 GNYTLTTLVTVQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTL 245
Cdd:MTH00111  163 GGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 246 TSLLFLSPSTLSPSLELFPLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAGLPPY 325
Cdd:MTH00111  243 TTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQ 322


                  .
gi 1002160293 326 L 326
Cdd:MTH00111  323 L 323
NADHdh pfam00146
NADH dehydrogenase;
13-306 8.11e-113

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 329.05  E-value: 8.11e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  13 MALTYMIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPIRPSTSSPLLFLTTPMLALLLALT 92
Cdd:pfam00146   1 KILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  93 IWTPLPL--PFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVVLSGNYTL 170
Cdd:pfam00146  81 AFAVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 171 TTLVTVQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTSLLF 250
Cdd:pfam00146 161 SEIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLF 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1002160293 251 LSpSTLSPSLELFPLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTL 306
Cdd:pfam00146 241 LG-GWLGPFPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSL 295
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 12-306 3.02e-103

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 305.52  E-value: 3.02e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  12 IMALTYMIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPIRPSTSSPLLFLTTPMLALLLAL 91
Cdd:COG1005    13 IKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPAL 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  92 TIWTPLPL--PFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVVLSGNYT 169
Cdd:COG1005    93 LAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLN 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 170 LTTLVTVQE-PLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTSL 248
Cdd:COG1005   173 LSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATT 252

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002160293 249 LFL----SPSTLSPSLELFPLI-LATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTL 306
Cdd:COG1005   253 LFLggwlGPFPILPLGGLPGILwFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSL 315
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 6-326 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 579.93  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293   6 TSSTYPIMALTYMIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPIRPSTSSPLLFLTTPML 85
Cdd:MTH00111    3 TLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPIL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  86 ALLLALTIWTPLPLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVVLS 165
Cdd:MTH00111   83 ALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 166 GNYTLTTLVTVQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTL 245
Cdd:MTH00111  163 GGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 246 TSLLFLSPSTLSPSLELFPLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAGLPPY 325
Cdd:MTH00111  243 TTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQ 322


                  .
gi 1002160293 326 L 326
Cdd:MTH00111  323 L 323
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 5-326 8.66e-180

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 499.52  E-value: 8.66e-180
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293   5 NTSSTYPIMALTYMIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPIRPSTSSPLLFLTTPM 84
Cdd:MTH00134    3 STLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPM 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  85 LALLLALTIWTPLPLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVVL 164
Cdd:MTH00134   83 LALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIF 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 165 SGNYTLTTLVTVQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNT 244
Cdd:MTH00134  163 TGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNT 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 245 LTSLLFLSPSTLSPSLELFPLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAGLPP 324
Cdd:MTH00134  243 LSAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPP 322


                  ..
gi 1002160293 325 YL 326
Cdd:MTH00134  323 QL 324
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 5-324 6.01e-176

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 489.90  E-value: 6.01e-176
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293   5 NTSSTYPIMALTYMIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPIRPSTSSPLLFLTTPM 84
Cdd:MTH00071    2 MTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  85 LALLLALTIWTPLPLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVVL 164
Cdd:MTH00071   82 MALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 165 SGNYTLTTLVTVQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNT 244
Cdd:MTH00071  162 TGGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNT 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 245 LTSLLFLSPSTLSPSLELFPLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAGLPP 324
Cdd:MTH00071  242 LSTILFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPP 321
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 15-326 1.52e-175

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 488.75  E-value: 1.52e-175
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  15 LTYMIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPIRPSTSSPLLFLTTPMLALLLALTIW 94
Cdd:MTH00104    7 LLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLALTMW 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  95 TPLPLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVVLSGNYTLTTLV 174
Cdd:MTH00104   87 IPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLI 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 175 TVQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTSLLFLSPS 254
Cdd:MTH00104  167 TTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTILFLGAF 246

