|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
1.02e-153 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 435.43 E-value: 1.02e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 1 MNPITLLLIMATVFTGTTLTVASSHWLLMWIGLEINMLAVIPILMKNHKPRSTEAATKYFLTQATASMLLMFTIVLNATN 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 81 SGQWNITTTHSQFTSLTITIALTMKMGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQIHPWTNTNILLLIALL 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLSIYLALTIIMFTTLNLNTSTTTLTLSNLWNKTPVI 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 241 TLTTMVTLLSLGGLPPLTGFLPKWMIIQDLSKNNNTIMATIMAIMALLNLYFYMRLIYSTSLTLFPTFNNTKMKWQLQIT 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330 340
....*....|....*....|....*..
gi 1197511388 321 NQTRLMPPLIILSTLSLPLAPTFSTLY 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-268 |
4.27e-18 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 83.13 E-value: 4.27e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 23 SSHWLLMWIGLEINMLAVIP-ILMKNHKPRSTEAATKYFLTQATASMLLMFTIVLNATNSGQWNITTTHSQFT------- 94
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTgglnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 95 ----SLTITIALTMKMGMTPFHFWVPEVTQGISLMAGMLLL-TWQKLAPISIM-----LQIHPWTNTNILLLIALLSILV 164
Cdd:pfam00361 81 llllFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIrrsllYLPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 165 GGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLSIYL-------ALTIIMFTTLNLNTSTTTLTLSN--LWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLlthglfsAGLFLCAGSVIYRRVHTRNIRDYggLAK 240
|
250 260 270
....*....|....*....|....*....|...
gi 1197511388 236 KTPVITLTTMVTLLSLGGLPPLTGFLPKWMIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
6-298 |
1.74e-15 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 77.08 E-value: 1.74e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 6 LLLIMATVftGTTLTVASSHWLLMWIGLEINMLAV-IPILMKNHKPRSTEAATKYFLTQATASMLLMFTIVLNATNSGQW 84
Cdd:COG1007 106 ALLLFATL--GMMLMASANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSL 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 85 NITT-----THSQFTSLTITIALTM-------KMGMTPFHFWVPEVTQG-----------ISLMAGMLLLTwqKLAPISI 141
Cdd:COG1007 184 NLAGiaaalAAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGaptpvtaflatAPKIAAFAALL--RLLVEAF 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 142 MLQIHPWTNTniLLLIALLSILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTfcpSLTVLNLS-------IYLALTII 214
Cdd:COG1007 262 PGLAADWQLL--LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLA---AGTPLGVSaalfyllAYLFMNLG 336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 215 MFTTLNLNTSTTTLTLSNL-----WNKTPVITLTTMVTLLSLGGLPPLTGFLPKWMIIQDLSKNNNTIMATIMAIMALLN 289
Cdd:COG1007 337 AFAVILLLSRKGGEAEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVIS 416
|
....*....
gi 1197511388 290 LYFYMRLIY 298
Cdd:COG1007 417 AYYYLRVVK 425
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
8-297 |
4.36e-14 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 72.67 E-value: 4.36e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 8 LIMATVFTGTTLTVASSHWLLMWIGLEINMLAV-IPILMKNHKPRSTEAATKYFLTQATASMLLMFTIVLNATNSGQWNI 86
Cdd:TIGR01770 106 ILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNF 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 87 TTTHSQFTSLTITI------------ALTMKMGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQIHPW------ 148
Cdd:TIGR01770 186 EDLLLFLSNGMLNIsllllgivlilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYilfgfs 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 149 -TNTNILLLIALLSILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLSIYLALTIIMfTTLNLNTSTTT 227
Cdd:TIGR01770 266 eAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALM-SLGAFGVLSLL 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 228 LTLSNLWNKT-----------PVITLTTMVTLLSLGGLPPLTGFLPKWMIIQDLSKNNNTIMATIMAIMALLNLYFYMRL 296
Cdd:TIGR01770 345 RSYKDEWIEYisdfaglfktnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
|
.
