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Conserved domains on  [gi|1197511562|ref|YP_009368264|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Lepilemur tymerlachsoni]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009567)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 2.84e-70

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 205.56  E-value: 2.84e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511562   1 MNLPLTITINTLMVMILMMIAFWLPQLNVYTEKYNPYECGFDPMGSARLPFSMKFFRVAITFLLFDLEIALLLPLPWAIQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1197511562  81 TNNLKLTLTTALALISILTAGLAYEWFQKGLEWEE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 2.84e-70

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 205.56  E-value: 2.84e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511562   1 MNLPLTITINTLMVMILMMIAFWLPQLNVYTEKYNPYECGFDPMGSARLPFSMKFFRVAITFLLFDLEIALLLPLPWAIQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1197511562  81 TNNLKLTLTTALALISILTAGLAYEWFQKGLEWEE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 1.32e-30

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 104.43  E-value: 1.32e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511562  18 MMIAFWLPQLNVYTEKYNPYECGFDPMGSARLPFSMKFFRVAITFLLFDLEIALLlpLPWAIQTNNLKLT-LTTALALIS 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFgFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 1197511562  97 ILTAGLAYEWFQKGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 12-113 7.71e-23

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 85.56  E-value: 7.71e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511562  12 LMVMILMMIAFWLPQLNVYTEKYNPYECGFDPMGSARLPFSMKFFRVAITFLLFDLEIALLlpLPWAIQTNNLKLT-LTT 90
Cdd:COG0838    17 GLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELGWFgLIE 94

                          90       100
                  ....*....|....*....|...
gi 1197511562  91 ALALISILTAGLAYEWFQKGLEW 113
Cdd:COG0838    95 MLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 2.84e-70

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 205.56  E-value: 2.84e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511562   1 MNLPLTITINTLMVMILMMIAFWLPQLNVYTEKYNPYECGFDPMGSARLPFSMKFFRVAITFLLFDLEIALLLPLPWAIQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1197511562  81 TNNLKLTLTTALALISILTAGLAYEWFQKGLEWEE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-115 5.12e-50

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 154.31  E-value: 5.12e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511562   1 MNLPLTI-TINTLMVMILMMIAFWLPQLNVYTEKYNPYECGFDPMGSARLPFSMKFFRVAITFLLFDLEIALLLPLPWAI 79
Cdd:MTH00136    1 MNLITTIlTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1197511562  80 QTNNLKLTLTTALALISILTAGLAYEWFQKGLEWEE 115
Cdd:MTH00136   81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-115 2.23e-45

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 142.44  E-value: 2.23e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511562   3 LPLTITINTLMVMILMMIAFWLPQLNVYTEKYNPYECGFDPMGSARLPFSMKFFRVAITFLLFDLEIALLLPLPWAIQTN 82
Cdd:MTH00069    2 IMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLN 81

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1197511562  83 NLKLTLTTALALISILTAGLAYEWFQKGLEWEE 115
Cdd:MTH00069   82 TPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-113 8.87e-45

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 141.17  E-value: 8.87e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511562   1 MNLPLTITINTLMVMILMMIAFWLPQLNVYTEKYNPYECGFDPMGSARLPFSMKFFRVAITFLLFDLEIALLLPLPWAIQ 80
Cdd:MTH00113    1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1197511562  81 TNNLKLTLTTALALISILTAGLAYEWFQKGLEW 113
Cdd:MTH00113   81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEW 113
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-115 1.95e-35

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 117.39  E-value: 1.95e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511562   1 MNLPLTITINTLMVMILMMIAFWLPQLNVYTEKYNPYECGFDPMGSARLPFSMKFFRVAITFLLFDLEIALLLPLPWAIQ 80
Cdd:MTH00042    2 TNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATL 81

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1197511562  81 TNNLKLTLTTALALISILTAGLAYEWFQKGLEWEE 115
Cdd:MTH00042   82 ITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 5-113 3.12e-34

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 114.22  E-value: 3.12e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511562   5 LTITINTLMVMILMMIAFWLPQLNVYTEKYNPYECGFDPMGSARLPFSMKFFRVAITFLLFDLEIALLLPLPWAIQTNNL 84
Cdd:MTH00203    6 LFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLSSL 85