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002160293 255 TLSPSLELFPLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAGLPPYL 326
Cdd:MTH00104  247 HNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 12-324 2.87e-143

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 406.60  E-value: 2.87e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  12 IMALTYMIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPIRPSTSSPLLFLTTPMLALLLAL 91
Cdd:MTH00218    6 INLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLAL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  92 TIWTPLPLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVVLSGNYTLT 171
Cdd:MTH00218   86 LLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSLE 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 172 TLVTVQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTSLLFL 251
Cdd:MTH00218  166 GFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVILFL 245

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002160293 252 SPSTLSPSLELfplilatKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAGLPP 324
Cdd:MTH00218  246 GTSLTTINLML-------KATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 12-326 1.64e-139

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 397.81  E-value: 1.64e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  12 IMALTYMIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPIRPSTSSPLLFLTTPMLALLLAL 91
Cdd:MTH00040    8 INLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLFLAL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  92 TIWTPLPLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVVLSGNYTLT 171
Cdd:MTH00040   88 LLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSFSLS 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 172 TLVTVQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTSLLFL 251
Cdd:MTH00040  168 SISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVILFL 247

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1002160293 252 SPStlSPSLELFPL---ILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAGLPPYL 326
Cdd:MTH00040  248 GGG--SPFNEIFPIniiIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPPNY 323
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 12-321 1.23e-113

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 331.32  E-value: 1.23e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  12 IMALTYMIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPIRPSTSSPLLFLTTPMLALLLAL 91
Cdd:MTH00195    6 IHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALAL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  92 TIWTPLPLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVVLSGNYTLT 171
Cdd:MTH00195   86 ILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDFT 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 172 TLVTVQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTSLLFL 251
Cdd:MTH00195  166 IMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILFL 245

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 252 SPSTLspslelfpLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAG 321
Cdd:MTH00195  246 GGGGT--------IIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
NADHdh pfam00146
NADH dehydrogenase;
13-306 8.11e-113

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 329.05  E-value: 8.11e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  13 MALTYMIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPIRPSTSSPLLFLTTPMLALLLALT 92
Cdd:pfam00146   1 KILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  93 IWTPLPL--PFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVVLSGNYTL 170
Cdd:pfam00146  81 AFAVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 171 TTLVTVQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTSLLF 250
Cdd:pfam00146 161 SEIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLF 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1002160293 251 LSpSTLSPSLELFPLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTL 306
Cdd:pfam00146 241 LG-GWLGPFPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSL 295
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 12-317 3.86e-111

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 324.80  E-value: 3.86e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  12 IMALTYMIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPIRPSTSSPLLFLTTPMLALLLAL 91
Cdd:MTH00193    6 INFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  92 TIWTPLPLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVVLSGNYTLT 171
Cdd:MTH00193   86 LIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNLL 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 172 TLVTVQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTSLLFL 251
Cdd:MTH00193  166 DFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVLMFL 245

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002160293 252 SPSTLSPSLELfplilatKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPI 317
Cdd:MTH00193  246 GGDLLSLLFYL-------KLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKI 304
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 21-308 1.19e-109

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 321.05  E-value: 1.19e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  21 ILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPIRPSTSSPLLFLTTPMLALLLALTIWTPLPLP 100
Cdd:MTH00143   14 VLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPSY 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 101 FPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVVLSGNYTLTTLVTVQEPL 180
Cdd:MTH00143   94 FSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQFSV 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 181 YLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTSLLFLspSTLSPSL 260
Cdd:MTH00143  174 WLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFF--GGSSVLF 251

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1002160293 261 ELFPLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTLSL 308
Cdd:MTH00143  252 LLGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSI 299
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 15-314 2.74e-104

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 307.35  E-value: 2.74e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  15 LTYMIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPIRPSTSSPLLFLTTPMLALLLALTIW 94
Cdd:MTH00225    8 LIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLILW 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  95 TPLPLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVVLSGNYTLTTLV 174
Cdd:MTH00225   88 SLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNLFDFS 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 175 TVQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTSLLFlsps 254
Cdd:MTH00225  168 YNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSILF---- 243