gi 1197511388 297 I 297
Cdd:TIGR01770 425 V 425
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
1.02e-153 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 435.43 E-value: 1.02e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 1 MNPITLLLIMATVFTGTTLTVASSHWLLMWIGLEINMLAVIPILMKNHKPRSTEAATKYFLTQATASMLLMFTIVLNATN 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 81 SGQWNITTTHSQFTSLTITIALTMKMGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQIHPWTNTNILLLIALL 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLSIYLALTIIMFTTLNLNTSTTTLTLSNLWNKTPVI 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 241 TLTTMVTLLSLGGLPPLTGFLPKWMIIQDLSKNNNTIMATIMAIMALLNLYFYMRLIYSTSLTLFPTFNNTKMKWQLQIT 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330 340
....*....|....*....|....*..
gi 1197511388 321 NQTRLMPPLIILSTLSLPLAPTFSTLY 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
1.59e-111 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 328.30 E-value: 1.59e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 1 MNPITLLLIMATVFTGTTLTVASSHWLLMWIGLEINMLAVIPILMKNHKPRSTEAATKYFLTQATASMLLMFTIVLNATN 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 81 SGQWNITTTHSQFTSLTITIALTMKMGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQIHPwTNTNILLLIALL 160
Cdd:MTH00135 81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAP-TNPTLLITLGLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLSIYLALTIIMFTTLNLNTSTTTLTLSNLWNKTPVI 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 241 TLTTMVTLLSLGGLPPLTGFLPKWMIIQDLSKNNNTIMATIMAIMALLNLYFYMRLIYSTSLTLFPTFNNTKMKWQLQIT 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
|
330 340
....*....|....*....|....*.
gi 1197511388 321 NQTRLMPPLIILSTLSLPLAPTFSTL 346
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTPAILAL 345
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
3.53e-108 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 319.56 E-value: 3.53e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 1 MNPITLLLIMATVFTGTTLTVASSHWLLMWIGLEINMLAVIPILMKNHKPRSTEAATKYFLTQATASMLLMFTIVLNATN 80
Cdd:MTH00070 1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 81 SGQWNITTTHSQFTSLTITIALTMKMGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQIHPWTNTNILLLIALL 160
Cdd:MTH00070 81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLSIYLALTIIMFTTLNLNTSTTTLTLSNLWNKTPVI 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 241 TLTTMVTLLSLGGLPPLTGFLPKWMIIQDLSKNNNTIMATIMAIMALLNLYFYMRLIYSTSLTLFPTFNNTKMKWQLQiT 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFK-N 319
|
330 340
....*....|....*....|....*..
gi 1197511388 321 NQTRLMPPLIILSTLSLPLAPTFSTLY 347
Cdd:MTH00070 320 KTNNLLSLTIILSLMLLPITPTILNLF 346
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
2.83e-107 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 317.53 E-value: 2.83e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 1 MNPITLLLIMATVFTGTTLTVASSHWLLMWIGLEINMLAVIPILMKNHKPRSTEAATKYFLTQATASMLLMFTIVLNATN 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 81 SGQWNITTTHSQFTSLTITIALTMKMGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQIHPWTNTNILLLIALL 160
Cdd:MTH00112 81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLSIYLALTIIMFTTLNLNTSTTTLTLSNLWNKTPVI 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 241 TLTTMVTLLSLGGLPPLTGFLPKWMIIQDLSKNNNTIMATIMAIMALLNLYFYMRLIYSTSLTLFPTFNNTKMKWQLQiT 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTK-P 319
|
330 340
....*....|....*....|....*.
gi 1197511388 321 NQTRLMPPLIILSTLSLPLAPTFSTL 346
Cdd:MTH00112 320 KKNTLTATLTTLSTLLLPLSPMILTI 345
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
4.92e-79 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 245.26 E-value: 4.92e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 1 MNPITLLLIMATVFTGTTLTVASSHWLLMWIGLEINMLAVIPILMKNHKPRSTEAATKYFLTQATASMLLMFTIVLNATN 80
Cdd:MTH00200 1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 81 SGQWNITTTHSQFTSLTITIALTMKMGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQIHPWTNTNILLLIALL 160
Cdd:MTH00200 81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLSIYLALTIIMFTTLNLNTSTTTLTLSNLWNKTPVI 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 241 TLTTMVTLLSLGGLPPLTGFLPKWMIIQDLSKNNNTIMATIMAIMALLNLYFYMRLIYSTSLTLFPTFNNTKMKWQLQiT 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTK-S 319
|
330 340
....*....|....*....|....*.
