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Conserved domains on  [gi|1150150754|ref|YP_009349764|]
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cytochrome b (mitochondrion) [Decma fissa]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 713.86  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  12 FKIANSALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTIHANGASFF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  92 FICLYLHVGRGMYYGSYNYIHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFSV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 172 DNATLTRFFTFHFVLPFIVAAAVMVHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIMMVASLIFLSLLEPYLL 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 252 GDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNSNSFRGIQFYPINQILFWSMTT 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1150150754 332 IVILLTWIGARPVEDPYILTGQILTVLYFAYYLINP 367
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 713.86  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  12 FKIANSALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTIHANGASFF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  92 FICLYLHVGRGMYYGSYNYIHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFSV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 172 DNATLTRFFTFHFVLPFIVAAAVMVHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIMMVASLIFLSLLEPYLL 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 252 GDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNSNSFRGIQFYPINQILFWSMTT 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1150150754 332 IVILLTWIGARPVEDPYILTGQILTVLYFAYYLINP 367
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
23-365 3.77e-125

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 366.04  E-value: 3.77e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  23 PAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTIHANGASFFFICLYLHVGRG 102
Cdd:COG1290    31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 103 MYYGSYNYIH--TWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFSVDNATLTRFF 180
Cdd:COG1290   111 FFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFF 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 181 TFH-FVLPFIVAAAVMVHLLFLHQTGSNNPLG----LNSDVDKIPFHPYFSFKDVFGFIMMVASLIFLSLLEPylLGDPD 255
Cdd:COG1290   191 ALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP--INPPP 268

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 256 NFTPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGVIALVMSIAILMILPFYNSNSFRGIQFYPINQILFWSMTTIV 333
Cdd:COG1290   269 NYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFF 348

                         330       340       350
                  ....*....|....*....|....*....|..
gi 1150150754 334 ILLTWIGARPveDPYILTGQILTVLYFAYYLI 365
Cdd:COG1290   349 IVLTILGANP--PIATLLGSINTVTYFAFFLI 378
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 3.51e-89

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 267.31  E-value: 3.51e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  10 PLFKIANSALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTIHANGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  90 FFFICLYLHVGRGMYYGSYN--YIHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1150150754 168 GFSVDNATLTRFFTFHFVLPFIVAAAVMVHLLFLHQTGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 1.04e-81

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 247.68  E-value: 1.04e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  19 LVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTIHANGASFFFICLYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  99 VGRGMYYGSYNYIH--TWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFSVDNATL 176
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1150150754 177 TRFFTFHFVLPFIVAAAVMVHLLFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 237-341 1.03e-12

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 65.59  E-value: 1.03e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 237 VASLIFLSLLEPYLLGDPdnftpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFY-NSNSFRG 315
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQN 122

                          90       100
                  ....*....|....*....|....*.
gi 1150150754 316 IQFYPINQILFWsMTTIVILLTWIGA 341
Cdd:TIGR01156 123 PFRRPVATTVFL-FGTVVALWLGIGA 147
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 713.86  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  12 FKIANSALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTIHANGASFF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  92 FICLYLHVGRGMYYGSYNYIHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFSV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 172 DNATLTRFFTFHFVLPFIVAAAVMVHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIMMVASLIFLSLLEPYLL 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 252 GDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNSNSFRGIQFYPINQILFWSMTT 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1150150754 332 IVILLTWIGARPVEDPYILTGQILTVLYFAYYLINP 367
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 645.42  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754   1 MNKPIRTSHPLFKIANSALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFL 80
Cdd:MTH00145    1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  81 RTIHANGASFFFICLYLHVGRGMYYGSYNYIHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTD 160
Cdd:MTH00145   81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 161 LVQWVWGGFSVDNATLTRFFTFHFVLPFIVAAAVMVHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIMMVASL 240
Cdd:MTH00145  161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 241 IFLSLLEPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNSNSFRGIQFYP 320
Cdd:MTH00145  241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1150150754 321 INQILFWSMTTIVILLTWIGARPVEDPYILTGQILTVLYFAYYLINPFILMMWDNLV 377
Cdd:MTH00145  321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNIL 377
CYTB MTH00131
cytochrome b; Provisional
 5-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 634.38  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754   5 IRTSHPLFKIANSALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTIH 84
Cdd:MTH00131    4 LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLH 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  85 ANGASFFFICLYLHVGRGMYYGSYNYIHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 164
Cdd:MTH00131   84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 165 VWGGFSVDNATLTRFFTFHFVLPFIVAAAVMVHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIMMVASLIFLS 244
Cdd:MTH00131  164 IWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLA 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 245 LLEPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNSNSFRGIQFYPINQI 324
Cdd:MTH00131  244 LFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQF 323