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 255 tLSPSLELFPLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTS 314
Cdd:MTH00225  244 -FGGFFVTIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLI 302
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 12-306 3.02e-103

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 305.52  E-value: 3.02e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  12 IMALTYMIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPIRPSTSSPLLFLTTPMLALLLAL 91
Cdd:COG1005    13 IKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPAL 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  92 TIWTPLPL--PFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVVLSGNYT 169
Cdd:COG1005    93 LAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLN 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 170 LTTLVTVQE-PLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTSL 248
Cdd:COG1005   173 LSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATT 252

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002160293 249 LFL----SPSTLSPSLELFPLI-LATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTL 306
Cdd:COG1005   253 LFLggwlGPFPILPLGGLPGILwFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSL 315
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 12-325 1.16e-102

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 303.96  E-value: 1.16e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  12 IMALTYMIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPIRPSTSSPLLFLTTPMLALLLAL 91
Cdd:MTH00054    6 IKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAF 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  92 TIWTPLPL--PFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVVLSGNYT 169
Cdd:MTH00054   86 IAWGVIPYgeGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLN 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 170 LTTLVTVQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTSLL 249
Cdd:MTH00054  166 LTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVIL 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 250 FL----SPSTLSPSLELFpLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAGLPPY 325
Cdd:MTH00054  246 FLggwlVISGPTSYFSNF-VWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPPF 324
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 12-324 4.47e-101

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 300.11  E-value: 4.47e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  12 IMALTYMIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPIRPSTSSPLLFLTTPMLALLLAL 91
Cdd:MTH00216   10 IKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTLAL 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  92 TIWTPLPLPFPLV--DLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVVLSGNYT 169
Cdd:MTH00216   90 IVWGVIPYERGVLisDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGSLS 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 170 LTTLVTVQEP-LYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTSL 248
Cdd:MTH00216  170 ITEIVLAQNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLTTI 249

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1002160293 249 LFLSpSTLSPSLELF--PLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAGLPP 324
Cdd:MTH00216  250 LFLG-GWLSPIKYFKggAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGFNGPPP 326
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-306 5.98e-97

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 289.40  E-value: 5.98e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293   1 MAWPNTSSTYPIMALTYMIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPIRPSTSSPLLFL 80
Cdd:PRK06076    3 LFGPDLLLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  81 TTPMLALLLALTIWTPLPL--PFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIIL 158
Cdd:PRK06076   83 LAPVIAFIPAFLAWAVIPFgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 159 LSVVVLSGNYTLTTLVTVQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYAN 238
Cdd:PRK06076  163 LAVVLLAGSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYIN 242

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1002160293 239 IMLMNTLTSLLFL---SPSTLSPSLELFPLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTL 306
Cdd:PRK06076  243 MILVSALITTLFLggwLPPFPLGGGIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSL 313
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 9-308 9.45e-84

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 255.48  E-value: 9.45e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293   9 TYPIMALTYMIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPIRPSTSSPLLFLTTPMLALL 88
Cdd:MTH00010    4 SFFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLI 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  89 LALTIWTPLPLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVVLSGNY 168
Cdd:MTH00010   84 LALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTF 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 169 TLTTLVTVQEPLYLVFSSwPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTSL 248
Cdd:MTH00010  164 SFSKIIMSQYSWILLMII-PLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSV 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 249 LFLSpstLSPSLELFPLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTLSL 308
Cdd:MTH00010  243 FFTS---FIPSIFISDLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTS 299
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 9-324 4.39e-82