gi 1197511388 321 NQTRLMPPLIILSTLSLPLAPTFSTL 346
Cdd:MTH00200 320 NSNLLVGLLLLLSILGLPLTPQLLFL 345
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-347 |
1.03e-75 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 236.75 E-value: 1.03e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 1 MNPITLLLIMATVFTGTTLTVASSHWLLMWIGLEINMLAVIPILMKNHKPRSTEAATKYFLTQATASMLLMFTIVLNATN 80
Cdd:MTH00041 1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 81 SGQWNITTTHSQFTSLTITIALTMKMGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQIHPWTNTNILLLIALL 160
Cdd:MTH00041 81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLSIYLALTIIMFTTLNLNTSTTTLTLSNLWNKTPVI 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 241 TLTTMVTLLSLGGLPPLTGFLPKWMIIQDLSKNNNTIMATIMAIMALLNLYFYMRLIYSTSLTLFPT--FNNTKMKWQLQ 318
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQhsISLFSWRNSGN 320
|
330 340
....*....|....*....|....*....
gi 1197511388 319 ITNQTRLMPPLIILSTLSLPLAPTFSTLY 347
Cdd:MTH00041 321 ITVYGVILSILSSISILGLLLIPLFLSFL 349
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-343 |
3.31e-50 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 170.39 E-value: 3.31e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 1 MNPITLLLIMATVFTGTTLTVASSHWLLMWIGLEINMLAVIPILMKNHKPRSTEAATKYFLTQATASMLLMFTIVLNATN 80
Cdd:MTH00160 2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 81 SGQWNIttthsqFTSLTITIALTMKMGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQIhpwTNTNILLLIALL 160
Cdd:MTH00160 82 LMLFNN------ISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLSIYLALTIIMFTTLNLNTSTTTLTLSNLWNKTPVI 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 241 TLTTMVTLLSLGGLPPLTGFLPKWMIIQDLSKNNNTIMATIMAIMALLNLYFYMRLIYStslTLFPTFNNTKMKWQLQIT 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYS---SLMLNYNKNKWNLKKKKN 309
|
330 340
....*....|....*....|...
gi 1197511388 321 NQTRLMPPLIILSTLSLPLAPTF 343
Cdd:MTH00160 310 KFSLILNFLSFISLFGLILSSLL 332
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
7-315 |
3.18e-45 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 157.36 E-value: 3.18e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 7 LLIMATVFTGTTLTVASSHWLLMWIGLEINMLAVIPILMKNHKPRSTEAATKYFLTQATASMLLMFTIVLNATNSGQWni 86
Cdd:MTH00144 7 LLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW-- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 87 ttthsqFTSLTITIALTMKMGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQIHPWTNTNILLLIA-LLSILVG 165
Cdd:MTH00144 85 ------FSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVIsVLSALVG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 166 GWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLSIYLALTIIMFTTLNLNTSTTTLTLSNLwNKTPVITLTTM 245
Cdd:MTH00144 159 SIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPSYKTGLSII 237
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 246 VTLLSLGGLPPLTGFLPKWMIIQDLSKNNNTIMATIMAIMALLNLYFYMRLIYSTSLTLFPTFNNTKMKW 315
Cdd:MTH00144 238 SLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
5-312 |
2.49e-43 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 152.24 E-value: 2.49e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 5 TLLLIMATVFTGTTLTVASSHWLLMWIGLEINMLAVIPILMKNHKPRSTEAATKYFLTQATASMLLMFTIVLnatnsgQW 84
Cdd:MTH00011 7 TMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 85 NITTTHSQFTSLTITIALTMKMGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQIHPWTNTNILLLIALLSILV 164
Cdd:MTH00011 81 SFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 165 GGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLSIYLALTIIMFTTLNLNTSTTTLTLSNLWNKTPVITLTT 244
Cdd:MTH00011 161 GGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1197511388 245 MVTLLSLGGLPPLTGFLPKWMIIQDLSKNNNTIMATIMAIMALLNLYFYMRLIYStSLTLFPTFNNTK 312
Cdd:MTH00011 241 FIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN-FMYLSPTFSSLK 307
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
