NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1011057798|ref|YP_009240279|]
View 

NADH dehydrogenase subunit 1 (mitochondrion) [Haemonchus placei]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009558)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 4-287 3.98e-115

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177153  Cd Length: 284  Bit Score: 332.63  E-value: 3.98e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798   4 MLLLFMVFILQAIAFITLYERHLLGSSQNRLGPTKVTFMAVLQALLDGVKLLKKEQLLPVLSSDMMFLFIPGLSFVVMYL 83
Cdd:MTH00090    1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798  84 EWCVLPYVYNFISFEFAVLFFLCLIGFSVYTTMISGMVSKSKYGMIGALRASSQSISYEIAFSLYVLTAMIHFNFFSFVN 163
Cdd:MTH00090   81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798 164 QNLIVLLVIWLPFLVMIIAELNRAPFDFAEGESELVSGFNVEYGSVAFVLLFLSEYGSLIFFAVFMSMMFFNFSLVMSFL 243
Cdd:MTH00090  161 SFSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFKFSFLMLFL 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1011057798 244 IFSLFIYIRSSYPRFRYDMMMMMFWFKFLPLSLIFLSFFYVMLI 287
Cdd:MTH00090  241 IFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVLFI 284
 
Name Accession Description Interval E-value
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 4-287 3.98e-115

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 332.63  E-value: 3.98e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798   4 MLLLFMVFILQAIAFITLYERHLLGSSQNRLGPTKVTFMAVLQALLDGVKLLKKEQLLPVLSSDMMFLFIPGLSFVVMYL 83
Cdd:MTH00090    1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798  84 EWCVLPYVYNFISFEFAVLFFLCLIGFSVYTTMISGMVSKSKYGMIGALRASSQSISYEIAFSLYVLTAMIHFNFFSFVN 163
Cdd:MTH00090   81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798 164 QNLIVLLVIWLPFLVMIIAELNRAPFDFAEGESELVSGFNVEYGSVAFVLLFLSEYGSLIFFAVFMSMMFFNFSLVMSFL 243
Cdd:MTH00090  161 SFSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFKFSFLMLFL 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1011057798 244 IFSLFIYIRSSYPRFRYDMMMMMFWFKFLPLSLIFLSFFYVMLI 287
Cdd:MTH00090  241 IFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVLFI 284
NADHdh pfam00146
NADH dehydrogenase;
4-279 1.61e-60

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 194.23  E-value: 1.61e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798   4 MLLLFMVFILQAIAFITLYERHLLGSSQNRLGPTKVTFMAVLQALLDGVKLLKKEQLLPVLSSDMMFLFIPGLSFVVMYL 83
Cdd:pfam00146   1 KILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798  84 EWCVLPYVYNFI--SFEFAVLFFLCLIGFSVYTTMISGMVSKSKYGMIGALRASSQSISYEIAFSLYVLTAMIH---FNF 158
Cdd:pfam00146  81 AFAVIPFGPGLVlaDLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLagsLSL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798 159 FSFVNQ-----NLIVLLVIWLPFLVMIIAELNRAPFDFAEGESELVSGFNVEYGSVAFVLLFLSEYGSLIFFAVFMSMMF 233
Cdd:pfam00146 161 SEIVEAqaggwFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLF 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1011057798 234 FN------------FSLVMSFLIFSLFIYIRSSYPRFRYDMMMMMFWFKFLPLSLIFL 279
Cdd:pfam00146 241 LGgwlgpfplpgllWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANL 298
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-279 1.46e-55

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 182.25  E-value: 1.46e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798   1 MVLMLLLFMVFILQAIAFITLYERHLLGSSQNRLGPTKVTFMAVLQALLDGVKLLKKEQLLPVLSSDMMFLFIPGLSFVV 80
Cdd:COG1005    11 TLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIP 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798  81 MYLEWCVLPY--VYNFISFEFAVLFFLCLIGFSVYTTMISGMVSKSKYGMIGALRASSQSISYEIAFSLYVLTAMIH--- 155
Cdd:COG1005    91 ALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLags 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798 156 FNFFSFVNQ------NLIVLLVIWLPFLVMIIAELNRAPFDFAEGESELVSGFNVEYGSVAFVLLFLSEYGSLIFFAVFM 229
Cdd:COG1005   171 LNLSEIVEAqagglwFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALA 250