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1150150754 325 LFWSMTTIVILLTWIGARPVEDPYILTGQILTVLYFAYYLI 365
Cdd:MTH00131  324 LFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLV 364
CYTB MTH00119
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 624.62  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754   1 MNKPIRTSHPLFKIANSALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFL 80
Cdd:MTH00119    1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  81 RTIHANGASFFFICLYLHVGRGMYYGSYNYIHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTD 160
Cdd:MTH00119   81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 161 LVQWVWGGFSVDNATLTRFFTFHFVLPFIVAAAVMVHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIMMVASL 240
Cdd:MTH00119  161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 241 IFLSLLEPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNSNSFRGIQFYP 320
Cdd:MTH00119  241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1150150754 321 INQILFWSMTTIVILLTWIGARPVEDPYILTGQILTVLYFAYYLI-NPFILMMWDNLVN 378
Cdd:MTH00119  321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLIlFPLLGALENKMLN 379
CYTB MTH00074
cytochrome b; Provisional
 1-375 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 622.86  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754   1 MNKPIRTSHPLFKIANSALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFL 80
Cdd:MTH00074    1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  81 RTIHANGASFFFICLYLHVGRGMYYGSYNYIHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTD 160
Cdd:MTH00074   81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 161 LVQWVWGGFSVDNATLTRFFTFHFVLPFIVAAAVMVHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIMMVASL 240
Cdd:MTH00074  161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 241 IFLSLLEPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNSNSFRGIQFYP 320
Cdd:MTH00074  241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1150150754 321 INQILFWSMTTIVILLTWIGARPVEDPYILTGQILTVLYFAYYLINPFILMMWDN 375
Cdd:MTH00074  321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLEN 375
CYTB MTH00016
cytochrome b; Validated
 1-376 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 620.54  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754   1 MNKPIRTSHPLFKIANSALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFL 80
Cdd:MTH00016    1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  81 RTIHANGASFFFICLYLHVGRGMYYGSYNYIHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTD 160
Cdd:MTH00016   81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 161 LVQWVWGGFSVDNATLTRFFTFHFVLPFIVAAAVMVHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIMMVASL 240
Cdd:MTH00016  161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 241 IFLSLLEPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNSNSFRGIQFYP 320
Cdd:MTH00016  241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1150150754 321 INQILFWSMTTIVILLTWIGARPVEDPYILTGQILTVLYFAYYLINPFILMMWDNL 376
Cdd:MTH00016  321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKL 376
CYTB MTH00191
cytochrome b; Provisional
 5-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 619.62  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754   5 IRTSHPLFKIANSALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTIH 84
Cdd:MTH00191    1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  85 ANGASFFFICLYLHVGRGMYYGSYNYIHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 164
Cdd:MTH00191   81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 165 VWGGFSVDNATLTRFFTFHFVLPFIVAAAVMVHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIMMVASLIFLS 244
Cdd:MTH00191  161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 245 LLEPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNSNSFRGIQFYPINQI 324
Cdd:MTH00191  241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1150150754 325 LFWSMTTIVILLTWIGARPVEDPYILTGQILTVLYFAYYLI 365
Cdd:MTH00191  321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00100
cytochrome b; Provisional
 4-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 611.26  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754   4 PIRTSHPLFKIANSALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTI 83
Cdd:MTH00100    3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  84 HANGASFFFICLYLHVGRGMYYGSYNYIHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQ 163
Cdd:MTH00100   83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 164 WVWGGFSVDNATLTRFFTFHFVLPFIVAAAVMVHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIMMVASLIFL 243
Cdd:MTH00100  163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 244 SLLEPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNSNSFRGIQFYPINQ 323
Cdd:MTH00100  243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQ 322