8-300 |
3.64e-35 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 130.56 E-value: 3.64e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 8 LIMATVFTGTTLTVASSHWLLMWIGLEINMLAVIPILMKNHKPRSTEAATKYFLTQATASMLLMFTIVLNATNsgqwnit 87
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSN------- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 88 TTHSQFTSLTITIALTMKMGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQIHpwTNTNILLLIALLSILVGGW 167
Cdd:MTH00197 75 LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNS--SSFMGLLICSVLSSLIGGI 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 168 GGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLSIYLALTIIMFTTLNLNTSTTTLTLSNLWNKTPVITLTTMVT 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1197511388 248 LLSLGGLPPLTGFLPKWMIIQDLSKNNNTIMATIMAIMALLNLYFYMRLIYST 300
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKS 285
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
8-298 |
8.44e-23 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 98.55 E-value: 8.44e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 8 LIMATVFTGTTLTVASSHWLLMWIGLEINMLAV-IPILMKNHKPRSTEAATKYFLTQATASMLLMFTIVLNATNSGQWNI 86
Cdd:MTH00199 101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 87 TTTHSQFTS----LTITIALTMKMGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQIHPwtNTNILLLIALLSI 162
Cdd:MTH00199 181 QGINSILTGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGP--VTNVVLICAVLSI 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 163 LVGGWGGLNQTQLRKILAYSSIAHMG---WMMAILTFCP-SLTVLNLSIYLALTIIMFTTLNLNTSTTTLT--LSNLWNK 236
Cdd:MTH00199 259 IYGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFESiQASLIYMIIYVIMSICSFSIILSLKLTKGLIveVSGLSRK 338
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1197511388 237 TPVITLTTMVTLLSLGGLPPLTGFLPKWMIIQDLSKNNNTIMATIMAIMALLNLYFYMRLIY 298
Cdd:MTH00199 339 NPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVVQ 400
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
13-297 |
2.96e-20 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 90.47 E-value: 2.96e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 13 VFTGTTLTVASSHWLLMWIGLEINMLAV-IPILMKNHKPRSTEAATKYFLTQATASMLLMFTIVL-------------NA 78
Cdd:MTH00196 2 VALGILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALlcgttgglhlsyiNL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 79 TNSGQWNITTTHSQFTSLTITIALTMKMGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQIHPwtNTNILLLIA 158
Cdd:MTH00196 82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGL--NVNILLIGG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 159 LLSILVGGWGGLNQTQLRKILAYSSIAHMG---WMMAILTFC---PSLTVLNLSIYLALTIIMFTTLNLNTSTTTLTLSN 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGfvlWGIEIGSFEsiqASLVYLFIYIIMSICVFSIILALNVYKNLIIEFSG 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1197511388 233 LWNKTPVITLTTMVTLLSLGGLPPLTGFLPKWMIIQDLSKNNNTIMATIMAIMALLNLYFYMRLI 297
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIV 304
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-268 |
4.27e-18 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 83.13 E-value: 4.27e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 23 SSHWLLMWIGLEINMLAVIP-ILMKNHKPRSTEAATKYFLTQATASMLLMFTIVLNATNSGQWNITTTHSQFT------- 94
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTgglnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 95 ----SLTITIALTMKMGMTPFHFWVPEVTQGISLMAGMLLL-TWQKLAPISIM-----LQIHPWTNTNILLLIALLSILV 164
Cdd:pfam00361 81 llllFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIrrsllYLPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 165 GGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLSIYL-------ALTIIMFTTLNLNTSTTTLTLSN--LWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLlthglfsAGLFLCAGSVIYRRVHTRNIRDYggLAK 240
|
250 260 270
....*....|....*....|....*....|...