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1011057798 230 SMMFFN-------------------FSLVMSFLIFsLFIYIRSSYPRFRYDMMMMMFWFKFLPLSLIFL 279
Cdd:COG1005   251 TTLFLGgwlgpfpilplgglpgilwFLLKTLFFIF-FFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNL 318
 
Name Accession Description Interval E-value
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 4-287 3.98e-115

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 332.63  E-value: 3.98e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798   4 MLLLFMVFILQAIAFITLYERHLLGSSQNRLGPTKVTFMAVLQALLDGVKLLKKEQLLPVLSSDMMFLFIPGLSFVVMYL 83
Cdd:MTH00090    1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798  84 EWCVLPYVYNFISFEFAVLFFLCLIGFSVYTTMISGMVSKSKYGMIGALRASSQSISYEIAFSLYVLTAMIHFNFFSFVN 163
Cdd:MTH00090   81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798 164 QNLIVLLVIWLPFLVMIIAELNRAPFDFAEGESELVSGFNVEYGSVAFVLLFLSEYGSLIFFAVFMSMMFFNFSLVMSFL 243
Cdd:MTH00090  161 SFSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFKFSFLMLFL 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1011057798 244 IFSLFIYIRSSYPRFRYDMMMMMFWFKFLPLSLIFLSFFYVMLI 287
Cdd:MTH00090  241 IFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVLFI 284
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 1-287 3.84e-68

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 213.86  E-value: 3.84e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798   1 MVLMLLLFMVFILQAIAFITLYERHLLGSSQNRLGPTKVTFMAVLQALLDGVKLLKKEQLLPVLSSDMMFLFIPGLSFVV 80
Cdd:MTH00193    4 MLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798  81 MYLEWCVLPYVYNFISFEFAVLFFLCLIGFSVYTTMISGMVSKSKYGMIGALRASSQSISYEIAFSLYVLTAMIHFNFFS 160
Cdd:MTH00193   84 SLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFN 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798 161 FVN----QNLIVLLVIWLP----FLVMIIAELNRAPFDFAEGESELVSGFNVEYGSVAFVLLFLSEYGSLIFFAVFMSMM 232
Cdd:MTH00193  164 LLDfmnyQKYIWFIFFSFPlfliWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVLM 243

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1011057798 233 FFNFSL------VMSFLIFSLFIYIRSSYPRFRYDMMMMMFWFKFLPLSLIFLSFFYVMLI 287
Cdd:MTH00193  244 FLGGDLlsllfyLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKI 304
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 6-286 8.49e-68

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 212.81  E-value: 8.49e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798   6 LLFMVFILQAIAFITLYERHLLGSSQNRLGPTKVTFMAVLQALLDGVKLLKKEQLLPVLSSDMMFLFIPGLSFVVMYLEW 85
Cdd:MTH00143    8 VFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLW 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798  86 CVLPYVYNFISFEFAVLFFLCLIGFSVYTTMISGMVSKSKYGMIGALRASSQSISYEIAFSLYVLTAMIHFNFFSFVN-- 163
Cdd:MTH00143   88 QLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEis 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798 164 --QNLIVLLVIWLPFLVM----IIAELNRAPFDFAEGESELVSGFNVEYGSVAFVLLFLSEYGSLIFFAVFMSMMFFNFS 237
Cdd:MTH00143  168 esQFSVWLGFLMFPVFLMwfvsCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFFGGS 247

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798 238 L-----------VMSFLIFSLFIYIRSSYPRFRYDMMMMMFWFKFLPLSLIFLSFFYVML 286
Cdd:MTH00143  248 SvlfllggvvfmFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILVLFVVLV 307
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 2-276 4.02e-64

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 203.97  E-value: 4.02e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798   2 VLMLLLFMVFILQAIAFITLYERHLLGSSQNRLGPTKVTFMAVLQALLDGVKLLKKEQLLPVLSSDMMFLFIPGLSFVVM 81
Cdd:MTH00111    8 LINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALLLA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798  82 YLEWCVLPYVYNFISFEFAVLFFLCLIGFSVYTTMISGMVSKSKYGMIGALRASSQSISYE-----IAFSLYVLTAMIHF 156
Cdd:MTH00111   88 LTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEvtlgiILLSLILLSGGYTL 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798 157 NFFSFVNQNLIVLLVIWlPFLVM----IIAELNRAPFDFAEGESELVSGFNVEYGSVAFVLLFLSEYGSLIFFAVFMSMM 232
Cdd:MTH00111  168 QTLATTQEPLWLIFSSW-PLAMMwyisTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLTTIL 246