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1150150754 324 ILFWSMTTIVILLTWIGARPVEDPYILTGQILTVLYFAYYLI 365
Cdd:MTH00100  323 CLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILI 364
CYTB MTH00034
cytochrome b; Validated
 4-369 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 578.58  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754   4 PIRTSHPLFKIANSALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTI 83
Cdd:MTH00034    3 PLRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNI 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  84 HANGASFFFICLYLHVGRGMYYGSYNYIHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQ 163
Cdd:MTH00034   83 HANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQ 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 164 WVWGGFSVDNATLTRFFTFHFVLPFIVAAAVMVHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIMMVASLIFL 243
Cdd:MTH00034  163 WIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 244 SLLEPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNSNSFRGIQFYPINQ 323
Cdd:MTH00034  243 ALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQ 322

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1150150754 324 ILFWSMTTIVILLTWIGARPVEDPYILTGQILTVLYFAYYLI-NPFI 369
Cdd:MTH00034  323 IAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFfFPLI 369
CYTB MTH00224
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 530.65  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754   1 MNKPIRTSHPLFKIANSALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFL 80
Cdd:MTH00224    1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  81 RTIHANGASFFFICLYLHVGRGMYYGSYNYIHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTD 160
Cdd:MTH00224   81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 161 LVQWVWGGFSVDNATLTRFFTFHFVLPFIVAAAVMVHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIMMVASL 240
Cdd:MTH00224  161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 241 IFLSLLEPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNSNSFRGIQFYP 320
Cdd:MTH00224  241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1150150754 321 INQILFWSMTTIVILLTWIGARPVEDPYILTGQILTVLYFAYYLINPFILMMWDNLVN 378
Cdd:MTH00224  321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLLN 378
CYTB MTH00022
cytochrome b; Validated
 4-365 0e+00

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 509.24  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754   4 PIRTSHPLFKIANSALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTI 83
Cdd:MTH00022    2 PLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  84 HANGASFFFICLYLHVGRGMYYGSYNYIHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQ 163
Cdd:MTH00022   82 HANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQ 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 164 WVWGGFSVDNATLTRFFTFHFVLPFIVAAAVMVHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIMMVASLIFL 243
Cdd:MTH00022  162 WVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFI 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 244 SLLEPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNSNSFRGIQFYPINQ 323
Cdd:MTH00022  242 VYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGR 321

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1150150754 324 ILFWSMTTIVILLTWIGARPVEDPYILTGQILTVLYFAYYLI 365
Cdd:MTH00022  322 MAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLV 363
CYTB MTH00053
cytochrome b; Provisional
 1-365 2.08e-180

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 505.78  E-value: 2.08e-180
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754   1 MNKPIRTSHPLFKIANSALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFL 80
Cdd:MTH00053    1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  81 RTIHANGASFFFICLYLHVGRGMYYGSYNYIHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTD 160
Cdd:MTH00053   81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 161 LVQWVWGGFSVDNATLTRFFTFHFVLPFIVAAAVMVHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIMMVASL 240
Cdd:MTH00053  161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 241 IFLSLLEPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNSNSFRGIQFYP 320
Cdd:MTH00053  241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1150150754 321 INQILFWSMTTIVILLTWIGARPVEDPYILTGQILTVLYFAYYLI 365
Cdd:MTH00053  321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLI 365
CYTB MTH00033
cytochrome b; Provisional
 19-365 1.22e-135