gi 1197511388 236 KTPVITLTTMVTLLSLGGLPPLTGFLPKWMIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
6-298 |
1.74e-15 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 77.08 E-value: 1.74e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 6 LLLIMATVftGTTLTVASSHWLLMWIGLEINMLAV-IPILMKNHKPRSTEAATKYFLTQATASMLLMFTIVLNATNSGQW 84
Cdd:COG1007 106 ALLLFATL--GMMLMASANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSL 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 85 NITT-----THSQFTSLTITIALTM-------KMGMTPFHFWVPEVTQG-----------ISLMAGMLLLTwqKLAPISI 141
Cdd:COG1007 184 NLAGiaaalAAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGaptpvtaflatAPKIAAFAALL--RLLVEAF 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 142 MLQIHPWTNTniLLLIALLSILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTfcpSLTVLNLS-------IYLALTII 214
Cdd:COG1007 262 PGLAADWQLL--LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLA---AGTPLGVSaalfyllAYLFMNLG 336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 215 MFTTLNLNTSTTTLTLSNL-----WNKTPVITLTTMVTLLSLGGLPPLTGFLPKWMIIQDLSKNNNTIMATIMAIMALLN 289
Cdd:COG1007 337 AFAVILLLSRKGGEAEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVIS 416
|
....*....
gi 1197511388 290 LYFYMRLIY 298
Cdd:COG1007 417 AYYYLRVVK 425
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
6-192 |
3.27e-14 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 73.32 E-value: 3.27e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 6 LLLIMATVftGTTLTVASSHWLLMWIGLEINMLAV-IPILMKNHKPRSTEAATKYFLTQATASMLLMFTIVLNATNSGQW 84
Cdd:PRK05777 107 LLVLFALL--GMMVMVSANDLLTLFLGLELLSLPLyALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSL 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 85 NITTTHSQFTSLT------------ITIALTMKMGMTPFHFWVPEVTQG-----ISLMAgmlllTWQKLAPISIMLQI-- 145
Cdd:PRK05777 185 SFAGIAKALADGSgnsllllfglvfLLVGLAFKLSAVPFHMWTPDVYEGaptpvTAFLA-----TAPKIAAFAVLLRLlv 259
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1197511388 146 -----HPWTNTNILLLIALLSILVGGWGGLNQTQLRKILAYSSIAHMGWMMA 192
Cdd:PRK05777 260 vafggLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLV 311
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
8-297 |
4.36e-14 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 72.67 E-value: 4.36e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 8 LIMATVFTGTTLTVASSHWLLMWIGLEINMLAV-IPILMKNHKPRSTEAATKYFLTQATASMLLMFTIVLNATNSGQWNI 86
Cdd:TIGR01770 106 ILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNF 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 87 TTTHSQFTSLTITI------------ALTMKMGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQIHPW------ 148
Cdd:TIGR01770 186 EDLLLFLSNGMLNIsllllgivlilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYilfgfs 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 149 -TNTNILLLIALLSILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLSIYLALTIIMfTTLNLNTSTTT 227
Cdd:TIGR01770 266 eAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALM-SLGAFGVLSLL 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 228 LTLSNLWNKT-----------PVITLTTMVTLLSLGGLPPLTGFLPKWMIIQDLSKNNNTIMATIMAIMALLNLYFYMRL 296
Cdd:TIGR01770 345 RSYKDEWIEYisdfaglfktnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
|
.
gi 1197511388 297 I 297
Cdd:TIGR01770 425 V 425
|
|
| NADH_dehy_S2_C |
pfam06444 |
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ... |
291-341 |
8.03e-09 |
|
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.
Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 51.10 E-value: 8.03e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1197511388 291 YFYMRLIYSTSLTLFPTFNNTKMKWQLQITNQTRLMPPLIILSTLSLPLAP 341
Cdd:pfam06444 1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
3-301 |
5.96e-08 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 54.00 E-value: 5.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 3 PITLLLIMatvftGTTLTVASSHWLLMWIGLEINMLAVIPILMKNHKPRSTEAATKYFLTQATASMLLMFTIVLNATNSG 82
Cdd:COG0651 111 PLFLLLLA-----GMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATG 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 83 QWNITTTHSQFTSLT----------ITIALTMKMGMTPFHFWVPE--------VT---QGISLMAGM--LLLTWQKLAPI 139
Cdd:COG0651 186 TLNMADLAARLAELDpglllaafalLLVGFGIKAALFPLHFWLPDaypaapspVSallSGLLTKVGVyaILRVLTLLFGA 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 140 SIMLQIHPWtntniLLLIALLSILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLSIYL---ALTIIMF 216
Cdd:COG0651 266 DPALFLGTL-----LLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhALAKALL 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 217 -----TTLNLNTSTTTLTLSNLWNKTPVITLTTMVTLLSLGGLPPLTGFLPKWMIIQDLSKNNNTIMATIMAIMALLNLY 291
Cdd:COG0651 341 flaagAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLA 420
|
330
....*....|
gi 1197511388 292 FYMRLIYSTS 301
Cdd:COG0651 421 YFVRIFGRAQ 430
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
49-196 |
9.90e-06 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 47.24 E-value: 9.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 49 KPRSTEAATKYFLTQATASMLLMFTIVLNATNSG---------QWNITTTHSQFTSLTITIALTMKMGMTPFHFWVPEV- 118
Cdd:TIGR01972 151 GPNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgtfdllellNLPLPFGVQTWLFLAFFIAFAVKVPLFPLHTWLPDAh 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 119 ----TQGISLMAGMLLltwqKLAPISIM---LQIHPwtNTNILLLIALLSILV-----GGWGGLNQTQLRKILAYSSIAH 186
Cdd:TIGR01972 231 veapTAGSVILAGVLL----KMGTYGFLrfnLPLFP--DASLYFAPVLAALGViaiiyGALIALAQTDIKRLIAYSSISH 304
|
170
....*....|.
gi 1197511388 187 MGW-MMAILTF 196
Cdd:TIGR01972 305 MGFvLLGIFSF 315
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
3-267 |
1.89e-05 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 46.39 E-value: 1.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 3 PITLLLIMATVFTGTTLTVASSHWLLMWIGLEINMLAVIPILMKNHKPRST---------EAATKYFLTQATASMLLMFT 73
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 74 IVLNATNSGQ--------------WNITTTHSQFTSLTITIALTMKMGMTPFHFWVPEVTQGISLMAGMLLLTWQKLapI 139
Cdd:MTH00198 267 CALYFGFTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--T 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 140 SIMLQIHPWTNTNILLLIALLSILVGGWGGLNQTQLRKILAYSSIAHMGWMM------------AILTFCPSLTVLNLSI 207
Cdd:MTH00198 345 VYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILigvsagtyeslqASWTYAVTYLVSALAS 424
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1197511388 208 YLALTIIMFTTLNLNTSTTTLTLSNLWNKT-------------PVITLTTMVTLLSLGGLPPLTGFLPKWMII 267
Cdd:MTH00198 425 FTVICTLEEFGTRTPTSRQRDGSFGNYNLVrrlvdltilsrgqPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
55-192 |
1.36e-04 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 43.53 E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 55 AATKYFLTQATASMLLMFTIVLNATNSGQW--NITTTHSQFTSLT--------ITIALTMKMGMTPFHFWVPEV-----T 119
Cdd:COG1008 162 AAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAAPLPLTaqlllflaFFIAFAVKVPMFPFHTWLPDAhveapT 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 120 QGISLMAGMLL----------------LTWQKLAPISIMLQIhpwtntnilllialLSILVGGWGGLNQTQLRKILAYSS 183
Cdd:COG1008 242 AGSVLLAGVLLkmggygllrfalplfpEASAYFAPLLAALGV--------------IGIIYGALVALAQTDLKRLIAYSS 307
|
....*....