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1011057798 233 FFN----------FSLVM---SFLIFSLFIYIRSSYPRFRYDMMMMMFWFKFLPLSL 276
Cdd:MTH00111  247 FLNpstlnlppelFTINLmtkTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTL 303
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 1-285 7.07e-64

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 203.22  E-value: 7.07e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798   1 MVLMLLLFMVFILQAIAFITLYERHLLGSSQNRLGPTKVTFMAVLQALLDGVKLLKKEQLLPVLSSDMMFLFIPGLSFVV 80
Cdd:MTH00218    4 SLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798  81 MYLEWCVLPYVYNFISFEFAVLFFLCLIGFSVYTTMISGMVSKSKYGMIGALRASSQSISYEIAFSLYVLTAMIHFNFFS 160
Cdd:MTH00218   84 ALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFS 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798 161 ----FVNQNLIVLLVIWLPFLVM----IIAELNRAPFDFAEGESELVSGFNVEYGSVAFVLLFLSEYGSLIFFAVFMSMM 232
Cdd:MTH00218  164 legfNLTQETIWLLIPEWPLALMwfisTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVIL 243

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1011057798 233 FFNFSLVMSFLIF------SLFIYIRSSYPRFRYDMMMMMFWFKFLPLSLIFLSFFYVM 285
Cdd:MTH00218  244 FLGTSLTTINLMLkatllvFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSL 302
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 3-287 3.37e-62

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 198.72  E-value: 3.37e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798   3 LMLLLFMVFILQAIAFITLYERHLLGSSQNRLGPTKVTFMAVLQALLDGVKLLKKEQLLPVLSSDMMFLFIPGLSFVVMY 82
Cdd:MTH00225    5 LKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798  83 LEWCVLPYVYNFISFEFAVLFFLCLIGFSVYTTMISGMVSKSKYGMIGALRASSQSISYEIAFSLYVLTAMI---HFNFF 159
Cdd:MTH00225   85 ILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFlvlTYNLF 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798 160 SFV-NQNLIVLLVIWLPFLVM----IIAELNRAPFDFAEGESELVSGFNVEYGSVAFVLLFLSEYGSLIFFAVFMSMMFF 234
Cdd:MTH00225  165 DFSyNQKYFWFMFVLFPLFFCwmisMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSILFF 244

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1011057798 235 NFSLVMSFLIFSL--------FIYIRSSYPRFRYDMMMMMFWFKFLPLSLIFLSFFYVMLI 287
Cdd:MTH00225  245 GGFFVTIDLFLILkimllafwFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLIILM 305
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 1-287 1.79e-61

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 197.15  E-value: 1.79e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798   1 MVLMLLLFMVFILQAIAFITLYERHLLGSSQNRLGPTKVTFMAVLQALLDGVKLLKKEQLLPVLSSDMMFLFIPGLSFVV 80
Cdd:MTH00071    7 LIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMALTL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798  81 MYLEWCVLPYVYNFISFEFAVLFFLCLIGFSVYTTMISGMVSKSKYGMIGALRASSQSISYEIAFSLYVLTAMIHFNFFS 160
Cdd:MTH00071   87 ALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGGFS 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798 161 FVN----QNLIVLLVIWLPFLVM----IIAELNRAPFDFAEGESELVSGFNVEYGSVAFVLLFLSEYGSLIFFAVFMSMM 232
Cdd:MTH00071  167 LMNfnttQEFMWLIIPAWPMAAMwfisTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLSTIL 246

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1011057798 233 FFN------------FSLVMSFLIFS-LFIYIRSSYPRFRYDMMMMMFWFKFLPLSLIFLSFFYVMLI 287
Cdd:MTH00071  247 FLGstynhlqpelstMNLMIKASILSmLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPI 314
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 6-276 4.72e-61