                          90       100
                  ....*....|....*....|....*....
gi 1197511562  85 KLTLttALALISILTAGLAYEWFQKGLEW 113
Cdd:MTH00203   86 SLLL--AFLFLILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 1.32e-30

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 104.43  E-value: 1.32e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511562  18 MMIAFWLPQLNVYTEKYNPYECGFDPMGSARLPFSMKFFRVAITFLLFDLEIALLlpLPWAIQTNNLKLT-LTTALALIS 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFgFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 1197511562  97 ILTAGLAYEWFQKGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 5-115 2.24e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 96.85  E-value: 2.24e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511562   5 LTITINTLMVMILMMIAFWLPQLNVY-TEKYNPYECGFDPMGSARLPFSMKFFRVAITFLLFDLEIALLLPLPWAIQTNN 83
Cdd:MTH00148    6 LSLLFALILSPVLLLLGLVLSKRSYSdREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLGSSF 85

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1197511562  84 LKLTLTTALALISILTAGLAYEWFQKGLEWEE 115
Cdd:MTH00148   86 SVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 5-113 5.53e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 93.30  E-value: 5.53e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511562   5 LTITINTLMVMILMMIAFWL-PQLNVYTEKYNPYECGFDPMGSARLPFSMKFFRVAITFLLFDLEIALLLPLPWAIQTNN 83
Cdd:MTH00161    4 IILLIILLISIILMILASLLsKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSN 83

                          90       100       110
                  ....*....|....*....|....*....|
gi 1197511562  84 LKLTLTTALALISILTAGLAYEWFQKGLEW 113
Cdd:MTH00161   84 MMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 5-113 1.16e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 87.74  E-value: 1.16e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511562   5 LTITINTLMVMILMMIAFwlpQLNVYTEKYNPYECGFDPMGSARLPFSMKFFRVAITFLLFDLEIALLLPLPWAIQTNNL 84
Cdd:MTH00202   10 LSILISSLLFLVSWMLSF---RSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLKSSWS 86

                          90       100
                  ....*....|....*....|....*....
gi 1197511562  85 KLTLTTALALISILTAGLAYEWFQKGLEW 113
Cdd:MTH00202   87 KGGLLGGTIFLLILIGGLIHEWKEGSLDW 115
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 12-113 7.71e-23

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 85.56  E-value: 7.71e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511562  12 LMVMILMMIAFWLPQLNVYTEKYNPYECGFDPMGSARLPFSMKFFRVAITFLLFDLEIALLlpLPWAIQTNNLKLT-LTT 90
Cdd:COG0838    17 GLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELGWFgLIE 94

                          90       100
                  ....*....|....*....|...
gi 1197511562  91 ALALISILTAGLAYEWFQKGLEW 113
Cdd:COG0838    95 MLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 13-113 7.37e-22

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 82.98  E-value: 7.37e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511562  13 MVMILMMIAFWLPQLNVYT------------EKYNPYECGFDPMGSARLPFSMKFFRVAITFLLFDLEIALLLPLPWAIQ 80
Cdd:MTH00012    3 LMMIPMMISLILPPLVLGAawvlaarstadrEKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILM 82

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1197511562  81 TNNLKLTLTTALALISILTAGLAYEWFQKGLEW 113
Cdd:MTH00012   83 TSTSKTVVYTSILFLLILVIGLIHEWREGSLDW 115
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 31-114 9.88e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 82.84  E-value: 9.88e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511562  31 TEKYNPYECGFDPMGSARLPFSMKFFRVAITFLLFDLEIALLlpLPWAIQTNNLKL--TLTTALALIsILTAGLAYEWFQ 108
Cdd:MTH00055   36 SEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFL--FPWCVVYNQIGLfgFWVMYLFLI-ILTIGLIYEWVK 112


                  ....*.
gi 1197511562 109 KGLEWE 114
Cdd:MTH00055  113 GGLEWE 118
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 7-114 5.80e-21

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 80.68  E-value: 5.80e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511562   7 ITINTLMVMILMMIAFWLPQLNVYTEKYNPYECGFDPMGSARLPFSMKFFRVAITFLLFDLEIALLlpLPWAIQTNNLKL 86
Cdd:PRK06602   15 LIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFREIGW 92