gi 1197511388 184 IAHMGWMMA 192
Cdd:COG1008 308 VSHMGFVLL 316
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
9-191 |
1.84e-04 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 43.12 E-value: 1.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 9 IMATVFTGTTLTVASSHWLLMWIGLEinMLAVIPILMKNH---KPRSTEAATKYFLTQATASMLLMFTI-VLNATNSGQW 84
Cdd:PRK02504 115 ILLTATLGGMFLSGATELVMIFISLE--TLSIASYLLTGYmkrDPRSNEAALKYLLIGAASSAIFLYGSsLLYGLSGGST 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 85 NITTTHSQFT---SLTITIALTM-------KMGMTPFHFWVPEVTQGISLMAGMLLLTWQKLA----PISIMLQIHPWTN 150
Cdd:PRK02504 193 QLSAIALALItspSLGLALALVFviagiafKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFD 272
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1197511388 151 TN---ILLLIALLSILVGGWGGLNQTQLRKILAYSSIAHMGWMM 191
Cdd:PRK02504 273 EQwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
47-194 |
1.03e-03 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 40.91 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 47 NHKPRSTEAATKYFLTQATASMLLMFTIVLNATNSGQWNITT----THSQFTSLTITIALTM-------KMGMTPFHFWV 115
Cdd:COG1009 155 YEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSEllaaAPTILSSPLLTLILLLlllgafgKSAQFPLHFWL 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 116 PE-----------------VTQGISLMAgmllltwqKLAPIsimLQIHPWTNTnILLLIALLSILVGGWGGLNQTQLRKI 178
Cdd:COG1009 235 PDamegptpvsallhaatmVKAGVYLLA--------RLSPL---FALSPVWLT-VVAIIGAITALFAALIALAQTDIKRV 302
|
170
....*....|....*.
gi 1197511388 179 LAYSSIAHMGWMMAIL 194
Cdd:COG1009 303 LAYSTVSQLGYMFLAL 318
|
|
| PRK12561 |
PRK12561 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
55-191 |
1.56e-03 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 237137 [Multi-domain] Cd Length: 504 Bit Score: 40.40 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 55 AATKYFLTQATASMLLMF----------TIVLNATNSGQWNITTTHSQFTSLTITIALTMKMGMTPFHFWVP----EVTQ 120
Cdd:PRK12561 138 AATKFILYTALASIFILVaglalalsgdTFTFDLAELGAKSYPLALELLLYAGFLIAFGVKLPIFPLHTWLPdahgEASA 217
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1197511388 121 GISLMAGMLLLTWQKLAPISIMLQIHPWTNTNILLLIALLSILVGGWGGLN---QTQLRKILAYSSIAHMGWMM 191
Cdd:PRK12561 218 PVSMILAGVLLKMGGYALIRFNVQMLPDAHVYFAPALAILGVVNIIYGALNafaQDNVKRRLAYSSVSHMGFVL 291
|
|
| PRK05846 |
PRK05846 |
NADH:ubiquinone oxidoreductase subunit M; Reviewed |
55-191 |
2.65e-03 |
|
NADH:ubiquinone oxidoreductase subunit M; Reviewed
Pssm-ID: 235622 [Multi-domain] Cd Length: 497 Bit Score: 39.42 E-value: 2.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 55 AATKYFL-TQAT-----ASMLLMFTIVLNATNSGQW------NITTTHSQFTSLTITIALTMKMGMTPFHFWVPEV---- 118
Cdd:PRK05846 162 AATKFFLyTLLGsllmlVAIIYLVVVYYNATGTFDIadllnlPLPPGVQYWLFLAFFIAFAVKMPMFPLHTWLPDAhvqa 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511388 119 -TQGISLMAGMLLltwqKLAP---ISIMLQIHPwtNTNILLLIALLSILV-----GGWGGLNQTQLRKILAYSSIAHMGW 189
Cdd:PRK05846 242 pTAGSVLLAGILL----KMGAyglLRFSLPLFP--DASHEFAPIIITLGViaiiyGALVALAQTDIKKLIAYSSISHMGF 315
|
..
gi 1197511388 190 MM 191
Cdd:PRK05846 316 VT 317
|
|
| ND2 |
MTH00091 |
NADH dehydrogenase subunit 2; Provisional |
102-145 |
9.68e-03 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177154 Cd Length: 273 Bit Score: 37.16 E-value: 9.68e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 1197511388 102 LTMKMGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQI 145
Cdd:MTH00091 67 LMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQF 110
|
|
| |