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 196.37  E-value: 4.72e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798   6 LLFMVFILQAIAFITLYERHLLGSSQNRLGPTKVTFMAVLQALLDGVKLLKKEQLLPVLSSDMMFLFIPGLSFVVMYLEW 85
Cdd:MTH00134   13 LAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALTLALTLW 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798  86 CVLPYVYNFISFEFAVLFFLCLIGFSVYTTMISGMVSKSKYGMIGALRASSQSISYEIAFSLYVLTAMIH---FNFFSF- 161
Cdd:MTH00134   93 APMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFtggFTLQTFn 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798 162 VNQNLIVLLVIWLPFLVM----IIAELNRAPFDFAEGESELVSGFNVEYGSVAFVLLFLSEYGSLIFFAVFMSMMFFNFS 237
Cdd:MTH00134  173 TAQESIWLLLPAWPLAAMwyisTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLGAS 252

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1011057798 238 LVMSF-------------LIFSLFIYIRSSYPRFRYDMMMMMFWFKFLPLSL 276
Cdd:MTH00134  253 HIPTLpelttinlmtkaaLLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTL 304
NADHdh pfam00146
NADH dehydrogenase;
4-279 1.61e-60

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 194.23  E-value: 1.61e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798   4 MLLLFMVFILQAIAFITLYERHLLGSSQNRLGPTKVTFMAVLQALLDGVKLLKKEQLLPVLSSDMMFLFIPGLSFVVMYL 83
Cdd:pfam00146   1 KILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798  84 EWCVLPYVYNFI--SFEFAVLFFLCLIGFSVYTTMISGMVSKSKYGMIGALRASSQSISYEIAFSLYVLTAMIH---FNF 158
Cdd:pfam00146  81 AFAVIPFGPGLVlaDLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLagsLSL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798 159 FSFVNQ-----NLIVLLVIWLPFLVMIIAELNRAPFDFAEGESELVSGFNVEYGSVAFVLLFLSEYGSLIFFAVFMSMMF 233
Cdd:pfam00146 161 SEIVEAqaggwFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLF 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1011057798 234 FN------------FSLVMSFLIFSLFIYIRSSYPRFRYDMMMMMFWFKFLPLSLIFL 279
Cdd:pfam00146 241 LGgwlgpfplpgllWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANL 298
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 5-287 1.41e-59

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 192.15  E-value: 1.41e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798   5 LLLFMVFILQAIAFITLYERHLLGSSQNRLGPTKVTFMAVLQALLDGVKLLKKEQLLPVLSSDMMFLFIPGLSFVVMYLE 84
Cdd:MTH00104    6 ILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLALTM 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798  85 WCVLPYVYNFISFEFAVLFFLCLIGFSVYTTMISGMVSKSKYGMIGALRASSQSISYEIAFSLYVLTAMI---HFNFFSF 161
Cdd:MTH00104   86 WIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLmngSFTLSTL 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798 162 V--NQNLIVLLVIWlPFLVM----IIAELNRAPFDFAEGESELVSGFNVEYGSVAFVLLFLSEYGSLIFFAVFMSMMFF- 234
Cdd:MTH00104  166 IttQEHLWLIFPSW-PLAMMwfisTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTILFLg 244

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1011057798 235 -------------NFSLvMSFLIFSLFIYIRSSYPRFRYDMMMMMFWFKFLPLSLIFLSFFYVMLI 287
Cdd:MTH00104  245 afhnpympelyttNFTI-KTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPI 309
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 2-287 1.94e-59

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 191.49  E-value: 1.94e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798   2 VLMLLLFMVFILQAIAFITLYERHLLGSSQNRLGPTKVTFMAVLQALLDGVKLLKKEQLLPVLSSDMMFLFIPGLSFVVM 81
Cdd:MTH00195    5 VIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798  82 YLEWCVLPYVYNFISFEFAVLFFLCLIGFSVYTTMISGMVSKSKYGMIGALRASSQSISYEIAFSLYVLTAMIHFNFFSF 161
Cdd:MTH00195   85 LILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDF 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798 162 ----VNQNLI-VLLVIW---LPFLVMIIAELNRAPFDFAEGESELVSGFNVEYGSVAFVLLFLSEYGSLIFFAVFMSMMF 233
Cdd:MTH00195  165 timvISQGFSwVILLCPpisFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILF 244