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 252.25  E-value: 4.39e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293   9 TYPIMALTYMIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPIRPSTSSPLLFLTTPMLALL 88
Cdd:MTH00029    8 TVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFT 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  89 LALTIWTPLPLP--FPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVVLSG 166
Cdd:MTH00029   88 LAILAWAIVTMDqgVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 167 NYTLTTLVTVQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLT 246
Cdd:MTH00029  168 SLNISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMM 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 247 SLLFLSP--STLSPSLELFPLILA--------------TKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLHL 310
Cdd:MTH00029  248 TIFFLGGwlSPLDGIPTPPEAFSIfeqiasskssfwffTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLVI 327

                         330
                  ....*....|....
gi 1002160293 311 WHTSMPISYAGLPP 324
Cdd:MTH00029  328 LTAGILIGFNGVPP 341
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 13-306 4.98e-63

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 201.28  E-value: 4.98e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  13 MALTYMIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPIRPSTSSPLLFLTTPMLALLLALT 92
Cdd:MTH00090    1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  93 IWTPLPLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVVlsgNYTLTT 172
Cdd:MTH00090   81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIML---HNNSFS 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 173 LVTVQEPLYLVFsswplAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTSLLFLS 252
Cdd:MTH00090  158 FVSSFSLSLFVI-----YLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK 232

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1002160293 253 PSTLSpslelfplilatkALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTL 306
Cdd:MTH00090  233 FSFLM-------------LFLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 21-306 6.32e-47

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 160.09  E-value: 6.32e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  21 ILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPIRPSTSSPLLFLTTPMLALLLALTIWTPLPLP 100
Cdd:MTH00058   14 ILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSY 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 101 FPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVVLSGNYTLTTLVTVQEPL 180
Cdd:MTH00058   94 YSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSGWLS 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 181 YLVFssWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTSLLFLSPSTLSpSL 260
Cdd:MTH00058  174 VLLF--PLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFGGGFVS-IM 250

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1002160293 261 ELFPLILatkalllsssFLWVRASYPRFRYDQLMHLLWKNFLPLTL 306
Cdd:MTH00058  251 LLFHLLF----------FMWARATLPRVRYDYFVNFFWEYCLVLLI 286
ndhA CHL00032
NADH dehydrogenase subunit 1
 15-306 1.19e-46

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 161.27  E-value: 1.19e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  15 LTYMIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPIRPSTSSPLLFLTTPMLALLLALTIW 94
Cdd:CHL00032   34 LTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLSY 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  95 TPLPLPFPLV--DLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVVLSGnyTLTT 172
Cdd:CHL00032  114 LVIPFGYHLVlaDLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSN--SLST 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 173 LVTVQEPLYLVFSSWPL------AMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLT 246
Cdd:CHL00032  192 VDIVEAQSKYGFWGWNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFV 271

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 247 SLLFLSPSTLS----PSLELFP--------------LILATKALLlsssFLWV----RASYPRFRYDQLMHLLWKNFLPL 304
Cdd:CHL00032  272 TVLYLGGWNLSipyiFIPELFEinktggvfgttigiFITLAKTYL----FLFIsittRWTLPRLRMDQLLNLGWKFLLPI 347


                  ..
gi 1002160293 305 TL 306
Cdd:CHL00032  348 SL 349
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
12-308 1.97e-33

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 124.91  E-value: 1.97e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  12 IMALTYMIPILIAVAFLTL----VERKILSYMQSRKGPnivgpfGLLQPAADGVKLFIKEPIRPSTSSPLlFLTTPMLAL 87
Cdd:COG0650     1 MMLILLALLQLLLALLLAPlllgIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWL-FRAAPYVAL 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293  88 --LLALTIWTPLPLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVVLS 165
Cdd:COG0650    74 aaMLLAALLVPVLTTGPPLSFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLA 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160293 166 GNYTLTTLVTVQE---PLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLM 242
Cdd:COG0650   154 GSTSLSDIVAYQAahgPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVL 233

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002160293 243 NTLTSLLFLsPSTLSPSLELFPLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTLSL 308
Cdd:COG0650   234 LSLFVNLFL-PWGIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLAL 298
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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