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 392.38  E-value: 1.22e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  19 LVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTIHANGASFFFICLYLH 98
Cdd:MTH00033   15 IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCH 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  99 VGRGMYYGSYNYIHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFSVDNATLTR 178
Cdd:MTH00033   95 IGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNR 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 179 FFTFHFVLPFIVAAAVMVHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIMMVASLIFLSlLEPY---LLGDPD 255
Cdd:MTH00033  175 FFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIG-IEPRietLLQDPE 253

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 256 NFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNSNSFRGIQFYPINQILFWSMTTIVIL 335
Cdd:MTH00033  254 NFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFII 333

                         330       340       350
                  ....*....|....*....|....*....|.
gi 1150150754 336 LTWIGARPV-EDPYILTGQILTVLYFAYYLI 365
Cdd:MTH00033  334 LTWIGSAPAgADPYVLIGRIATIFYFGYFLV 364
CYTB MTH00086
cytochrome b; Provisional
 16-371 2.53e-128

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 372.74  E-value: 2.53e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  16 NSALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTIHANGASFFFICL 95
Cdd:MTH00086    4 NSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  96 YLHVGRGMYYGSYNYIHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFSVDNAT 175
Cdd:MTH00086   84 YLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSAT 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 176 LTRFFTFHFVLPFIVAAAVMVHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIMMVAsLIFLSLLEPYLLGDPD 255
Cdd:MTH00086  164 LKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLV-FIIFSLFYPFNLGDPE 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 256 NFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNSnsfRGIQFYPINQILFWSMTTIVIL 335
Cdd:MTH00086  243 MFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNN---YTSCLNKLNKFLVFSFIVVNVI 319

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1150150754 336 LTWIGARPVEDPYILTGQILTVLYFAYYLINPFILM 371
Cdd:MTH00086  320 LSWLGQCLVEYPFLFLSQIFSFIYFFLILLMLFLFY 355
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
23-365 3.77e-125

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 366.04  E-value: 3.77e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  23 PAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTIHANGASFFFICLYLHVGRG 102
Cdd:COG1290    31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 103 MYYGSYNYIH--TWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFSVDNATLTRFF 180
Cdd:COG1290   111 FFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFF 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 181 TFH-FVLPFIVAAAVMVHLLFLHQTGSNNPLG----LNSDVDKIPFHPYFSFKDVFGFIMMVASLIFLSLLEPylLGDPD 255
Cdd:COG1290   191 ALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP--INPPP 268

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 256 NFTPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGVIALVMSIAILMILPFYNSNSFRGIQFYPINQILFWSMTTIV 333
Cdd:COG1290   269 NYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFF 348

                         330       340       350
                  ....*....|....*....|....*....|..
gi 1150150754 334 ILLTWIGARPveDPYILTGQILTVLYFAYYLI 365
Cdd:COG1290   349 IVLTILGANP--PIATLLGSINTVTYFAFFLI 378
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 3.51e-89

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 267.31  E-value: 3.51e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  10 PLFKIANSALVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTIHANGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  90 FFFICLYLHVGRGMYYGSYN--YIHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1150150754 168 GFSVDNATLTRFFTFHFVLPFIVAAAVMVHLLFLHQTGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 19-358 1.65e-86

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 266.08  E-value: 1.65e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  19 LVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTIHANGASFFFICLYLH 98
Cdd:MTH00046    9 LIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIH 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  99 VGRGMYYGSYNYIHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFSVDNATLTR 178
Cdd:MTH00046   89 MGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVR 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 179 FFTFHFVLPFIVAAAVMVHLLFLHQTGSNNPLGL-NSDVDKIPFHPYFSFKDVFGFIMMVASLIFLSLLEPYLLGDPDNF 257
Cdd:MTH00046  169 VFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAY 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 258 TPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIaLVMSIAILMILPFYNSNSFRGIqfypINQILFWSMTTIVILLT 337
Cdd:MTH00046  249 LEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLIVSLFFSLS 323