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1011057798 234 FNFSLVMSFLIFSL-----FIYIRSSYPRFRYDMMMMMFWFKFLPLSLIFLSFFYVMLI 287
Cdd:MTH00195  245 LGGGGTIIVALKSLflsfcFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPF 303
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 1-287 2.89e-56

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 184.02  E-value: 2.89e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798   1 MVLMLLLFMVFILQAIAFITLYERHLLGSSQNRLGPTKVTFMAVLQALLDGVKLLKKEQLLPVLSSDMMFLFIPGLSFVV 80
Cdd:MTH00040    6 FLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLFL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798  81 MYLEWCVLPYVYNFISFEFAVLFFLCLIGFSVYTTMISGMVSKSKYGMIGALRASSQSISYEIAFSLYVLTAMI---HFN 157
Cdd:MTH00040   86 ALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIfsgSFS 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798 158 FFSFVN-QNLIVLLVIWLPFLVM----IIAELNRAPFDFAEGESELVSGFNVEYGSVAFVLLFLSEYGSLIFFAVFMSMM 232
Cdd:MTH00040  166 LSSISNsQNGSWLLFPCLPLFYIwfisTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVIL 245

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798 233 FFNFSLVMS---------------FLIFsLFIYIRSSYPRFRYDMMMMMFWFKFLPLSLIFLSFFYVMLI 287
Cdd:MTH00040  246 FLGGGSPFNeifpiniiivgikttFLVF-LFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLS 314
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-279 1.46e-55

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 182.25  E-value: 1.46e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798   1 MVLMLLLFMVFILQAIAFITLYERHLLGSSQNRLGPTKVTFMAVLQALLDGVKLLKKEQLLPVLSSDMMFLFIPGLSFVV 80
Cdd:COG1005    11 TLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIP 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798  81 MYLEWCVLPY--VYNFISFEFAVLFFLCLIGFSVYTTMISGMVSKSKYGMIGALRASSQSISYEIAFSLYVLTAMIH--- 155
Cdd:COG1005    91 ALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLags 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798 156 FNFFSFVNQ------NLIVLLVIWLPFLVMIIAELNRAPFDFAEGESELVSGFNVEYGSVAFVLLFLSEYGSLIFFAVFM 229
Cdd:COG1005   171 LNLSEIVEAqagglwFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALA 250

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1011057798 230 SMMFFN-------------------FSLVMSFLIFsLFIYIRSSYPRFRYDMMMMMFWFKFLPLSLIFL 279
Cdd:COG1005   251 TTLFLGgwlgpfpilplgglpgilwFLLKTLFFIF-FFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNL 318
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 5-282 9.67e-52

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 171.89  E-value: 9.67e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798   5 LLLFMVFILQAIAFITLYERHLLGSSQNRLGPTKVTFMAVLQALLDGVKLLKKEQLLPVLSSDMMFLFIPGLSFVVMYLE 84
Cdd:MTH00010    9 ILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILALLL 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798  85 WCVLPYVYNFISFEFAVLFFLCLIGFSVYTTMISGMVSKSKYGMIGALRASSQSISYEIAFSLYVLTAMIHFNFFSF--- 161
Cdd:MTH00010   89 WSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSFski 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798 162 -VNQNLIVLLVIWLPFLVMII---AELNRAPFDFAEGESELVSGFNVEYGSVAFVLLFLSEYGSLIFFAVFMSMMFFNFS 237
Cdd:MTH00010  169 iMSQYSWILLMIIPLTVSWFItnlAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVFFTSFI 248

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1011057798 238 ----------LVMSFLIFSLFIYIRSSYPRFRYDMMMMMFWFKFLPLSLIFLSFF 282
Cdd:MTH00010  249 psifisdlmlILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMIS 303
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 2-281 2.72e-50