                          90       100
                  ....*....|....*....|....*....
gi 1197511562  87 T-LTTALALISILTAGLAYEWFQKGLEWE 114
Cdd:PRK06602   93 LgFVEAMIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 32-114 3.97e-19

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 75.87  E-value: 3.97e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511562  32 EKYNPYECGFDPMGSARLPFSMKFFRVAITFLLFDLEIALLlpLPWAIQTNNLKL-TLTTALALISILTAGLAYEWFQKG 110
Cdd:MTH00018   32 EKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFL--FPWCVLYNQIAPfGFWTMVGFLFILTLGLIYEWIKGG 109


                  ....
gi 1197511562 111 LEWE 114
Cdd:MTH00018  110 LEWE 113
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 31-114 2.18e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 71.89  E-value: 2.18e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511562  31 TEKYNPYECGFDPMGSARLPFSMKFFRVAITFLLFDLEIALLlpLPWAIQTNNLKL-TLTTALALISILTAGLAYEWFQK 109
Cdd:MTH00030   41 SEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFL--FPWSIVFNQLNLfSFWIVYTFLIVLAIGLAYEWIKG 118


                  ....*
gi 1197511562 110 GLEWE 114
Cdd:MTH00030  119 GLEWD 123
ndhC CHL00022
NADH dehydrogenase subunit 3
 20-113 1.42e-11

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 56.53  E-value: 1.42e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511562  20 IAFWLPQL----NVYTEKYNPYECGFDPMGSARLPFSMKFFRVAITFLLFDLEIALLlpLPWAIQTNNLKL-TLTTALAL 94
Cdd:CHL00022   23 LAFLISGLlapiSKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVsAFIEALIF 100

                          90
                  ....*....|....*....
gi 1197511562  95 ISILTAGLAYEWFQKGLEW 113
Cdd:CHL00022  101 VLILIVGLVYAWRKGALEW 119
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 33-114 8.74e-10

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 51.98  E-value: 8.74e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511562  33 KYNPYECGFDPMGSARLP--FSMKFFRVAITFLLFDLEIALLLPlpWAIQTNNLKLTLTTALAL-ISILTAGLAYEWFQK 109
Cdd:PRK07928   37 KLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP--WAVSFDALGVFGLVEMALfMLTVFVAYAYVWRRG 114


                  ....*
gi 1197511562 110 GLEWE 114
Cdd:PRK07928  115 GLEWD 119
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
32-113 2.91e-09

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 50.90  E-value: 2.91e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511562  32 EKYNPYECGFDPMGSARLPFSMKFFRVAITFLLFDLEIALLLPlpWAIQTNNLKL-TLTTALALISILTAGLAYEWFQKG 110
Cdd:PRK07756   41 AKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP--WAVAYDKLGLfALIEMLIFVVMLLVGLAYAWKKKV 118


                  ...
gi 1197511562 111 LEW 113
Cdd:PRK07756  119 LQW 121
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-113 9.19e-08

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 46.43  E-value: 9.19e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511562   1 MNLPLTITINTLMVMILMMIAFWLPQLNVYTEKYNPYECGFDPMGSARLPFSMKFFRVAITFLLFDLEIALLLPLpwaiq 80
Cdd:MTH00092    2 LVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGL----- 76

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1197511562  81 TNNLKLTLTTALALISILTAGLAYEWFQKGLEW 113
Cdd:MTH00092   77 LVSDFSSLISFFMLMIFIFFGFYMEWWYGKLIW 109
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
3-114 1.09e-06

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 44.27  E-value: 1.09e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511562   3 LPLTITINTLMVMILMMIAFWLPQLNVYTEKYNPYECGFDPMGSARlPFSMKFFRVAITFLLFDLEIALLLPlpWAIQTN 82
Cdd:PRK08489   17 LVLTFVAFFLTTRLARFISRKLAQKNTEKLKLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFMFP--WAVDFK 93

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1197511562  83 NLKL-TLTTALALISILTAGLAYEWFQKGLEWE 114
Cdd:PRK08489   94 LLGLfGLIEMLLFIVLLTIGFIYAWKKGALEWQ 126
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 34-76 2.09e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 37.95  E-value: 2.09e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1197511562  34 YNPYECGFDPMGSARLPFSMKFFRVAITFLLFDLEIALLLPLP 76
Cdd:MTH00060   38 VSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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