                         330       340
                  ....*....|....*....|.
gi 1150150754 338 WIGARPVEDPYILTGQILTVL 358
Cdd:MTH00046  324 YLGGCHPEYPYLLISQLFSVL 344
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 1.04e-81

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 247.68  E-value: 1.04e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  19 LVDLPAPSNISAWWNFGSLLGLCLIIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTIHANGASFFFICLYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  99 VGRGMYYGSYNYIH--TWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFSVDNATL 176
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1150150754 177 TRFFTFHFVLPFIVAAAVMVHLLFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-254 1.51e-48

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 161.64  E-value: 1.51e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  89 SFFFICLYLHVGRGMYYGSYNYIH--TWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 167 GGFSVDNATLTRFFTFHF-VLPFIVAAAVMVHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIMMVASLIFLSL 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1150150754 246 LEPYLLGDP 254
Cdd:pfam13631 161 INPIWLGGP 169
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-354 2.97e-47

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 157.81  E-value: 2.97e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 208 NPLGLNSDVDKIPFHPYFSFKDVFGFIMMVASLIFLSLLEPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPN 287
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1150150754 288 KLGGVIALVMSIAILMILPFYNSNSFRGiQFYPINQILFWSMTTIVILLTWIGARPVEDPYILTGQI 354
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-359 6.56e-41

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 139.54  E-value: 6.56e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 259 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNSNSFRGIQFYPINQILFWSMTTIVILLTW 338
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1150150754 339 IGARPVEDPYILTGQILTVLY 359
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 34-210 3.85e-39

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 139.08  E-value: 3.85e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  34 FGSLLGLCLIIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTIHANGASFFFICLYLHVGRGMYYGSYNYIH- 112
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 113 -TWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFSVDNATLTRFFTFH-FVLPFIV 190
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170       180
                  ....*....|....*....|
gi 1150150754 191 AAAVMVHLLFLHQTGSNNPL 210
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 25-210 6.12e-35

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 127.91  E-value: 6.12e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754  25 PSNISAWWNFGSLLGLCLIIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTIHANGASFFFICLYLHVGRGMY 104
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 105 YGSYNYIH--TWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFSVDNATLTRFFTF 182
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*....
gi 1150150754 183 H-FVLPFIVAAAVMVHLLFLHQTGSNNPL 210
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 230-350 2.06e-14

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 70.21  E-value: 2.06e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 230 VFGFIMM--VASLIFLSLLEPYLLGDPdnftpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPF 307
Cdd:COG5679    40 IFPVVILgtIALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPF 114

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1150150754 308 Y-NSNSFRGIQFYPINQILFwSMTTIVILLTWIGAR-PVEDPYIL 350
Cdd:COG5679   115 IeNVNKFQNPFRRPVATAVF-LFGTLVTLWLGIGAAlPIDKSLTL 158
petD CHL00058
cytochrome b6/f complex subunit IV
 237-341 4.70e-14

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 69.26  E-value: 4.70e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 237 VASLIFLSLLEPYLLGDPdnftpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFY-NSNSFRG 315
Cdd:CHL00058   48 IACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQN 122

                          90       100
                  ....*....|....*....|....*.
gi 1150150754 316 IQFYPINQILFWSMTTIVILLTwIGA 341
Cdd:CHL00058  123 PFRRPVATTVFLIGTAVALWLG-IGA 147
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 237-341 1.03e-12

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 65.59  E-value: 1.03e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150754 237 VASLIFLSLLEPYLLGDPdnftpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFY-NSNSFRG 315
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQN 122

                          90       100
                  ....*....|....*....|....*.
gi 1150150754 316 IQFYPINQILFWsMTTIVILLTWIGA 341
Cdd:TIGR01156 123 PFRRPVATTVFL-FGTVVALWLGIGA 147
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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