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 168.37  E-value: 2.72e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798   2 VLMLLLFMVFILQAIAFITLYERHLLGSSQNRLGPTKVTFMAVLQALLDGVKLLKKEQLLPVLSSDMMFLFIPGLSFVVM 81
Cdd:MTH00216    9 LIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTLA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798  82 YLEWCVLPYVYNFISFEF--AVLFFLCLIGFSVYTTMISGMVSKSKYGMIGALRASSQSISYEIAFSLYVLTAMI---HF 156
Cdd:MTH00216   89 LIVWGVIPYERGVLISDFkiGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLcvgSL 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798 157 NFFSFVNQN------LIVLLVIWLPFLVMIIAELNRAPFDFAEGESELVSGFNVEYGSVAFVLLFLSEYGSLIFFAVFMS 230
Cdd:MTH00216  169 SITEIVLAQnngiwfFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLTT 248

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1011057798 231 MMFFN---------------FSLVMSFLIFsLFIYIRSSYPRFRYDMMMMMFWFKFLPLSLIFLSF 281
Cdd:MTH00216  249 ILFLGgwlspikyfkggagwFGLKVVFIIF-LFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIF 313
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-277 8.35e-49

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 164.59  E-value: 8.35e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798   1 MVLMLLLFMVFILQAIAFITLYERHLLGSSQNRLGPTKVTFMAVLQALLDGVKLLKKEQLLPVLSSDMMFLFIPGLSFVV 80
Cdd:PRK06076   12 ILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIP 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798  81 MYLEWCVLPY--VYNFISFEFAVLFFLCLIGFSVYTTMISGMVSKSKYGMIGALRASSQSISYEIAFSLYVLTAMIH--- 155
Cdd:PRK06076   92 AFLAWAVIPFgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLags 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798 156 FNFFSFVNQNLIVLLVIWLP-----FLVMIIAELNRAPFDFAEGESELVSGFNVEYGSVAFVLLFLSEYGSLIFFAVFMS 230
Cdd:PRK06076  172 LNLSDIVEAQFLSWNIIPQPpafvvFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALIT 251

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1011057798 231 MMFFN-----------------FSLVMSFLIFsLFIYIRSSYPRFRYDMMMMMFWFKFLPLSLI 277
Cdd:PRK06076  252 TLFLGgwlppfplgggipgaiwFVLKVAFFVF-LFIWLRATLPRYRYDQLMRLGWKVLLPLSLV 314
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 2-287 5.88e-48

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 162.59  E-value: 5.88e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798   2 VLMLLLFMVFILQAIAFITLYERHLLGSSQNRLGPTKVTFMAVLQALLDGVKLLKKEQLLPVLSSDMMFLFIPGLSFVVM 81
Cdd:MTH00054    5 IIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798  82 YLEWCVLPYVYNFI--SFEFAVLFFLCLIGFSVYTTMISGMVSKSKYGMIGALRASSQSISYEIAFSLYVLTAMIHFNFF 159
Cdd:MTH00054   85 FIAWGVIPYGEGVVlsDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSL 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798 160 SFVN----QNLIVLLVIWLP----FLVMIIAELNRAPFDFAEGESELVSGFNVEYGSVAFVLLFLSEYGSLIFFAVFMSM 231
Cdd:MTH00054  165 NLTEivlaQKNIWFIFPLFPaaimFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVI 244

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1011057798 232 MFFN-----------------FSLVMSFLIFsLFIYIRSSYPRFRYDMMMMMFWFKFLPLSLIFLSFFYVMLI 287
Cdd:MTH00054  245 LFLGgwlvisgptsyfsnfvwFGIKIALIIF-LFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILI 316
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 1-276 1.34e-42

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 149.01  E-value: 1.34e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798   1 MVLMLLLFMVFILQAIAFITLYERHLLGSSQNRLGPTKVTFMAVLQALLDGVKLLKKEQLLPVLSSDMMFLFIPGLSFVV 80
Cdd:MTH00029    9 VTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTL 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798  81 MYLEWCVLPYVYNFI--SFEFAVLFFLCLIGFSVYTTMISGMVSKSKYGMIGALRASSQSISYEIAFSLYVLTAMIHFNF 158
Cdd:MTH00029   89 AILAWAIVTMDQGVFlsDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGS 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798 159 FSF----VNQNLIVLLVIWLP----FLVMIIAELNRAPFDFAEGESELVSGFNVEYGSVAFVLLFLSEYGSLIFFAVFMS 230
Cdd:MTH00029  169 LNIseivISQRSVWLIIPLFPaaimFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMT 248

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1011057798 231 MMFFN----------------------FSLVMSFLIFS-------LFIYIRSSYPRFRYDMMMMMFWFKFLPLSL 276
Cdd:MTH00029  249 IFFLGgwlspldgiptppeafsifeqiASSKSSFWFFTkssifilFFIWSRASFPRIRYDQLMKLLWKTYLPLSL 323
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 6-283 5.58e-31

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 116.95  E-value: 5.58e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798   6 LLFMVFILQAIAFITLYERHLLGSSQNRLGPTKVTFMAVLQALLDGVKLLKKEQLLPVLSSDMMFLFIPGLSFVVMYLEW 85
Cdd:MTH00058    8 LEGLLIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYC 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798  86 CVLPYVYNFISFEFAVLFFLCLIGFSVYTTMISGMVSKSKYGMIGALRASSQSISYEIAFSLYVLTAMIHFNFFSFVN-- 163
Cdd:MTH00058   88 FIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDfy 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798 164 ----QNLIVLLVIWLPFLVMIIAELNRAPFDFAEGESELVSGFNVEYGSVAFVLLFLSEYGSLIFFAVFMSMMFFNFSLV 239
Cdd:MTH00058  168 ysgwLSVLLFPLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFGGGFV 247

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1011057798 240 MSFLIFSL--FIYIRSSYPRFRYDMMMMMFWFKFLPLSLIFLSFFY 283
Cdd:MTH00058  248 SIMLLFHLlfFMWARATLPRVRYDYFVNFFWEYCLVLLILSLFVIV 293
ndhA CHL00032
NADH dehydrogenase subunit 1
 1-276 9.08e-23

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 96.17  E-value: 9.08e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798   1 MVLMLLLFMVFILQAIAFITLYERHLLGSSQNRLGPTKVTFMAVLQALLDGVKLLKKEQLLPVLSSDMMFLFIPGLSFVV 80
Cdd:CHL00032   29 ILVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVIS 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798  81 MYLEWCVLPYVYNFISFEFAVLFFLCLIGFSVYTT--MISGMVSKSKYGMIGALRASSQSISYEIAFSLYVLTAMIHFNF 158
Cdd:CHL00032  109 ILLSYLVIPFGYHLVLADLSIGVFLWIAISSIAPIglLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNS 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798 159 FS------------FVNQNLIVLLVIWLPFLVMIIAELNRAPFDFAEGESELVSGFNVEYGSVAFVLLFLSEYGSLIFFA 226
Cdd:CHL00032  189 LStvdiveaqskygFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSS 268

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798 227 VFMSMMFF---NFS----------------------------LVMSFLIFSLFIYIRSSYPRFRYDMMMMMFWFKFLPLS 275
Cdd:CHL00032  269 LFVTVLYLggwNLSipyifipelfeinktggvfgttigifitLAKTYLFLFISITTRWTLPRLRMDQLLNLGWKFLLPIS 348


                  .
gi 1011057798 276 L 276
Cdd:CHL00032  349 L 349
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
31-284 1.24e-15

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 75.22  E-value: 1.24e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798  31 QNRLGPtkvtfmAVLQALLDGVKLLKKEQLLPVLSSdMMFLFIPGLSFVVMYLEWCVLPYVYNFISFEFA--VLFFLCLI 108
Cdd:COG0650    33 QGRRGP------PILQPYYDLLKLLRKETVVPETAS-WLFRAAPYVALAAMLLAALLVPVLTTGPPLSFSgdLIVLVYLL 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798 109 GFSVYTTMISGMVSKSKYGMIGALRASSQSISYEIAFSLYVLTAMIH---FNFFSFVNQNLIVLLVIWLP--------FL 177
Cdd:COG0650   106 ALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLagsTSLSDIVAYQAAHGPLLLSPslllaaiaFF 185

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011057798 178 VMIIAELNRAPFDFAEGESELVSGFNVEYGSVAFVLLFLSEYGSLIFFAVFMSMMFFNFSLVMS------------FLIF 245
Cdd:COG0650   186 IVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLLSLFVNLFLPWGIALTlllalllfllklLVLA 265

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1011057798 246 SLFIYIRSSYPRFRYDMMMMMFWFKFLpLSLIFLSFFYV 284
Cdd:COG0650   266 VLLAVIEASTARLRLFRVPDFLWTAFL-LALLALLLAVL 303
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH